Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036626.t1 | PNY09053.1 | 88.8 | 358 | 39 | 1 | 1 | 357 | 1 | 358 | 2.60E-180 | 641.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036626.t1 | O81862 | 50.7 | 365 | 164 | 7 | 11 | 364 | 9 | 368 | 1.4e-89 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036626.t1 | A0A2K3P1D5 | 88.8 | 358 | 39 | 1 | 1 | 357 | 1 | 358 | 1.9e-180 | 641.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036626 | MS.gene014610 | PPI |
| MS.gene40706 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene40705 | PPI |
| MS.gene036626 | MS.gene041428 | PPI |
| MS.gene72024 | MS.gene036626 | PPI |
| MS.gene40256 | MS.gene036626 | PPI |
| MS.gene58750 | MS.gene036626 | PPI |
| MS.gene021944 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene43244 | PPI |
| MS.gene036626 | MS.gene72023 | PPI |
| MS.gene036626 | MS.gene40707 | PPI |
| MS.gene036626 | MS.gene021944 | PPI |
| MS.gene055584 | MS.gene036626 | PPI |
| MS.gene014609 | MS.gene036626 | PPI |
| MS.gene40255 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene021954 | PPI |
| MS.gene44679 | MS.gene036626 | PPI |
| MS.gene40257 | MS.gene036626 | PPI |
| MS.gene72022 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene72022 | PPI |
| MS.gene44682 | MS.gene036626 | PPI |
| MS.gene014611 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene48549 | PPI |
| MS.gene53841 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene57747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036626.t1 | MTR_3g110280 | 85.515 | 359 | 50 | 1 | 1 | 357 | 1 | 359 | 0.0 | 620 |
| MS.gene036626.t1 | MTR_4g116920 | 86.630 | 359 | 33 | 2 | 1 | 358 | 1 | 345 | 0.0 | 617 |
| MS.gene036626.t1 | MTR_3g110320 | 80.716 | 363 | 69 | 1 | 1 | 362 | 1 | 363 | 0.0 | 604 |
| MS.gene036626.t1 | MTR_3g110320 | 80.780 | 359 | 68 | 1 | 1 | 358 | 1 | 359 | 0.0 | 598 |
| MS.gene036626.t1 | MTR_1g013150 | 37.079 | 356 | 204 | 6 | 22 | 362 | 32 | 382 | 4.43e-69 | 222 |
| MS.gene036626.t1 | MTR_4g116990 | 38.655 | 357 | 186 | 9 | 30 | 363 | 37 | 383 | 3.07e-63 | 206 |
| MS.gene036626.t1 | MTR_4g117000 | 35.838 | 346 | 207 | 7 | 30 | 363 | 35 | 377 | 3.46e-63 | 206 |
| MS.gene036626.t1 | MTR_4g117020 | 35.279 | 377 | 217 | 10 | 3 | 363 | 2 | 367 | 2.69e-62 | 213 |
| MS.gene036626.t1 | MTR_4g117040 | 37.465 | 355 | 196 | 9 | 26 | 363 | 24 | 369 | 1.15e-61 | 211 |
| MS.gene036626.t1 | MTR_4g117030 | 36.795 | 337 | 188 | 9 | 41 | 361 | 1 | 328 | 1.49e-59 | 204 |
| MS.gene036626.t1 | MTR_4g117800 | 36.364 | 176 | 107 | 2 | 6 | 179 | 4 | 176 | 1.66e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036626.t1 | AT4G19810 | 52.186 | 366 | 157 | 7 | 11 | 364 | 9 | 368 | 5.29e-120 | 352 |
| MS.gene036626.t1 | AT4G19810 | 52.186 | 366 | 157 | 7 | 11 | 364 | 9 | 368 | 5.29e-120 | 352 |
| MS.gene036626.t1 | AT4G19820 | 47.253 | 364 | 180 | 6 | 10 | 364 | 6 | 366 | 4.91e-103 | 308 |
| MS.gene036626.t1 | AT4G19760 | 46.361 | 371 | 170 | 10 | 17 | 363 | 1 | 366 | 3.74e-96 | 291 |
| MS.gene036626.t1 | AT4G19750 | 45.938 | 357 | 174 | 9 | 17 | 359 | 1 | 352 | 1.73e-94 | 286 |
| MS.gene036626.t1 | AT4G19800 | 46.313 | 339 | 169 | 6 | 30 | 359 | 7 | 341 | 1.50e-93 | 285 |
| MS.gene036626.t1 | AT4G19720 | 46.319 | 326 | 162 | 6 | 46 | 364 | 33 | 352 | 1.70e-89 | 273 |
| MS.gene036626.t1 | AT4G19730 | 41.593 | 339 | 166 | 8 | 17 | 330 | 1 | 332 | 2.76e-71 | 226 |
