Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44679.t1 | KEH36081.1 | 85.7 | 363 | 26 | 3 | 1 | 340 | 1 | 360 | 2.90E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44679.t1 | O81862 | 46.2 | 357 | 160 | 6 | 11 | 339 | 9 | 361 | 1.5e-80 | 301.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44679.t1 | A0A072V330 | 85.7 | 363 | 26 | 3 | 1 | 340 | 1 | 360 | 2.1e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054107 | MS.gene44679 | 0.845863 | 3.11E-59 | -1.69E-46 |
| MS.gene056514 | MS.gene44679 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene057888 | MS.gene44679 | 0.805457 | 1.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44679 | MS.gene021954 | PPI |
| MS.gene44679 | MS.gene72022 | PPI |
| MS.gene055584 | MS.gene44679 | PPI |
| MS.gene014609 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene48549 | PPI |
| MS.gene44679 | MS.gene40257 | PPI |
| MS.gene44679 | MS.gene57747 | PPI |
| MS.gene44682 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene014610 | PPI |
| MS.gene44679 | MS.gene036626 | PPI |
| MS.gene44679 | MS.gene40705 | PPI |
| MS.gene014611 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene041428 | PPI |
| MS.gene40255 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene021944 | PPI |
| MS.gene44679 | MS.gene43244 | PPI |
| MS.gene53841 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene72023 | PPI |
| MS.gene44679 | MS.gene40707 | PPI |
| MS.gene40706 | MS.gene44679 | PPI |
| MS.gene44679 | MS.gene40256 | PPI |
| MS.gene72024 | MS.gene44679 | PPI |
| MS.gene58750 | MS.gene44679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44679.t1 | MTR_3g110280 | 86.150 | 361 | 28 | 2 | 1 | 340 | 1 | 360 | 0.0 | 608 |
| MS.gene44679.t1 | MTR_3g110320 | 79.224 | 361 | 52 | 2 | 1 | 340 | 1 | 359 | 0.0 | 572 |
| MS.gene44679.t1 | MTR_3g110320 | 79.167 | 360 | 52 | 2 | 1 | 339 | 1 | 358 | 0.0 | 570 |
| MS.gene44679.t1 | MTR_4g116920 | 71.781 | 365 | 64 | 4 | 1 | 343 | 1 | 348 | 1.01e-178 | 499 |
| MS.gene44679.t1 | MTR_1g013150 | 33.811 | 349 | 195 | 5 | 22 | 338 | 32 | 376 | 2.42e-61 | 201 |
| MS.gene44679.t1 | MTR_4g117040 | 34.877 | 367 | 202 | 10 | 9 | 343 | 6 | 367 | 4.76e-58 | 200 |
| MS.gene44679.t1 | MTR_4g117020 | 31.733 | 375 | 219 | 9 | 3 | 347 | 2 | 369 | 3.71e-54 | 190 |
| MS.gene44679.t1 | MTR_4g117030 | 33.634 | 333 | 188 | 7 | 41 | 344 | 1 | 329 | 1.32e-51 | 182 |
| MS.gene44679.t1 | MTR_4g117000 | 31.287 | 342 | 194 | 9 | 30 | 337 | 35 | 369 | 2.00e-45 | 159 |
| MS.gene44679.t1 | MTR_4g116990 | 31.884 | 345 | 192 | 8 | 30 | 337 | 37 | 375 | 6.13e-43 | 153 |
| MS.gene44679.t1 | MTR_4g117800 | 28.947 | 304 | 164 | 4 | 6 | 299 | 4 | 265 | 3.45e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44679.t1 | AT4G19810 | 46.369 | 358 | 160 | 5 | 11 | 340 | 9 | 362 | 1.12e-104 | 312 |
| MS.gene44679.t1 | AT4G19810 | 46.369 | 358 | 160 | 5 | 11 | 340 | 9 | 362 | 1.12e-104 | 312 |
| MS.gene44679.t1 | AT4G19820 | 44.847 | 359 | 166 | 6 | 10 | 340 | 6 | 360 | 1.02e-94 | 286 |
| MS.gene44679.t1 | AT4G19800 | 41.983 | 343 | 168 | 5 | 25 | 340 | 2 | 340 | 4.87e-86 | 265 |
| MS.gene44679.t1 | AT4G19750 | 41.209 | 364 | 165 | 10 | 17 | 342 | 1 | 353 | 2.18e-84 | 260 |
| MS.gene44679.t1 | AT4G19760 | 40.872 | 367 | 168 | 9 | 17 | 340 | 1 | 361 | 1.32e-80 | 250 |
| MS.gene44679.t1 | AT4G19720 | 40.346 | 347 | 167 | 6 | 29 | 340 | 5 | 346 | 1.23e-76 | 240 |
| MS.gene44679.t1 | AT4G19730 | 37.464 | 347 | 151 | 9 | 17 | 312 | 1 | 332 | 6.36e-63 | 204 |
| MS.gene44679.t1 | AT4G19770 | 37.838 | 259 | 131 | 5 | 115 | 346 | 1 | 256 | 9.07e-49 | 165 |
| MS.gene44679.t1 | AT4G19740 | 32.086 | 187 | 100 | 4 | 138 | 297 | 24 | 210 | 3.26e-21 | 90.9 |
Find 77 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.3:+82743599 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.3:+82743911 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.3:-82743924 | MS.gene44679:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7.3:-82743219 | MS.gene44679:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.3:-82742991 | MS.gene44679:CDS |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 7.3:+82742898 | None:intergenic |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.3:+82743934 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.3:-82743914 | MS.gene44679:CDS |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 7.3:-82743272 | MS.gene44679:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.3:+82743206 | None:intergenic |
| GCAGCAGATAACAACATTTC+CGG | 0.307874 | 7.3:+82743465 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7.3:-82743000 | MS.gene44679:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 7.3:+82743283 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.3:-82743492 | MS.gene44679:CDS |
| ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7.3:+82743810 | None:intergenic |
| CGAATTACTCTTTAACTGAA+TGG | 0.377363 | 7.3:+82743746 | None:intergenic |
