Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014610.t1 | XP_013462046.2 | 94.7 | 264 | 14 | 0 | 1 | 264 | 139 | 402 | 1.30E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014610.t1 | O81862 | 50.4 | 260 | 118 | 5 | 1 | 251 | 109 | 366 | 1.5e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014610.t1 | A0A396J6K9 | 94.7 | 264 | 14 | 0 | 1 | 264 | 139 | 402 | 9.5e-145 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40706 | MS.gene014610 | PPI |
| MS.gene036626 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene72023 | PPI |
| MS.gene014610 | MS.gene40707 | PPI |
| MS.gene72024 | MS.gene014610 | PPI |
| MS.gene40256 | MS.gene014610 | PPI |
| MS.gene58750 | MS.gene014610 | PPI |
| MS.gene021944 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene43244 | PPI |
| MS.gene014610 | MS.gene021954 | PPI |
| MS.gene44682 | MS.gene014610 | PPI |
| MS.gene055584 | MS.gene014610 | PPI |
| MS.gene014609 | MS.gene014610 | PPI |
| MS.gene40255 | MS.gene014610 | PPI |
| MS.gene44679 | MS.gene014610 | PPI |
| MS.gene40257 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene48549 | PPI |
| MS.gene72022 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene57747 | PPI |
| MS.gene014611 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene40705 | PPI |
| MS.gene48549 | MS.gene014610 | PPI |
| MS.gene014610 | MS.gene041428 | PPI |
| MS.gene53841 | MS.gene014610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014610.t1 | MTR_3g110280 | 96.341 | 246 | 9 | 0 | 1 | 246 | 114 | 359 | 4.06e-178 | 494 |
| MS.gene014610.t1 | MTR_3g110320 | 85.317 | 252 | 37 | 0 | 1 | 252 | 113 | 364 | 4.79e-162 | 454 |
| MS.gene014610.t1 | MTR_3g110320 | 85.425 | 247 | 36 | 0 | 1 | 247 | 113 | 359 | 8.91e-159 | 446 |
| MS.gene014610.t1 | MTR_4g116920 | 78.138 | 247 | 40 | 1 | 1 | 247 | 113 | 345 | 6.46e-141 | 400 |
| MS.gene014610.t1 | MTR_1g013150 | 36.981 | 265 | 152 | 4 | 1 | 252 | 121 | 383 | 1.39e-51 | 173 |
| MS.gene014610.t1 | MTR_4g116990 | 36.122 | 263 | 154 | 5 | 1 | 251 | 122 | 382 | 3.82e-49 | 167 |
| MS.gene014610.t1 | MTR_4g117030 | 33.333 | 282 | 168 | 6 | 1 | 268 | 71 | 346 | 1.61e-45 | 162 |
| MS.gene014610.t1 | MTR_4g117000 | 34.601 | 263 | 158 | 6 | 1 | 251 | 116 | 376 | 2.47e-45 | 157 |
| MS.gene014610.t1 | MTR_4g117040 | 36.704 | 267 | 144 | 8 | 1 | 250 | 109 | 367 | 6.14e-45 | 161 |
| MS.gene014610.t1 | MTR_4g117020 | 34.470 | 264 | 153 | 6 | 1 | 250 | 108 | 365 | 9.44e-43 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014610.t1 | AT4G19810 | 52.308 | 260 | 113 | 5 | 1 | 251 | 109 | 366 | 8.23e-84 | 256 |
| MS.gene014610.t1 | AT4G19810 | 52.308 | 260 | 113 | 5 | 1 | 251 | 109 | 366 | 8.23e-84 | 256 |
| MS.gene014610.t1 | AT4G19820 | 50.385 | 260 | 118 | 5 | 1 | 251 | 107 | 364 | 1.73e-76 | 237 |
| MS.gene014610.t1 | AT4G19800 | 43.060 | 281 | 139 | 6 | 1 | 263 | 88 | 365 | 1.16e-68 | 218 |
| MS.gene014610.t1 | AT4G19720 | 44.318 | 264 | 135 | 5 | 1 | 257 | 98 | 356 | 2.54e-65 | 208 |
| MS.gene014610.t1 | AT4G19760 | 46.038 | 265 | 125 | 8 | 1 | 251 | 105 | 365 | 3.48e-65 | 208 |
| MS.gene014610.t1 | AT4G19750 | 45.627 | 263 | 121 | 8 | 1 | 248 | 97 | 352 | 6.75e-65 | 207 |
| MS.gene014610.t1 | AT4G19770 | 41.406 | 256 | 140 | 4 | 1 | 248 | 1 | 254 | 1.63e-59 | 190 |
| MS.gene014610.t1 | AT4G19730 | 43.220 | 236 | 114 | 6 | 1 | 219 | 100 | 332 | 3.10e-49 | 166 |
| MS.gene014610.t1 | AT4G19740 | 37.696 | 191 | 105 | 5 | 24 | 204 | 24 | 210 | 1.05e-32 | 119 |
