Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53841.t1 | KEH36081.1 | 89.8 | 363 | 32 | 2 | 1 | 361 | 1 | 360 | 3.70E-182 | 647.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53841.t1 | O81862 | 47.9 | 359 | 172 | 6 | 11 | 360 | 9 | 361 | 7.3e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53841.t1 | A0A072V330 | 89.8 | 363 | 32 | 2 | 1 | 361 | 1 | 360 | 2.7e-182 | 647.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052589 | MS.gene53841 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene53841 | 0.855714 | 5.24E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53841 | MS.gene72024 | PPI |
| MS.gene53841 | MS.gene40256 | PPI |
| MS.gene53841 | MS.gene43244 | PPI |
| MS.gene055584 | MS.gene53841 | PPI |
| MS.gene53841 | MS.gene014609 | PPI |
| MS.gene40255 | MS.gene53841 | PPI |
| MS.gene53841 | MS.gene72023 | PPI |
| MS.gene53841 | MS.gene40706 | PPI |
| MS.gene53841 | MS.gene021954 | PPI |
| MS.gene53841 | MS.gene72022 | PPI |
| MS.gene53841 | MS.gene014611 | PPI |
| MS.gene40706 | MS.gene53841 | PPI |
| MS.gene53841 | MS.gene48549 | PPI |
| MS.gene53841 | MS.gene40257 | PPI |
| MS.gene53841 | MS.gene40255 | PPI |
| MS.gene53841 | MS.gene44679 | PPI |
| MS.gene53841 | MS.gene055584 | PPI |
| MS.gene53841 | MS.gene57747 | PPI |
| MS.gene53841 | MS.gene014610 | PPI |
| MS.gene53841 | MS.gene036626 | PPI |
| MS.gene53841 | MS.gene40705 | PPI |
| MS.gene53841 | MS.gene40707 | PPI |
| MS.gene53841 | MS.gene44682 | PPI |
| MS.gene53841 | MS.gene041428 | PPI |
| MS.gene53841 | MS.gene58750 | PPI |
| MS.gene53841 | MS.gene021944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53841.t1 | MTR_3g110280 | 90.305 | 361 | 34 | 1 | 1 | 361 | 1 | 360 | 0.0 | 652 |
| MS.gene53841.t1 | MTR_3g110320 | 83.380 | 361 | 58 | 1 | 1 | 361 | 1 | 359 | 0.0 | 615 |
| MS.gene53841.t1 | MTR_3g110320 | 83.333 | 360 | 58 | 1 | 1 | 360 | 1 | 358 | 0.0 | 613 |
| MS.gene53841.t1 | MTR_4g116920 | 75.616 | 365 | 71 | 3 | 1 | 364 | 1 | 348 | 0.0 | 542 |
| MS.gene53841.t1 | MTR_4g117040 | 36.022 | 372 | 212 | 9 | 9 | 364 | 6 | 367 | 1.81e-65 | 221 |
| MS.gene53841.t1 | MTR_1g013150 | 34.473 | 351 | 211 | 5 | 22 | 359 | 32 | 376 | 9.10e-65 | 211 |
| MS.gene53841.t1 | MTR_4g117020 | 33.421 | 380 | 227 | 9 | 3 | 368 | 2 | 369 | 1.08e-61 | 211 |
| MS.gene53841.t1 | MTR_4g117030 | 35.207 | 338 | 197 | 7 | 41 | 365 | 1 | 329 | 8.27e-59 | 202 |
| MS.gene53841.t1 | MTR_4g117000 | 34.311 | 341 | 206 | 7 | 30 | 358 | 35 | 369 | 2.24e-57 | 191 |
| MS.gene53841.t1 | MTR_4g116990 | 35.447 | 347 | 198 | 8 | 30 | 358 | 37 | 375 | 4.38e-54 | 183 |
| MS.gene53841.t1 | MTR_4g117800 | 34.463 | 177 | 112 | 1 | 6 | 182 | 4 | 176 | 1.64e-24 | 104 |
| MS.gene53841.t1 | MTR_7g096730 | 37.500 | 88 | 47 | 3 | 289 | 368 | 3 | 90 | 7.52e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53841.t1 | AT4G19810 | 49.167 | 360 | 168 | 6 | 11 | 361 | 9 | 362 | 3.28e-113 | 335 |
| MS.gene53841.t1 | AT4G19810 | 49.167 | 360 | 168 | 6 | 11 | 361 | 9 | 362 | 3.28e-113 | 335 |
| MS.gene53841.t1 | AT4G19820 | 46.537 | 361 | 178 | 6 | 10 | 361 | 6 | 360 | 8.79e-101 | 303 |
| MS.gene53841.t1 | AT4G19800 | 44.058 | 345 | 179 | 5 | 25 | 361 | 2 | 340 | 8.31e-95 | 288 |
| MS.gene53841.t1 | AT4G19750 | 43.956 | 364 | 176 | 10 | 17 | 363 | 1 | 353 | 1.11e-92 | 282 |
| MS.gene53841.t1 | AT4G19760 | 43.902 | 369 | 175 | 10 | 17 | 361 | 1 | 361 | 5.01e-91 | 278 |
| MS.gene53841.t1 | AT4G19720 | 42.857 | 350 | 173 | 7 | 30 | 361 | 6 | 346 | 2.36e-86 | 266 |
| MS.gene53841.t1 | AT4G19730 | 42.773 | 339 | 165 | 9 | 17 | 333 | 1 | 332 | 1.65e-76 | 239 |
| MS.gene53841.t1 | AT4G19770 | 41.379 | 261 | 140 | 5 | 115 | 367 | 1 | 256 | 6.54e-59 | 192 |
| MS.gene53841.t1 | AT4G19740 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 1.30e-28 | 111 |
Find 86 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.4:+84041714 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.4:+84042026 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7.4:+84041454 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.4:-84042039 | MS.gene53841:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7.4:-84041334 | MS.gene53841:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.4:-84041106 | MS.gene53841:CDS |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 7.4:+84041013 | None:intergenic |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.4:+84042049 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.4:-84042029 | MS.gene53841:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.4:+84041321 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7.4:-84041387 | MS.gene53841:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7.4:-84041115 | MS.gene53841:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7.4:+84041398 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.4:-84041607 | MS.gene53841:CDS |
| ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7.4:+84041925 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7.4:-84041317 | MS.gene53841:CDS |
| CGAATTACTCTTTAACTGAA+TGG | 0.386421 | 7.4:+84041861 | None:intergenic |
| GAAGTTGAAATGACCAACTT+TGG | 0.388370 | 7.4:-84041661 | MS.gene53841:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7.4:+84041407 | None:intergenic |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7.4:+84041588 | None:intergenic |
| AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7.4:-84041268 | MS.gene53841:CDS |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.4:-84041183 | MS.gene53841:CDS |
| CATTCAGTTAAAGAGTAATT+CGG | 0.416514 | 7.4:-84041860 | MS.gene53841:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.4:-84041615 | MS.gene53841:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7.4:+84041805 | None:intergenic |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7.4:-84041506 | MS.gene53841:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.4:-84041324 | MS.gene53841:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7.4:-84041069 | MS.gene53841:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.4:+84041969 | None:intergenic |
| GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7.4:-84041267 | MS.gene53841:CDS |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.4:-84041184 | MS.gene53841:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.4:-84041699 | MS.gene53841:CDS |
| CTTGGTTGGTATTAGGATCA+AGG | 0.463271 | 7.4:+84041932 | None:intergenic |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.4:-84041174 | MS.gene53841:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7.4:-84041376 | MS.gene53841:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7.4:-84041507 | MS.gene53841:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7.4:+84041455 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7.4:-84041512 | MS.gene53841:CDS |
| GTCATTTCAACTTCTGAGGA+TGG | 0.479248 | 7.4:+84041670 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.4:+84041442 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7.4:+84041406 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7.4:+84041532 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7.4:+84041873 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.4:+84042074 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7.4:-84041386 | MS.gene53841:CDS |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.4:-84041052 | MS.gene53841:CDS |
| AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 7.4:+84041906 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.4:+84042055 | None:intergenic |
| GTTGGTCATTTCAACTTCTG+AGG | 0.534568 | 7.4:+84041666 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7.4:-84041599 | MS.gene53841:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7.4:+84041120 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7.4:+84041517 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.4:+84041698 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7.4:+84041722 | None:intergenic |
| TGTAATGAGAAAACCAAAGT+TGG | 0.557402 | 7.4:+84041648 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.4:-84041571 | MS.gene53841:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7.4:-84041574 | MS.gene53841:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7.4:+84041774 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.4:-84041629 | MS.gene53841:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7.4:-84041400 | MS.gene53841:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7.4:-84041382 | MS.gene53841:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.4:+84041970 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.4:+84041956 | None:intergenic |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.4:+84041322 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7.4:-84041381 | MS.gene53841:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.4:-84041137 | MS.gene53841:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.4:+84041692 | None:intergenic |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7.4:+84041580 | None:intergenic |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7.4:+84042085 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.4:-84041169 | MS.gene53841:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.4:+84042041 | None:intergenic |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7.4:-84041575 | MS.gene53841:CDS |
| GGTGGTTATTGGTATTCTGA+TGG | 0.621200 | 7.4:-84042018 | MS.gene53841:CDS |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7.4:-84041266 | MS.gene53841:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.4:-84041715 | MS.gene53841:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.4:-84041251 | MS.gene53841:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.4:+84042067 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 7.4:+84041957 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.4:+84041992 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7.4:+84041518 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.4:-84042036 | MS.gene53841:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 7.4:+84041918 | None:intergenic |
| GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 7.4:+84041914 | None:intergenic |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.4:-84041535 | MS.gene53841:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.4:+84041606 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7.4:+84041456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.4:84041904-84041923 | MS.gene53841:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.4:84041903-84041922 | MS.gene53841:CDS | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7.4:84041860-84041879 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.4:84041906-84041925 | MS.gene53841:CDS | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.4:84041905-84041924 | MS.gene53841:CDS | 25.0% |
| ! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7.4:84041278-84041297 | MS.gene53841:CDS | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7.4:84041852-84041871 | None:intergenic | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr7.4:84041392-84041411 | None:intergenic | 25.0% |
| AAATTGGACAAGACAACAAT+TGG | - | chr7.4:84042069-84042088 | MS.gene53841:CDS | 30.0% | |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.4:84041954-84041973 | MS.gene53841:CDS | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.4:84041907-84041926 | MS.gene53841:CDS | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.4:84041115-84041134 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7.4:84041280-84041299 | None:intergenic | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.4:84041955-84041974 | MS.gene53841:CDS | 30.0% | |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7.4:84041493-84041512 | None:intergenic | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.4:84041303-84041322 | MS.gene53841:CDS | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.4:84042045-84042064 | MS.gene53841:CDS | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7.4:84041300-84041319 | MS.gene53841:CDS | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.4:84041949-84041968 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7.4:84041686-84041705 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7.4:84041863-84041882 | MS.gene53841:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7.4:84041864-84041883 | MS.gene53841:CDS | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.4:84041172-84041191 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.4:84041171-84041190 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.4:84041820-84041839 | None:intergenic | 35.0% | |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7.4:84041752-84041771 | MS.gene53841:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.4:84041631-84041650 | MS.gene53841:CDS | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.4:84041821-84041840 | MS.gene53841:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.4:84041819-84041838 | None:intergenic | 35.0% | |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7.4:84041477-84041496 | MS.gene53841:CDS | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7.4:84041268-84041287 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.4:84041814-84041833 | MS.gene53841:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7.4:84041626-84041645 | MS.gene53841:CDS | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr7.4:84041184-84041203 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.4:84041632-84041651 | MS.gene53841:CDS | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.4:84041086-84041105 | None:intergenic | 35.0% | |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7.4:84042053-84042072 | MS.gene53841:CDS | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.4:84042036-84042055 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.4:84041419-84041438 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7.4:84041687-84041706 | None:intergenic | 35.0% |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7.4:84041685-84041704 | None:intergenic | 35.0% |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7.4:84041757-84041776 | MS.gene53841:CDS | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.4:84042086-84042105 | MS.gene53841:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.4:84041074-84041093 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7.4:84041751-84041770 | MS.gene53841:CDS | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.4:84041092-84041111 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7.4:84041789-84041808 | MS.gene53841:CDS | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr7.4:84041185-84041204 | None:intergenic | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.4:84041109-84041128 | MS.gene53841:CDS | 40.0% | |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7.4:84041743-84041762 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.4:84041149-84041168 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.4:84041423-84041442 | MS.gene53841:CDS | 40.0% | |