| TAACAACATTTCCGGCTTGC+CGG | 0.385110 | 7.3:+82743473 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7.3:-82743202 | MS.gene44679:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7.3:+82743292 | None:intergenic |
| AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7.3:-82743153 | MS.gene44679:CDS |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.3:-82743068 | MS.gene44679:CDS |
| GACGTTGAAATGACCAACTT+TGG | 0.415190 | 7.3:-82743546 | MS.gene44679:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.3:-82743500 | MS.gene44679:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7.3:+82743690 | None:intergenic |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.3:-82743209 | MS.gene44679:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.3:+82743854 | None:intergenic |
| GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7.3:-82743152 | MS.gene44679:CDS |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.3:-82743069 | MS.gene44679:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.3:-82743584 | MS.gene44679:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.3:-82743059 | MS.gene44679:CDS |
| ATATTGGACAAGACAACAAT+TGG | 0.465810 | 7.3:-82742954 | MS.gene44679:CDS |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 7.3:+82743791 | None:intergenic |
| CTTGGTTGGTATTAGGATCA+AGG | 0.473190 | 7.3:+82743817 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.3:+82743327 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 7.3:-82743261 | MS.gene44679:CDS |
| TAACCTGGGTAGTACTTCAA+TGG | 0.492072 | 7.3:+82743417 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7.3:+82743291 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 7.3:-82743271 | MS.gene44679:CDS |
| GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 7.3:+82743555 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7.3:+82743758 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.3:+82743959 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.525983 | 7.3:-82743484 | MS.gene44679:CDS |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.3:-82742937 | MS.gene44679:CDS |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.3:+82743940 | None:intergenic |
| TGTAATGAGTAAACCAAAGT+TGG | 0.531161 | 7.3:+82743533 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7.3:+82743005 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.3:+82743583 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7.3:+82743607 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 7.3:-82743267 | MS.gene44679:CDS |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.3:-82743456 | MS.gene44679:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7.3:+82743659 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.3:-82743514 | MS.gene44679:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.573534 | 7.3:-82743285 | MS.gene44679:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.3:+82743855 | None:intergenic |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.3:+82743841 | None:intergenic |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 7.3:-82743266 | MS.gene44679:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.3:+82743207 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.3:-82743022 | MS.gene44679:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.3:+82743577 | None:intergenic |
| GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 7.3:+82743551 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 7.3:+82743803 | None:intergenic |
| AATGTTGTTATCTGCTGCAG+TGG | 0.603089 | 7.3:-82743460 | MS.gene44679:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7.3:+82743970 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.3:-82743054 | MS.gene44679:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.3:+82743926 | None:intergenic |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7.3:-82743151 | MS.gene44679:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.3:-82743600 | MS.gene44679:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.3:-82743136 | MS.gene44679:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.3:+82743952 | None:intergenic |
| ATGTTGTTATCTGCTGCAGT+GGG | 0.637823 | 7.3:-82743459 | MS.gene44679:CDS |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 7.3:+82743799 | None:intergenic |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 7.3:+82743842 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.3:+82743877 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.3:-82743921 | MS.gene44679:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.3:-82743420 | MS.gene44679:intron |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.3:+82743491 | None:intergenic |
| TTGGTTTACTCATTACAGCG+TGG | 0.741266 | 7.3:-82743527 | MS.gene44679:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.3:82743789-82743808 | MS.gene44679:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.3:82743788-82743807 | MS.gene44679:CDS | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7.3:82743745-82743764 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.3:82743791-82743810 | MS.gene44679:CDS | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.3:82743790-82743809 | MS.gene44679:CDS | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7.3:82743737-82743756 | None:intergenic | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr7.3:82743277-82743296 | None:intergenic | 25.0% |