Find 67 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 3.1:+88325773 | None:intergenic |
| TCATGAATTCTATGTTTATT+AGG | 0.202131 | 3.1:+88325348 | None:intergenic |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 3.1:-88325393 | MS.gene014610:CDS |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 3.1:-88325165 | MS.gene014610:CDS |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 3.1:-88325446 | MS.gene014610:CDS |
| ATAAAGCTACGCAGGGATTA+GGG | 0.294851 | 3.1:-88325326 | MS.gene014610:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 3.1:+88325380 | None:intergenic |
| GATAAAGCTACGCAGGGATT+AGG | 0.321139 | 3.1:-88325327 | MS.gene014610:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 3.1:+88325457 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.349055 | 3.1:-88325174 | MS.gene014610:CDS |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 3.1:-88325666 | MS.gene014610:CDS |
| GATAACTATCTGAGATAAAA+AGG | 0.373862 | 3.1:+88325523 | None:intergenic |
| CTGCACTAAATTGGCCGGTT+GGG | 0.383400 | 3.1:+88325466 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 3.1:-88325376 | MS.gene014610:CDS |
| TAACAACAGTACGGGCTTGC+CGG | 0.396736 | 3.1:+88325647 | None:intergenic |
| GACGTTGAAATGACCAACTT+TGG | 0.415190 | 3.1:-88325720 | MS.gene014610:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 3.1:-88325674 | MS.gene014610:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.1:-88325565 | MS.gene014610:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 3.1:-88325383 | MS.gene014610:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 3.1:-88325233 | MS.gene014610:CDS |
| ATATTGAACAAGACAACAAT+TGG | 0.467582 | 3.1:-88325128 | MS.gene014610:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.1:-88325566 | MS.gene014610:CDS |
| CTCAGAATTACTGCTTCAAA+GGG | 0.473408 | 3.1:-88325242 | MS.gene014610:CDS |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.1:-88325571 | MS.gene014610:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.1:+88325501 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 3.1:-88325435 | MS.gene014610:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.484655 | 3.1:-88325758 | MS.gene014610:CDS |
| TCTGCACTAAATTGGCCGGT+TGG | 0.503768 | 3.1:+88325465 | None:intergenic |
| TGTAATGAGTAAACCAAAGT+TGG | 0.506140 | 3.1:+88325707 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 3.1:-88325445 | MS.gene014610:CDS |
| GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 3.1:+88325729 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 3.1:+88325591 | None:intergenic |
| GCTCAGAATTACTGCTTCAA+AGG | 0.515724 | 3.1:-88325243 | MS.gene014610:CDS |
| TTCATCTGCACTAAATTGGC+CGG | 0.515888 | 3.1:+88325461 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 3.1:-88325111 | MS.gene014610:intron |
| CTTTACACTAGATTTGCCCC+AGG | 0.531539 | 3.1:+88323777 | None:intergenic |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.1:+88325179 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.1:+88325576 | None:intergenic |
| TGCAGCAGATAACAACAGTA+CGG | 0.550766 | 3.1:+88325638 | None:intergenic |
| AATTCATGATAAAGCTACGC+AGG | 0.550930 | 3.1:-88325334 | MS.gene014610:CDS |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 3.1:+88325781 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 3.1:-88325441 | MS.gene014610:CDS |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.557488 | 3.1:+88325757 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 3.1:-88325630 | MS.gene014610:CDS |
| GCAGTAATTCTGAGCGTATG+TGG | 0.561135 | 3.1:+88325251 | None:intergenic |
