Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72024.t1 | PNY09053.1 | 93 | 358 | 25 | 0 | 1 | 358 | 1 | 358 | 2.80E-190 | 674.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72024.t1 | O81862 | 51.1 | 364 | 165 | 6 | 11 | 365 | 9 | 368 | 1.5e-91 | 337.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72024.t1 | A0A2K3P1D5 | 93.0 | 358 | 25 | 0 | 1 | 358 | 1 | 358 | 2.0e-190 | 674.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055584 | MS.gene72024 | 0.912005 | 3.19E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72024 | MS.gene57747 | PPI |
| MS.gene53841 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene014610 | PPI |
| MS.gene72024 | MS.gene036626 | PPI |
| MS.gene72024 | MS.gene40705 | PPI |
| MS.gene72024 | MS.gene44682 | PPI |
| MS.gene72024 | MS.gene041428 | PPI |
| MS.gene40706 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene72023 | PPI |
| MS.gene72024 | MS.gene40707 | PPI |
| MS.gene72024 | MS.gene021944 | PPI |
| MS.gene72024 | MS.gene40256 | PPI |
| MS.gene58750 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene43244 | PPI |
| MS.gene055584 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene021954 | PPI |
| MS.gene72024 | MS.gene72022 | PPI |
| MS.gene44682 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene014611 | PPI |
| MS.gene014609 | MS.gene72024 | PPI |
| MS.gene014611 | MS.gene72024 | PPI |
| MS.gene40255 | MS.gene72024 | PPI |
| MS.gene72024 | MS.gene48549 | PPI |
| MS.gene72024 | MS.gene40257 | PPI |
| MS.gene72024 | MS.gene44679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72024.t1 | MTR_3g110320 | 83.516 | 364 | 60 | 0 | 1 | 364 | 1 | 364 | 0.0 | 633 |
| MS.gene72024.t1 | MTR_3g110280 | 87.465 | 359 | 44 | 1 | 1 | 358 | 1 | 359 | 0.0 | 630 |
| MS.gene72024.t1 | MTR_3g110320 | 83.844 | 359 | 58 | 0 | 1 | 359 | 1 | 359 | 0.0 | 628 |
| MS.gene72024.t1 | MTR_4g116920 | 85.278 | 360 | 37 | 3 | 1 | 359 | 1 | 345 | 0.0 | 599 |
| MS.gene72024.t1 | MTR_1g013150 | 35.112 | 356 | 214 | 5 | 22 | 364 | 32 | 383 | 1.92e-65 | 212 |
| MS.gene72024.t1 | MTR_4g117040 | 38.040 | 347 | 188 | 9 | 30 | 359 | 28 | 364 | 3.85e-62 | 212 |
| MS.gene72024.t1 | MTR_4g117000 | 35.159 | 347 | 209 | 7 | 29 | 363 | 34 | 376 | 3.27e-61 | 201 |
| MS.gene72024.t1 | MTR_4g116990 | 36.798 | 356 | 195 | 8 | 29 | 363 | 36 | 382 | 2.21e-59 | 196 |
| MS.gene72024.t1 | MTR_4g117020 | 33.693 | 371 | 222 | 9 | 3 | 359 | 2 | 362 | 1.62e-58 | 202 |
| MS.gene72024.t1 | MTR_4g117030 | 35.435 | 333 | 193 | 8 | 41 | 359 | 1 | 325 | 2.44e-56 | 196 |
| MS.gene72024.t1 | MTR_4g117800 | 34.286 | 175 | 113 | 1 | 6 | 180 | 4 | 176 | 5.83e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72024.t1 | AT4G19810 | 52.589 | 367 | 155 | 7 | 11 | 365 | 9 | 368 | 1.22e-120 | 353 |
