Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72022.t1 | XP_013462048.1 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 8.40E-203 | 716.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72022.t1 | O81862 | 50.9 | 371 | 169 | 6 | 4 | 365 | 2 | 368 | 3.2e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72022.t1 | I3STX0 | 96.2 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 6.1e-203 | 716.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055584 | MS.gene72022 | PPI |
| MS.gene014609 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene43244 | PPI |
| MS.gene40255 | MS.gene72022 | PPI |
| MS.gene44679 | MS.gene72022 | PPI |
| MS.gene40257 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene72023 | PPI |
| MS.gene44682 | MS.gene72022 | PPI |
| MS.gene014611 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene021954 | PPI |
| MS.gene72022 | MS.gene48549 | PPI |
| MS.gene53841 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene014610 | PPI |
| MS.gene40706 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene036626 | PPI |
| MS.gene036626 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene57747 | PPI |
| MS.gene72022 | MS.gene40705 | PPI |
| MS.gene72024 | MS.gene72022 | PPI |
| MS.gene40256 | MS.gene72022 | PPI |
| MS.gene58750 | MS.gene72022 | PPI |
| MS.gene021944 | MS.gene72022 | PPI |
| MS.gene72022 | MS.gene40707 | PPI |
| MS.gene72022 | MS.gene041428 | PPI |
| MS.gene72022 | MS.gene021944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72022.t1 | MTR_3g110320 | 96.154 | 364 | 14 | 0 | 1 | 364 | 1 | 364 | 0.0 | 721 |
| MS.gene72022.t1 | MTR_3g110320 | 96.089 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 0.0 | 708 |
| MS.gene72022.t1 | MTR_3g110280 | 84.680 | 359 | 54 | 1 | 1 | 358 | 1 | 359 | 0.0 | 615 |
| MS.gene72022.t1 | MTR_4g116920 | 75.209 | 359 | 73 | 3 | 1 | 358 | 1 | 344 | 0.0 | 536 |
| MS.gene72022.t1 | MTR_1g013150 | 34.551 | 356 | 216 | 5 | 22 | 364 | 32 | 383 | 1.19e-63 | 207 |
| MS.gene72022.t1 | MTR_4g117040 | 36.631 | 374 | 209 | 10 | 6 | 361 | 3 | 366 | 1.90e-63 | 216 |
| MS.gene72022.t1 | MTR_4g117020 | 34.595 | 370 | 220 | 8 | 3 | 359 | 2 | 362 | 7.78e-62 | 211 |
| MS.gene72022.t1 | MTR_4g117030 | 35.843 | 332 | 193 | 7 | 41 | 359 | 1 | 325 | 8.64e-59 | 202 |
| MS.gene72022.t1 | MTR_4g117000 | 33.237 | 346 | 215 | 7 | 30 | 363 | 35 | 376 | 8.73e-57 | 189 |
| MS.gene72022.t1 | MTR_4g116990 | 34.857 | 350 | 208 | 7 | 30 | 363 | 37 | 382 | 3.59e-55 | 186 |
| MS.gene72022.t1 | MTR_4g117800 | 33.908 | 174 | 113 | 1 | 7 | 180 | 5 | 176 | 5.83e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72022.t1 | AT4G19810 | 52.291 | 371 | 164 | 6 | 4 | 365 | 2 | 368 | 2.22e-122 | 358 |
| MS.gene72022.t1 | AT4G19810 | 52.291 | 371 | 164 | 6 | 4 | 365 | 2 | 368 | 2.22e-122 | 358 |
| MS.gene72022.t1 | AT4G19820 | 48.493 | 365 | 175 | 6 | 10 | 365 | 6 | 366 | 5.29e-107 | 318 |
| MS.gene72022.t1 | AT4G19800 | 45.349 | 344 | 176 | 5 | 25 | 360 | 2 | 341 | 5.01e-96 | 291 |
| MS.gene72022.t1 | AT4G19750 | 45.706 | 361 | 170 | 10 | 17 | 360 | 1 | 352 | 3.96e-94 | 285 |
| MS.gene72022.t1 | AT4G19760 | 45.013 | 371 | 174 | 10 | 17 | 363 | 1 | 365 | 2.04e-93 | 284 |
| MS.gene72022.t1 | AT4G19720 | 42.254 | 355 | 180 | 7 | 29 | 365 | 5 | 352 | 8.43e-86 | 264 |
| MS.gene72022.t1 | AT4G19730 | 40.588 | 340 | 169 | 8 | 17 | 331 | 1 | 332 | 8.20e-70 | 222 |