| GGCCAATTTAGTGCAGATGA+AGG | 0.583988 | 3.1:-88325459 | MS.gene014610:CDS |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 3.1:-88325440 | MS.gene014610:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 3.1:+88325381 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.1:-88325196 | MS.gene014610:CDS |
| ATCTAGTGTAAAGCATGTTG+TGG | 0.588380 | 3.1:-88323767 | MS.gene014610:CDS |
| GATACTGCCAGTCAAGATCA+AGG | 0.589592 | 3.1:+88325751 | None:intergenic |
| GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 3.1:+88325725 | None:intergenic |
| GCAGCAGATAACAACAGTAC+GGG | 0.596002 | 3.1:+88325639 | None:intergenic |
| TACAGAGTGGAGAGCTGCTG+TGG | 0.596100 | 3.1:-88325688 | MS.gene014610:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.604955 | 3.1:-88325633 | MS.gene014610:CDS |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 3.1:-88325228 | MS.gene014610:CDS |
| ATTCATGATAAAGCTACGCA+GGG | 0.610111 | 3.1:-88325333 | MS.gene014610:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 3.1:-88325634 | MS.gene014610:CDS |
| TTTGCAGCTTCTCAAGCCTG+GGG | 0.621387 | 3.1:-88323793 | MS.gene014610:intron |
| ATTAGGGGCAGTGAAGTACA+AGG | 0.624997 | 3.1:-88325310 | MS.gene014610:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 3.1:-88325774 | MS.gene014610:CDS |
| TAAAGCTACGCAGGGATTAG+GGG | 0.652308 | 3.1:-88325325 | MS.gene014610:CDS |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.1:+88325577 | None:intergenic |
| TTGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.1:-88325701 | MS.gene014610:CDS |
| GTTGTGGCTATAATCACACC+AGG | 0.681153 | 3.1:-88323751 | MS.gene014610:intron |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 3.1:-88325594 | MS.gene014610:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 3.1:+88325665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAAAACAGTT+GGG | - | chr3.1:88325184-88325203 | MS.gene014610:CDS | 10.0% |
| !! | TAAAAAATACAATAATTGAA+GGG | + | chr3.1:88325466-88325485 | None:intergenic | 10.0% |
| !! | TAAAATAAAATAAAAACAGT+TGG | - | chr3.1:88325183-88325202 | MS.gene014610:CDS | 10.0% |
| !! | TAATTAAATGTCATTAAAAT+AGG | - | chr3.1:88325313-88325332 | MS.gene014610:CDS | 10.0% |
| !!! | TATTAAAAAATATTGTGTTT+TGG | - | chr3.1:88325417-88325436 | MS.gene014610:CDS | 10.0% |
| !!! | TTTATATCTTTTTTTTATCT+CGG | + | chr3.1:88325599-88325618 | None:intergenic | 10.0% |
| !! | ATTCTATACCAATATATAAA+GGG | - | chr3.1:88324709-88324728 | MS.gene014610:intron | 15.0% |
| !! | GTAAAAAATACAATAATTGA+AGG | + | chr3.1:88325467-88325486 | None:intergenic | 15.0% |
| !! | TAGAACATGAAAAAAAAATT+GGG | + | chr3.1:88325781-88325800 | None:intergenic | 15.0% |
| !! | TATTCTATACCAATATATAA+AGG | - | chr3.1:88324708-88324727 | MS.gene014610:intron | 15.0% |
| !! | TTAGAACATGAAAAAAAAAT+TGG | + | chr3.1:88325782-88325801 | None:intergenic | 15.0% |
| !!! | TTGTTGATTTTATATTGAAT+GGG | + | chr3.1:88325062-88325081 | None:intergenic | 15.0% |
| !!! | TTTGTTGATTTTATATTGAA+TGG | + | chr3.1:88325063-88325082 | None:intergenic | 15.0% |
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3.1:88324207-88324226 | MS.gene014610:intron | 20.0% |
| !! | AGAACATGAAAAAAAAATTG+GGG | + | chr3.1:88325780-88325799 | None:intergenic | 20.0% |
| !! | ATATTTACTATAAGTGATGT+TGG | + | chr3.1:88324592-88324611 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3.1:88324206-88324225 | MS.gene014610:intron | 20.0% |
| !! | TATAGTAAATATATGTGCAA+TGG | - | chr3.1:88324600-88324619 | MS.gene014610:intron | 20.0% |
