Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021944.t1 | XP_013462046.2 | 88.9 | 380 | 37 | 2 | 1 | 378 | 26 | 402 | 2.10E-188 | 668.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021944.t1 | O81862 | 49.3 | 363 | 169 | 6 | 12 | 365 | 10 | 366 | 5.6e-89 | 329.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021944.t1 | A0A396J6K9 | 88.9 | 380 | 37 | 2 | 1 | 378 | 26 | 402 | 1.5e-188 | 668.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021944 | MS.gene57747 | PPI |
| MS.gene40706 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene014610 | PPI |
| MS.gene021944 | MS.gene036626 | PPI |
| MS.gene021944 | MS.gene40705 | PPI |
| MS.gene036626 | MS.gene021944 | PPI |
| MS.gene72024 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene72023 | PPI |
| MS.gene021944 | MS.gene40707 | PPI |
| MS.gene021944 | MS.gene041428 | PPI |
| MS.gene40256 | MS.gene021944 | PPI |
| MS.gene58750 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene43244 | PPI |
| MS.gene44679 | MS.gene021944 | PPI |
| MS.gene40257 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene021954 | PPI |
| MS.gene44682 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene72022 | PPI |
| MS.gene055584 | MS.gene021944 | PPI |
| MS.gene014609 | MS.gene021944 | PPI |
| MS.gene014611 | MS.gene021944 | PPI |
| MS.gene40255 | MS.gene021944 | PPI |
| MS.gene021944 | MS.gene48549 | PPI |
| MS.gene53841 | MS.gene021944 | PPI |
| MS.gene72022 | MS.gene021944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021944.t1 | MTR_3g110280 | 90.000 | 360 | 35 | 1 | 1 | 360 | 1 | 359 | 0.0 | 650 |
| MS.gene021944.t1 | MTR_3g110320 | 82.787 | 366 | 61 | 1 | 1 | 366 | 1 | 364 | 0.0 | 620 |
| MS.gene021944.t1 | MTR_3g110320 | 82.825 | 361 | 60 | 1 | 1 | 361 | 1 | 359 | 0.0 | 612 |
| MS.gene021944.t1 | MTR_4g116920 | 75.414 | 362 | 71 | 3 | 1 | 361 | 1 | 345 | 0.0 | 537 |
| MS.gene021944.t1 | MTR_1g013150 | 34.637 | 358 | 215 | 5 | 22 | 366 | 32 | 383 | 2.12e-66 | 215 |
| MS.gene021944.t1 | MTR_4g117040 | 35.925 | 373 | 214 | 9 | 7 | 364 | 5 | 367 | 2.04e-64 | 219 |
| MS.gene021944.t1 | MTR_4g117000 | 35.057 | 348 | 208 | 7 | 30 | 365 | 35 | 376 | 4.99e-62 | 204 |
| MS.gene021944.t1 | MTR_4g117020 | 33.602 | 372 | 224 | 8 | 6 | 364 | 4 | 365 | 3.56e-60 | 207 |
| MS.gene021944.t1 | MTR_4g117030 | 33.803 | 355 | 213 | 7 | 41 | 382 | 1 | 346 | 3.29e-58 | 201 |
| MS.gene021944.t1 | MTR_4g116990 | 35.795 | 352 | 204 | 7 | 30 | 365 | 37 | 382 | 5.26e-57 | 191 |
| MS.gene021944.t1 | MTR_4g117800 | 33.333 | 177 | 114 | 1 | 6 | 182 | 4 | 176 | 5.28e-23 | 100 |
| MS.gene021944.t1 | MTR_7g096730 | 40.476 | 84 | 42 | 3 | 289 | 364 | 3 | 86 | 2.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021944.t1 | AT4G19810 | 50.549 | 364 | 165 | 6 | 11 | 365 | 9 | 366 | 1.03e-117 | 347 |
| MS.gene021944.t1 | AT4G19810 | 50.549 | 364 | 165 | 6 | 11 | 365 | 9 | 366 | 1.03e-117 | 347 |
| MS.gene021944.t1 | AT4G19820 | 47.922 | 361 | 173 | 6 | 14 | 365 | 10 | 364 | 1.01e-104 | 313 |
| MS.gene021944.t1 | AT4G19800 | 41.892 | 370 | 192 | 6 | 25 | 377 | 2 | 365 | 1.73e-95 | 291 |
| MS.gene021944.t1 | AT4G19760 | 44.504 | 373 | 175 | 10 | 17 | 365 | 1 | 365 | 7.14e-93 | 283 |
| MS.gene021944.t1 | AT4G19750 | 44.353 | 363 | 174 | 10 | 17 | 362 | 1 | 352 | 3.78e-92 | 281 |
| MS.gene021944.t1 | AT4G19720 | 42.340 | 359 | 182 | 6 | 30 | 371 | 6 | 356 | 2.20e-87 | 269 |
| MS.gene021944.t1 | AT4G19730 | 42.012 | 338 | 169 | 8 | 17 | 333 | 1 | 332 | 1.41e-74 | 235 |
| MS.gene021944.t1 | AT4G19770 | 41.016 | 256 | 141 | 4 | 115 | 362 | 1 | 254 | 1.58e-57 | 189 |
| MS.gene021944.t1 | AT4G19740 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 3.27e-28 | 110 |
Find 94 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7.1:+81056999 | None:intergenic |