| MS.gene72022.t1 | AT4G19770 | 42.969 | 256 | 136 | 4 | 113 | 360 | 1 | 254 | 5.35e-60 | 194 |
| MS.gene72022.t1 | AT4G19740 | 35.897 | 195 | 103 | 6 | 136 | 316 | 24 | 210 | 3.79e-29 | 112 |
Find 97 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGAAAGTTGTTATTTC+TGG | 0.111144 | 3.4:+95583759 | None:intergenic |
| CTATAAATTCTACGGTTATT+AGG | 0.196560 | 3.4:+95583334 | None:intergenic |
| AGCAGGTGTGCTAGCCATTT+TGG | 0.198072 | 3.4:+95583819 | None:intergenic |
| CAGATGAAGGTATCAATAAA+TGG | 0.236425 | 3.4:-95583432 | MS.gene72022:CDS |
| TAGCATTTGTAGAGGAAAAT+TGG | 0.237789 | 3.4:+95584088 | None:intergenic |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 3.4:-95583151 | MS.gene72022:CDS |
| GTTATTTATGCCAAGCAAAA+TGG | 0.277191 | 3.4:-95583160 | MS.gene72022:CDS |
| ACTCAAAATTACTGCTTCAT+AGG | 0.281254 | 3.4:-95583229 | MS.gene72022:CDS |
| GCACTTGGCTTACCCTACTA+TGG | 0.305005 | 3.4:-95583379 | MS.gene72022:CDS |
| CAAGAGGAACGAATGCGTTT+TGG | 0.309061 | 3.4:+95584140 | None:intergenic |
| GAGAATCTTGCTGCGTTTGC+AGG | 0.311099 | 3.4:+95583937 | None:intergenic |
| TCTCCACTTGTAACCATAGT+AGG | 0.337636 | 3.4:+95583366 | None:intergenic |
| ACCACAGAGGCTAGGAGTTC+CGG | 0.350008 | 3.4:-95583652 | MS.gene72022:CDS |
| TACTCTTTGCCTGAACAGTT+TGG | 0.353606 | 3.4:+95583905 | None:intergenic |
| GTGAAAACCCTTCTATCAAT+TGG | 0.372121 | 3.4:-95583877 | MS.gene72022:CDS |
| ATATTGAACAAGACAGCAAC+TGG | 0.377045 | 3.4:-95583114 | MS.gene72022:CDS |
| CACCACCACCAATTGATAGA+AGG | 0.385809 | 3.4:+95583869 | None:intergenic |
| ACTCTTTGCCTGAACAGTTT+GGG | 0.393044 | 3.4:+95583906 | None:intergenic |
| TAACAACAGTGCCGGCTTGC+CGG | 0.396736 | 3.4:+95583633 | None:intergenic |
| TTCATGGCCTTGATCTTGAC+TGG | 0.404722 | 3.4:-95583744 | MS.gene72022:CDS |
| GCCAGAAATAACAACTTTCA+TGG | 0.408115 | 3.4:-95583760 | MS.gene72022:CDS |
| CTATCATCAAAGGTGGCTAT+TGG | 0.409298 | 3.4:-95584068 | MS.gene72022:CDS |
| AGTAAAGCTACGCAGGGACT+AGG | 0.428936 | 3.4:-95583313 | MS.gene72022:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 3.4:-95583551 | MS.gene72022:CDS |
| GTAAAGCTACGCAGGGACTA+GGG | 0.431578 | 3.4:-95583312 | MS.gene72022:CDS |
| TGGTGGTGGTGGCCCTACTC+TGG | 0.434515 | 3.4:-95583854 | MS.gene72022:CDS |
| ATCAATAAATGGGTAGGGTT+AGG | 0.436423 | 3.4:-95583421 | MS.gene72022:CDS |
| GACGCAGAAAAGGCCAACTT+TGG | 0.449817 | 3.4:-95583706 | MS.gene72022:CDS |
| AACCTTCACCCAAACTGTTC+AGG | 0.452083 | 3.4:-95583914 | MS.gene72022:CDS |
| AAACAAGTGGGTGAAGTAAG+AGG | 0.455014 | 3.4:+95584008 | None:intergenic |
| CTGCACTGAACAAGCCAGTT+GGG | 0.459093 | 3.4:+95583452 | None:intergenic |
| CTCAAAATTACTGCTTCATA+GGG | 0.461311 | 3.4:-95583228 | MS.gene72022:CDS |
| AACTGGGCTCTTTCTGAAGC+AGG | 0.469880 | 3.4:-95583097 | MS.gene72022:intron |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 3.4:-95583552 | MS.gene72022:CDS |
| CTATCAATTGGTGGTGGTGG+TGG | 0.474251 | 3.4:-95583865 | MS.gene72022:CDS |
| ACTGCTTCATAGGGACAGAT+TGG | 0.474272 | 3.4:-95583219 | MS.gene72022:CDS |
| TCTGATTAGTGAACCAAAGT+TGG | 0.474919 | 3.4:+95583693 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 3.4:-95583557 | MS.gene72022:CDS |
| TCCATCCTCTGACGCAGAAA+AGG | 0.482858 | 3.4:-95583716 | MS.gene72022:CDS |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 3.4:+95583487 | None:intergenic |
| GATAACTATCTGAAATGAAA+AGG | 0.483356 | 3.4:+95583509 | None:intergenic |