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3.1:88324155-88324174 | None:intergenic | 20.0% |
| !! | TTCTATACCAATATATAAAG+GGG | - | chr3.1:88324710-88324729 | MS.gene014610:intron | 20.0% |
| !! | TTTGACATACCATTAAAAAT+AGG | + | chr3.1:88325650-88325669 | None:intergenic | 20.0% |
| !!! | CAGTAATCTATTTTTTTAAC+TGG | + | chr3.1:88324957-88324976 | None:intergenic | 20.0% |
| !!! | CTTGTGTTTTTTTACTAAAA+GGG | - | chr3.1:88324494-88324513 | MS.gene014610:intron | 20.0% |
| !!! | TCTTGTGTTTTTTTACTAAA+AGG | - | chr3.1:88324493-88324512 | MS.gene014610:intron | 20.0% |
| ! | AAAGCTCCTCTTAAAAAAAA+AGG | + | chr3.1:88324456-88324475 | None:intergenic | 25.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3.1:88324372-88324391 | MS.gene014610:intron | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3.1:88324208-88324227 | MS.gene014610:intron | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.1:88323695-88323714 | None:intergenic | 25.0% |
| !! | GAAACAAAGAATTTTCTAAG+TGG | + | chr3.1:88324918-88324937 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3.1:88323980-88323999 | None:intergenic | 25.0% |
| AGAACATCCCCTTTATATAT+TGG | + | chr3.1:88324720-88324739 | None:intergenic | 30.0% | |
| AGATAGAAATCAGAAAGAGA+AGG | - | chr3.1:88325130-88325149 | MS.gene014610:CDS | 30.0% | |
| AGTAGTAATCGAAACAAGTT+TGG | + | chr3.1:88324981-88325000 | None:intergenic | 30.0% | |
| ATAAAAAGTTAAGCACAAGC+AGG | + | chr3.1:88325263-88325282 | None:intergenic | 30.0% | |
| CAACAAAGCAGTGTTTAATT+AGG | + | chr3.1:88324431-88324450 | None:intergenic | 30.0% | |
| CAATAATTGAAGGGCAAAAT+TGG | + | chr3.1:88325457-88325476 | None:intergenic | 30.0% | |
| CAATATTGCTTCTATTGTTG+TGG | + | chr3.1:88325364-88325383 | None:intergenic | 30.0% | |
| CACAACAATAGAAGCAATAT+TGG | - | chr3.1:88325362-88325381 | MS.gene014610:CDS | 30.0% | |
| CCATTAAAAATAGGTGGTAA+AGG | + | chr3.1:88325641-88325660 | None:intergenic | 30.0% | |
| GACATACCATTAAAAATAGG+TGG | + | chr3.1:88325647-88325666 | None:intergenic | 30.0% | |
| GTACAACTGAATTTCACTTT+AGG | + | chr3.1:88325018-88325037 | None:intergenic | 30.0% | |
| GTAGTAATCGAAACAAGTTT+GGG | + | chr3.1:88324980-88324999 | None:intergenic | 30.0% | |
| TAAAAAGTTAAGCACAAGCA+GGG | + | chr3.1:88325262-88325281 | None:intergenic | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3.1:88323796-88323815 | None:intergenic | 30.0% | |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3.1:88324348-88324367 | MS.gene014610:intron | 30.0% |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3.1:88324055-88324074 | MS.gene014610:intron | 30.0% |
| !!! | ATCTTTTTTTTATCTCGGCA+TGG | + | chr3.1:88325594-88325613 | None:intergenic | 30.0% |
| !!! | CCTTTACCACCTATTTTTAA+TGG | - | chr3.1:88325638-88325657 | MS.gene014610:CDS | 30.0% |
| !!! | CTACTACTAGTTTTGTTTGT+AGG | - | chr3.1:88324845-88324864 | MS.gene014610:intron | 30.0% |
| !!! | GTTGCACCTTTTTTTTTAAG+AGG | - | chr3.1:88324447-88324466 | MS.gene014610:intron | 30.0% |
| AAAAAAATTGGGGTAGAACC+TGG | + | chr3.1:88325770-88325789 | None:intergenic | 35.0% | |
| AAAAAGTTAAGCACAAGCAG+GGG | + | chr3.1:88325261-88325280 | None:intergenic | 35.0% | |
| AAAATAAAAACAGTTGGGCC+TGG | - | chr3.1:88325189-88325208 | MS.gene014610:CDS | 35.0% | |
| AAAATAGGTGGTAAAGGTCA+AGG | + | chr3.1:88325635-88325654 | None:intergenic | 35.0% | |