| MS.gene72024.t1 | AT4G19810 | 52.589 | 367 | 155 | 7 | 11 | 365 | 9 | 368 | 1.22e-120 | 353 |
| MS.gene72024.t1 | AT4G19820 | 47.945 | 365 | 177 | 6 | 10 | 365 | 6 | 366 | 1.73e-105 | 315 |
| MS.gene72024.t1 | AT4G19760 | 45.553 | 371 | 172 | 10 | 17 | 363 | 1 | 365 | 1.18e-95 | 290 |
| MS.gene72024.t1 | AT4G19750 | 45.278 | 360 | 177 | 9 | 17 | 362 | 1 | 354 | 5.08e-94 | 285 |
| MS.gene72024.t1 | AT4G19800 | 45.882 | 340 | 170 | 6 | 30 | 360 | 7 | 341 | 5.62e-94 | 286 |
| MS.gene72024.t1 | AT4G19720 | 44.350 | 354 | 172 | 8 | 30 | 365 | 6 | 352 | 3.41e-89 | 273 |
| MS.gene72024.t1 | AT4G19730 | 42.604 | 338 | 165 | 9 | 17 | 331 | 1 | 332 | 1.00e-71 | 227 |
| MS.gene72024.t1 | AT4G19770 | 41.797 | 256 | 139 | 4 | 113 | 360 | 1 | 254 | 1.77e-57 | 188 |
| MS.gene72024.t1 | AT4G19740 | 36.649 | 191 | 107 | 5 | 136 | 316 | 24 | 210 | 9.84e-29 | 111 |
Find 89 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAGTTGTTATTTC+TGG | 0.094267 | 3.4:+95564002 | None:intergenic |
| CCCCACCACCAATTGATAAA+AGG | 0.195506 | 3.4:+95564112 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 3.4:-95563472 | MS.gene72024:CDS |
| TCTGCAAAAGCTGAAATTAA+AGG | 0.269287 | 3.4:-95564321 | MS.gene72024:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.4:-95563394 | MS.gene72024:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 3.4:-95563403 | MS.gene72024:CDS |
| ATAAAGCTACACAGGGGCTT+GGG | 0.335713 | 3.4:-95563555 | MS.gene72024:CDS |
| ACCCAAGAGTCTAGCAGTTC+TGG | 0.345855 | 3.4:-95563895 | MS.gene72024:CDS |
| TGCCAGAACTGCTAGACTCT+TGG | 0.370329 | 3.4:+95563893 | None:intergenic |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.4:-95563357 | MS.gene72024:CDS |
| ACAAGGATATAATAAATGTT+GGG | 0.382597 | 3.4:-95563522 | MS.gene72024:CDS |
| ACTGGCTTGGCTAGCCATAT+TGG | 0.395681 | 3.4:+95564062 | None:intergenic |
| TTCCTTCATCTGCACTGAAC+TGG | 0.404343 | 3.4:+95563686 | None:intergenic |
| GATAAAGCTACACAGGGGCT+TGG | 0.405269 | 3.4:-95563556 | MS.gene72024:CDS |
| CTGCACTGAACTGGCCTGTC+GGG | 0.414245 | 3.4:+95563695 | None:intergenic |
| CAGATGAAGGAATCACAAAA+TGG | 0.416610 | 3.4:-95563675 | MS.gene72024:CDS |
| TCAATGGTCTTGATCTTGAC+TGG | 0.423081 | 3.4:-95563987 | MS.gene72024:CDS |
| TGAACTACTCTTTGCCTGAA+TGG | 0.425900 | 3.4:+95564143 | None:intergenic |
| CCCACCACCAATTGATAAAA+GGG | 0.428641 | 3.4:+95564113 | None:intergenic |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 3.4:-95563462 | MS.gene72024:CDS |
| GAAGGAATCACAAAATGGAT+TGG | 0.434027 | 3.4:-95563670 | MS.gene72024:CDS |
| GCCAGAACTGCTAGACTCTT+GGG | 0.439126 | 3.4:+95563894 | None:intergenic |
| TATTGCAAGCAACTTGGATT+GGG | 0.441089 | 3.4:-95563794 | MS.gene72024:CDS |
| GACCTGGGTAGTATTCCAAT+GGG | 0.443214 | 3.4:+95563821 | None:intergenic |
| ATCACAAAATGGATTGGGTT+AGG | 0.444351 | 3.4:-95563664 | MS.gene72024:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 3.4:-95563471 | MS.gene72024:CDS |