| TTGGTTCACTAATCAGAGAA+TGG | 0.486996 | 3.4:-95583687 | MS.gene72022:CDS |
| GGCTATTGGTATTCTGATAG+TGG | 0.488891 | 3.4:-95584054 | MS.gene72022:CDS |
| TAGCTTTACTATAAATTCTA+CGG | 0.491563 | 3.4:+95583326 | None:intergenic |
| CTATGGTTACAAGTGGAGAT+TGG | 0.494965 | 3.4:-95583362 | MS.gene72022:CDS |
| TGCTGCGTTTGCAGGAGAAA+TGG | 0.503017 | 3.4:+95583945 | None:intergenic |
| TCATGGCCTTGATCTTGACT+GGG | 0.503034 | 3.4:-95583743 | MS.gene72022:CDS |
| AGATGAAGGTATCAATAAAT+GGG | 0.508361 | 3.4:-95583431 | MS.gene72022:CDS |
| GGCTAGGAGTTCCGGCAAGC+CGG | 0.510084 | 3.4:-95583644 | MS.gene72022:CDS |
| GAAGGTATCAATAAATGGGT+AGG | 0.514625 | 3.4:-95583427 | MS.gene72022:CDS |
| CTTCTATCAATTGGTGGTGG+TGG | 0.515237 | 3.4:-95583868 | MS.gene72022:CDS |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 3.4:+95584113 | None:intergenic |
| AGTTGTTATTTCTGGCTACT+CGG | 0.517027 | 3.4:+95583767 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.522597 | 3.4:+95584094 | None:intergenic |
| AAAATGGCTAGCACACCTGC+TGG | 0.526569 | 3.4:-95583817 | MS.gene72022:CDS |
| TGCCTGAACAGTTTGGGTGA+AGG | 0.526889 | 3.4:+95583912 | None:intergenic |
| TTGCAGCTTCTCGAAACTGG+GGG | 0.527885 | 3.4:-95582060 | MS.gene72022:intron |
| CACTCAAAGTATAGCTAACA+AGG | 0.528080 | 3.4:-95583182 | MS.gene72022:CDS |
| TCTACAAATGCTATCATCAA+AGG | 0.542648 | 3.4:-95584078 | MS.gene72022:CDS |
| CTTGGTTGGTAGCAGTATCA+AGG | 0.547278 | 3.4:+95583971 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 3.4:+95583562 | None:intergenic |
| TTGTTATCTGCTGCAGTAGG+TGG | 0.549211 | 3.4:-95583616 | MS.gene72022:CDS |
| CTGCCGTGACCACAGAGGCT+AGG | 0.554571 | 3.4:-95583660 | MS.gene72022:CDS |
| ACCACCACCAATTGATAGAA+GGG | 0.556168 | 3.4:+95583870 | None:intergenic |
| CTGTTGTTATCTGCTGCAGT+AGG | 0.558516 | 3.4:-95583619 | MS.gene72022:CDS |
| AATTTATAGTAAAGCTACGC+AGG | 0.562146 | 3.4:-95583320 | MS.gene72022:CDS |
| GATACTCCCAGTCAAGATCA+AGG | 0.567638 | 3.4:+95583737 | None:intergenic |
| CTCCACTTGTAACCATAGTA+GGG | 0.567864 | 3.4:+95583367 | None:intergenic |
| TCTGCACTGAACAAGCCAGT+TGG | 0.568233 | 3.4:+95583451 | None:intergenic |
| AAGGTATCAATAAATGGGTA+GGG | 0.575326 | 3.4:-95583426 | MS.gene72022:CDS |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 3.4:+95583995 | None:intergenic |
| AACAAGTGGGTGAAGTAAGA+GGG | 0.579563 | 3.4:+95584009 | None:intergenic |
| GGCTTGTTCAGTGCAGATGA+AGG | 0.580026 | 3.4:-95583445 | MS.gene72022:CDS |
| TTTGATGATAGCATTTGTAG+AGG | 0.581947 | 3.4:+95584080 | None:intergenic |
| ACTCCTAGCCTCTGTGGTCA+CGG | 0.583379 | 3.4:+95583657 | None:intergenic |
| TTGCAGGAGAAATGGTGACT+TGG | 0.587435 | 3.4:+95583953 | None:intergenic |
| TTTGCAGCTTCTCGAAACTG+GGG | 0.587515 | 3.4:-95582061 | MS.gene72022:intron |
| GCAGCAGATAACAACAGTGC+CGG | 0.602120 | 3.4:+95583625 | None:intergenic |
| AAAACCCTTCTATCAATTGG+TGG | 0.603268 | 3.4:-95583874 | MS.gene72022:CDS |
| ACCCTTCTATCAATTGGTGG+TGG | 0.603753 | 3.4:-95583871 | MS.gene72022:CDS |
| TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 3.4:+95584124 | None:intergenic |
| TTCATAGGGACAGATTGGTA+TGG | 0.606399 | 3.4:-95583214 | MS.gene72022:CDS |
| TACCCTACTATGGTTACAAG+TGG | 0.610838 | 3.4:-95583369 | MS.gene72022:CDS |
| ATTTATAGTAAAGCTACGCA+GGG | 0.611007 | 3.4:-95583319 | MS.gene72022:CDS |
| GATTAATATCAGAAGCTGCA+AGG | 0.615788 | 3.4:+95584031 | None:intergenic |
| AGGAGAAATGGTGACTTGGT+TGG | 0.620808 | 3.4:+95583957 | None:intergenic |