| MS.gene036626.t1 | AT4G19770 | 41.923 | 260 | 141 | 4 | 112 | 363 | 1 | 258 | 1.39e-58 | 191 |
| MS.gene036626.t1 | AT4G19740 | 37.173 | 191 | 106 | 5 | 135 | 315 | 24 | 210 | 9.27e-29 | 111 |
Find 95 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCAATAGCCACCTTTAA+TGG | 0.214652 | 8.4:-13419788 | None:intergenic |
| GTTACTAATTATTGCTTCAT+AGG | 0.237729 | 8.4:+13420621 | MS.gene036626:CDS |
| TCCCACCACCAATTGATAAT+AGG | 0.244910 | 8.4:-13419984 | None:intergenic |
| GCCAAGCAAAATGGTTTGTT+TGG | 0.270489 | 8.4:+13420699 | MS.gene036626:CDS |
| CCCACCACCAATTGATAATA+GGG | 0.272819 | 8.4:-13419983 | None:intergenic |
| ACCACAAACGCTGCCATTAA+AGG | 0.289713 | 8.4:+13419775 | MS.gene036626:CDS |
| GTTGATTATGCCAAGCAAAA+TGG | 0.313698 | 8.4:+13420690 | MS.gene036626:CDS |
| ATCAAGCTACACAGGGGCTT+GGG | 0.319160 | 8.4:+13420538 | MS.gene036626:CDS |
| CAACTTTGGTTTACTCATTA+CGG | 0.336590 | 8.4:+13420158 | MS.gene036626:CDS |
| ACCTTTAATGGCAGCGTTTG+TGG | 0.356603 | 8.4:-13419776 | None:intergenic |
| GCCGAAGAGTCTAGCAGTTC+TGG | 0.357634 | 8.4:+13420198 | MS.gene036626:CDS |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 8.4:+13420736 | MS.gene036626:CDS |
| ACAAAGATATAATAAATGTT+GGG | 0.382597 | 8.4:+13420571 | MS.gene036626:CDS |
| CAGCGTTTGTGGTGGATAAC+TGG | 0.392336 | 8.4:-13419765 | None:intergenic |
| CTGCCATTAAAGGTGGCTAT+TGG | 0.398685 | 8.4:+13419785 | MS.gene036626:CDS |
| TACCTTCATCTACACTGAAT+TGG | 0.403692 | 8.4:-13420407 | None:intergenic |
| TAGATGAAGGTATCACAAAA+TGG | 0.403845 | 8.4:+13420418 | MS.gene036626:CDS |
| GATCAAGCTACACAGGGGCT+TGG | 0.408064 | 8.4:+13420537 | MS.gene036626:CDS |
| GTGAAAACCCTATTATCAAT+TGG | 0.411073 | 8.4:+13419976 | MS.gene036626:CDS |
| CTCTGATCAGATCACCCCTT+TGG | 0.414677 | 8.4:+13420257 | MS.gene036626:CDS |
| TCGATGGTCTTGATCTTGAC+TGG | 0.423357 | 8.4:+13420106 | MS.gene036626:CDS |
| ATTGCTTCATAGGGACAGAT+TGG | 0.433223 | 8.4:+13420631 | MS.gene036626:CDS |
| GTCTTATCCGCGTCGGAGGA+TGG | 0.434776 | 8.4:-13420135 | None:intergenic |
| GAAGGTATCACAAAATGGAT+TGG | 0.445585 | 8.4:+13420423 | MS.gene036626:CDS |
| TTACTAATTATTGCTTCATA+GGG | 0.446458 | 8.4:+13420622 | MS.gene036626:CDS |
| GACGCGGATAAGACCAACTT+TGG | 0.447081 | 8.4:+13420144 | MS.gene036626:CDS |
| ATCACAAAATGGATTGGGTT+AGG | 0.453409 | 8.4:+13420429 | MS.gene036626:CDS |
| TACAAAGATATAATAAATGT+TGG | 0.455760 | 8.4:+13420570 | MS.gene036626:CDS |
| TATAATAAATGTTGGGGCGC+AGG | 0.456722 | 8.4:+13420578 | MS.gene036626:CDS |
| GAACAAGTGGGTGAAATAAG+AGG | 0.458120 | 8.4:-13419845 | None:intergenic |
| ACGACCTTTACATGTCAGAT+AGG | 0.459436 | 8.4:+13420337 | MS.gene036626:CDS |
| ATATTGCAAACAACTTGGAT+TGG | 0.476015 | 8.4:+13420298 | MS.gene036626:CDS |
| AAGGTATCACAAAATGGATT+GGG | 0.479422 | 8.4:+13420424 | MS.gene036626:CDS |
| TTCTGCAGCTTCTCAAGCAT+GGG | 0.481382 | 8.4:+13421328 | MS.gene036626:intron |
| TATTGCAAACAACTTGGATT+GGG | 0.481756 | 8.4:+13420299 | MS.gene036626:CDS |
| GTTGGTTGGTATTAGAATCA+AGG | 0.482451 | 8.4:-13419882 | None:intergenic |
| CGTAATGAGTAAACCAAAGT+TGG | 0.491887 | 8.4:-13420157 | None:intergenic |
| GTTATTTCTAGCAAGTTGAA+TGG | 0.492439 | 8.4:-13420079 | None:intergenic |
| TCAGGATATTGCAAACAACT+TGG | 0.496362 | 8.4:+13420293 | MS.gene036626:CDS |
| CGATGGTCTTGATCTTGACT+GGG | 0.498899 | 8.4:+13420107 | MS.gene036626:CDS |
| TTTCTGCAGCTTCTCAAGCA+TGG | 0.499088 | 8.4:+13421327 | MS.gene036626:intron |
