Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40706.t1 | XP_013462046.2 | 94.3 | 264 | 15 | 0 | 1 | 264 | 139 | 402 | 3.80E-144 | 520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40706.t1 | O81862 | 50.4 | 260 | 118 | 5 | 1 | 251 | 109 | 366 | 1.5e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40706.t1 | A0A396J6K9 | 94.3 | 264 | 15 | 0 | 1 | 264 | 139 | 402 | 2.8e-144 | 520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40706 | MS.gene014610 | PPI |
| MS.gene40706 | MS.gene036626 | PPI |
| MS.gene40706 | MS.gene40705 | PPI |
| MS.gene40706 | MS.gene44682 | PPI |
| MS.gene40706 | MS.gene041428 | PPI |
| MS.gene40706 | MS.gene58750 | PPI |
| MS.gene40706 | MS.gene021944 | PPI |
| MS.gene055584 | MS.gene40706 | PPI |
| MS.gene40706 | MS.gene72024 | PPI |
| MS.gene40706 | MS.gene40256 | PPI |
| MS.gene40255 | MS.gene40706 | PPI |
| MS.gene40706 | MS.gene43244 | PPI |
| MS.gene40706 | MS.gene014609 | PPI |
| MS.gene40706 | MS.gene72023 | PPI |
| MS.gene40706 | MS.gene40707 | PPI |
| MS.gene53841 | MS.gene40706 | PPI |
| MS.gene40706 | MS.gene021954 | PPI |
| MS.gene40706 | MS.gene72022 | PPI |
| MS.gene40706 | MS.gene53841 | PPI |
| MS.gene40706 | MS.gene014611 | PPI |
| MS.gene40706 | MS.gene48549 | PPI |
| MS.gene40706 | MS.gene40257 | PPI |
| MS.gene40706 | MS.gene40255 | PPI |
| MS.gene40706 | MS.gene44679 | PPI |
| MS.gene40706 | MS.gene055584 | PPI |
| MS.gene40706 | MS.gene57747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40706.t1 | MTR_3g110280 | 95.935 | 246 | 10 | 0 | 1 | 246 | 114 | 359 | 7.17e-178 | 494 |
| MS.gene40706.t1 | MTR_3g110320 | 84.921 | 252 | 38 | 0 | 1 | 252 | 113 | 364 | 2.01e-161 | 452 |
| MS.gene40706.t1 | MTR_3g110320 | 85.020 | 247 | 37 | 0 | 1 | 247 | 113 | 359 | 3.74e-158 | 444 |
| MS.gene40706.t1 | MTR_4g116920 | 77.733 | 247 | 41 | 1 | 1 | 247 | 113 | 345 | 3.16e-140 | 399 |
| MS.gene40706.t1 | MTR_1g013150 | 36.981 | 265 | 152 | 4 | 1 | 252 | 121 | 383 | 1.48e-51 | 173 |
| MS.gene40706.t1 | MTR_4g116990 | 36.122 | 263 | 154 | 5 | 1 | 251 | 122 | 382 | 3.40e-49 | 167 |
| MS.gene40706.t1 | MTR_4g117030 | 33.333 | 282 | 168 | 6 | 1 | 268 | 71 | 346 | 1.66e-45 | 162 |
| MS.gene40706.t1 | MTR_4g117000 | 34.601 | 263 | 158 | 6 | 1 | 251 | 116 | 376 | 2.11e-45 | 157 |
| MS.gene40706.t1 | MTR_4g117040 | 36.704 | 267 | 144 | 8 | 1 | 250 | 109 | 367 | 5.79e-45 | 161 |
| MS.gene40706.t1 | MTR_4g117020 | 34.470 | 264 | 153 | 6 | 1 | 250 | 108 | 365 | 9.82e-43 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40706.t1 | AT4G19810 | 52.308 | 260 | 113 | 5 | 1 | 251 | 109 | 366 | 5.94e-84 | 256 |
| MS.gene40706.t1 | AT4G19810 | 52.308 | 260 | 113 | 5 | 1 | 251 | 109 | 366 | 5.94e-84 | 256 |
| MS.gene40706.t1 | AT4G19820 | 50.385 | 260 | 118 | 5 | 1 | 251 | 107 | 364 | 1.29e-76 | 237 |
| MS.gene40706.t1 | AT4G19800 | 43.060 | 281 | 139 | 6 | 1 | 263 | 88 | 365 | 1.29e-68 | 218 |
| MS.gene40706.t1 | AT4G19720 | 44.318 | 264 | 135 | 5 | 1 | 257 | 98 | 356 | 1.99e-65 | 208 |
