AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041428

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041428.t1 MTR_4g116920 79.558 362 22 5 1 327 1 345 0.0 550
MS.gene041428.t1 MTR_3g110280 77.008 361 48 2 1 327 1 360 0.0 538
MS.gene041428.t1 MTR_3g110320 72.576 361 63 3 1 327 1 359 0.0 516
MS.gene041428.t1 MTR_3g110320 72.500 360 63 3 1 326 1 358 0.0 514
MS.gene041428.t1 MTR_1g013150 34.195 348 182 5 22 325 32 376 1.08e-58 194
MS.gene041428.t1 MTR_4g117000 33.136 338 180 6 30 324 35 369 1.18e-53 180
MS.gene041428.t1 MTR_4g117040 35.260 346 177 7 26 328 24 365 2.21e-52 184
MS.gene041428.t1 MTR_4g117020 32.698 367 199 8 3 327 2 362 8.99e-51 180
MS.gene041428.t1 MTR_4g116990 35.380 342 171 9 30 324 37 375 5.13e-49 168
MS.gene041428.t1 MTR_4g117030 33.739 329 172 7 41 327 1 325 1.14e-46 168
MS.gene041428.t1 MTR_4g117800 30.584 291 163 5 6 286 4 265 1.98e-34 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041428.t1 AT4G19810 47.765 358 142 5 11 327 9 362 8.54e-105 311
MS.gene041428.t1 AT4G19810 47.765 358 142 5 11 327 9 362 8.54e-105 311
MS.gene041428.t1 AT4G19820 43.017 358 161 6 10 327 6 360 2.70e-88 269
MS.gene041428.t1 AT4G19750 41.854 356 157 9 17 327 1 351 1.84e-82 254
MS.gene041428.t1 AT4G19800 42.478 339 151 6 29 327 6 340 1.46e-81 253
MS.gene041428.t1 AT4G19760 41.803 366 153 10 17 327 1 361 5.33e-81 251
MS.gene041428.t1 AT4G19720 40.173 346 154 9 30 327 6 346 9.76e-73 229
MS.gene041428.t1 AT4G19730 38.576 337 148 8 17 299 1 332 7.07e-61 197
MS.gene041428.t1 AT4G19770 38.735 253 116 4 114 327 1 253 1.39e-48 164
MS.gene041428.t1 AT4G19740 32.086 187 88 5 137 284 24 210 1.06e-19 86.3

Find 76 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACCACCAATTGATAAA+AGG 0.223608 8.2:-12250202 None:intergenic
GTTACTAATTATTGCTTCAT+AGG 0.237729 8.2:+12250854 MS.gene041428:CDS
GCCAAGCAAAATGGTTTGTT+TGG 0.270489 8.2:+12250932 MS.gene041428:CDS
ACTACAAACGCTGCCATTAA+AGG 0.272348 8.2:+12249993 MS.gene041428:CDS
ATACCAATAGCCACCTTTAA+TGG 0.272579 8.2:-12250006 None:intergenic
GTTGATTATGCCAAGCAAAA+TGG 0.313698 8.2:+12250923 MS.gene041428:CDS
CAACTTTGGTTTACTCATTA+CGG 0.336590 8.2:+12250382 MS.gene041428:CDS
GCCGAAGAGTCTAGCAGTTC+CGG 0.376104 8.2:+12250422 MS.gene041428:CDS
ATATTGAACAAGACAGCAAC+TGG 0.377045 8.2:+12250969 MS.gene041428:CDS
CAGCGTTTGTAGTGGATAAC+TGG 0.379954 8.2:-12249983 None:intergenic
ACAAAGATATAATAAATGTT+GGG 0.382597 8.2:+12250804 MS.gene041428:CDS
TAACAACAGTGTCGGCTTGC+CGG 0.396736 8.2:-12250441 None:intergenic
TACCTTCATCTACACTGAAT+TGG 0.403692 8.2:-12250637 None:intergenic