| AAATAAAAACAGTTGGGCCT+GGG | - | chr3.1:88325190-88325209 | MS.gene014610:CDS | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3.1:88324166-88324185 | MS.gene014610:intron | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3.1:88324123-88324142 | None:intergenic | 35.0% | |
| ATCAACAAACAAAACACGTG+AGG | - | chr3.1:88325074-88325093 | MS.gene014610:intron | 35.0% | |
| ATCTAGTGTAAAGCATGTTG+TGG | - | chr3.1:88325733-88325752 | MS.gene014610:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.1:88323934-88323953 | MS.gene014610:intron | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3.1:88324167-88324186 | MS.gene014610:intron | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3.1:88324124-88324143 | MS.gene014610:intron | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3.1:88324258-88324277 | MS.gene014610:intron | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3.1:88324122-88324141 | None:intergenic | 35.0% | |
| GAAATCAGAAAGAGAAGGTA+TGG | - | chr3.1:88325135-88325154 | MS.gene014610:CDS | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3.1:88324117-88324136 | MS.gene014610:intron | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3.1:88324046-88324065 | None:intergenic | 35.0% | |
| TCAACAAACAAAACACGTGA+GGG | - | chr3.1:88325075-88325094 | MS.gene014610:intron | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.1:88323929-88323948 | MS.gene014610:intron | 35.0% | |
| TGATTTCTATCTGTATGAGC+AGG | + | chr3.1:88325122-88325141 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.1:88323935-88323954 | MS.gene014610:intron | 35.0% | |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3.1:88323799-88323818 | MS.gene014610:intron | 35.0% | |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3.1:88324060-88324079 | MS.gene014610:intron | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3.1:88324339-88324358 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3.1:88323722-88323741 | None:intergenic | 35.0% |
| !! | ATTTTTCAAAGTCTGCAGGA+AGG | - | chr3.1:88324779-88324798 | MS.gene014610:intron | 35.0% |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3.1:88324054-88324073 | MS.gene014610:intron | 35.0% |
| !!! | GTTTTGTTTGTAGGCATAAC+TGG | - | chr3.1:88324854-88324873 | MS.gene014610:intron | 35.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3.1:88324389-88324408 | MS.gene014610:intron | 40.0% | |
| ACGAAGCCTCTAAATTATCG+AGG | + | chr3.1:88324524-88324543 | None:intergenic | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3.1:88324174-88324193 | MS.gene014610:intron | 40.0% | |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3.1:88324065-88324084 | MS.gene014610:intron | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3.1:88324092-88324111 | MS.gene014610:intron | 40.0% | |
| GACGTTGAAATGACCAACTT+TGG | - | chr3.1:88323780-88323799 | MS.gene014610:CDS | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3.1:88323726-88323745 | MS.gene014610:intron | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3.1:88324257-88324276 | MS.gene014610:intron | 40.0% | |
| GGTCATCCTCGATAATTTAG+AGG | - | chr3.1:88324515-88324534 | MS.gene014610:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.1:88324326-88324345 | MS.gene014610:intron | 40.0% | |
| TAGGAACTCACAACAATCGA+TGG | - | chr3.1:88325332-88325351 | MS.gene014610:CDS | 40.0% | |