| MS.gene40706.t1 | AT4G19760 | 46.038 | 265 | 125 | 8 | 1 | 251 | 105 | 365 | 2.72e-65 | 208 |
| MS.gene40706.t1 | AT4G19750 | 45.627 | 263 | 121 | 8 | 1 | 248 | 97 | 352 | 5.32e-65 | 207 |
| MS.gene40706.t1 | AT4G19770 | 41.406 | 256 | 140 | 4 | 1 | 248 | 1 | 254 | 1.55e-59 | 190 |
| MS.gene40706.t1 | AT4G19730 | 43.220 | 236 | 114 | 6 | 1 | 219 | 100 | 332 | 2.79e-49 | 166 |
| MS.gene40706.t1 | AT4G19740 | 37.696 | 191 | 105 | 5 | 24 | 204 | 24 | 210 | 1.02e-32 | 119 |
Find 66 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 3.2:+88456103 | None:intergenic |
| TCATGAATTCTATGTTTATT+AGG | 0.202131 | 3.2:+88455678 | None:intergenic |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 3.2:-88455723 | MS.gene40706:CDS |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 3.2:-88455495 | MS.gene40706:CDS |
| CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 3.2:-88455776 | MS.gene40706:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 3.2:+88455710 | None:intergenic |
| GATAAAGCTACGCAGGGATT+AGG | 0.322601 | 3.2:-88455657 | MS.gene40706:CDS |
| TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 3.2:+88455787 | None:intergenic |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.349055 | 3.2:-88455504 | MS.gene40706:CDS |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 3.2:-88455996 | MS.gene40706:CDS |
| GATAACTATCTGAGATAAAA+AGG | 0.373862 | 3.2:+88455853 | None:intergenic |
| CTGCACTAAATTGGCCGGTT+GGG | 0.383400 | 3.2:+88455796 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 3.2:-88455706 | MS.gene40706:CDS |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 3.2:+88455977 | None:intergenic |
| ATAAAGCTACGCAGGGATTA+GGG | 0.403261 | 3.2:-88455656 | MS.gene40706:CDS |
| GACGTTGAAATGACCAACTT+TGG | 0.415190 | 3.2:-88456050 | MS.gene40706:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 3.2:-88456004 | MS.gene40706:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.2:-88455895 | MS.gene40706:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 3.2:-88455713 | MS.gene40706:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 3.2:-88455563 | MS.gene40706:CDS |
| ATATTGAACAAGACAACAAT+TGG | 0.467582 | 3.2:-88455458 | MS.gene40706:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.2:-88455896 | MS.gene40706:CDS |
| TCAAGATGTTGCAAACAACT+TGG | 0.472696 | 3.2:-88455901 | MS.gene40706:CDS |
| CTCAGAATTACTGCTTCAAA+GGG | 0.473408 | 3.2:-88455572 | MS.gene40706:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.2:+88455831 | None:intergenic |
| ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 3.2:-88455765 | MS.gene40706:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.484655 | 3.2:-88456088 | MS.gene40706:CDS |
| TCTGCACTAAATTGGCCGGT+TGG | 0.503768 | 3.2:+88455795 | None:intergenic |
| TGTAATGAGTAAACCAAAGT+TGG | 0.506140 | 3.2:+88456037 | None:intergenic |
| AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 3.2:-88455775 | MS.gene40706:CDS |
| GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 3.2:+88456059 | None:intergenic |
| GCTCAGAATTACTGCTTCAA+AGG | 0.515724 | 3.2:-88455573 | MS.gene40706:CDS |