TAGATGAAGGTATCACAAAA+TGG 0.403845 8.2:+12250648 MS.gene041428:CDS
TCGATGGTCTTGATCTTGAC+TGG 0.423357 8.2:+12250330 MS.gene041428:CDS
ATTGCTTCATAGGGACAGAT+TGG 0.433223 8.2:+12250864 MS.gene041428:CDS
CCCACCACCAATTGATAAAA+GGG 0.437411 8.2:-12250201 None:intergenic
GAAGGTATCACAAAATGGAT+TGG 0.445585 8.2:+12250653 MS.gene041428:CDS
GACGCAGATAAGACCAACTT+TGG 0.446079 8.2:+12250368 MS.gene041428:CDS
TTACTAATTATTGCTTCATA+GGG 0.446458 8.2:+12250855 MS.gene041428:CDS
GTCTTATCTGCGTCGGAGGA+TGG 0.449077 8.2:-12250359 None:intergenic
CTGCCATTAAAGGTGGCTAT+TGG 0.451080 8.2:+12250003 MS.gene041428:CDS
ATCACAAAATGGATTGGGTT+AGG 0.453409 8.2:+12250659 MS.gene041428:CDS
TACAAAGATATAATAAATGT+TGG 0.455760 8.2:+12250803 MS.gene041428:CDS
TATAATAAATGTTGGGGCGC+AGG 0.456722 8.2:+12250811 MS.gene041428:CDS
GAACAAGTGGGTGAAATAAG+AGG 0.458120 8.2:-12250063 None:intergenic
TTATCAATTGGTGGTGGGAG+TGG 0.478266 8.2:+12250206 MS.gene041428:CDS
GCCGGAACTGCTAGACTCTT+CGG 0.478520 8.2:-12250423 None:intergenic
AAGGTATCACAAAATGGATT+GGG 0.479422 8.2:+12250654 MS.gene041428:CDS
GTTGGTTGGTATTAGAATCA+AGG 0.482451 8.2:-12250100 None:intergenic
GGCTATTGGTATTCTGATAG+TGG 0.488891 8.2:+12250017 MS.gene041428:CDS
TATCAATTGGTGGTGGGAGT+GGG 0.491417 8.2:+12250207 MS.gene041428:CDS
CGTAATGAGTAAACCAAAGT+TGG 0.491887 8.2:-12250381 None:intergenic
GTTATTTCTAGCAAGTTGAA+TGG 0.492439 8.2:-12250303 None:intergenic
CGATGGTCTTGATCTTGACT+GGG 0.498899 8.2:+12250331 MS.gene041428:CDS
GCATTGGGTGTACCTTTCTA+CGG 0.499133 8.2:+12250701 MS.gene041428:CDS
AACCTTCACTGAAACCGTTC+AGG 0.501026 8.2:+12250157 MS.gene041428:CDS
TGCCTGAACGGTTTCAGTGA+AGG 0.504697 8.2:-12250159 None:intergenic
AACTGGGCTCTTTCTCAAGC+AGG 0.514071 8.2:+12250986 MS.gene041428:CDS
TTGGAGAATCATGAGGAGAG+TGG 0.515988 8.2:-12249958 None:intergenic
TACCTTTCTACGGTTTCAAG+TGG 0.524260 8.2:+12250711 MS.gene041428:CDS
GCAATAATTAGTAACATATG+TGG 0.528980 8.2:-12250846 None:intergenic
TCTACACTGAATTGGCCTGT+TGG 0.531450 8.2:-12250629 None:intergenic
TGGGAGTGGGAATTCAACTT+TGG 0.532305 8.2:+12250220 MS.gene041428:CDS
CTCCACTTGAAACCGTAGAA+AGG 0.540691 8.2:-12250713 None:intergenic
CGTTCAGGCAAAGAGTAGTT+CGG 0.545594 8.2:+12250172 MS.gene041428:CDS
TTGTAGTGGATAACTGGAGT+TGG 0.559958 8.2:-12249977 None:intergenic
CGAACTACTCTTTGCCTGAA+CGG 0.560291 8.2:-12250171 None:intergenic
CAGCAAATGCACAGAACAAG+TGG 0.562193 8.2:-12250076 None:intergenic
TTGAATGGAAGAATCTATGA+AGG 0.562305 8.2:-12250288 None:intergenic
ACTGTTGTTATCTGCTGCCG+TGG 0.563089 8.2:+12250454 MS.gene041428:CDS
TTGCTTGGCATAATCAACCT+TGG 0.564771 8.2:-12250918 None:intergenic
TTTAATGGCAGCGTTTGTAG+TGG 0.573580 8.2:-12249991 None:intergenic