| CTGAAATTAAAGGTGGCTAT+TGG | 0.446672 | 3.4:-95564311 | MS.gene72024:CDS |
| GATTGTTTGGATACTTTGCT+TGG | 0.448742 | 3.4:-95563381 | MS.gene72024:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.450194 | 3.4:-95563515 | MS.gene72024:CDS |
| TACAAGGATATAATAAATGT+TGG | 0.455760 | 3.4:-95563523 | MS.gene72024:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 3.4:+95564251 | None:intergenic |
| GATAACTATCTGAGGTGAAA+AGG | 0.460405 | 3.4:+95563752 | None:intergenic |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 3.4:+95564214 | None:intergenic |
| AACCTTCACTGAAACCATTC+AGG | 0.468884 | 3.4:-95564157 | MS.gene72024:CDS |
| AGCTGCGTTTGCAGAAGAAA+TGG | 0.471700 | 3.4:+95564188 | None:intergenic |
| AAGGAATCACAAAATGGATT+GGG | 0.476468 | 3.4:-95563669 | MS.gene72024:CDS |
| GCCTTGTCTGTGTCTGAGGA+TGG | 0.481902 | 3.4:+95563958 | None:intergenic |
| ATATTGCAAGCAACTTGGAT+TGG | 0.487324 | 3.4:-95563795 | MS.gene72024:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.4:-95564297 | MS.gene72024:CDS |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.494078 | 3.4:-95563340 | MS.gene72024:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 3.4:-95563622 | MS.gene72024:CDS |
| TCTGCACTGAACTGGCCTGT+CGG | 0.505960 | 3.4:+95563694 | None:intergenic |
| TCAGGATATTGCAAGCAACT+TGG | 0.506566 | 3.4:-95563800 | MS.gene72024:CDS |
| TGCCTGAATGGTTTCAGTGA+AGG | 0.506803 | 3.4:+95564155 | None:intergenic |
| GTCTAGCAGTTCTGGCAAGC+CGG | 0.512533 | 3.4:-95563887 | MS.gene72024:CDS |
| CAATGGTCTTGATCTTGACT+GGG | 0.517624 | 3.4:-95563986 | MS.gene72024:CDS |
| AGTTGTTATTTCTGGCAAGT+TGG | 0.519658 | 3.4:+95564010 | None:intergenic |
| TTGCAGAAGAGAATTGGAGT+TGG | 0.520791 | 3.4:+95564337 | None:intergenic |
| TGTAATGAGTAAACCGAAGT+TGG | 0.521710 | 3.4:+95563936 | None:intergenic |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 3.4:-95563612 | MS.gene72024:CDS |
| CTCTGATCAGATCACCCCAT+TGG | 0.524686 | 3.4:-95563836 | MS.gene72024:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 3.4:+95563480 | None:intergenic |
| TTGCTTGCAATATCCTGACC+TGG | 0.530546 | 3.4:+95563805 | None:intergenic |
| GCCAGAAATAACAACTTCAA+TGG | 0.532857 | 3.4:-95564003 | MS.gene72024:CDS |
| CTGCTGTTATCTGCTGCAGT+GGG | 0.533450 | 3.4:-95563862 | MS.gene72024:CDS |
| TGACCTGGGTAGTATTCCAA+TGG | 0.537501 | 3.4:+95563820 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.4:+95563408 | None:intergenic |
| CTGTTATCTGCTGCAGTGGG+TGG | 0.540115 | 3.4:-95563859 | MS.gene72024:CDS |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 3.4:+95563610 | None:intergenic |
| GCAGCAGATAACAGCAGTGC+CGG | 0.543725 | 3.4:+95563868 | None:intergenic |
| GACACAGACAAGGCCAACTT+CGG | 0.549309 | 3.4:-95563949 | MS.gene72024:CDS |