| GCATTGGGTGTACCTTTCTA+CGG | 0.499133 | 8.4:+13420471 | MS.gene036626:CDS |
| AACCTTCACTGAAACCGTTC+AGG | 0.501026 | 8.4:+13419939 | MS.gene036626:CDS |
| TGGTGGTGGGAATTCAACTT+TGG | 0.502902 | 8.4:+13419996 | MS.gene036626:CDS |
| TGCAGCTTCTCAAGCATGGG+AGG | 0.503853 | 8.4:+13421331 | MS.gene036626:intron |
| ACCCTATTATCAATTGGTGG+TGG | 0.504311 | 8.4:+13419982 | MS.gene036626:CDS |
| TGCCTGAACGGTTTCAGTGA+AGG | 0.504697 | 8.4:-13419941 | None:intergenic |
| GCCAGAACTGCTAGACTCTT+CGG | 0.504881 | 8.4:-13420199 | None:intergenic |
| GATACCTATCTGACATGTAA+AGG | 0.511041 | 8.4:-13420341 | None:intergenic |
| AACTGGGCTCTTTCTCAAGC+AGG | 0.514071 | 8.4:+13420753 | MS.gene036626:CDS |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 8.4:-13419740 | None:intergenic |
| GGCTATTGGAATTCTGATAG+TGG | 0.524115 | 8.4:+13419799 | MS.gene036626:CDS |
| TACCTTTCTACGGTTTCAAG+TGG | 0.524260 | 8.4:+13420481 | MS.gene036626:CDS |
| GCAATAATTAGTAACATATG+TGG | 0.528980 | 8.4:-13420613 | None:intergenic |
| TCTACACTGAATTGGCCTGT+TGG | 0.531450 | 8.4:-13420399 | None:intergenic |
| CCCTATTATCAATTGGTGGT+GGG | 0.533806 | 8.4:+13419983 | MS.gene036626:CDS |
| GACCTGGGTAGTATTCCAAA+GGG | 0.538829 | 8.4:-13420272 | None:intergenic |
| CTCCACTTGAAACCGTAGAA+AGG | 0.540691 | 8.4:-13420483 | None:intergenic |
| CGTTCAGGCAAAGAGTAGTT+CGG | 0.545594 | 8.4:+13419954 | MS.gene036626:CDS |
| TTGTTTGCAATATCCTGACC+TGG | 0.547851 | 8.4:-13420288 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 8.4:+13420234 | MS.gene036626:CDS |
| CGAACTACTCTTTGCCTGAA+CGG | 0.560291 | 8.4:-13419953 | None:intergenic |
| CAGCAAATGCACAGAACAAG+TGG | 0.562193 | 8.4:-13419858 | None:intergenic |
| TTGCTTGGCATAATCAACCT+TGG | 0.564771 | 8.4:-13420685 | None:intergenic |
| TTTGGAATACTACCCAGGTC+AGG | 0.567695 | 8.4:+13420275 | MS.gene036626:CDS |
| GTTGGTCTTATCCGCGTCGG+AGG | 0.568312 | 8.4:-13420139 | None:intergenic |
| TCAAGCTACACAGGGGCTTG+GGG | 0.574229 | 8.4:+13420539 | MS.gene036626:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 8.4:-13419844 | None:intergenic |
| TACGGAGTGGAGAGCTGCTG+TGG | 0.585644 | 8.4:+13420176 | MS.gene036626:CDS |
| GGCCAATTCAGTGTAGATGA+AGG | 0.587139 | 8.4:+13420405 | MS.gene036626:CDS |
| TTGTGGTGGATAACTGGAGT+TGG | 0.587390 | 8.4:-13419759 | None:intergenic |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 8.4:+13420668 | MS.gene036626:CDS |
| TGACCTGGGTAGTATTCCAA+AGG | 0.587785 | 8.4:-13420273 | None:intergenic |
| CAAAGATATAATAAATGTTG+GGG | 0.588056 | 8.4:+13420572 | MS.gene036626:CDS |
| AAAACCCTATTATCAATTGG+TGG | 0.588303 | 8.4:+13419979 | MS.gene036626:CDS |
| TTTAATGGCAGCGTTTGTGG+TGG | 0.594547 | 8.4:-13419773 | None:intergenic |
| ACCCCTTTGGAATACTACCC+AGG | 0.599496 | 8.4:+13420270 | MS.gene036626:CDS |
| AGAAGAAATAGTGAGTTGGT+TGG | 0.600058 | 8.4:-13419896 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.603516 | 8.4:+13420231 | MS.gene036626:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 8.4:-13419729 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.610823 | 8.4:+13420636 | MS.gene036626:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.613628 | 8.4:+13420230 | MS.gene036626:CDS |
| GCTAGAAATAACAACTTCGA+TGG | 0.620728 | 8.4:+13420090 | MS.gene036626:CDS |
| TTGTAGAAGAAATAGTGAGT+TGG | 0.631938 | 8.4:-13419900 | None:intergenic |
| GCAGCAGATAACAACAGTGT+CGG | 0.646329 | 8.4:-13420225 | None:intergenic |
| GATCAATGTCAGAAACTGCA+AGG | 0.646791 | 8.4:-13419822 | None:intergenic |