| TGCAGCTTCTCGAAACTGGG+GGG | 0.625304 | 3.4:-95582059 | MS.gene72022:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 3.4:-95583311 | MS.gene72022:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 3.4:-95583296 | MS.gene72022:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 3.4:+95584106 | None:intergenic |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 3.4:+95583996 | None:intergenic |
| GCCGGAACTCCTAGCCTCTG+TGG | 0.649064 | 3.4:+95583651 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 3.4:+95583563 | None:intergenic |
| ACAAATGCTATCATCAAAGG+TGG | 0.658438 | 3.4:-95584075 | MS.gene72022:CDS |
| TATTGAACAAGACAGCAACT+GGG | 0.675280 | 3.4:-95583113 | MS.gene72022:CDS |
| ACTCCACTAAAATACTACCC+AGG | 0.700599 | 3.4:-95583580 | MS.gene72022:CDS |
| GAGAGCTGCCGTGACCACAG+AGG | 0.748821 | 3.4:-95583665 | MS.gene72022:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTTTGTTTTAAAAT+GGG | - | chr3.4:95584024-95584043 | MS.gene72022:CDS | 10.0% |
| !!! | TTTTATTGTTTGTTTTAAAA+TGG | - | chr3.4:95584023-95584042 | MS.gene72022:CDS | 10.0% |
| !! | TATATTGTAAAAACAAAACT+AGG | - | chr3.4:95583950-95583969 | MS.gene72022:CDS | 15.0% |
| !!! | ATTGATTAATTTGTTTTTTG+AGG | + | chr3.4:95583894-95583913 | None:intergenic | 15.0% |
| !!! | TTGATTAATTTGTTTTTTGA+GGG | + | chr3.4:95583893-95583912 | None:intergenic | 15.0% |
| !! | AAAACAAACAATAAAATCAG+TGG | + | chr3.4:95584019-95584038 | None:intergenic | 20.0% |
| !! | GAGTGAAATTTATAACTATA+AGG | + | chr3.4:95583807-95583826 | None:intergenic | 20.0% |
| !! | GGAACTAAAAAAAACTAATA+AGG | + | chr3.4:95583786-95583805 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr3.4:95582924-95582943 | MS.gene72022:intron | 20.0% |
| !!! | AAGAATCTATGAATGATTTT+CGG | + | chr3.4:95582413-95582432 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTATAAATTCTA+CGG | + | chr3.4:95582881-95582900 | None:intergenic | 20.0% |
| !!! | TGATTAATTTGTTTTTTGAG+GGG | + | chr3.4:95583892-95583911 | None:intergenic | 20.0% |
| !!! | TTTTCATAAAGATATTAGCA+GGG | + | chr3.4:95583367-95583386 | None:intergenic | 20.0% |
| !!! | TTTTTACTCAAGTAATAAGT+GGG | + | chr3.4:95583992-95584011 | None:intergenic | 20.0% |
| !!! | TTTTTTACTCAAGTAATAAG+TGG | + | chr3.4:95583993-95584012 | None:intergenic | 20.0% |
| ! | AAGGATATAAAAAATACTGG+AGG | - | chr3.4:95582927-95582946 | MS.gene72022:intron | 25.0% |
| ! | AGGATATAAAAAATACTGGA+GGG | - | chr3.4:95582928-95582947 | MS.gene72022:intron | 25.0% |
| ! | CAATGAAACTGTGTTTAATT+AGG | + | chr3.4:95583154-95583173 | None:intergenic | 25.0% |
| ! | CTATAAATTCTACGGTTATT+AGG | + | chr3.4:95582873-95582892 | None:intergenic | 25.0% |
| ! | TAATTCGTGCATATATAACT+AGG | - | chr3.4:95583222-95583241 | MS.gene72022:CDS | 25.0% |
| ! | TACTTATTCAACTAAGCAAA+AGG | + | chr3.4:95583584-95583603 | None:intergenic | 25.0% |
| !! | CTTTTCATAAAGATATTAGC+AGG | + | chr3.4:95583368-95583387 | None:intergenic | 25.0% |
| !! | GATAACTATCTGAAATGAAA+AGG | + | chr3.4:95582698-95582717 | None:intergenic | 25.0% |
| !!! | AGATGAAGGTATCAATAAAT+GGG | - | chr3.4:95582773-95582792 | MS.gene72022:intron | 25.0% |
| AAAAAAAGAGTCACATGGTT+TGG | - | chr3.4:95584068-95584087 | MS.gene72022:CDS | 30.0% | |
| AAGTAATAAGTGGGATGTTT+AGG | + | chr3.4:95583983-95584002 | None:intergenic | 30.0% | |
| AATTTATAGTAAAGCTACGC+AGG | - | chr3.4:95582884-95582903 | MS.gene72022:intron | 30.0% | |