| TTCATCTGCACTAAATTGGC+CGG | 0.515888 | 3.2:+88455791 | None:intergenic |
| TGACCAGGGTAGTACTTCAA+TGG | 0.517247 | 3.2:+88455921 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 3.2:-88455441 | MS.gene40706:intron |
| CTTTACACTAGATTTGCCCC+AGG | 0.531539 | 3.2:+88454106 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 3.2:-88455988 | MS.gene40706:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 3.2:+88455509 | None:intergenic |
| AATTCATGATAAAGCTACGC+AGG | 0.550930 | 3.2:-88455664 | MS.gene40706:CDS |
| TTGTTTGCAACATCTTGACC+AGG | 0.552247 | 3.2:+88455906 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 3.2:+88456111 | None:intergenic |
| GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 3.2:-88455771 | MS.gene40706:CDS |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.557488 | 3.2:+88456087 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 3.2:-88455960 | MS.gene40706:CDS |
| GCAGTAATTCTGAGCGTATG+TGG | 0.561135 | 3.2:+88455581 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 3.2:-88455963 | MS.gene40706:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.583988 | 3.2:-88455789 | MS.gene40706:CDS |
| AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 3.2:-88455770 | MS.gene40706:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 3.2:+88455711 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 3.2:-88455526 | MS.gene40706:CDS |
| ATCTAGTGTAAAGCATGTTG+TGG | 0.588380 | 3.2:-88454096 | MS.gene40706:CDS |
| GATACTGCCAGTCAAGATCA+AGG | 0.589592 | 3.2:+88456081 | None:intergenic |
| GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 3.2:+88456055 | None:intergenic |
| TACAGAGTGGAGAGCTGCTG+TGG | 0.596100 | 3.2:-88456018 | MS.gene40706:CDS |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 3.2:+88455969 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 3.2:-88455558 | MS.gene40706:CDS |
| ATTCATGATAAAGCTACGCA+GGG | 0.610111 | 3.2:-88455663 | MS.gene40706:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 3.2:-88455964 | MS.gene40706:CDS |
| ATTAGGGACAGTGAAGTACA+AGG | 0.620027 | 3.2:-88455640 | MS.gene40706:CDS |
| TTTGCAGCTTCTCAAGCCTG+GGG | 0.621387 | 3.2:-88454122 | MS.gene40706:intron |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 3.2:-88456104 | MS.gene40706:CDS |
| TTGGTTTACTCATTACAGAG+TGG | 0.678345 | 3.2:-88456031 | MS.gene40706:CDS |
| ACTCCATTGAAGTACTACCC+TGG | 0.680572 | 3.2:-88455924 | MS.gene40706:CDS |
| GTTGTGGCTATAATCACACC+AGG | 0.681153 | 3.2:-88454080 | MS.gene40706:intron |
| TGTTTGCAACATCTTGACCA+GGG | 0.689817 | 3.2:+88455907 | None:intergenic |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 3.2:+88455995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAAAACAGTT+GGG | - | chr3.2:88455514-88455533 | MS.gene40706:CDS | 10.0% |
| !! | TAAAAAATACAATAATTGAA+GGG | + | chr3.2:88455796-88455815 | None:intergenic | 10.0% |
| !! | TAAAATAAAATAAAAACAGT+TGG | - | chr3.2:88455513-88455532 | MS.gene40706:CDS | 10.0% |