| GGTGGTTATTGGTATTCTGA+TGG | - | chr7.4:84041120-84041139 | MS.gene53841:CDS | 40.0% | |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr7.4:84041227-84041246 | None:intergenic | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7.4:84042023-84042042 | MS.gene53841:CDS | 40.0% | |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7.4:84041475-84041494 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.4:84041099-84041118 | MS.gene53841:CDS | 40.0% | |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7.4:84041336-84041355 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7.4:84041623-84041642 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.4:84041969-84041988 | MS.gene53841:CDS | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7.4:84041624-84041643 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.4:84041100-84041119 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.4:84041306-84041325 | MS.gene53841:CDS | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7.4:84041040-84041059 | None:intergenic | 40.0% |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7.4:84041209-84041228 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7.4:84041471-84041490 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr7.4:84041385-84041404 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.4:84041223-84041242 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7.4:84041718-84041737 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7.4:84041216-84041235 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7.4:84041792-84041811 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.4:84042032-84042051 | MS.gene53841:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.4:84041427-84041446 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7.4:84041496-84041515 | MS.gene53841:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.4:84041309-84041328 | MS.gene53841:CDS | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.4:84041102-84041121 | MS.gene53841:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.4:84041964-84041983 | MS.gene53841:CDS | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7.4:84041563-84041582 | MS.gene53841:CDS | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr7.4:84041235-84041254 | None:intergenic | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.4:84042001-84042020 | MS.gene53841:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7.4:84041762-84041781 | MS.gene53841:CDS | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.4:84041734-84041753 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7.4:84041564-84041583 | MS.gene53841:CDS | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7.4:84041756-84041775 | MS.gene53841:CDS | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.4:84041449-84041468 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.4:84041804-84041823 | MS.gene53841:CDS | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7.4:84041561-84041580 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.4:84041738-84041757 | MS.gene53841:CDS | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.4:84041735-84041754 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7.4:84041609-84041628 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr7.4:84041056-84041075 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7.4:84042021-84042040 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.4:84041067-84041086 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.4:84041603-84041622 | MS.gene53841:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7.4:84041717-84041736 | MS.gene53841:CDS | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7.4:84041717-84041736 | None:intergenic | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7.4:84041723-84041742 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.4:84041887-84041906 | MS.gene53841:CDS | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7.4:84041870-84041889 | MS.gene53841:CDS | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7.4:84041871-84041890 | MS.gene53841:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7.4:84041872-84041891 | MS.gene53841:CDS | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.4:84041567-84041586 | MS.gene53841:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.4:84041439-84041458 | MS.gene53841:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7.4:84041380-84041399 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7.4:84041367-84041386 | None:intergenic | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7.4:84041553-84041572 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.4:84041443-84041462 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.4:84041699-84041718 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7.4:84041714-84041733 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.4:84041531-84041550 | MS.gene53841:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.4:84041535-84041554 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.4:84041539-84041558 | MS.gene53841:CDS | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.4:84041509-84041528 | MS.gene53841:CDS | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.4:84041523-84041542 | MS.gene53841:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 84041027 | 84042133 | 84041027 | ID=MS.gene53841 |
| chr7.4 | mRNA | 84041027 | 84042133 | 84041027 | ID=MS.gene53841.t1;Parent=MS.gene53841 |
| chr7.4 | exon | 84041027 | 84042133 | 84041027 | ID=MS.gene53841.t1.exon1;Parent=MS.gene53841.t1 |
| chr7.4 | CDS | 84041027 | 84042133 | 84041027 | ID=cds.MS.gene53841.t1;Parent=MS.gene53841.t1 |
| Gene Sequence |
| Protein sequence |