| GTTGGCCTTGTCTGTGTCTG+AGG | 0.557959 | 3.4:+95563954 | None:intergenic |
| CTGCAAATGCACAGAACAAG+TGG | 0.562193 | 3.4:+95564238 | None:intergenic |
| GGCCAGTTCAGTGCAGATGA+AGG | 0.565062 | 3.4:-95563688 | MS.gene72024:CDS |
| ATTGGAATACTACCCAGGTC+AGG | 0.570178 | 3.4:-95563818 | MS.gene72024:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 3.4:+95564252 | None:intergenic |
| ATTGGAGTTGGAGAATCATG+AGG | 0.580602 | 3.4:+95564349 | None:intergenic |
| TAAAGCTACACAGGGGCTTG+GGG | 0.584711 | 3.4:-95563554 | MS.gene72024:CDS |
| GCAGGTGGTTGTGTCGTGGT+TGG | 0.585458 | 3.4:+95563730 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.4:-95563425 | MS.gene72024:CDS |
| TGAGGAGAGTAGAAATCAAG+AGG | 0.589315 | 3.4:+95564367 | None:intergenic |
| TTGCAGAAGAAATGGTGACT+TGG | 0.590390 | 3.4:+95564196 | None:intergenic |
| CAAGGATATAATAAATGTTG+GGG | 0.596445 | 3.4:-95563521 | MS.gene72024:CDS |
| AGAAGAAATGGTGACTTGGT+TGG | 0.609583 | 3.4:+95564200 | None:intergenic |
| GCTTGGGGCAGTGAAGTACA+AGG | 0.610199 | 3.4:-95563539 | MS.gene72024:CDS |
| ACCCCATTGGAATACTACCC+AGG | 0.610645 | 3.4:-95563823 | MS.gene72024:CDS |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 3.4:-95563457 | MS.gene72024:CDS |
| GCAAAAGCTGAAATTAAAGG+TGG | 0.612217 | 3.4:-95564318 | MS.gene72024:CDS |
| ACTGCTGTTATCTGCTGCAG+TGG | 0.613986 | 3.4:-95563863 | MS.gene72024:CDS |
| TGCAGCTTCTCTAGCATGGG+CGG | 0.626467 | 3.4:-95563173 | MS.gene72024:intron |
| TGCTTGCAATATCCTGACCT+GGG | 0.628937 | 3.4:+95563806 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 3.4:+95564274 | None:intergenic |
| TCCATCCTCAGACACAGACA+AGG | 0.662423 | 3.4:-95563959 | MS.gene72024:CDS |
| AGGAGCAGGTGGTTGTGTCG+TGG | 0.663999 | 3.4:+95563726 | None:intergenic |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.4:-95563356 | MS.gene72024:CDS |
| TCGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.4:-95563930 | MS.gene72024:CDS |
| CGTGGTTGGATAACTATCTG+AGG | 0.680417 | 3.4:+95563744 | None:intergenic |
| TGCAAATGCACAGAACAAGT+GGG | 0.684809 | 3.4:+95564239 | None:intergenic |
| ACCTGGGTAGTATTCCAATG+GGG | 0.748799 | 3.4:+95563822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGGATATAATAAATGTT+GGG | - | chr3.4:95564039-95564058 | MS.gene72024:CDS | 20.0% |
| !! | TACAAGGATATAATAAATGT+TGG | - | chr3.4:95564038-95564057 | MS.gene72024:CDS | 20.0% |
| !! | TCAAAAATATCATGGTTATT+AGG | + | chr3.4:95563987-95564006 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | - | chr3.4:95564090-95564109 | MS.gene72024:CDS | 20.0% |
| !!! | TAGCTTTATCAAAAATATCA+TGG | + | chr3.4:95563995-95564014 | None:intergenic | 20.0% |
| ! | CAAGGATATAATAAATGTTG+GGG | - | chr3.4:95564040-95564059 | MS.gene72024:CDS | 25.0% |