| ACTCAAAATTACTGCTTCAT+AGG | - | chr3.4:95582975-95582994 | MS.gene72022:intron | 30.0% | |
| ATGCACCAGAATTATTTACT+TGG | - | chr3.4:95583395-95583414 | MS.gene72022:CDS | 30.0% | |
| ATTTATAGTAAAGCTACGCA+GGG | - | chr3.4:95582885-95582904 | MS.gene72022:intron | 30.0% | |
| CCAAAAAATAAACTTGCACT+TGG | - | chr3.4:95582810-95582829 | MS.gene72022:intron | 30.0% | |
| CTAGGAGTAATTAGTTAAAG+AGG | - | chr3.4:95583240-95583259 | MS.gene72022:CDS | 30.0% | |
| CTCAAAATTACTGCTTCATA+GGG | - | chr3.4:95582976-95582995 | MS.gene72022:intron | 30.0% | |
| GCTTAAATAAGACTCATTCT+TGG | - | chr3.4:95583546-95583565 | MS.gene72022:CDS | 30.0% | |
| GTTATTTATGCCAAGCAAAA+TGG | - | chr3.4:95583044-95583063 | MS.gene72022:intron | 30.0% | |
| TAGCATTTGTAGAGGAAAAT+TGG | + | chr3.4:95582119-95582138 | None:intergenic | 30.0% | |
| TCTACAAATGCTATCATCAA+AGG | - | chr3.4:95582126-95582145 | MS.gene72022:intron | 30.0% | |
| TGTGACCAAGTAAATAATTC+TGG | + | chr3.4:95583403-95583422 | None:intergenic | 30.0% | |
| ! | AAACAACACAACACTTTTGT+CGG | + | chr3.4:95583615-95583634 | None:intergenic | 30.0% |
| ! | AAGGTATCAATAAATGGGTA+GGG | - | chr3.4:95582778-95582797 | MS.gene72022:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr3.4:95583066-95583085 | MS.gene72022:intron | 30.0% |
| ! | TTTGATGATAGCATTTGTAG+AGG | + | chr3.4:95582127-95582146 | None:intergenic | 30.0% |
| !! | CAGATGAAGGTATCAATAAA+TGG | - | chr3.4:95582772-95582791 | MS.gene72022:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr3.4:95582970-95582989 | None:intergenic | 30.0% |
| !!! | AAACCATGTGACTCTTTTTT+TGG | + | chr3.4:95584069-95584088 | None:intergenic | 30.0% |
| !!! | AACCATGTGACTCTTTTTTT+GGG | + | chr3.4:95584068-95584087 | None:intergenic | 30.0% |
| !!! | CCAAGTGCAAGTTTATTTTT+TGG | + | chr3.4:95582813-95582832 | None:intergenic | 30.0% |
| !!! | TTGTTTTAAAATGGGTCACA+CGG | - | chr3.4:95584032-95584051 | MS.gene72022:CDS | 30.0% |
| AAAACCCTTCTATCAATTGG+TGG | - | chr3.4:95582330-95582349 | MS.gene72022:intron | 35.0% | |
| AAAATTGACGCCAAAATGAC+TGG | + | chr3.4:95583725-95583744 | None:intergenic | 35.0% | |
| ACAAATGCTATCATCAAAGG+TGG | - | chr3.4:95582129-95582148 | MS.gene72022:intron | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr3.4:95582211-95582230 | None:intergenic | 35.0% | |
| ATATTGAACAAGACAGCAAC+TGG | - | chr3.4:95583090-95583109 | MS.gene72022:intron | 35.0% | |
| ATCAATAAATGGGTAGGGTT+AGG | - | chr3.4:95582783-95582802 | MS.gene72022:intron | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr3.4:95582652-95582671 | MS.gene72022:intron | 35.0% | |
| CACTCAAAGTATAGCTAACA+AGG | - | chr3.4:95583022-95583041 | MS.gene72022:intron | 35.0% | |
| CTTAACCGACACTATATCTA+GGG | - | chr3.4:95583675-95583694 | MS.gene72022:CDS | 35.0% | |
| GATTAATATCAGAAGCTGCA+AGG | + | chr3.4:95582176-95582195 | None:intergenic | 35.0% | |
| GCCAGAAATAACAACTTTCA+TGG | - | chr3.4:95582444-95582463 | MS.gene72022:intron | 35.0% | |
| GGCACAAAAATATGCCAAAA+TGG | - | chr3.4:95582371-95582390 | MS.gene72022:intron | 35.0% | |
| GTGAAAACCCTTCTATCAAT+TGG | - | chr3.4:95582327-95582346 | MS.gene72022:intron | 35.0% | |
| TAGAGTGACTCATTGTTAGT+CGG | + | chr3.4:95584102-95584121 | None:intergenic | 35.0% | |
| TATTGAACAAGACAGCAACT+GGG | - | chr3.4:95583091-95583110 | MS.gene72022:intron | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr3.4:95582647-95582666 | MS.gene72022:intron | 35.0% | |