| TGTTTGCAATATCCTGACCT+GGG | 0.647942 | 8.4:-13420287 | None:intergenic |
| TTGGTTTACTCATTACGGAG+TGG | 0.651665 | 8.4:+13420163 | MS.gene036626:CDS |
| AAAGTTGGTCTTATCCGCGT+CGG | 0.662235 | 8.4:-13420142 | None:intergenic |
| ACTGGAGTTGGAGAATCATG+AGG | 0.662538 | 8.4:-13419747 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.669351 | 8.4:+13419778 | MS.gene036626:CDS |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 8.4:+13420737 | MS.gene036626:CDS |
| AGCAAATGCACAGAACAAGT+GGG | 0.684809 | 8.4:-13419857 | None:intergenic |
| ACCTGGGTAGTATTCCAAAG+GGG | 0.736054 | 8.4:-13420271 | None:intergenic |
| GGAGTATCCATCCTCCGACG+CGG | 0.742661 | 8.4:+13420128 | MS.gene036626:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAGATATAATAAATGTT+GGG | + | chr8.4:13420571-13420590 | MS.gene036626:CDS | 15.0% |
| !! | CTACTTATTATATAATCATA+CGG | + | chr8.4:13420814-13420833 | MS.gene036626:intron | 15.0% |
| !! | TACAAAGATATAATAAATGT+TGG | + | chr8.4:13420570-13420589 | MS.gene036626:CDS | 15.0% |
| !! | TGATTATATAATAAGTAGAA+CGG | - | chr8.4:13420812-13420831 | None:intergenic | 15.0% |
| !! | TTTAGACCTATATATTTATT+CGG | + | chr8.4:13421154-13421173 | MS.gene036626:intron | 15.0% |
| !!! | TTGTTTGTTTGTTTTTTATA+TGG | + | chr8.4:13420843-13420862 | MS.gene036626:intron | 15.0% |
| !! | CAAAGATATAATAAATGTTG+GGG | + | chr8.4:13420572-13420591 | MS.gene036626:CDS | 20.0% |
| !! | TCAAAAATTTCATGGTTATT+AGG | - | chr8.4:13420519-13420538 | None:intergenic | 20.0% |
| !! | TTACTAATTATTGCTTCATA+GGG | + | chr8.4:13420622-13420641 | MS.gene036626:CDS | 20.0% |
| !!! | CTATCTATCTTTTTTGATAT+GGG | - | chr8.4:13421215-13421234 | None:intergenic | 20.0% |
| !!! | TCTATCTATCTTTTTTGATA+TGG | - | chr8.4:13421216-13421235 | None:intergenic | 20.0% |
| ! | GCAATAATTAGTAACATATG+TGG | - | chr8.4:13420616-13420635 | None:intergenic | 25.0% |
| ! | GTTACTAATTATTGCTTCAT+AGG | + | chr8.4:13420621-13420640 | MS.gene036626:CDS | 25.0% |
| ! | TAGCTTGATCAAAAATTTCA+TGG | - | chr8.4:13420527-13420546 | None:intergenic | 25.0% |
| !! | AAGAATCTATGAACGATTTT+CGG | - | chr8.4:13420059-13420078 | None:intergenic | 25.0% |
| !! | ATATGGCTAACTTCAAATTT+TGG | + | chr8.4:13420860-13420879 | MS.gene036626:intron | 25.0% |
| !!! | CTAACTTCAAATTTTGGTTT+AGG | + | chr8.4:13420866-13420885 | MS.gene036626:intron | 25.0% |
| AAAACCCTATTATCAATTGG+TGG | + | chr8.4:13419979-13419998 | MS.gene036626:CDS | 30.0% | |
| ATATTGCAAACAACTTGGAT+TGG | + | chr8.4:13420298-13420317 | MS.gene036626:CDS | 30.0% | |
| ATCAGTAGTATATCACCATT+CGG | + | chr8.4:13420980-13420999 | MS.gene036626:intron | 30.0% | |
| GAAATGGCATTAAGAATAAG+AGG | - | chr8.4:13421261-13421280 | None:intergenic | 30.0% | |
| GAATAAGAGGTAAAACTCTA+AGG | - | chr8.4:13421248-13421267 | None:intergenic | 30.0% | |
| GTGAAAACCCTATTATCAAT+TGG | + | chr8.4:13419976-13419995 | MS.gene036626:CDS | 30.0% | |
| TATTGCAAACAACTTGGATT+GGG | + | chr8.4:13420299-13420318 | MS.gene036626:CDS | 30.0% | |
| TTGTAGAAGAAATAGTGAGT+TGG | - | chr8.4:13419903-13419922 | None:intergenic | 30.0% | |
| ! | AAGGTATCACAAAATGGATT+GGG | + | chr8.4:13420424-13420443 | MS.gene036626:CDS | 30.0% |
| ! | AATTTTTGATCAAGCTACAC+AGG | + | chr8.4:13420530-13420549 | MS.gene036626:CDS | 30.0% |
| ! | ACCGGTTTAACCAATTTAAA+AGG | - | chr8.4:13421009-13421028 | None:intergenic | 30.0% |
| ! | ATTTTTGATCAAGCTACACA+GGG | + | chr8.4:13420531-13420550 | MS.gene036626:CDS | 30.0% |