AACAAGTGGGTGAAATAAGA+GGG 0.575691 8.2:-12250062 None:intergenic
TACGGAGTGGAGAGCTGCTG+TGG 0.585644 8.2:+12250400 MS.gene041428:CDS
GGCCAATTCAGTGTAGATGA+AGG 0.587139 8.2:+12250635 MS.gene041428:CDS
CACTCAGAGTATATCTGCCA+AGG 0.587655 8.2:+12250901 MS.gene041428:CDS
CAAAGATATAATAAATGTTG+GGG 0.588056 8.2:+12250805 MS.gene041428:CDS
AGAAGAAATAGTGAGTTGGT+TGG 0.600058 8.2:-12250114 None:intergenic
TGAGGAGAGTGGAAATCAAG+AGG 0.606133 8.2:-12249947 None:intergenic
GTTGGTCTTATCTGCGTCGG+AGG 0.608938 8.2:-12250363 None:intergenic
TTCATAGGGACAGATTGGTA+TGG 0.610823 8.2:+12250869 MS.gene041428:CDS
AAAGTTGGTCTTATCTGCGT+CGG 0.619971 8.2:-12250366 None:intergenic
GCTAGAAATAACAACTTCGA+TGG 0.620728 8.2:+12250314 MS.gene041428:CDS
CTGTTGTTATCTGCTGCCGT+GGG 0.631201 8.2:+12250455 MS.gene041428:CDS
TTGTAGAAGAAATAGTGAGT+TGG 0.631938 8.2:-12250118 None:intergenic
TTGATCAAGCTACACAGGGG+GGG 0.641393 8.2:+12250765 MS.gene041428:CDS
GCAGCAGATAACAACAGTGT+CGG 0.645075 8.2:-12250449 None:intergenic
GGGCTCTTTCTCAAGCAGGT+AGG 0.646725 8.2:+12250990 MS.gene041428:CDS
GATCAATGTCAGAAACTGCA+AGG 0.646791 8.2:-12250040 None:intergenic
TTGGTTTACTCATTACGGAG+TGG 0.651665 8.2:+12250387 MS.gene041428:CDS
TTTGATCAAGCTACACAGGG+GGG 0.654485 8.2:+12250764 MS.gene041428:CDS
ACTGGAGTTGGAGAATCATG+AGG 0.662538 8.2:-12249965 None:intergenic
ACAAACGCTGCCATTAAAGG+TGG 0.672366 8.2:+12249996 MS.gene041428:CDS
TATTGAACAAGACAGCAACT+GGG 0.675280 8.2:+12250970 MS.gene041428:CDS
AGCAAATGCACAGAACAAGT+GGG 0.684809 8.2:-12250075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAGATATAATAAATGTT+GGG + chr8.2:12250804-12250823 MS.gene041428:CDS 15.0%
!! TACAAAGATATAATAAATGT+TGG + chr8.2:12250803-12250822 MS.gene041428:CDS 15.0%
!! CAAAGATATAATAAATGTTG+GGG + chr8.2:12250805-12250824 MS.gene041428:CDS 20.0%
!! TCAAAAATTTCATGGTTATT+AGG - chr8.2:12250749-12250768 None:intergenic 20.0%
!! TTACTAATTATTGCTTCATA+GGG + chr8.2:12250855-12250874 MS.gene041428:CDS 20.0%
! GCAATAATTAGTAACATATG+TGG - chr8.2:12250849-12250868 None:intergenic 25.0%
! GTTACTAATTATTGCTTCAT+AGG + chr8.2:12250854-12250873 MS.gene041428:CDS 25.0%
! TAGCTTGATCAAAAATTTCA+TGG - chr8.2:12250757-12250776 None:intergenic 25.0%
!! AAGAATCTATGAAGGATTTT+CGG - chr8.2:12250283-12250302 None:intergenic 25.0%
ATATTGCAAACAACTTGGAT+TGG + chr8.2:12250522-12250541 MS.gene041428:intron 30.0%
GGCAAAAAAAATTGCTGATA+TGG + chr8.2:12250241-12250260 MS.gene041428:CDS 30.0%
TATTGCAAACAACTTGGATT+GGG + chr8.2:12250523-12250542 MS.gene041428:intron 30.0%
TTGAATGGAAGAATCTATGA+AGG - chr8.2:12250291-12250310 None:intergenic 30.0%