| !! | TAATTAAATGTCATTAAAAT+AGG | - | chr3.2:88455643-88455662 | MS.gene40706:CDS | 10.0% |
| !!! | TATTAAAAAATATTGTGTTT+TGG | - | chr3.2:88455747-88455766 | MS.gene40706:CDS | 10.0% |
| !!! | TTTATATCTTTTTTTTATCT+CGG | + | chr3.2:88455929-88455948 | None:intergenic | 10.0% |
| !! | ATTCTATACCAATATATAAA+GGG | - | chr3.2:88455039-88455058 | MS.gene40706:intron | 15.0% |
| !! | GTAAAAAATACAATAATTGA+AGG | + | chr3.2:88455797-88455816 | None:intergenic | 15.0% |
| !! | TAGAACATGAAAAAAAAATT+GGG | + | chr3.2:88456111-88456130 | None:intergenic | 15.0% |
| !! | TATTCTATACCAATATATAA+AGG | - | chr3.2:88455038-88455057 | MS.gene40706:intron | 15.0% |
| !! | TTAGAACATGAAAAAAAAAT+TGG | + | chr3.2:88456112-88456131 | None:intergenic | 15.0% |
| !!! | TTGTTGATTTTATATTGAAT+GGG | + | chr3.2:88455392-88455411 | None:intergenic | 15.0% |
| !!! | TTTGTTGATTTTATATTGAA+TGG | + | chr3.2:88455393-88455412 | None:intergenic | 15.0% |
| !! | ACAAGGATATAAAAAATGAT+GGG | - | chr3.2:88454536-88454555 | MS.gene40706:intron | 20.0% |
| !! | AGAACATGAAAAAAAAATTG+GGG | + | chr3.2:88456110-88456129 | None:intergenic | 20.0% |
| !! | ATATTTACTATAAGTGATGT+TGG | + | chr3.2:88454922-88454941 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATGA+TGG | - | chr3.2:88454535-88454554 | MS.gene40706:intron | 20.0% |
| !! | TATAGTAAATATATGTGCAA+TGG | - | chr3.2:88454930-88454949 | MS.gene40706:intron | 20.0% |
| !! | TCATGAATTCTATGTTTATT+AGG | + | chr3.2:88454484-88454503 | None:intergenic | 20.0% |
| !! | TTCTATACCAATATATAAAG+GGG | - | chr3.2:88455040-88455059 | MS.gene40706:intron | 20.0% |
| !! | TTTGACATACCATTAAAAAT+AGG | + | chr3.2:88455980-88455999 | None:intergenic | 20.0% |
| !!! | CAGTAATCTATTTTTTTAAC+TGG | + | chr3.2:88455287-88455306 | None:intergenic | 20.0% |
| !!! | CTTGTGTTTTTTTACTAAAA+GGG | - | chr3.2:88454824-88454843 | MS.gene40706:intron | 20.0% |
| !!! | TCTTGTGTTTTTTTACTAAA+AGG | - | chr3.2:88454823-88454842 | MS.gene40706:intron | 20.0% |
| ! | AAGCTCCTCTTAAAAAAAAA+AGG | + | chr3.2:88454785-88454804 | None:intergenic | 25.0% |
| ! | ATATTGAACAAGACAACAAT+TGG | - | chr3.2:88454701-88454720 | MS.gene40706:intron | 25.0% |
| ! | CAAGGATATAAAAAATGATG+GGG | - | chr3.2:88454537-88454556 | MS.gene40706:intron | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | + | chr3.2:88454024-88454043 | None:intergenic | 25.0% |
| !! | GAAACAAAGAATTTTCTAAG+TGG | + | chr3.2:88455248-88455267 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAGATAAAA+AGG | + | chr3.2:88454309-88454328 | None:intergenic | 25.0% |
| !!! | TTGCACCTTTTTTTTTTAAG+AGG | - | chr3.2:88454777-88454796 | MS.gene40706:intron | 25.0% |
| AGAACATCCCCTTTATATAT+TGG | + | chr3.2:88455050-88455069 | None:intergenic | 30.0% | |
| AGATAGAAATCAGAAAGAGA+AGG | - | chr3.2:88455460-88455479 | MS.gene40706:CDS | 30.0% | |
| AGTAGTAATCGAAACAAGTT+TGG | + | chr3.2:88455311-88455330 | None:intergenic | 30.0% | |
| ATAAAAAGTTAAGCACAAGC+AGG | + | chr3.2:88455593-88455612 | None:intergenic | 30.0% | |
| CAACAAAGCAGTGTTTAATT+AGG | + | chr3.2:88454760-88454779 | None:intergenic | 30.0% | |