| CTATAAATTCTACGGTTATT+AGG | 0.196560 | 7.1:+81056574 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7.1:+81057311 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7.1:+81056739 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7.1:-81057324 | MS.gene021944:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7.1:-81056391 | MS.gene021944:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.276084 | 7.1:-81056619 | MS.gene021944:CDS |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7.1:+81057334 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7.1:-81057314 | MS.gene021944:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7.1:+81056606 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7.1:-81056672 | MS.gene021944:CDS |
| CTATGGTTACAAATGGAGTT+TGG | 0.324431 | 7.1:-81056602 | MS.gene021944:CDS |
| GTTGGTTATGCCAAGCAAAA+TGG | 0.331837 | 7.1:-81056400 | MS.gene021944:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7.1:+81056683 | None:intergenic |
| CGAATTACTCTTTGACTGAA+TGG | 0.366334 | 7.1:+81057146 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7.1:-81056892 | MS.gene021944:CDS |
| GAAGTTGAAATGACCAACTT+TGG | 0.388370 | 7.1:-81056946 | MS.gene021944:CDS |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7.1:+81056873 | None:intergenic |
| CTGCACTAAATTGGCCAGTT+GGG | 0.400370 | 7.1:+81056692 | None:intergenic |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7.1:-81056468 | MS.gene021944:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7.1:-81056900 | MS.gene021944:CDS |
| GCTCCTTTGAAAAGCCCAAC+TGG | 0.428457 | 7.1:-81056706 | MS.gene021944:CDS |
| AGTAAAGCTACGCAGGGACT+AGG | 0.428936 | 7.1:-81056553 | MS.gene021944:CDS |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7.1:-81056791 | MS.gene021944:CDS |
| GTAAAGCTACGCAGGGACTA+GGG | 0.431578 | 7.1:-81056552 | MS.gene021944:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7.1:-81056609 | MS.gene021944:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7.1:-81056354 | MS.gene021944:CDS |
| CATTCAGTCAAAGAGTAATT+CGG | 0.447076 | 7.1:-81057145 | MS.gene021944:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7.1:+81057254 | None:intergenic |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7.1:-81056469 | MS.gene021944:CDS |
| CTTGGTTGGTATTAGAATCA+AGG | 0.461412 | 7.1:+81057217 | None:intergenic |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7.1:-81056984 | MS.gene021944:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7.1:-81056459 | MS.gene021944:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7.1:-81056661 | MS.gene021944:CDS |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7.1:-81056792 | MS.gene021944:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7.1:+81056740 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7.1:-81056797 | MS.gene021944:CDS |
| GTCATTTCAACTTCTGAGGA+TGG | 0.479248 | 7.1:+81056955 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7.1:+81056727 | None:intergenic |
| TAGCTTTACTATAAATTCTA+CGG | 0.491563 | 7.1:+81056566 | None:intergenic |
| TGTGCCTTAGTAGAACGATC+AGG | 0.513185 | 7.1:+81057090 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7.1:+81056817 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.515102 | 7.1:+81056691 | None:intergenic |
| TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7.1:+81057359 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7.1:-81056671 | MS.gene021944:CDS |
| ACTGGCTTGGCTAGCCATGT+TGG | 0.520824 | 7.1:+81057059 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7.1:-81056337 | MS.gene021944:intron |
| AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 7.1:+81057191 | None:intergenic |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7.1:+81057340 | None:intergenic |
| CTTTACACTAGATTTGCCCC+AGG | 0.531539 | 7.1:+81055229 | None:intergenic |
| GTTGGTCATTTCAACTTCTG+AGG | 0.534568 | 7.1:+81056951 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7.1:-81056884 | MS.gene021944:CDS |
| TTGCTTGGCATAACCAACCT+TGG | 0.546803 | 7.1:+81056405 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7.1:+81056802 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7.1:+81056983 | None:intergenic |