| !! | TTGAAAACGCTTTTATCAAT+TGG | - | chr7.3:82743185-82743204 | MS.gene44679:CDS | 25.0% |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.3:82743839-82743858 | MS.gene44679:CDS | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.3:82743792-82743811 | MS.gene44679:CDS | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.3:82743000-82743019 | None:intergenic | 30.0% | |
| ATATTGGACAAGACAACAAT+TGG | - | chr7.3:82743954-82743973 | MS.gene44679:CDS | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7.3:82743165-82743184 | None:intergenic | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.3:82743840-82743859 | MS.gene44679:CDS | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr7.3:82743378-82743397 | None:intergenic | 30.0% | |
| TTAAGATGTTGCAAACAACT+TGG | - | chr7.3:82743511-82743530 | MS.gene44679:CDS | 30.0% | |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.3:82743188-82743207 | MS.gene44679:CDS | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.3:82743930-82743949 | MS.gene44679:CDS | 30.0% |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr7.3:82743637-82743656 | MS.gene44679:CDS | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.3:82743834-82743853 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7.3:82743748-82743767 | MS.gene44679:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7.3:82743749-82743768 | MS.gene44679:CDS | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.3:82743057-82743076 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.3:82743056-82743075 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.3:82743705-82743724 | None:intergenic | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr7.3:82743069-82743088 | None:intergenic | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.3:82743516-82743535 | MS.gene44679:CDS | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.3:82743706-82743725 | MS.gene44679:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.3:82743704-82743723 | None:intergenic | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7.3:82743153-82743172 | None:intergenic | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.3:82743699-82743718 | MS.gene44679:CDS | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr7.3:82743628-82743647 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.3:82743517-82743536 | MS.gene44679:CDS | 35.0% | |
| TGTTTGCAACATCTTAACCT+GGG | + | chr7.3:82743508-82743527 | None:intergenic | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7.3:82743112-82743131 | None:intergenic | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.3:82742971-82742990 | None:intergenic | 35.0% | |
| TTGTTTGCAACATCTTAACC+TGG | + | chr7.3:82743509-82743528 | None:intergenic | 35.0% | |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr7.3:82743642-82743661 | MS.gene44679:CDS | 35.0% |
| ! | GGATATTTTGCTTGGCATAT+TGG | - | chr7.3:82743938-82743957 | MS.gene44679:CDS | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.3:82743921-82743940 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.3:82743304-82743323 | None:intergenic | 35.0% |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr7.3:82743636-82743655 | MS.gene44679:CDS | 35.0% |
| AATGTTGTTATCTGCTGCAG+TGG | - | chr7.3:82743448-82743467 | MS.gene44679:CDS | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.3:82743971-82743990 | MS.gene44679:CDS | 40.0% | |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7.3:82743120-82743139 | None:intergenic | 40.0% | |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr7.3:82743647-82743666 | MS.gene44679:CDS | 40.0% | |
| ATGTTGTTATCTGCTGCAGT+GGG | - | chr7.3:82743449-82743468 | MS.gene44679:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.3:82742959-82742978 | None:intergenic | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr7.3:82743070-82743089 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.3:82742977-82742996 | None:intergenic | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7.3:82743674-82743693 | MS.gene44679:CDS | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.3:82742994-82743013 | MS.gene44679:CDS | 40.0% | |
| GACGTTGAAATGACCAACTT+TGG | - | chr7.3:82743362-82743381 | MS.gene44679:intron | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.3:82743034-82743053 | None:intergenic | 40.0% | |
| GCAGCAGATAACAACATTTC+CGG | + | chr7.3:82743446-82743465 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.3:82743308-82743327 | MS.gene44679:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7.3:82743908-82743927 | MS.gene44679:CDS | 40.0% | |