| TGCAGCAGATAACAACAGTA+CGG | + | chr3.1:88323865-88323884 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.1:88323926-88323945 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3.1:88324272-88324291 | MS.gene014610:intron | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3.1:88324042-88324061 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.1:88323927-88323946 | None:intergenic | 40.0% | |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.1:88323688-88323707 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3.1:88324095-88324114 | None:intergenic | 40.0% |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3.1:88324059-88324078 | MS.gene014610:intron | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3.1:88324335-88324354 | MS.gene014610:intron | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3.1:88323730-88323749 | None:intergenic | 40.0% |
| !! | GGCAATTTTTCAAAGTCTGC+AGG | - | chr3.1:88324775-88324794 | MS.gene014610:intron | 40.0% |
| AAAGGGGATGTTCTCCTTGA+GGG | - | chr3.1:88324726-88324745 | MS.gene014610:intron | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3.1:88324267-88324286 | MS.gene014610:intron | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3.1:88323866-88323885 | MS.gene014610:intron | 45.0% | |
| ATTAGGGGCAGTGAAGTACA+AGG | - | chr3.1:88324190-88324209 | MS.gene014610:intron | 45.0% | |
| CAAACAAAACACGTGAGGGT+AGG | - | chr3.1:88325079-88325098 | MS.gene014610:intron | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.1:88324304-88324323 | MS.gene014610:intron | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3.1:88323867-88323886 | MS.gene014610:intron | 45.0% | |
| CTTTACACTAGATTTGCCCC+AGG | + | chr3.1:88325726-88325745 | None:intergenic | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3.1:88324173-88324192 | MS.gene014610:intron | 45.0% | |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3.1:88323752-88323771 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3.1:88324107-88324126 | MS.gene014610:intron | 45.0% | |
| GCAGCAGATAACAACAGTAC+GGG | + | chr3.1:88323864-88323883 | None:intergenic | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3.1:88324252-88324271 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3.1:88324041-88324060 | MS.gene014610:intron | 45.0% | |
| GTCATTTCAACGTCTGAGGA+TGG | + | chr3.1:88323774-88323793 | None:intergenic | 45.0% | |
| GTTGGTCATTTCAACGTCTG+AGG | + | chr3.1:88323778-88323797 | None:intergenic | 45.0% | |
| GTTGTGGCTATAATCACACC+AGG | - | chr3.1:88325749-88325768 | MS.gene014610:CDS | 45.0% | |
| TAAAGCTACGCAGGGATTAG+GGG | - | chr3.1:88324175-88324194 | MS.gene014610:intron | 45.0% | |
| TAAAGGGGATGTTCTCCTTG+AGG | - | chr3.1:88324725-88324744 | MS.gene014610:intron | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr3.1:88323912-88323931 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.1:88324324-88324343 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr3.1:88323906-88323925 | MS.gene014610:intron | 45.0% |
| ! | CAGAAAGAGAAGGTATGGAC+TGG | - | chr3.1:88325140-88325159 | MS.gene014610:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3.1:88324020-88324039 | MS.gene014610:intron | 45.0% |
| ! | TTTTGCAGCTTCTCAAGCCT+GGG | - | chr3.1:88325706-88325725 | MS.gene014610:CDS | 45.0% |
| ! | TTTTTGCAGCTTCTCAAGCC+TGG | - | chr3.1:88325705-88325724 | MS.gene014610:CDS | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.1:88324021-88324040 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.1:88324020-88324039 | None:intergenic | 45.0% |
| !!! | AAAAAATAAGTTATTTTTTA+CGG | + | chr3.1:88325391-88325410 | None:intergenic | 5.0% |
| AAGTTAAGCACAAGCAGGGG+CGG | + | chr3.1:88325258-88325277 | None:intergenic | 50.0% | |
| ACCTGGACTCACAACACTAG+TGG | - | chr3.1:88324752-88324771 | MS.gene014610:intron | 50.0% | |