| ! | GCAATAATTAGTAACATATG+TGG | + | chr3.4:95564084-95564103 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | - | chr3.4:95564089-95564108 | MS.gene72024:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.4:95563527-95563546 | None:intergenic | 25.0% |
| !! | ATTTTTGATAAAGCTACACA+GGG | - | chr3.4:95563999-95564018 | MS.gene72024:CDS | 25.0% |
| !!! | GAATGAATGTTTTTTTGAGT+AGG | + | chr3.4:95563175-95563194 | None:intergenic | 25.0% |
| !!! | TATTTTTGATAAAGCTACAC+AGG | - | chr3.4:95563998-95564017 | MS.gene72024:CDS | 25.0% |
| CAACGAAGCTATGTTTAATT+AGG | + | chr3.4:95564262-95564281 | None:intergenic | 30.0% | |
| TCTGCAAAAGCTGAAATTAA+AGG | - | chr3.4:95563240-95563259 | MS.gene72024:intron | 30.0% | |
| ! | AAAACCCTTTTATCAATTGG+TGG | - | chr3.4:95563444-95563463 | MS.gene72024:CDS | 30.0% |
| ! | AAGGAATCACAAAATGGATT+GGG | - | chr3.4:95563892-95563911 | MS.gene72024:CDS | 30.0% |
| ! | GTGAAAACCCTTTTATCAAT+TGG | - | chr3.4:95563441-95563460 | MS.gene72024:CDS | 30.0% |
| ! | TTTTTGATAAAGCTACACAG+GGG | - | chr3.4:95564000-95564019 | MS.gene72024:CDS | 30.0% |
| !! | ACCATTGAAGTTGTTATTTC+TGG | + | chr3.4:95563562-95563581 | None:intergenic | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr3.4:95563312-95563331 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.4:95564204-95564223 | MS.gene72024:CDS | 35.0% | |
| ATATTGCAAGCAACTTGGAT+TGG | - | chr3.4:95563766-95563785 | MS.gene72024:CDS | 35.0% | |
| CAGATGAAGGAATCACAAAA+TGG | - | chr3.4:95563886-95563905 | MS.gene72024:CDS | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | - | chr3.4:95563924-95563943 | MS.gene72024:CDS | 35.0% | |
| CTGAAATTAAAGGTGGCTAT+TGG | - | chr3.4:95563250-95563269 | MS.gene72024:intron | 35.0% | |
| CTGATTGTGAGTCATTCTAA+CGG | - | chr3.4:95564342-95564361 | MS.gene72024:CDS | 35.0% | |
| GAAGGAATCACAAAATGGAT+TGG | - | chr3.4:95563891-95563910 | MS.gene72024:CDS | 35.0% | |
| GATTGTTTGGATACTTTGCT+TGG | - | chr3.4:95564180-95564199 | MS.gene72024:CDS | 35.0% | |
| GCAAAAGCTGAAATTAAAGG+TGG | - | chr3.4:95563243-95563262 | MS.gene72024:intron | 35.0% | |
| GCCAGAAATAACAACTTCAA+TGG | - | chr3.4:95563558-95563577 | MS.gene72024:CDS | 35.0% | |
| GGCACAAAAATTTGCCAATA+TGG | - | chr3.4:95563485-95563504 | MS.gene72024:CDS | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.4:95564205-95564224 | MS.gene72024:CDS | 35.0% | |
| TATTGCAAGCAACTTGGATT+GGG | - | chr3.4:95563767-95563786 | MS.gene72024:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | - | chr3.4:95563923-95563942 | MS.gene72024:CDS | 35.0% | |
| TGATTGTGAGTCATTCTAAC+GGG | - | chr3.4:95564343-95564362 | MS.gene72024:CDS | 35.0% | |
| TGTAATGAGTAAACCGAAGT+TGG | + | chr3.4:95563628-95563647 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr3.4:95563350-95563369 | None:intergenic | 35.0% |
| ! | GATAACTATCTGAGGTGAAA+AGG | + | chr3.4:95563812-95563831 | None:intergenic | 35.0% |