| TAACCTGGGTAGTACTTCAA+TGG | + | chr7.3:82743494-82743513 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.3:82742984-82743003 | MS.gene44679:CDS | 40.0% | |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7.3:82743221-82743240 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.3:82743854-82743873 | MS.gene44679:CDS | 40.0% | |
| TTGGTTTACTCATTACAGCG+TGG | - | chr7.3:82743381-82743400 | MS.gene44679:intron | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.3:82742985-82743004 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.3:82743191-82743210 | MS.gene44679:CDS | 40.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7.3:82742925-82742944 | None:intergenic | 40.0% |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7.3:82743094-82743113 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr7.3:82743270-82743289 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.3:82743108-82743127 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7.3:82743603-82743622 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7.3:82743101-82743120 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7.3:82743677-82743696 | None:intergenic | 40.0% |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr7.3:82743641-82743660 | MS.gene44679:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.3:82743917-82743936 | MS.gene44679:CDS | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.3:82743312-82743331 | None:intergenic | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.3:82743194-82743213 | MS.gene44679:CDS | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.3:82742987-82743006 | MS.gene44679:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.3:82743849-82743868 | MS.gene44679:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.3:82743886-82743905 | MS.gene44679:CDS | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.3:82743619-82743638 | None:intergenic | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.3:82743334-82743353 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.3:82743689-82743708 | MS.gene44679:CDS | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.3:82743623-82743642 | MS.gene44679:CDS | 45.0% | |
| GTCATTTCAACGTCTGAGGA+TGG | + | chr7.3:82743356-82743375 | None:intergenic | 45.0% | |
| GTTGGTCATTTCAACGTCTG+AGG | + | chr7.3:82743360-82743379 | None:intergenic | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.3:82743620-82743639 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr7.3:82742941-82742960 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7.3:82743906-82743925 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.3:82742952-82742971 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.3:82743488-82743507 | MS.gene44679:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7.3:82743602-82743621 | MS.gene44679:CDS | 45.0% |
| ! | TAACAACATTTCCGGCTTGC+CGG | + | chr7.3:82743438-82743457 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7.3:82743602-82743621 | None:intergenic | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7.3:82743608-82743627 | None:intergenic | 45.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.3:82743772-82743791 | MS.gene44679:CDS | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7.3:82743755-82743774 | MS.gene44679:CDS | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7.3:82743756-82743775 | MS.gene44679:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7.3:82743757-82743776 | MS.gene44679:CDS | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.3:82743452-82743471 | MS.gene44679:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.3:82743324-82743343 | MS.gene44679:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7.3:82743265-82743284 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7.3:82743252-82743271 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.3:82743328-82743347 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.3:82743584-82743603 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7.3:82743599-82743618 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.3:82743416-82743435 | MS.gene44679:intron | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.3:82743420-82743439 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.3:82743424-82743443 | MS.gene44679:CDS | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.3:82743394-82743413 | MS.gene44679:intron | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.3:82743408-82743427 | MS.gene44679:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 82742912 | 82744018 | 82742912 | ID=MS.gene44679 |
| chr7.3 | mRNA | 82742912 | 82744018 | 82742912 | ID=MS.gene44679.t1;Parent=MS.gene44679 |
| chr7.3 | exon | 82743421 | 82744018 | 82743421 | ID=MS.gene44679.t1.exon1;Parent=MS.gene44679.t1 |
| chr7.3 | CDS | 82743421 | 82744018 | 82743421 | ID=cds.MS.gene44679.t1;Parent=MS.gene44679.t1 |
| chr7.3 | exon | 82742912 | 82743357 | 82742912 | ID=MS.gene44679.t1.exon2;Parent=MS.gene44679.t1 |
| chr7.3 | CDS | 82742912 | 82743357 | 82742912 | ID=cds.MS.gene44679.t1;Parent=MS.gene44679.t1 |
| Gene Sequence |
| Protein sequence |