| TGACTGAATGGTTTCAGTGA+AGG | 0.552685 | 7.1:+81057158 | None:intergenic |
| TGTAATGAGAAAACCAAAGT+TGG | 0.557402 | 7.1:+81056933 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7.1:-81056856 | MS.gene021944:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7.1:-81056859 | MS.gene021944:CDS |
| AATTTATAGTAAAGCTACGC+AGG | 0.562146 | 7.1:-81056560 | MS.gene021944:CDS |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.563235 | 7.1:+81057007 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7.1:-81056914 | MS.gene021944:CDS |
| TGGACCTGATCGTTCTACTA+AGG | 0.570680 | 7.1:-81057094 | MS.gene021944:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7.1:-81056685 | MS.gene021944:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7.1:-81056667 | MS.gene021944:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7.1:+81057255 | None:intergenic |
| CTGCAAATGCACAAAACAAG+TGG | 0.579073 | 7.1:+81057241 | None:intergenic |
| CAGAGTATATCTGCCAAGGT+TGG | 0.583504 | 7.1:-81056418 | MS.gene021944:CDS |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7.1:+81056607 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7.1:-81056666 | MS.gene021944:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7.1:-81056422 | MS.gene021944:CDS |
| ATCTAGTGTAAAGCATGTTG+TGG | 0.588380 | 7.1:-81055219 | MS.gene021944:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7.1:+81056977 | None:intergenic |
| TGAGGAGAGTGGAAATGAAG+AGG | 0.590297 | 7.1:+81057370 | None:intergenic |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7.1:+81056865 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7.1:-81056454 | MS.gene021944:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7.1:+81057326 | None:intergenic |
| ATTTATAGTAAAGCTACGCA+GGG | 0.611007 | 7.1:-81056559 | MS.gene021944:CDS |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7.1:-81056860 | MS.gene021944:CDS |
| TTTGCAGCTTCTCAAGCCTG+GGG | 0.621387 | 7.1:-81055245 | MS.gene021944:intron |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7.1:-81056551 | MS.gene021944:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7.1:-81057000 | MS.gene021944:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7.1:-81056536 | MS.gene021944:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7.1:+81057352 | None:intergenic |
| TGCAAATGCACAAAACAAGT+GGG | 0.643130 | 7.1:+81057242 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7.1:+81057277 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7.1:+81056803 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7.1:-81057321 | MS.gene021944:CDS |
| GTTGTGGCTATAGTCACACC+AGG | 0.665701 | 7.1:-81055203 | MS.gene021944:intron |
| AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 7.1:+81057203 | None:intergenic |
| GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 7.1:+81057199 | None:intergenic |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7.1:-81056820 | MS.gene021944:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7.1:+81056891 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7.1:+81056741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATACAATAATTGAA+AGG | + | chr7.1:81056907-81056926 | None:intergenic | 10.0% |
| !!! | TAATTAAATGTCATTTAAAT+AGG | - | chr7.1:81056753-81056772 | MS.gene021944:CDS | 10.0% |
| !! | GAAAAATATACATTTATCTA+TGG | - | chr7.1:81056457-81056476 | MS.gene021944:CDS | 15.0% |
| !!! | CTTTTTATAACTCTTTATAT+CGG | + | chr7.1:81057170-81057189 | None:intergenic | 15.0% |
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7.1:81056001-81056020 | MS.gene021944:intron | 20.0% |
| !! | ACTAAGTTGTAGTAAATATA+TGG | - | chr7.1:81056405-81056424 | MS.gene021944:CDS | 20.0% |
| !! | ATTATAAAAAGTTAAGCACA+AGG | + | chr7.1:81056557-81056576 | None:intergenic | 20.0% |
| !! | ATTCTATACCAATGTATAAA+GGG | - | chr7.1:81056523-81056542 | MS.gene021944:CDS | 20.0% |