| TCTGATTAGTGAACCAAAGT+TGG | + | chr3.4:95582514-95582533 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr3.4:95582653-95582672 | MS.gene72022:intron | 35.0% | |
| TTGGTTCACTAATCAGAGAA+TGG | - | chr3.4:95582517-95582536 | MS.gene72022:intron | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr3.4:95582113-95582132 | None:intergenic | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr3.4:95583057-95583076 | None:intergenic | 35.0% |
| ! | TGCAAGTAAACCAGTCATTT+TGG | - | chr3.4:95583712-95583731 | MS.gene72022:CDS | 35.0% |
| !! | AAGAGGCTTGCTAATCTTTA+AGG | - | chr3.4:95583257-95583276 | MS.gene72022:CDS | 35.0% |
| !! | AGTTGTTATTTCTGGCTACT+CGG | + | chr3.4:95582440-95582459 | None:intergenic | 35.0% |
| !! | CATATTTTTGTGCCAGAGTA+GGG | + | chr3.4:95582365-95582384 | None:intergenic | 35.0% |
| !! | CTAGATATAGTGTCGGTTAA+GGG | + | chr3.4:95583676-95583695 | None:intergenic | 35.0% |
| !! | GAAGGTATCAATAAATGGGT+AGG | - | chr3.4:95582777-95582796 | MS.gene72022:intron | 35.0% |
| !! | GCCATGAAAGTTGTTATTTC+TGG | + | chr3.4:95582448-95582467 | None:intergenic | 35.0% |
| !! | TAGATATAGTGTCGGTTAAG+GGG | + | chr3.4:95583675-95583694 | None:intergenic | 35.0% |
| AAACAAGTGGGTGAAGTAAG+AGG | + | chr3.4:95582199-95582218 | None:intergenic | 40.0% | |
| AACAAGTGGGTGAAGTAAGA+GGG | + | chr3.4:95582198-95582217 | None:intergenic | 40.0% | |
| ACCACCACCAATTGATAGAA+GGG | + | chr3.4:95582337-95582356 | None:intergenic | 40.0% | |
| ACTCCACTAAAATACTACCC+AGG | - | chr3.4:95582624-95582643 | MS.gene72022:intron | 40.0% | |
| ACTCTTTGCCTGAACAGTTT+GGG | + | chr3.4:95582301-95582320 | None:intergenic | 40.0% | |
| AGAGTGACTCATTGTTAGTC+GGG | + | chr3.4:95584101-95584120 | None:intergenic | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr3.4:95582101-95582120 | None:intergenic | 40.0% | |
| CACCCAAAAAAAGAGTCACA+TGG | - | chr3.4:95584063-95584082 | MS.gene72022:CDS | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr3.4:95582212-95582231 | None:intergenic | 40.0% | |
| CCTTAACCGACACTATATCT+AGG | - | chr3.4:95583674-95583693 | MS.gene72022:CDS | 40.0% | |
| CTATCATCAAAGGTGGCTAT+TGG | - | chr3.4:95582136-95582155 | MS.gene72022:intron | 40.0% | |
| CTATGGTTACAAGTGGAGAT+TGG | - | chr3.4:95582842-95582861 | MS.gene72022:intron | 40.0% | |
| CTCCACTTGTAACCATAGTA+GGG | + | chr3.4:95582840-95582859 | None:intergenic | 40.0% | |
| GGCTATTGGTATTCTGATAG+TGG | - | chr3.4:95582150-95582169 | MS.gene72022:intron | 40.0% | |
| TACCCTACTATGGTTACAAG+TGG | - | chr3.4:95582835-95582854 | MS.gene72022:intron | 40.0% | |
| TACTCTTTGCCTGAACAGTT+TGG | + | chr3.4:95582302-95582321 | None:intergenic | 40.0% | |
| TCTCCACTTGTAACCATAGT+AGG | + | chr3.4:95582841-95582860 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr3.4:95582644-95582663 | None:intergenic | 40.0% | |
| TTCATAGGGACAGATTGGTA+TGG | - | chr3.4:95582990-95583009 | MS.gene72022:intron | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr3.4:95582645-95582664 | None:intergenic | 40.0% | |
| ! | TTTTGCAGCTTCTCGAAACT+GGG | - | chr3.4:95584142-95584161 | MS.gene72022:CDS | 40.0% |
| ! | TTTTTGCAGCTTCTCGAAAC+TGG | - | chr3.4:95584141-95584160 | MS.gene72022:CDS | 40.0% |
| !! | AAGCCAGTTGGGTTTTTCAA+AGG | + | chr3.4:95582744-95582763 | None:intergenic | 40.0% |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr3.4:95582739-95582758 | None:intergenic | 40.0% |