TTGTAGAAGAAATAGTGAGT+TGG - chr8.2:12250121-12250140 None:intergenic 30.0%
! AAAACCCTTTTATCAATTGG+TGG + chr8.2:12250197-12250216 MS.gene041428:CDS 30.0%
! AAGGTATCACAAAATGGATT+GGG + chr8.2:12250654-12250673 MS.gene041428:CDS 30.0%
! AATTTTTGATCAAGCTACAC+AGG + chr8.2:12250760-12250779 MS.gene041428:CDS 30.0%
! ATTTTTGATCAAGCTACACA+GGG + chr8.2:12250761-12250780 MS.gene041428:CDS 30.0%
! CAACTTTGGTTTACTCATTA+CGG + chr8.2:12250382-12250401 MS.gene041428:CDS 30.0%
! GTGAAAACCCTTTTATCAAT+TGG + chr8.2:12250194-12250213 MS.gene041428:CDS 30.0%
! GTTTGTTTGGATATTTTGCT+TGG + chr8.2:12250945-12250964 MS.gene041428:CDS 30.0%
!! GTTATTTCTAGCAAGTTGAA+TGG - chr8.2:12250306-12250325 None:intergenic 30.0%
!! TAGATGAAGGTATCACAAAA+TGG + chr8.2:12250648-12250667 MS.gene041428:CDS 30.0%
AACAAGTGGGTGAAATAAGA+GGG - chr8.2:12250065-12250084 None:intergenic 35.0%
ATACCAATAGCCACCTTTAA+TGG - chr8.2:12250009-12250028 None:intergenic 35.0%
ATATTGAACAAGACAGCAAC+TGG + chr8.2:12250969-12250988 MS.gene041428:CDS 35.0%
CCAAAAAGCAAACTAGCATT+GGG + chr8.2:12250686-12250705 MS.gene041428:CDS 35.0%
CGTAATGAGTAAACCAAAGT+TGG - chr8.2:12250384-12250403 None:intergenic 35.0%
GCTAGAAATAACAACTTCGA+TGG + chr8.2:12250314-12250333 MS.gene041428:CDS 35.0%
GTTGATTATGCCAAGCAAAA+TGG + chr8.2:12250923-12250942 MS.gene041428:CDS 35.0%
TACCTTCATCTACACTGAAT+TGG - chr8.2:12250640-12250659 None:intergenic 35.0%
TATTGAACAAGACAGCAACT+GGG + chr8.2:12250970-12250989 MS.gene041428:CDS 35.0%
TCAGGATATTGCAAACAACT+TGG + chr8.2:12250517-12250536 MS.gene041428:intron 35.0%
TCCAAAAAGCAAACTAGCAT+TGG + chr8.2:12250685-12250704 MS.gene041428:CDS 35.0%
! CAAGAGGAATGAATGCTTTT+TGG - chr8.2:12249934-12249953 None:intergenic 35.0%
! CTTAGTTTGATAGCTATCTG+AGG - chr8.2:12250582-12250601 None:intergenic 35.0%
! GTTGGTTGGTATTAGAATCA+AGG - chr8.2:12250103-12250122 None:intergenic 35.0%
! TCCAAACAAACCATTTTGCT+TGG - chr8.2:12250936-12250955 None:intergenic 35.0%
! TTTTTGATCAAGCTACACAG+GGG + chr8.2:12250762-12250781 MS.gene041428:CDS 35.0%
!! AGAAGAAATAGTGAGTTGGT+TGG - chr8.2:12250117-12250136 None:intergenic 35.0%
!! ATCACAAAATGGATTGGGTT+AGG + chr8.2:12250659-12250678 MS.gene041428:CDS 35.0%
!! GAAGGTATCACAAAATGGAT+TGG + chr8.2:12250653-12250672 MS.gene041428:CDS 35.0%
ACCTGGGTAGTATTCCTAAT+GGG - chr8.2:12250498-12250517 None:intergenic 40.0%
ACTACAAACGCTGCCATTAA+AGG + chr8.2:12249993-12250012 MS.gene041428:CDS 40.0%
AGCAAATGCACAGAACAAGT+GGG - chr8.2:12250078-12250097 None:intergenic 40.0%
ATTGCTTCATAGGGACAGAT+TGG + chr8.2:12250864-12250883 MS.gene041428:CDS 40.0%
CCCACCACCAATTGATAAAA+GGG - chr8.2:12250204-12250223 None:intergenic 40.0%