| CAATAATTGAAGGGCAAAAT+TGG | + | chr3.2:88455787-88455806 | None:intergenic | 30.0% | |
| CAATATTGCTTCTATTGTTG+TGG | + | chr3.2:88455694-88455713 | None:intergenic | 30.0% | |
| CACAACAATAGAAGCAATAT+TGG | - | chr3.2:88455692-88455711 | MS.gene40706:CDS | 30.0% | |
| CCATTAAAAATAGGTGGTAA+AGG | + | chr3.2:88455971-88455990 | None:intergenic | 30.0% | |
| GACATACCATTAAAAATAGG+TGG | + | chr3.2:88455977-88455996 | None:intergenic | 30.0% | |
| GTACAACTGAATTTCACTTT+AGG | + | chr3.2:88455348-88455367 | None:intergenic | 30.0% | |
| GTAGTAATCGAAACAAGTTT+GGG | + | chr3.2:88455310-88455329 | None:intergenic | 30.0% | |
| TAAAAAGTTAAGCACAAGCA+GGG | + | chr3.2:88455592-88455611 | None:intergenic | 30.0% | |
| TGTAATGAGTAAACCAAAGT+TGG | + | chr3.2:88454125-88454144 | None:intergenic | 30.0% | |
| ! | GTTTGTTTGGATATTTTGCT+TGG | - | chr3.2:88454677-88454696 | MS.gene40706:intron | 30.0% |
| !! | AGATGAAGGTATCACAAAAT+GGG | - | chr3.2:88454384-88454403 | MS.gene40706:intron | 30.0% |
| !!! | ATCTTTTTTTTATCTCGGCA+TGG | + | chr3.2:88455924-88455943 | None:intergenic | 30.0% |
| !!! | CCTTTACCACCTATTTTTAA+TGG | - | chr3.2:88455968-88455987 | MS.gene40706:CDS | 30.0% |
| !!! | CTACTACTAGTTTTGTTTGT+AGG | - | chr3.2:88455175-88455194 | MS.gene40706:intron | 30.0% |
| AAAAAAATTGGGGTAGAACC+TGG | + | chr3.2:88456100-88456119 | None:intergenic | 35.0% | |
| AAAAAGTTAAGCACAAGCAG+GGG | + | chr3.2:88455591-88455610 | None:intergenic | 35.0% | |
| AAAATAAAAACAGTTGGGCC+TGG | - | chr3.2:88455519-88455538 | MS.gene40706:CDS | 35.0% | |
| AAAATAGGTGGTAAAGGTCA+AGG | + | chr3.2:88455965-88455984 | None:intergenic | 35.0% | |
| AAATAAAAACAGTTGGGCCT+GGG | - | chr3.2:88455520-88455539 | MS.gene40706:CDS | 35.0% | |
| AATTCATGATAAAGCTACGC+AGG | - | chr3.2:88454495-88454514 | MS.gene40706:intron | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr3.2:88454452-88454471 | None:intergenic | 35.0% | |
| ATCAACAAACAAAACACGTG+AGG | - | chr3.2:88455404-88455423 | MS.gene40706:intron | 35.0% | |
| ATCTAGTGTAAAGCATGTTG+TGG | - | chr3.2:88456063-88456082 | MS.gene40706:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.2:88454263-88454282 | MS.gene40706:intron | 35.0% | |
| ATTCATGATAAAGCTACGCA+GGG | - | chr3.2:88454496-88454515 | MS.gene40706:intron | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr3.2:88454453-88454472 | MS.gene40706:intron | 35.0% | |
| CTCAGAATTACTGCTTCAAA+GGG | - | chr3.2:88454587-88454606 | MS.gene40706:intron | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr3.2:88454451-88454470 | None:intergenic | 35.0% | |
| GAAATCAGAAAGAGAAGGTA+TGG | - | chr3.2:88455465-88455484 | MS.gene40706:CDS | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr3.2:88454446-88454465 | MS.gene40706:intron | 35.0% | |
| TACCTTCATCTGCACTAAAT+TGG | + | chr3.2:88454375-88454394 | None:intergenic | 35.0% | |
| TCAACAAACAAAACACGTGA+GGG | - | chr3.2:88455405-88455424 | MS.gene40706:intron | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.2:88454258-88454277 | MS.gene40706:intron | 35.0% | |