| ! | CAACTTTGGTTTACTCATTA+CGG | + | chr8.4:13420158-13420177 | MS.gene036626:CDS | 30.0% |
| ! | GCCTTTTAAATTGGTTAAAC+CGG | + | chr8.4:13421005-13421024 | MS.gene036626:intron | 30.0% |
| ! | GTTTGTTTGGATATTTTGCT+TGG | + | chr8.4:13420712-13420731 | MS.gene036626:CDS | 30.0% |
| !! | GGCAAAAAAATTTGCTGATA+TGG | + | chr8.4:13420017-13420036 | MS.gene036626:CDS | 30.0% |
| !! | GTTATTTCTAGCAAGTTGAA+TGG | - | chr8.4:13420082-13420101 | None:intergenic | 30.0% |
| !! | TAGATGAAGGTATCACAAAA+TGG | + | chr8.4:13420418-13420437 | MS.gene036626:CDS | 30.0% |
| AACAAGTGGGTGAAATAAGA+GGG | - | chr8.4:13419847-13419866 | None:intergenic | 35.0% | |
| AGCGGTAATTAACTACTGAT+GGG | + | chr8.4:13421042-13421061 | MS.gene036626:intron | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | + | chr8.4:13420736-13420755 | MS.gene036626:CDS | 35.0% | |
| ATCATAGCGAGTCATTCTAA+TGG | + | chr8.4:13421288-13421307 | MS.gene036626:intron | 35.0% | |
| ATTCCAATAGCCACCTTTAA+TGG | - | chr8.4:13419791-13419810 | None:intergenic | 35.0% | |
| CCAAAAAGCAAACTAGCATT+GGG | + | chr8.4:13420456-13420475 | MS.gene036626:CDS | 35.0% | |
| CGCTATGATACAGTTTGAAA+TGG | - | chr8.4:13421277-13421296 | None:intergenic | 35.0% | |
| CGTAATGAGTAAACCAAAGT+TGG | - | chr8.4:13420160-13420179 | None:intergenic | 35.0% | |
| GAACGGAGCTATGTTTAATT+AGG | - | chr8.4:13420795-13420814 | None:intergenic | 35.0% | |
| GAATGGTGATATACTACTGA+TGG | - | chr8.4:13420981-13421000 | None:intergenic | 35.0% | |
| GATACCTATCTGACATGTAA+AGG | - | chr8.4:13420344-13420363 | None:intergenic | 35.0% | |
| GCTAGAAATAACAACTTCGA+TGG | + | chr8.4:13420090-13420109 | MS.gene036626:CDS | 35.0% | |
| GGTTTAGGCCTATATTTGTT+GGG | + | chr8.4:13420881-13420900 | MS.gene036626:intron | 35.0% | |
| GTTGATTATGCCAAGCAAAA+TGG | + | chr8.4:13420690-13420709 | MS.gene036626:CDS | 35.0% | |
| TACCTTCATCTACACTGAAT+TGG | - | chr8.4:13420410-13420429 | None:intergenic | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | + | chr8.4:13420737-13420756 | MS.gene036626:CDS | 35.0% | |
| TCAGGATATTGCAAACAACT+TGG | + | chr8.4:13420293-13420312 | MS.gene036626:CDS | 35.0% | |
| TCCAAAAAGCAAACTAGCAT+TGG | + | chr8.4:13420455-13420474 | MS.gene036626:CDS | 35.0% | |
| TGGTTTAGGCCTATATTTGT+TGG | + | chr8.4:13420880-13420899 | MS.gene036626:intron | 35.0% | |
| ! | AATTAACTACCGTTCGAGTT+AGG | + | chr8.4:13421076-13421095 | MS.gene036626:intron | 35.0% |
| ! | CAAGAGGAATGAATGCTTTT+TGG | - | chr8.4:13419716-13419735 | None:intergenic | 35.0% |
| ! | CATTCGGATGCCTTTTAAAT+TGG | + | chr8.4:13420996-13421015 | MS.gene036626:intron | 35.0% |
| ! | GTTGGTTGGTATTAGAATCA+AGG | - | chr8.4:13419885-13419904 | None:intergenic | 35.0% |
| ! | TCCAAACAAACCATTTTGCT+TGG | - | chr8.4:13420703-13420722 | None:intergenic | 35.0% |
| ! | TTTTTGATCAAGCTACACAG+GGG | + | chr8.4:13420532-13420551 | MS.gene036626:CDS | 35.0% |
| !! | AAAAGTATCCCTTGGGAATA+GGG | - | chr8.4:13421184-13421203 | None:intergenic | 35.0% |
| !! | AATTGACCAAAAGTATCCCT+TGG | - | chr8.4:13421192-13421211 | None:intergenic | 35.0% |
| !! | AGAAGAAATAGTGAGTTGGT+TGG | - | chr8.4:13419899-13419918 | None:intergenic | 35.0% |
| !! | ATCACAAAATGGATTGGGTT+AGG | + | chr8.4:13420429-13420448 | MS.gene036626:CDS | 35.0% |
| !! | ATTGACCAAAAGTATCCCTT+GGG | - | chr8.4:13421191-13421210 | None:intergenic | 35.0% |