| ! | GCAAATTTTTGTGCCAAAGT+AGG | + | chr3.4:95563480-95563499 | None:intergenic | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.4:95564171-95564190 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCAAGT+TGG | + | chr3.4:95563554-95563573 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | - | chr3.4:95563897-95563916 | MS.gene72024:CDS | 35.0% |
| AACCTTCACTGAAACCATTC+AGG | - | chr3.4:95563404-95563423 | MS.gene72024:CDS | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | - | chr3.4:95564099-95564118 | MS.gene72024:CDS | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.4:95563215-95563234 | None:intergenic | 40.0% | |
| CCCACCACCAATTGATAAAA+GGG | + | chr3.4:95563451-95563470 | None:intergenic | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | + | chr3.4:95563313-95563332 | None:intergenic | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | + | chr3.4:95563290-95563309 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.4:95563264-95563283 | MS.gene72024:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.4:95564158-95564177 | MS.gene72024:CDS | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | - | chr3.4:95563949-95563968 | MS.gene72024:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | - | chr3.4:95564046-95564065 | MS.gene72024:CDS | 40.0% | |
| TCAGGATATTGCAAGCAACT+TGG | - | chr3.4:95563761-95563780 | MS.gene72024:CDS | 40.0% | |
| TCGGTTTACTCATTACAGAG+TGG | - | chr3.4:95563631-95563650 | MS.gene72024:CDS | 40.0% | |
| TGAACTACTCTTTGCCTGAA+TGG | + | chr3.4:95563421-95563440 | None:intergenic | 40.0% | |
| TGAGGAGAGTAGAAATCAAG+AGG | + | chr3.4:95563197-95563216 | None:intergenic | 40.0% | |
| TGCAAATGCACAGAACAAGT+GGG | + | chr3.4:95563325-95563344 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.4:95564104-95564123 | MS.gene72024:CDS | 40.0% | |
| TTGCAGAAGAAATGGTGACT+TGG | + | chr3.4:95563368-95563387 | None:intergenic | 40.0% | |
| TTGCAGAAGAGAATTGGAGT+TGG | + | chr3.4:95563227-95563246 | None:intergenic | 40.0% | |
| ! | ACCCTTTTATCAATTGGTGG+TGG | - | chr3.4:95563447-95563466 | MS.gene72024:CDS | 40.0% |
| ! | CAATGGTCTTGATCTTGACT+GGG | - | chr3.4:95563575-95563594 | MS.gene72024:CDS | 40.0% |
| ! | CAGCTTTTGCAGAAGAGAAT+TGG | + | chr3.4:95563233-95563252 | None:intergenic | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.4:95563520-95563539 | None:intergenic | 40.0% |
| ! | TCAATGGTCTTGATCTTGAC+TGG | - | chr3.4:95563574-95563593 | MS.gene72024:CDS | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3.4:95564385-95564404 | MS.gene72024:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3.4:95564384-95564403 | MS.gene72024:CDS | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr3.4:95563364-95563383 | None:intergenic | 40.0% |