| TGATTTCTATCTGTATGAGC+AGG | + | chr3.2:88455452-88455471 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.2:88454264-88454283 | MS.gene40706:intron | 35.0% | |
| TTGGTTTACTCATTACAGAG+TGG | - | chr3.2:88454128-88454147 | MS.gene40706:intron | 35.0% | |
| ! | AAGGTATCACAAAATGGGTA+GGG | - | chr3.2:88454389-88454408 | MS.gene40706:intron | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | + | chr3.2:88454668-88454687 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr3.2:88454051-88454070 | None:intergenic | 35.0% |
| !! | ATTTTTCAAAGTCTGCAGGA+AGG | - | chr3.2:88455109-88455128 | MS.gene40706:intron | 35.0% |
| !! | CAGATGAAGGTATCACAAAA+TGG | - | chr3.2:88454383-88454402 | MS.gene40706:intron | 35.0% |
| !!! | GTTTTGTTTGTAGGCATAAC+TGG | - | chr3.2:88455184-88455203 | MS.gene40706:intron | 35.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr3.2:88454718-88454737 | MS.gene40706:intron | 40.0% | |
| ACGAAGCCTCTAAATTATCG+AGG | + | chr3.2:88454854-88454873 | None:intergenic | 40.0% | |
| ATAAAGCTACGCAGGGATTA+GGG | - | chr3.2:88454503-88454522 | MS.gene40706:intron | 40.0% | |
| ATCACAAAATGGGTAGGGTT+AGG | - | chr3.2:88454394-88454413 | MS.gene40706:intron | 40.0% | |
| ATTAGGGACAGTGAAGTACA+AGG | - | chr3.2:88454519-88454538 | MS.gene40706:intron | 40.0% | |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr3.2:88454421-88454440 | MS.gene40706:intron | 40.0% | |
| GACGTTGAAATGACCAACTT+TGG | - | chr3.2:88454109-88454128 | MS.gene40706:CDS | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr3.2:88454055-88454074 | MS.gene40706:intron | 40.0% | |
| GCTCAGAATTACTGCTTCAA+AGG | - | chr3.2:88454586-88454605 | MS.gene40706:intron | 40.0% | |
| GGTCATCCTCGATAATTTAG+AGG | - | chr3.2:88454845-88454864 | MS.gene40706:intron | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr3.2:88454655-88454674 | MS.gene40706:intron | 40.0% | |
| TAGGAACTCACAACAATCGA+TGG | - | chr3.2:88455662-88455681 | MS.gene40706:CDS | 40.0% | |
| TGTTTGCAACATCTTGACCA+GGG | + | chr3.2:88454255-88454274 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr3.2:88454601-88454620 | MS.gene40706:intron | 40.0% | |
| TTCATCTGCACTAAATTGGC+CGG | + | chr3.2:88454371-88454390 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+AGG | + | chr3.2:88454256-88454275 | None:intergenic | 40.0% | |
| ! | TATGAACGATTTTCGGCTAC+TGG | + | chr3.2:88454017-88454036 | None:intergenic | 40.0% |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr3.2:88454424-88454443 | None:intergenic | 40.0% |
| !! | GAAGGTATCACAAAATGGGT+AGG | - | chr3.2:88454388-88454407 | MS.gene40706:intron | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | - | chr3.2:88454664-88454683 | MS.gene40706:intron | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr3.2:88454059-88454078 | None:intergenic | 40.0% |
| !! | GGCAATTTTTCAAAGTCTGC+AGG | - | chr3.2:88455105-88455124 | MS.gene40706:intron | 40.0% |
| AAAGGGGATGTTCTCCTTGA+GGG | - | chr3.2:88455056-88455075 | MS.gene40706:intron | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr3.2:88454596-88454615 | MS.gene40706:intron | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr3.2:88454195-88454214 | MS.gene40706:intron | 45.0% | |