| !! | CAATTTAAAAGGCATCCGAA+TGG | - | chr8.4:13420998-13421017 | None:intergenic | 35.0% |
| !! | GAAGGTATCACAAAATGGAT+TGG | + | chr8.4:13420423-13420442 | MS.gene036626:CDS | 35.0% |
| ACCCTATTATCAATTGGTGG+TGG | + | chr8.4:13419982-13420001 | MS.gene036626:CDS | 40.0% | |
| ACGACCTTTACATGTCAGAT+AGG | + | chr8.4:13420337-13420356 | MS.gene036626:CDS | 40.0% | |
| AGCAAATGCACAGAACAAGT+GGG | - | chr8.4:13419860-13419879 | None:intergenic | 40.0% | |
| ATCCCAAGAGATTGCTCTTT+AGG | - | chr8.4:13421125-13421144 | None:intergenic | 40.0% | |
| ATTGCTTCATAGGGACAGAT+TGG | + | chr8.4:13420631-13420650 | MS.gene036626:CDS | 40.0% | |
| CCGGTTTAAAAAGTGATGAG+CGG | + | chr8.4:13421024-13421043 | MS.gene036626:intron | 40.0% | |
| GAACAAGTGGGTGAAATAAG+AGG | - | chr8.4:13419848-13419867 | None:intergenic | 40.0% | |
| GAGCGGTAATTAACTACTGA+TGG | + | chr8.4:13421041-13421060 | MS.gene036626:intron | 40.0% | |
| GATCAATGTCAGAAACTGCA+AGG | - | chr8.4:13419825-13419844 | None:intergenic | 40.0% | |
| GCGGTAATTAACTACTGATG+GGG | + | chr8.4:13421043-13421062 | MS.gene036626:intron | 40.0% | |
| GGCTATTGGAATTCTGATAG+TGG | + | chr8.4:13419799-13419818 | MS.gene036626:CDS | 40.0% | |
| GGTCGGCCGAATAAATATAT+AGG | - | chr8.4:13421163-13421182 | None:intergenic | 40.0% | |
| TACCTTTCTACGGTTTCAAG+TGG | + | chr8.4:13420481-13420500 | MS.gene036626:CDS | 40.0% | |
| TATAATAAATGTTGGGGCGC+AGG | + | chr8.4:13420578-13420597 | MS.gene036626:CDS | 40.0% | |
| TCCTTAATCCCATGAGGATA+GGG | - | chr8.4:13420911-13420930 | None:intergenic | 40.0% | |
| TGCCTAAAGAGCAATCTCTT+GGG | + | chr8.4:13421120-13421139 | MS.gene036626:intron | 40.0% | |
| TGGTGATATACTACTGATGG+CGG | - | chr8.4:13420978-13420997 | None:intergenic | 40.0% | |
| TGTTTGCAATATCCTGACCT+GGG | - | chr8.4:13420290-13420309 | None:intergenic | 40.0% | |
| TTCACCTAGCAATTTCTCAC+AGG | + | chr8.4:13420939-13420958 | MS.gene036626:intron | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | + | chr8.4:13420636-13420655 | MS.gene036626:CDS | 40.0% | |
| TTCCTTAATCCCATGAGGAT+AGG | - | chr8.4:13420912-13420931 | None:intergenic | 40.0% | |
| TTGCTTGGCATAATCAACCT+TGG | - | chr8.4:13420688-13420707 | None:intergenic | 40.0% | |
| TTGGTTTACTCATTACGGAG+TGG | + | chr8.4:13420163-13420182 | MS.gene036626:CDS | 40.0% | |
| TTGTTTGCAATATCCTGACC+TGG | - | chr8.4:13420291-13420310 | None:intergenic | 40.0% | |
| ! | CCCACCACCAATTGATAATA+GGG | - | chr8.4:13419986-13420005 | None:intergenic | 40.0% |
| ! | CCCTATTATCAATTGGTGGT+GGG | + | chr8.4:13419983-13420002 | MS.gene036626:CDS | 40.0% |
| ! | CTATTCCCAAGGGATACTTT+TGG | + | chr8.4:13421183-13421202 | MS.gene036626:intron | 40.0% |
| ! | GCTCCTTTGAAAAATCCAAC+AGG | + | chr8.4:13420384-13420403 | MS.gene036626:CDS | 40.0% |
| ! | TATGAACGATTTTCGGCTAC+TGG | - | chr8.4:13420052-13420071 | None:intergenic | 40.0% |
| ! | TCCCACCACCAATTGATAAT+AGG | - | chr8.4:13419987-13420006 | None:intergenic | 40.0% |
| !! | CAAAAGTATCCCTTGGGAAT+AGG | - | chr8.4:13421185-13421204 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGTTTGTT+TGG | + | chr8.4:13420699-13420718 | MS.gene036626:CDS | 40.0% |
| !! | GTTGGATTTTTCAAAGGAGC+AGG | - | chr8.4:13420384-13420403 | None:intergenic | 40.0% |
| !! | TGGCCTGTTGGATTTTTCAA+AGG | - | chr8.4:13420390-13420409 | None:intergenic | 40.0% |
| !!! | CCCAATGCTAGTTTGCTTTT+TGG | - | chr8.4:13420459-13420478 | None:intergenic | 40.0% |
| !!! | CCGCTCATCACTTTTTAAAC+CGG | - | chr8.4:13421027-13421046 | None:intergenic | 40.0% |