| !! | CCCTTTTATCAATTGGTGGT+GGG | - | chr3.4:95563448-95563467 | MS.gene72024:CDS | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.4:95564167-95564186 | MS.gene72024:CDS | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | + | chr3.4:95563927-95563946 | None:intergenic | 40.0% |
| !!! | CCTTTTATCAATTGGTGGTG+GGG | - | chr3.4:95563449-95563468 | MS.gene72024:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+GGG | - | chr3.4:95563450-95563469 | MS.gene72024:CDS | 40.0% |
| ACCTGGGTAGTATTCCAATG+GGG | + | chr3.4:95563742-95563761 | None:intergenic | 45.0% | |
| AGCTGCGTTTGCAGAAGAAA+TGG | + | chr3.4:95563376-95563395 | None:intergenic | 45.0% | |
| ATAAAGCTACACAGGGGCTT+GGG | - | chr3.4:95564006-95564025 | MS.gene72024:CDS | 45.0% | |
| ATTGGAATACTACCCAGGTC+AGG | - | chr3.4:95563743-95563762 | MS.gene72024:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.4:95564136-95564155 | MS.gene72024:CDS | 45.0% | |
| CCCCACCACCAATTGATAAA+AGG | + | chr3.4:95563452-95563471 | None:intergenic | 45.0% | |
| CGTGGTTGGATAACTATCTG+AGG | + | chr3.4:95563820-95563839 | None:intergenic | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | + | chr3.4:95563954-95563973 | None:intergenic | 45.0% | |
| CTGCAAATGCACAGAACAAG+TGG | + | chr3.4:95563326-95563345 | None:intergenic | 45.0% | |
| GACCTGGGTAGTATTCCAAT+GGG | + | chr3.4:95563743-95563762 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | - | chr3.4:95563939-95563958 | MS.gene72024:CDS | 45.0% | |
| TGACCTGGGTAGTATTCCAA+TGG | + | chr3.4:95563744-95563763 | None:intergenic | 45.0% | |
| TGCCTGAATGGTTTCAGTGA+AGG | + | chr3.4:95563409-95563428 | None:intergenic | 45.0% | |
| TGCTTGCAATATCCTGACCT+GGG | + | chr3.4:95563758-95563777 | None:intergenic | 45.0% | |
| TTCCTTCATCTGCACTGAAC+TGG | + | chr3.4:95563878-95563897 | None:intergenic | 45.0% | |
| TTGCTTGCAATATCCTGACC+TGG | + | chr3.4:95563759-95563778 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.4:95564156-95564175 | None:intergenic | 45.0% | |
| AACTGGGCTCTTTCTCAAGC+AGG | - | chr3.4:95564221-95564240 | MS.gene72024:CDS | 50.0% | |
| ACCCAAGAGTCTAGCAGTTC+TGG | - | chr3.4:95563666-95563685 | MS.gene72024:CDS | 50.0% | |
| ACCCCATTGGAATACTACCC+AGG | - | chr3.4:95563738-95563757 | MS.gene72024:CDS | 50.0% | |
| ACTGCTGTTATCTGCTGCAG+TGG | - | chr3.4:95563698-95563717 | MS.gene72024:CDS | 50.0% | |
| CTCTGATCAGATCACCCCAT+TGG | - | chr3.4:95563725-95563744 | MS.gene72024:CDS | 50.0% | |
| CTGCTGTTATCTGCTGCAGT+GGG | - | chr3.4:95563699-95563718 | MS.gene72024:CDS | 50.0% | |
| GACACAGACAAGGCCAACTT+CGG | - | chr3.4:95563612-95563631 | MS.gene72024:CDS | 50.0% | |
| GATAAAGCTACACAGGGGCT+TGG | - | chr3.4:95564005-95564024 | MS.gene72024:CDS | 50.0% | |
| GCCAGAACTGCTAGACTCTT+GGG | + | chr3.4:95563670-95563689 | None:intergenic | 50.0% | |
| TAAAGCTACACAGGGGCTTG+GGG | - | chr3.4:95564007-95564026 | MS.gene72024:CDS | 50.0% | |