GAACAAGTGGGTGAAATAAG+AGG - chr8.2:12250066-12250085 None:intergenic 40.0%
GATCAATGTCAGAAACTGCA+AGG - chr8.2:12250043-12250062 None:intergenic 40.0%
GGCTATTGGTATTCTGATAG+TGG + chr8.2:12250017-12250036 MS.gene041428:CDS 40.0%
TACCTTTCTACGGTTTCAAG+TGG + chr8.2:12250711-12250730 MS.gene041428:CDS 40.0%
TATAATAAATGTTGGGGCGC+AGG + chr8.2:12250811-12250830 MS.gene041428:CDS 40.0%
TCCCACCACCAATTGATAAA+AGG - chr8.2:12250205-12250224 None:intergenic 40.0%
TGTTTGCAATATCCTGACCT+GGG - chr8.2:12250514-12250533 None:intergenic 40.0%
TTCATAGGGACAGATTGGTA+TGG + chr8.2:12250869-12250888 MS.gene041428:CDS 40.0%
TTGCTTGGCATAATCAACCT+TGG - chr8.2:12250921-12250940 None:intergenic 40.0%
TTGGTTTACTCATTACGGAG+TGG + chr8.2:12250387-12250406 MS.gene041428:CDS 40.0%
TTGTTTGCAATATCCTGACC+TGG - chr8.2:12250515-12250534 None:intergenic 40.0%
TTTAATGGCAGCGTTTGTAG+TGG - chr8.2:12249994-12250013 None:intergenic 40.0%
! ACCCTTTTATCAATTGGTGG+TGG + chr8.2:12250200-12250219 MS.gene041428:CDS 40.0%
! GCTCCTTTGAAAAATCCAAC+AGG + chr8.2:12250614-12250633 MS.gene041428:CDS 40.0%
! TATGAAGGATTTTCGGCTAC+TGG - chr8.2:12250276-12250295 None:intergenic 40.0%
! TTTTGATCAAGCTACACAGG+GGG + chr8.2:12250763-12250782 MS.gene041428:CDS 40.0%
!! AAAGTTGGTCTTATCTGCGT+CGG - chr8.2:12250369-12250388 None:intergenic 40.0%
!! CCCTTTTATCAATTGGTGGT+GGG + chr8.2:12250201-12250220 MS.gene041428:CDS 40.0%
!! GCCAAGCAAAATGGTTTGTT+TGG + chr8.2:12250932-12250951 MS.gene041428:CDS 40.0%
!! GTTGGATTTTTCAAAGGAGC+AGG - chr8.2:12250614-12250633 None:intergenic 40.0%
!! TGGCCTGTTGGATTTTTCAA+AGG - chr8.2:12250620-12250639 None:intergenic 40.0%
!! TTGTAGTGGATAACTGGAGT+TGG - chr8.2:12249980-12249999 None:intergenic 40.0%
!!! CCCAATGCTAGTTTGCTTTT+TGG - chr8.2:12250689-12250708 None:intergenic 40.0%
AACCTTCACTGAAACCGTTC+AGG + chr8.2:12250157-12250176 MS.gene041428:CDS 45.0%
ACAAACGCTGCCATTAAAGG+TGG + chr8.2:12249996-12250015 MS.gene041428:CDS 45.0%
ACCCATTAGGAATACTACCC+AGG + chr8.2:12250494-12250513 MS.gene041428:intron 45.0%
ACTGGAGTTGGAGAATCATG+AGG - chr8.2:12249968-12249987 None:intergenic 45.0%
CACTCAGAGTATATCTGCCA+AGG + chr8.2:12250901-12250920 MS.gene041428:CDS 45.0%
CAGCAAATGCACAGAACAAG+TGG - chr8.2:12250079-12250098 None:intergenic 45.0%
CGAACTACTCTTTGCCTGAA+CGG - chr8.2:12250174-12250193 None:intergenic 45.0%
CGTTCAGGCAAAGAGTAGTT+CGG + chr8.2:12250172-12250191 MS.gene041428:CDS 45.0%
CTCCACTTGAAACCGTAGAA+AGG - chr8.2:12250716-12250735 None:intergenic 45.0%
CTCTGATCAGATCACCCATT+AGG + chr8.2:12250481-12250500 MS.gene041428:intron 45.0%
CTGCCATTAAAGGTGGCTAT+TGG + chr8.2:12250003-12250022 MS.gene041428:CDS 45.0%