| AACCTTCACTGAAACCGTTC+AGG | + | chr8.4:13419939-13419958 | MS.gene036626:CDS | 45.0% | |
| ACAAACGCTGCCATTAAAGG+TGG | + | chr8.4:13419778-13419797 | MS.gene036626:CDS | 45.0% | |
| ACCACAAACGCTGCCATTAA+AGG | + | chr8.4:13419775-13419794 | MS.gene036626:CDS | 45.0% | |
| ACCCTATCCTCATGGGATTA+AGG | + | chr8.4:13420907-13420926 | MS.gene036626:intron | 45.0% | |
| ACCTGGGTAGTATTCCAAAG+GGG | - | chr8.4:13420274-13420293 | None:intergenic | 45.0% | |
| ACCTTTAATGGCAGCGTTTG+TGG | - | chr8.4:13419779-13419798 | None:intergenic | 45.0% | |
| ACTGGAGTTGGAGAATCATG+AGG | - | chr8.4:13419750-13419769 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | + | chr8.4:13420230-13420249 | MS.gene036626:CDS | 45.0% | |
| AGGGTCAGCCCAACAAATAT+AGG | - | chr8.4:13420892-13420911 | None:intergenic | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | + | chr8.4:13420668-13420687 | MS.gene036626:CDS | 45.0% | |
| CAGCAAATGCACAGAACAAG+TGG | - | chr8.4:13419861-13419880 | None:intergenic | 45.0% | |
| CGAACTACTCTTTGCCTGAA+CGG | - | chr8.4:13419956-13419975 | None:intergenic | 45.0% | |
| CGTTCAGGCAAAGAGTAGTT+CGG | + | chr8.4:13419954-13419973 | MS.gene036626:CDS | 45.0% | |
| CTCCACTTGAAACCGTAGAA+AGG | - | chr8.4:13420486-13420505 | None:intergenic | 45.0% | |
| CTGCCATTAAAGGTGGCTAT+TGG | + | chr8.4:13419785-13419804 | MS.gene036626:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | + | chr8.4:13420231-13420250 | MS.gene036626:CDS | 45.0% | |
| GACCTGGGTAGTATTCCAAA+GGG | - | chr8.4:13420275-13420294 | None:intergenic | 45.0% | |
| GCAACTTCCTTAATCCCATG+AGG | - | chr8.4:13420917-13420936 | None:intergenic | 45.0% | |
| GCAGCAGATAACAACAGTGT+CGG | - | chr8.4:13420228-13420247 | None:intergenic | 45.0% | |
| GCATTGGGTGTACCTTTCTA+CGG | + | chr8.4:13420471-13420490 | MS.gene036626:CDS | 45.0% | |
| GGCCAATTCAGTGTAGATGA+AGG | + | chr8.4:13420405-13420424 | MS.gene036626:CDS | 45.0% | |
| GGTGATATACTACTGATGGC+GGG | - | chr8.4:13420977-13420996 | None:intergenic | 45.0% | |
| GTGCCTAAAGAGCAATCTCT+TGG | + | chr8.4:13421119-13421138 | MS.gene036626:intron | 45.0% | |
| TCACATGCACCTAACTCGAA+CGG | - | chr8.4:13421088-13421107 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTATTCCAA+AGG | - | chr8.4:13420276-13420295 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | - | chr8.4:13419732-13419751 | None:intergenic | 45.0% | |
| TTCTGCAGCTTCTCAAGCAT+GGG | + | chr8.4:13421328-13421347 | MS.gene036626:intron | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | - | chr8.4:13419743-13419762 | None:intergenic | 45.0% | |
| TTTAATGGCAGCGTTTGTGG+TGG | - | chr8.4:13419776-13419795 | None:intergenic | 45.0% | |
| TTTCTGCAGCTTCTCAAGCA+TGG | + | chr8.4:13421327-13421346 | MS.gene036626:intron | 45.0% | |
| ! | CGATGGTCTTGATCTTGACT+GGG | + | chr8.4:13420107-13420126 | MS.gene036626:CDS | 45.0% |
| ! | GTGATATACTACTGATGGCG+GGG | - | chr8.4:13420976-13420995 | None:intergenic | 45.0% |
| ! | TCGATGGTCTTGATCTTGAC+TGG | + | chr8.4:13420106-13420125 | MS.gene036626:CDS | 45.0% |
| ! | TCTACACTGAATTGGCCTGT+TGG | - | chr8.4:13420402-13420421 | None:intergenic | 45.0% |
| ! | TTTGGAATACTACCCAGGTC+AGG | + | chr8.4:13420275-13420294 | MS.gene036626:CDS | 45.0% |
| !! | AAAGTTGGTCTTATCCGCGT+CGG | - | chr8.4:13420145-13420164 | None:intergenic | 45.0% |
| !! | GGATTTTTCAAAGGAGCAGG+TGG | - | chr8.4:13420381-13420400 | None:intergenic | 45.0% |