| !! | CAGAACATGAAAAAAAAATT+GGG | + | chr7.1:81057349-81057368 | None:intergenic | 20.0% |
| !! | CATTGTATAAATGATGTATT+TGG | + | chr7.1:81056681-81056700 | None:intergenic | 20.0% |
| !! | CTAAGTTGTAGTAAATATAT+GGG | - | chr7.1:81056406-81056425 | MS.gene021944:CDS | 20.0% |
| !! | GTCAAATGTTTCTTATAAAT+AGG | - | chr7.1:81056711-81056730 | MS.gene021944:CDS | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7.1:81056000-81056019 | MS.gene021944:intron | 20.0% |
| !! | TATTCTATACCAATGTATAA+AGG | - | chr7.1:81056522-81056541 | MS.gene021944:CDS | 20.0% |
| !! | TCAGAACATGAAAAAAAAAT+TGG | + | chr7.1:81057350-81057369 | None:intergenic | 20.0% |
| !! | TTTGACATACCATTAAAAAT+AGG | + | chr7.1:81057218-81057237 | None:intergenic | 20.0% |
| !!! | CTTGTGTTTTTTTACTAAAA+GGG | - | chr7.1:81056287-81056306 | MS.gene021944:intron | 20.0% |
| !!! | GTCAACTTTTTCTTATAAAT+AGG | + | chr7.1:81056612-81056631 | None:intergenic | 20.0% |
| !!! | TAAGAAACATTTGACTTTTT+TGG | + | chr7.1:81056706-81056725 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTATAAATTCTA+CGG | + | chr7.1:81055957-81055976 | None:intergenic | 20.0% |
| !!! | TCTTGTGTTTTTTTACTAAA+AGG | - | chr7.1:81056286-81056305 | MS.gene021944:intron | 20.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7.1:81056003-81056022 | MS.gene021944:intron | 25.0% |
| ! | ATGTTTCTTATAAATAGGAC+CGG | - | chr7.1:81056716-81056735 | MS.gene021944:CDS | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7.1:81056002-81056021 | MS.gene021944:intron | 25.0% |
| ! | CAATAATTGAAAGGCAAAAT+TGG | + | chr7.1:81056898-81056917 | None:intergenic | 25.0% |
| ! | CTATAAATTCTACGGTTATT+AGG | + | chr7.1:81055949-81055968 | None:intergenic | 25.0% |
| ! | TTCTATACCAATGTATAAAG+GGG | - | chr7.1:81056524-81056543 | MS.gene021944:CDS | 25.0% |
| !! | AAGAATCTATGAACGATTTT+TGG | + | chr7.1:81055489-81055508 | None:intergenic | 25.0% |
| !! | AATTAAATTTTTACTCCCTC+CGG | + | chr7.1:81056738-81056757 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | + | chr7.1:81056607-81056626 | None:intergenic | 25.0% |
| !!! | CTTTTACCACCTATTTTTAA+TGG | - | chr7.1:81057206-81057225 | MS.gene021944:CDS | 25.0% |
| !!! | GTTGCATCTTTTTTTTTAAG+AGG | - | chr7.1:81056241-81056260 | MS.gene021944:intron | 25.0% |
| AAAATAGGTGGTAAAAGTCA+AGG | + | chr7.1:81057203-81057222 | None:intergenic | 30.0% | |
| AAATTGGACAAGACAACAAT+TGG | - | chr7.1:81056166-81056185 | MS.gene021944:intron | 30.0% | |
| AATTTATAGTAAAGCTACGC+AGG | - | chr7.1:81055960-81055979 | MS.gene021944:intron | 30.0% | |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7.1:81056051-81056070 | MS.gene021944:intron | 30.0% | |
| AGGATATAAAAAATACTGGG+GGG | - | chr7.1:81056004-81056023 | MS.gene021944:intron | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7.1:81055212-81055231 | None:intergenic | 30.0% | |
| ATTTATAGTAAAGCTACGCA+GGG | - | chr7.1:81055961-81055980 | MS.gene021944:intron | 30.0% | |
| CAACAAAGCAGTGTTTAATT+AGG | + | chr7.1:81056225-81056244 | None:intergenic | 30.0% | |
| CATTCAGTCAAAGAGTAATT+CGG | - | chr7.1:81055375-81055394 | MS.gene021944:intron | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7.1:81056052-81056071 | MS.gene021944:intron | 30.0% | |
| GACATACCATTAAAAATAGG+TGG | + | chr7.1:81057215-81057234 | None:intergenic | 30.0% | |
| GTAATTGATGTATCTTGTCT+AGG | - | chr7.1:81056648-81056667 | MS.gene021944:CDS | 30.0% | |
| TATAACTCTTTATATCGGCA+TGG | + | chr7.1:81057165-81057184 | None:intergenic | 30.0% | |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7.1:81055590-81055609 | None:intergenic | 30.0% | |
| TGTAGTAAATATATGGGCAA+TGG | - | chr7.1:81056412-81056431 | MS.gene021944:CDS | 30.0% | |