| CAAACAAAACACGTGAGGGT+AGG | - | chr3.2:88455409-88455428 | MS.gene40706:intron | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr3.2:88454633-88454652 | MS.gene40706:intron | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr3.2:88454196-88454215 | MS.gene40706:intron | 45.0% | |
| CTTTACACTAGATTTGCCCC+AGG | + | chr3.2:88456056-88456075 | None:intergenic | 45.0% | |
| GATAAAGCTACGCAGGGATT+AGG | - | chr3.2:88454502-88454521 | MS.gene40706:intron | 45.0% | |
| GATACTGCCAGTCAAGATCA+AGG | + | chr3.2:88454081-88454100 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr3.2:88454436-88454455 | MS.gene40706:intron | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr3.2:88454193-88454212 | None:intergenic | 45.0% | |
| GCAGTAATTCTGAGCGTATG+TGG | + | chr3.2:88454581-88454600 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr3.2:88454370-88454389 | MS.gene40706:intron | 45.0% | |
| GTCATTTCAACGTCTGAGGA+TGG | + | chr3.2:88454103-88454122 | None:intergenic | 45.0% | |
| GTTGGTCATTTCAACGTCTG+AGG | + | chr3.2:88454107-88454126 | None:intergenic | 45.0% | |
| GTTGTGGCTATAATCACACC+AGG | - | chr3.2:88456079-88456098 | MS.gene40706:CDS | 45.0% | |
| TAAAGGGGATGTTCTCCTTG+AGG | - | chr3.2:88455055-88455074 | MS.gene40706:intron | 45.0% | |
| TGACCAGGGTAGTACTTCAA+TGG | + | chr3.2:88454241-88454260 | None:intergenic | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr3.2:88454653-88454672 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+TGG | - | chr3.2:88454235-88454254 | MS.gene40706:intron | 45.0% |
| ! | CAGAAAGAGAAGGTATGGAC+TGG | - | chr3.2:88455470-88455489 | MS.gene40706:CDS | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+CGG | - | chr3.2:88454349-88454368 | MS.gene40706:intron | 45.0% |
| ! | TTTTGCAGCTTCTCAAGCCT+GGG | - | chr3.2:88456036-88456055 | MS.gene40706:CDS | 45.0% |
| ! | TTTTTGCAGCTTCTCAAGCC+TGG | - | chr3.2:88456035-88456054 | MS.gene40706:CDS | 45.0% |
| !! | GGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.2:88454350-88454369 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.2:88454349-88454368 | None:intergenic | 45.0% |
| !!! | AAAAAATAAGTTATTTTTTA+CGG | + | chr3.2:88455721-88455740 | None:intergenic | 5.0% |
| AAGTTAAGCACAAGCAGGGG+CGG | + | chr3.2:88455588-88455607 | None:intergenic | 50.0% | |
| ACCTGGACTCACAACACTAG+TGG | - | chr3.2:88455082-88455101 | MS.gene40706:intron | 50.0% | |
| CCTGGACTCACAACACTAGT+GGG | - | chr3.2:88455083-88455102 | MS.gene40706:intron | 50.0% | |
| CTGCACTAAATTGGCCGGTT+GGG | + | chr3.2:88454366-88454385 | None:intergenic | 50.0% | |
| CTGGACTCACAACACTAGTG+GGG | - | chr3.2:88455084-88455103 | MS.gene40706:intron | 50.0% | |
| TCTGCACTAAATTGGCCGGT+TGG | + | chr3.2:88454367-88454386 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr3.2:88454199-88454218 | MS.gene40706:intron | 50.0% | |