| !! | TGGTGGTGGGAATTCAACTT+TGG | + | chr8.4:13419996-13420015 | MS.gene036626:CDS | 45.0% |
| !! | TTGTGGTGGATAACTGGAGT+TGG | - | chr8.4:13419762-13419781 | None:intergenic | 45.0% |
| AACTGGGCTCTTTCTCAAGC+AGG | + | chr8.4:13420753-13420772 | MS.gene036626:CDS | 50.0% | |
| ATCAAGCTACACAGGGGCTT+GGG | + | chr8.4:13420538-13420557 | MS.gene036626:CDS | 50.0% | |
| CTCTGATCAGATCACCCCTT+TGG | + | chr8.4:13420257-13420276 | MS.gene036626:CDS | 50.0% | |
| CTCTTTCTCAAGCAGGTAGG+TGG | + | chr8.4:13420760-13420779 | MS.gene036626:intron | 50.0% | |
| GACGCGGATAAGACCAACTT+TGG | + | chr8.4:13420144-13420163 | MS.gene036626:CDS | 50.0% | |
| GCCAGAACTGCTAGACTCTT+CGG | - | chr8.4:13420202-13420221 | None:intergenic | 50.0% | |
| GGTGCATGTGAGCAATTGCT+AGG | + | chr8.4:13421097-13421116 | MS.gene036626:intron | 50.0% | |
| GGTGCCTGTGAGAAATTGCT+AGG | - | chr8.4:13420946-13420965 | None:intergenic | 50.0% | |
| GTATCCCTTGGGAATAGGGT+CGG | - | chr8.4:13421180-13421199 | None:intergenic | 50.0% | |
| TGCCTGAACGGTTTCAGTGA+AGG | - | chr8.4:13419944-13419963 | None:intergenic | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | + | chr8.4:13420234-13420253 | MS.gene036626:CDS | 50.0% | |
| !! | ACCCCTTTGGAATACTACCC+AGG | + | chr8.4:13420270-13420289 | MS.gene036626:CDS | 50.0% |
| !! | ACGATTTTCGGCTACTGGCT+TGG | - | chr8.4:13420047-13420066 | None:intergenic | 50.0% |
| !! | CAGCGTTTGTGGTGGATAAC+TGG | - | chr8.4:13419768-13419787 | None:intergenic | 50.0% |
| GATCAAGCTACACAGGGGCT+TGG | + | chr8.4:13420537-13420556 | MS.gene036626:CDS | 55.0% | |
| GCCGAAGAGTCTAGCAGTTC+TGG | + | chr8.4:13420198-13420217 | MS.gene036626:CDS | 55.0% | |
| GGGCTCTTTCTCAAGCAGGT+AGG | + | chr8.4:13420757-13420776 | MS.gene036626:intron | 55.0% | |
| TCAAGCTACACAGGGGCTTG+GGG | + | chr8.4:13420539-13420558 | MS.gene036626:CDS | 55.0% | |
| TGCAGCTTCTCAAGCATGGG+AGG | + | chr8.4:13421331-13421350 | MS.gene036626:intron | 55.0% | |
| TGGGCTGACCCTATCCTCAT+GGG | + | chr8.4:13420900-13420919 | MS.gene036626:intron | 55.0% | |
| TTGGGCTGACCCTATCCTCA+TGG | + | chr8.4:13420899-13420918 | MS.gene036626:intron | 55.0% | |
| !!! | TACTGATGGCGGGGCGTTTT+AGG | - | chr8.4:13420967-13420986 | None:intergenic | 55.0% |
| GTCTTATCCGCGTCGGAGGA+TGG | - | chr8.4:13420138-13420157 | None:intergenic | 60.0% | |
| TACGGAGTGGAGAGCTGCTG+TGG | + | chr8.4:13420176-13420195 | MS.gene036626:CDS | 60.0% | |
| TCGGCCGACCCTATTCCCAA+GGG | + | chr8.4:13421173-13421192 | MS.gene036626:intron | 60.0% | |
| TTCGGCCGACCCTATTCCCA+AGG | + | chr8.4:13421172-13421191 | MS.gene036626:intron | 60.0% | |
| ! | GGAGTATCCATCCTCCGACG+CGG | + | chr8.4:13420128-13420147 | MS.gene036626:CDS | 60.0% |
| !! | GTTGGTCTTATCCGCGTCGG+AGG | - | chr8.4:13420142-13420161 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 13419703 | 13421358 | 13419703 | ID=MS.gene036626 |
| chr8.4 | mRNA | 13419703 | 13421358 | 13419703 | ID=MS.gene036626.t1;Parent=MS.gene036626 |
| chr8.4 | exon | 13419703 | 13420774 | 13419703 | ID=MS.gene036626.t1.exon1;Parent=MS.gene036626.t1 |
| chr8.4 | CDS | 13419703 | 13420774 | 13419703 | ID=cds.MS.gene036626.t1;Parent=MS.gene036626.t1 |
| chr8.4 | exon | 13421336 | 13421358 | 13421336 | ID=MS.gene036626.t1.exon2;Parent=MS.gene036626.t1 |
| chr8.4 | CDS | 13421336 | 13421358 | 13421336 | ID=cds.MS.gene036626.t1;Parent=MS.gene036626.t1 |
| Gene Sequence |
| Protein sequence |