| CCTGGACTCACAACACTAGT+GGG | - | chr3.1:88324753-88324772 | MS.gene014610:intron | 50.0% | |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3.1:88324037-88324056 | None:intergenic | 50.0% | |
| CTGGACTCACAACACTAGTG+GGG | - | chr3.1:88324754-88324773 | MS.gene014610:intron | 50.0% | |
| TAACAACAGTACGGGCTTGC+CGG | + | chr3.1:88323856-88323875 | None:intergenic | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3.1:88324038-88324057 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3.1:88323870-88323889 | MS.gene014610:intron | 50.0% | |
| TTTGCAGCTTCTCAAGCCTG+GGG | - | chr3.1:88325707-88325726 | MS.gene014610:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3.1:88323742-88323761 | MS.gene014610:intron | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.1:88323683-88323702 | None:intergenic | 50.0% |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3.1:88324026-88324045 | None:intergenic | 50.0% |
| AAAAACAGTTGGGCCTGGGC+TGG | - | chr3.1:88325194-88325213 | MS.gene014610:CDS | 55.0% | |
| CCCACTAGTGTTGTGAGTCC+AGG | + | chr3.1:88324756-88324775 | None:intergenic | 55.0% | |
| GATTTGAGCAGAGCAGGGCA+GGG | + | chr3.1:88325236-88325255 | None:intergenic | 55.0% | |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3.1:88323746-88323765 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.1:88324002-88324021 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3.1:88323812-88323831 | MS.gene014610:intron | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.1:88324017-88324036 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3.1:88323834-88323853 | MS.gene014610:intron | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3.1:88323838-88323857 | None:intergenic | 60.0% | |
| GGATTTGAGCAGAGCAGGGC+AGG | + | chr3.1:88325237-88325256 | None:intergenic | 60.0% | |
| GGGGATGTTCTCCTTGAGGG+CGG | - | chr3.1:88324729-88324748 | MS.gene014610:intron | 60.0% | |
| ! | GGGCGGATTTGAGCAGAGCA+GGG | + | chr3.1:88325241-88325260 | None:intergenic | 60.0% |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3.1:88323826-88323845 | MS.gene014610:intron | 65.0% | |
| GCAGGGCAGGGTGTGGCAAT+AGG | + | chr3.1:88325224-88325243 | None:intergenic | 65.0% | |
| GGCAATAGGCACACCAGCCC+AGG | + | chr3.1:88325210-88325229 | None:intergenic | 65.0% | |
| GTTCTCCTTGAGGGCGGACC+TGG | - | chr3.1:88324735-88324754 | MS.gene014610:intron | 65.0% | |
| TGAGTCCAGGTCCGCCCTCA+AGG | + | chr3.1:88324743-88324762 | None:intergenic | 65.0% | |
| ! | GGGGCGGATTTGAGCAGAGC+AGG | + | chr3.1:88325242-88325261 | None:intergenic | 65.0% |
| GAGCAGAGCAGGGCAGGGTG+TGG | + | chr3.1:88325231-88325250 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88323672 | 88325850 | 88323672 | ID=MS.gene014610 |
| chr3.1 | mRNA | 88323672 | 88325850 | 88323672 | ID=MS.gene014610.t1;Parent=MS.gene014610 |
| chr3.1 | exon | 88325112 | 88325850 | 88325112 | ID=MS.gene014610.t1.exon1;Parent=MS.gene014610.t1 |
| chr3.1 | CDS | 88325112 | 88325850 | 88325112 | ID=cds.MS.gene014610.t1;Parent=MS.gene014610.t1 |
| chr3.1 | exon | 88323752 | 88323808 | 88323752 | ID=MS.gene014610.t1.exon2;Parent=MS.gene014610.t1 |
| chr3.1 | CDS | 88323752 | 88323808 | 88323752 | ID=cds.MS.gene014610.t1;Parent=MS.gene014610.t1 |
| chr3.1 | exon | 88323672 | 88323688 | 88323672 | ID=MS.gene014610.t1.exon3;Parent=MS.gene014610.t1 |
| chr3.1 | CDS | 88323672 | 88323688 | 88323672 | ID=cds.MS.gene014610.t1;Parent=MS.gene014610.t1 |
| Gene Sequence |
| Protein sequence |