| TTTGCAGCTTCTCAAGCCTG+GGG | - | chr3.2:88456037-88456056 | MS.gene40706:CDS | 50.0% | |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr3.2:88454071-88454090 | MS.gene40706:intron | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | + | chr3.2:88454012-88454031 | None:intergenic | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr3.2:88454185-88454204 | None:intergenic | 50.0% |
| !! | TGGCCGGTTGGGTTTTTCAA+AGG | + | chr3.2:88454355-88454374 | None:intergenic | 50.0% |
| AAAAACAGTTGGGCCTGGGC+TGG | - | chr3.2:88455524-88455543 | MS.gene40706:CDS | 55.0% | |
| CCCACTAGTGTTGTGAGTCC+AGG | + | chr3.2:88455086-88455105 | None:intergenic | 55.0% | |
| GATTTGAGCAGAGCAGGGCA+GGG | + | chr3.2:88455566-88455585 | None:intergenic | 55.0% | |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr3.2:88454075-88454094 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.2:88454331-88454350 | None:intergenic | 55.0% | |
| TACAGAGTGGAGAGCTGCTG+TGG | - | chr3.2:88454141-88454160 | MS.gene40706:intron | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.2:88454346-88454365 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr3.2:88454163-88454182 | MS.gene40706:intron | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr3.2:88454167-88454186 | None:intergenic | 60.0% | |
| GGATTTGAGCAGAGCAGGGC+AGG | + | chr3.2:88455567-88455586 | None:intergenic | 60.0% | |
| GGGGATGTTCTCCTTGAGGG+CGG | - | chr3.2:88455059-88455078 | MS.gene40706:intron | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr3.2:88454171-88454190 | MS.gene40706:intron | 60.0% | |
| ! | GGGCGGATTTGAGCAGAGCA+GGG | + | chr3.2:88455571-88455590 | None:intergenic | 60.0% |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr3.2:88454155-88454174 | MS.gene40706:intron | 65.0% | |
| GCAGGGCAGGGTGTGGCAAT+AGG | + | chr3.2:88455554-88455573 | None:intergenic | 65.0% | |
| GGCAATAGGCACACCAGCCC+AGG | + | chr3.2:88455540-88455559 | None:intergenic | 65.0% | |
| GTTCTCCTTGAGGGCGGACC+TGG | - | chr3.2:88455065-88455084 | MS.gene40706:intron | 65.0% | |
| TGAGTCCAGGTCCGCCCTCA+AGG | + | chr3.2:88455073-88455092 | None:intergenic | 65.0% | |
| ! | GGGGCGGATTTGAGCAGAGC+AGG | + | chr3.2:88455572-88455591 | None:intergenic | 65.0% |
| GAGCAGAGCAGGGCAGGGTG+TGG | + | chr3.2:88455561-88455580 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88454001 | 88456180 | 88454001 | ID=MS.gene40706 |
| chr3.2 | mRNA | 88454001 | 88456180 | 88454001 | ID=MS.gene40706.t1;Parent=MS.gene40706 |
| chr3.2 | exon | 88455442 | 88456180 | 88455442 | ID=MS.gene40706.t1.exon1;Parent=MS.gene40706.t1 |
| chr3.2 | CDS | 88455442 | 88456180 | 88455442 | ID=cds.MS.gene40706.t1;Parent=MS.gene40706.t1 |
| chr3.2 | exon | 88454081 | 88454137 | 88454081 | ID=MS.gene40706.t1.exon2;Parent=MS.gene40706.t1 |
| chr3.2 | CDS | 88454081 | 88454137 | 88454081 | ID=cds.MS.gene40706.t1;Parent=MS.gene40706.t1 |
| chr3.2 | exon | 88454001 | 88454017 | 88454001 | ID=MS.gene40706.t1.exon3;Parent=MS.gene40706.t1 |
| chr3.2 | CDS | 88454001 | 88454017 | 88454001 | ID=cds.MS.gene40706.t1;Parent=MS.gene40706.t1 |
| Gene Sequence |
| Protein sequence |