| TCCATCCTCAGACACAGACA+AGG | - | chr3.4:95563602-95563621 | MS.gene72024:CDS | 50.0% | |
| TGCCAGAACTGCTAGACTCT+TGG | + | chr3.4:95563671-95563690 | None:intergenic | 50.0% | |
| ! | GCTCCTTTGAAAAACCCGAC+AGG | - | chr3.4:95563852-95563871 | MS.gene72024:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.4:95563515-95563534 | None:intergenic | 50.0% |
| !! | ACTGGCTTGGCTAGCCATAT+TGG | + | chr3.4:95563502-95563521 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAAAGGAGCAGG+TGG | + | chr3.4:95563849-95563868 | None:intergenic | 50.0% |
| !! | GTCGGGTTTTTCAAAGGAGC+AGG | + | chr3.4:95563852-95563871 | None:intergenic | 50.0% |
| !! | TGGCCTGTCGGGTTTTTCAA+AGG | + | chr3.4:95563858-95563877 | None:intergenic | 50.0% |
| !! | TTATCAATTGGTGGTGGGGG+TGG | - | chr3.4:95563453-95563472 | MS.gene72024:CDS | 50.0% |
| CTGTTATCTGCTGCAGTGGG+TGG | - | chr3.4:95563702-95563721 | MS.gene72024:CDS | 55.0% | |
| GCAGCAGATAACAGCAGTGC+CGG | + | chr3.4:95563696-95563715 | None:intergenic | 55.0% | |
| GCCTTGTCTGTGTCTGAGGA+TGG | + | chr3.4:95563606-95563625 | None:intergenic | 55.0% | |
| GCTTGGGGCAGTGAAGTACA+AGG | - | chr3.4:95564022-95564041 | MS.gene72024:CDS | 55.0% | |
| GGCCAGTTCAGTGCAGATGA+AGG | - | chr3.4:95563873-95563892 | MS.gene72024:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+GGG | - | chr3.4:95564225-95564244 | MS.gene72024:CDS | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3.4:95564388-95564407 | MS.gene72024:CDS | 55.0% | |
| TGGGCTCTTTCTCAAGCAGG+TGG | - | chr3.4:95564224-95564243 | MS.gene72024:CDS | 55.0% | |
| ! | GTCTAGCAGTTCTGGCAAGC+CGG | - | chr3.4:95563674-95563693 | MS.gene72024:CDS | 55.0% |
| ! | TCTGCACTGAACTGGCCTGT+CGG | + | chr3.4:95563870-95563889 | None:intergenic | 55.0% |
| !! | GTTGGCCTTGTCTGTGTCTG+AGG | + | chr3.4:95563610-95563629 | None:intergenic | 55.0% |
| AGGAGCAGGTGGTTGTGTCG+TGG | + | chr3.4:95563838-95563857 | None:intergenic | 60.0% | |
| GCAGGTGGTTGTGTCGTGGT+TGG | + | chr3.4:95563834-95563853 | None:intergenic | 60.0% | |
| TGGTGGGGGTGGTCCTACTT+TGG | - | chr3.4:95563464-95563483 | MS.gene72024:CDS | 60.0% | |
| ! | CTGCACTGAACTGGCCTGTC+GGG | + | chr3.4:95563869-95563888 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95563168 | 95564415 | 95563168 | ID=MS.gene72024 |
| chr3.4 | mRNA | 95563168 | 95564415 | 95563168 | ID=MS.gene72024.t1;Parent=MS.gene72024 |
| chr3.4 | exon | 95563341 | 95564415 | 95563341 | ID=MS.gene72024.t1.exon1;Parent=MS.gene72024.t1 |
| chr3.4 | CDS | 95563341 | 95564415 | 95563341 | ID=cds.MS.gene72024.t1;Parent=MS.gene72024.t1 |
| chr3.4 | exon | 95563168 | 95563190 | 95563168 | ID=MS.gene72024.t1.exon2;Parent=MS.gene72024.t1 |
| chr3.4 | CDS | 95563168 | 95563190 | 95563168 | ID=cds.MS.gene72024.t1;Parent=MS.gene72024.t1 |
| Gene Sequence |
| Protein sequence |