| !! | CCTAGATATAGTGTCGGTTA+AGG | + | chr3.4:95583677-95583696 | None:intergenic | 40.0% |
| !! | GCATATTTTTGTGCCAGAGT+AGG | + | chr3.4:95582366-95582385 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr3.4:95583053-95583072 | MS.gene72022:intron | 40.0% |
| !! | TGACCTGGGTAGTATTTTAG+TGG | + | chr3.4:95582630-95582649 | None:intergenic | 40.0% |
| !!! | CATGTGACTCTTTTTTTGGG+TGG | + | chr3.4:95584065-95584084 | None:intergenic | 40.0% |
| AACCTTCACCCAAACTGTTC+AGG | - | chr3.4:95582290-95582309 | MS.gene72022:intron | 45.0% | |
| ACCCTTCTATCAATTGGTGG+TGG | - | chr3.4:95582333-95582352 | MS.gene72022:intron | 45.0% | |
| ACTGCTTCATAGGGACAGAT+TGG | - | chr3.4:95582985-95583004 | MS.gene72022:intron | 45.0% | |
| CACCACCACCAATTGATAGA+AGG | + | chr3.4:95582338-95582357 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+AGG | - | chr3.4:95582585-95582604 | MS.gene72022:intron | 45.0% | |
| GAGTGACTCATTGTTAGTCG+GGG | + | chr3.4:95584100-95584119 | None:intergenic | 45.0% | |
| GATACTCCCAGTCAAGATCA+AGG | + | chr3.4:95582470-95582489 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATCAAG+AGG | + | chr3.4:95582083-95582102 | None:intergenic | 45.0% | |
| TTGCAGGAGAAATGGTGACT+TGG | + | chr3.4:95582254-95582273 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr3.4:95582094-95582113 | None:intergenic | 45.0% | |
| TTGTTATCTGCTGCAGTAGG+TGG | - | chr3.4:95582588-95582607 | MS.gene72022:intron | 45.0% | |
| TTTGCAGCTTCTCGAAACTG+GGG | - | chr3.4:95584143-95584162 | MS.gene72022:CDS | 45.0% | |
| ! | ATGAATGATTTTCGGCCAGC+AGG | + | chr3.4:95582405-95582424 | None:intergenic | 45.0% |
| ! | CAACACAACACTTTTGTCGG+TGG | + | chr3.4:95583612-95583631 | None:intergenic | 45.0% |
| ! | CAAGAGGAACGAATGCGTTT+TGG | + | chr3.4:95582067-95582086 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr3.4:95582738-95582757 | MS.gene72022:intron | 45.0% |
| ! | TCATGGCCTTGATCTTGACT+GGG | - | chr3.4:95582461-95582480 | MS.gene72022:intron | 45.0% |
| ! | TTCATGGCCTTGATCTTGAC+TGG | - | chr3.4:95582460-95582479 | MS.gene72022:intron | 45.0% |
| !! | AGGAGAAATGGTGACTTGGT+TGG | + | chr3.4:95582250-95582269 | None:intergenic | 45.0% |
| !! | CTTCTATCAATTGGTGGTGG+TGG | - | chr3.4:95582336-95582355 | MS.gene72022:intron | 45.0% |
| !! | CTTGGTTGGTAGCAGTATCA+AGG | + | chr3.4:95582236-95582255 | None:intergenic | 45.0% |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr3.4:95582738-95582757 | None:intergenic | 45.0% |
| AAAATGGCTAGCACACCTGC+TGG | - | chr3.4:95582387-95582406 | MS.gene72022:intron | 50.0% | |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr3.4:95582908-95582927 | MS.gene72022:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr3.4:95582891-95582910 | MS.gene72022:intron | 50.0% | |
| CTGCACTGAACAAGCCAGTT+GGG | + | chr3.4:95582755-95582774 | None:intergenic | 50.0% | |
| GACGCAGAAAAGGCCAACTT+TGG | - | chr3.4:95582498-95582517 | MS.gene72022:intron | 50.0% | |
| GACTCATTGTTAGTCGGGGA+TGG | + | chr3.4:95584096-95584115 | None:intergenic | 50.0% | |
| GAGAATCTTGCTGCGTTTGC+AGG | + | chr3.4:95582270-95582289 | None:intergenic | 50.0% | |
| GAGATGAGAGATGAGTTGCC+TGG | - | chr3.4:95583646-95583665 | MS.gene72022:CDS | 50.0% | |
| GCACTTGGCTTACCCTACTA+TGG | - | chr3.4:95582825-95582844 | MS.gene72022:intron | 50.0% | |
| GCAGCAGATAACAACAGTGC+CGG | + | chr3.4:95582582-95582601 | None:intergenic | 50.0% | |