| ! | AAAAAAATTGGGTTAGAACC+TGG | + | chr7.1:81057338-81057357 | None:intergenic | 30.0% |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7.1:81055400-81055419 | MS.gene021944:intron | 30.0% |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7.1:81056142-81056161 | MS.gene021944:intron | 30.0% |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7.1:81055397-81055416 | MS.gene021944:intron | 30.0% |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7.1:81056046-81056065 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7.1:81055783-81055802 | None:intergenic | 30.0% |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7.1:81055269-81055288 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7.1:81055268-81055287 | None:intergenic | 35.0% | |
| ACAAAGCCTCTAAATTATCG+AGG | + | chr7.1:81056317-81056336 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7.1:81055917-81055936 | None:intergenic | 35.0% | |
| AGAACATCCCCTTTATACAT+TGG | + | chr7.1:81056534-81056553 | None:intergenic | 35.0% | |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7.1:81055849-81055868 | MS.gene021944:intron | 35.0% | |
| ATCTAGTGTAAAGCATGTTG+TGG | - | chr7.1:81057301-81057320 | MS.gene021944:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7.1:81055728-81055747 | MS.gene021944:intron | 35.0% | |
| CAATATTGCTTCTATTGTCG+TGG | + | chr7.1:81056804-81056823 | None:intergenic | 35.0% | |
| CACGACAATAGAAGCAATAT+TGG | - | chr7.1:81056802-81056821 | MS.gene021944:CDS | 35.0% | |
| CGAATTACTCTTTGACTGAA+TGG | + | chr7.1:81055377-81055396 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7.1:81055918-81055937 | MS.gene021944:intron | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7.1:81055916-81055935 | None:intergenic | 35.0% | |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7.1:81055574-81055593 | MS.gene021944:intron | 35.0% | |
| GCATTATCAATTACTTCCTC+CGG | - | chr7.1:81056585-81056604 | MS.gene021944:CDS | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7.1:81055911-81055930 | MS.gene021944:intron | 35.0% | |
| TAGGAACTCACAACAATAGA+TGG | - | chr7.1:81056772-81056791 | MS.gene021944:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7.1:81055723-81055742 | MS.gene021944:intron | 35.0% | |
| TCTATCGCTATAAGTGATGT+TGG | + | chr7.1:81056383-81056402 | None:intergenic | 35.0% | |
| TGCAAATGCACAAAACAAGT+GGG | + | chr7.1:81055281-81055300 | None:intergenic | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7.1:81055729-81055748 | MS.gene021944:intron | 35.0% | |
| TTCTTATAAATAGGACCGGA+GGG | - | chr7.1:81056720-81056739 | MS.gene021944:CDS | 35.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7.1:81055183-81055202 | None:intergenic | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | - | chr7.1:81056719-81056738 | MS.gene021944:CDS | 35.0% | |
| TTTCTTATAAATAGGACCGG+AGG | + | chr7.1:81056738-81056719 | None:intergenic | 35.0% | |
| ! | CTTGGTTGGTATTAGAATCA+AGG | + | chr7.1:81055306-81055325 | None:intergenic | 35.0% |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7.1:81056150-81056169 | MS.gene021944:intron | 35.0% |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7.1:81056133-81056152 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7.1:81055516-81055535 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7.1:81055784-81055803 | None:intergenic | 35.0% |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7.1:81055782-81055801 | None:intergenic | 35.0% |
| !!! | TATGAACGATTTTTGGCTAC+TGG | + | chr7.1:81055482-81055501 | None:intergenic | 35.0% |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7.1:81055854-81055873 | MS.gene021944:intron | 40.0% | |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7.1:81056183-81056202 | MS.gene021944:intron | 40.0% | |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7.1:81055171-81055190 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7.1:81055848-81055867 | MS.gene021944:intron | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7.1:81055189-81055208 | None:intergenic | 40.0% | |
| CTGCAAATGCACAAAACAAG+TGG | + | chr7.1:81055282-81055301 | None:intergenic | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7.1:81055206-81055225 | MS.gene021944:CDS | 40.0% | |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7.1:81055840-81055859 | None:intergenic | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7.1:81055246-81055265 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7.1:81055520-81055539 | MS.gene021944:intron | 40.0% | |
| GGCACAAAAATTTGCCAACA+TGG | - | chr7.1:81055447-81055466 | MS.gene021944:intron | 40.0% | |
| GGTCATCCTCGATAATTTAG+AGG | - | chr7.1:81056308-81056327 | MS.gene021944:intron | 40.0% | |
| GTGTAGAAGAAATGGTGACT+TGG | + | chr7.1:81055324-81055343 | None:intergenic | 40.0% | |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7.1:81055572-81055591 | None:intergenic | 40.0% | |
| GTTGGTTATGCCAAGCAAAA+TGG | - | chr7.1:81056120-81056139 | MS.gene021944:intron | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7.1:81055196-81055215 | MS.gene021944:intron | 40.0% | |
| TGACTGAATGGTTTCAGTGA+AGG | + | chr7.1:81055365-81055384 | None:intergenic | 40.0% | |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7.1:81055720-81055739 | None:intergenic | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7.1:81056066-81056085 | MS.gene021944:intron | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7.1:81055721-81055740 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7.1:81055197-81055216 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7.1:81055403-81055422 | MS.gene021944:intron | 40.0% |
| ! | GAAGAGGAACGAATGCTTTT+TGG | + | chr7.1:81055137-81055156 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7.1:81055568-81055587 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7.1:81055320-81055339 | None:intergenic | 40.0% |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7.1:81056129-81056148 | MS.gene021944:intron | 40.0% |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7.1:81055524-81055543 | None:intergenic | 40.0% |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7.1:81055593-81055612 | MS.gene021944:intron | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7.1:81055406-81055425 | MS.gene021944:intron | 40.0% |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7.1:81055199-81055218 | MS.gene021944:intron | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7.1:81056061-81056080 | MS.gene021944:intron | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7.1:81055660-81055679 | MS.gene021944:intron | 45.0% | |
| AGCTGCGTGTGTAGAAGAAA+TGG | + | chr7.1:81055332-81055351 | None:intergenic | 45.0% | |
| AGGTGTGCCAAAAAGCAAAC+TGG | - | chr7.1:81055879-81055898 | MS.gene021944:intron | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7.1:81056098-81056117 | MS.gene021944:intron | 45.0% | |
| CAGAGTATATCTGCCAAGGT+TGG | - | chr7.1:81056102-81056121 | MS.gene021944:intron | 45.0% | |
| CCAAAAAGCAAACTGGCACT+TGG | - | chr7.1:81055886-81055905 | MS.gene021944:intron | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7.1:81055859-81055878 | MS.gene021944:intron | 45.0% | |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7.1:81055831-81055850 | None:intergenic | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7.1:81055661-81055680 | MS.gene021944:intron | 45.0% | |
| CTTTACACTAGATTTGCCCC+AGG | + | chr7.1:81057294-81057313 | None:intergenic | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7.1:81055853-81055872 | MS.gene021944:intron | 45.0% | |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7.1:81055546-81055565 | None:intergenic | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7.1:81055901-81055920 | MS.gene021944:intron | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7.1:81055658-81055677 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7.1:81055835-81055854 | MS.gene021944:intron | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7.1:81055832-81055851 | None:intergenic | 45.0% | |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7.1:81055706-81055725 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGAAATGAAG+AGG | + | chr7.1:81055153-81055172 | None:intergenic | 45.0% | |