| GCCAGCCCTAGATATAGTGT+CGG | + | chr3.4:95583683-95583702 | None:intergenic | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr3.4:95582892-95582911 | MS.gene72022:intron | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr3.4:95582893-95582912 | MS.gene72022:intron | 50.0% | |
| TCCATCCTCTGACGCAGAAA+AGG | - | chr3.4:95582488-95582507 | MS.gene72022:intron | 50.0% | |
| TCTGCACTGAACAAGCCAGT+TGG | + | chr3.4:95582756-95582775 | None:intergenic | 50.0% | |
| TGCCTGAACAGTTTGGGTGA+AGG | + | chr3.4:95582295-95582314 | None:intergenic | 50.0% | |
| TGCTGCGTTTGCAGGAGAAA+TGG | + | chr3.4:95582262-95582281 | None:intergenic | 50.0% | |
| TTGCAGCTTCTCGAAACTGG+GGG | - | chr3.4:95584144-95584163 | MS.gene72022:CDS | 50.0% | |
| ! | ACCGACACTATATCTAGGGC+TGG | - | chr3.4:95583679-95583698 | MS.gene72022:CDS | 50.0% |
| ! | AGCAGGTGTGCTAGCCATTT+TGG | + | chr3.4:95582388-95582407 | None:intergenic | 50.0% |
| ! | ATATCTAGGGCTGGCACATG+AGG | - | chr3.4:95583688-95583707 | MS.gene72022:CDS | 50.0% |
| ! | GGCTTGTTCAGTGCAGATGA+AGG | - | chr3.4:95582759-95582778 | MS.gene72022:intron | 50.0% |
| ! | TCTGAAGCAGGTCGGTACAT+AGG | - | chr3.4:95583119-95583138 | MS.gene72022:CDS | 50.0% |
| !! | AACTGGGCTCTTTCTGAAGC+AGG | - | chr3.4:95583107-95583126 | MS.gene72022:CDS | 50.0% |
| !! | CTATCAATTGGTGGTGGTGG+TGG | - | chr3.4:95582339-95582358 | MS.gene72022:intron | 50.0% |
| ACCACAGAGGCTAGGAGTTC+CGG | - | chr3.4:95582552-95582571 | MS.gene72022:intron | 55.0% | |
| ACTCCTAGCCTCTGTGGTCA+CGG | + | chr3.4:95582550-95582569 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr3.4:95582720-95582739 | None:intergenic | 55.0% | |
| TGCAGCTTCTCGAAACTGGG+GGG | - | chr3.4:95584145-95584164 | MS.gene72022:CDS | 55.0% | |
| ! | GCCTTTTCTGCGTCAGAGGA+TGG | + | chr3.4:95582492-95582511 | None:intergenic | 55.0% |
| !! | GGGCTCTTTCTGAAGCAGGT+CGG | - | chr3.4:95583111-95583130 | MS.gene72022:CDS | 55.0% |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr3.4:95582735-95582754 | None:intergenic | 55.0% |
| !! | TAACAACAGTGCCGGCTTGC+CGG | + | chr3.4:95582574-95582593 | None:intergenic | 55.0% |
| !!! | GTTGGCCTTTTCTGCGTCAG+AGG | + | chr3.4:95582496-95582515 | None:intergenic | 55.0% |
| CTGCCGTGACCACAGAGGCT+AGG | - | chr3.4:95582544-95582563 | MS.gene72022:intron | 65.0% | |
| GAGAGCTGCCGTGACCACAG+AGG | - | chr3.4:95582539-95582558 | MS.gene72022:intron | 65.0% | |
| GCCGGAACTCCTAGCCTCTG+TGG | + | chr3.4:95582556-95582575 | None:intergenic | 65.0% | |
| GGCTAGGAGTTCCGGCAAGC+CGG | - | chr3.4:95582560-95582579 | MS.gene72022:intron | 65.0% | |
| !! | GTGTCGGTTAAGGGGCAGCC+AGG | + | chr3.4:95583667-95583686 | None:intergenic | 65.0% |
| !! | TGGTGGTGGTGGCCCTACTC+TGG | - | chr3.4:95582350-95582369 | MS.gene72022:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95582054 | 95584172 | 95582054 | ID=MS.gene72022 |
| chr3.4 | mRNA | 95582054 | 95584172 | 95582054 | ID=MS.gene72022.t1;Parent=MS.gene72022 |
| chr3.4 | exon | 95583098 | 95584172 | 95583098 | ID=MS.gene72022.t1.exon1;Parent=MS.gene72022.t1 |
| chr3.4 | CDS | 95583098 | 95584172 | 95583098 | ID=cds.MS.gene72022.t1;Parent=MS.gene72022.t1 |
| chr3.4 | exon | 95582054 | 95582076 | 95582054 | ID=MS.gene72022.t1.exon2;Parent=MS.gene72022.t1 |
| chr3.4 | CDS | 95582054 | 95582076 | 95582054 | ID=cds.MS.gene72022.t1;Parent=MS.gene72022.t1 |
| Gene Sequence |
| Protein sequence |