| TGGACCTGATCGTTCTACTA+AGG | - | chr7.1:81055426-81055445 | MS.gene021944:intron | 45.0% | |
| TGTGCCTTAGTAGAACGATC+AGG | + | chr7.1:81055433-81055452 | None:intergenic | 45.0% | |
| TTGCTTGGCATAACCAACCT+TGG | + | chr7.1:81056118-81056137 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7.1:81055164-81055183 | None:intergenic | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7.1:81055700-81055719 | MS.gene021944:intron | 45.0% |
| ! | AGTTGGGCTTTTCAAAGGAG+CGG | + | chr7.1:81055815-81055834 | None:intergenic | 45.0% |
| ! | TTTTGCAGCTTCTCAAGCCT+GGG | - | chr7.1:81057274-81057293 | MS.gene021944:CDS | 45.0% |
| ! | TTTTTGCAGCTTCTCAAGCC+TGG | - | chr7.1:81057273-81057292 | MS.gene021944:CDS | 45.0% |
| !! | CCAAGTGCCAGTTTGCTTTT+TGG | + | chr7.1:81055889-81055908 | None:intergenic | 45.0% |
| !!! | ACGATTTTTGGCTACTGGCT+TGG | + | chr7.1:81055477-81055496 | None:intergenic | 45.0% |
| !!! | AAAAAATAAGTTATATTTTA+CGG | + | chr7.1:81056831-81056850 | None:intergenic | 5.0% |
| !!! | TATTAAAAAATATTTTGTTT+TGG | - | chr7.1:81056857-81056876 | MS.gene021944:CDS | 5.0% |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7.1:81055984-81056003 | MS.gene021944:intron | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7.1:81055967-81055986 | MS.gene021944:intron | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7.1:81055968-81055987 | MS.gene021944:intron | 50.0% | |
| GTTGTGGCTATAGTCACACC+AGG | - | chr7.1:81057317-81057336 | MS.gene021944:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7.1:81055969-81055988 | MS.gene021944:intron | 50.0% | |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7.1:81055664-81055683 | MS.gene021944:intron | 50.0% | |
| TTTGCAGCTTCTCAAGCCTG+GGG | - | chr7.1:81057275-81057294 | MS.gene021944:CDS | 50.0% | |
| ! | GCTCCTTTGAAAAGCCCAAC+TGG | - | chr7.1:81055814-81055833 | MS.gene021944:intron | 50.0% |
| ! | GTTGGGCTTTTCAAAGGAGC+GGG | + | chr7.1:81055814-81055833 | None:intergenic | 50.0% |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7.1:81055536-81055555 | MS.gene021944:intron | 50.0% |
| ! | TGGCCAGTTGGGCTTTTCAA+AGG | + | chr7.1:81055820-81055839 | None:intergenic | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7.1:81055650-81055669 | None:intergenic | 50.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7.1:81055540-81055559 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7.1:81055796-81055815 | None:intergenic | 55.0% | |
| !! | ACTGGCTTGGCTAGCCATGT+TGG | + | chr7.1:81055464-81055483 | None:intergenic | 55.0% |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7.1:81055628-81055647 | MS.gene021944:intron | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7.1:81055632-81055651 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7.1:81055636-81055655 | MS.gene021944:intron | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7.1:81055606-81055625 | MS.gene021944:intron | 60.0% | |
| ! | GGGCTTTTCAAAGGAGCGGG+TGG | + | chr7.1:81055811-81055830 | None:intergenic | 60.0% |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7.1:81055620-81055639 | MS.gene021944:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 81055124 | 81057418 | 81055124 | ID=MS.gene021944 |
| chr7.1 | mRNA | 81055124 | 81057418 | 81055124 | ID=MS.gene021944.t1;Parent=MS.gene021944 |
| chr7.1 | exon | 81056338 | 81057418 | 81056338 | ID=MS.gene021944.t1.exon1;Parent=MS.gene021944.t1 |
| chr7.1 | CDS | 81056338 | 81057418 | 81056338 | ID=cds.MS.gene021944.t1;Parent=MS.gene021944.t1 |
| chr7.1 | exon | 81055204 | 81055260 | 81055204 | ID=MS.gene021944.t1.exon2;Parent=MS.gene021944.t1 |
| chr7.1 | CDS | 81055204 | 81055260 | 81055204 | ID=cds.MS.gene021944.t1;Parent=MS.gene021944.t1 |
| chr7.1 | exon | 81055124 | 81055140 | 81055124 | ID=MS.gene021944.t1.exon3;Parent=MS.gene021944.t1 |
| chr7.1 | CDS | 81055124 | 81055140 | 81055124 | ID=cds.MS.gene021944.t1;Parent=MS.gene021944.t1 |
| Gene Sequence |
| Protein sequence |