GACCTGGGTAGTATTCCTAA+TGG - chr8.2:12250499-12250518 None:intergenic 45.0%
GACGCAGATAAGACCAACTT+TGG + chr8.2:12250368-12250387 MS.gene041428:CDS 45.0%
GCAGCAGATAACAACAGTGT+CGG - chr8.2:12250452-12250471 None:intergenic 45.0%
GCATTGGGTGTACCTTTCTA+CGG + chr8.2:12250701-12250720 MS.gene041428:CDS 45.0%
GGCCAATTCAGTGTAGATGA+AGG + chr8.2:12250635-12250654 MS.gene041428:CDS 45.0%
TGAGGAGAGTGGAAATCAAG+AGG - chr8.2:12249950-12249969 None:intergenic 45.0%
TGGGAGTGGGAATTCAACTT+TGG + chr8.2:12250220-12250239 MS.gene041428:CDS 45.0%
TTAGGAATACTACCCAGGTC+AGG + chr8.2:12250499-12250518 MS.gene041428:intron 45.0%
TTGGAGAATCATGAGGAGAG+TGG - chr8.2:12249961-12249980 None:intergenic 45.0%
TTTGATCAAGCTACACAGGG+GGG + chr8.2:12250764-12250783 MS.gene041428:CDS 45.0%
! CGATGGTCTTGATCTTGACT+GGG + chr8.2:12250331-12250350 MS.gene041428:CDS 45.0%
! TATCTGAGGTCGAGGTGTAA+AGG - chr8.2:12250568-12250587 None:intergenic 45.0%
! TCGATGGTCTTGATCTTGAC+TGG + chr8.2:12250330-12250349 MS.gene041428:CDS 45.0%
! TCTACACTGAATTGGCCTGT+TGG - chr8.2:12250632-12250651 None:intergenic 45.0%
! TTGATAGCTATCTGAGGTCG+AGG - chr8.2:12250576-12250595 None:intergenic 45.0%
!! CAGCGTTTGTAGTGGATAAC+TGG - chr8.2:12249986-12250005 None:intergenic 45.0%
!! GGATTTTTCAAAGGAGCAGG+TGG - chr8.2:12250611-12250630 None:intergenic 45.0%
!! TATCAATTGGTGGTGGGAGT+GGG + chr8.2:12250207-12250226 MS.gene041428:CDS 45.0%
!! TTATCAATTGGTGGTGGGAG+TGG + chr8.2:12250206-12250225 MS.gene041428:CDS 45.0%
AACTGGGCTCTTTCTCAAGC+AGG + chr8.2:12250986-12251005 MS.gene041428:CDS 50.0%
ACTGTTGTTATCTGCTGCCG+TGG + chr8.2:12250454-12250473 MS.gene041428:CDS 50.0%
CTGTTGTTATCTGCTGCCGT+GGG + chr8.2:12250455-12250474 MS.gene041428:CDS 50.0%
TGCCTGAACGGTTTCAGTGA+AGG - chr8.2:12250162-12250181 None:intergenic 50.0%
TTGATCAAGCTACACAGGGG+GGG + chr8.2:12250765-12250784 MS.gene041428:CDS 50.0%
!! AGGATTTTCGGCTACTGGCT+TGG - chr8.2:12250271-12250290 None:intergenic 50.0%
!! TAACAACAGTGTCGGCTTGC+CGG - chr8.2:12250444-12250463 None:intergenic 50.0%
GATCTGATCAGAGCCACCCA+CGG - chr8.2:12250474-12250493 None:intergenic 55.0%
GCCGAAGAGTCTAGCAGTTC+CGG + chr8.2:12250422-12250441 MS.gene041428:CDS 55.0%
GCCGGAACTGCTAGACTCTT+CGG - chr8.2:12250426-12250445 None:intergenic 55.0%
GGGCTCTTTCTCAAGCAGGT+AGG + chr8.2:12250990-12251009 MS.gene041428:CDS 55.0%
GTCTTATCTGCGTCGGAGGA+TGG - chr8.2:12250362-12250381 None:intergenic 55.0%
TTGTTATCTGCTGCCGTGGG+TGG + chr8.2:12250458-12250477 MS.gene041428:intron 55.0%
!! GTTGGTCTTATCTGCGTCGG+AGG - chr8.2:12250366-12250385 None:intergenic 55.0%
TACGGAGTGGAGAGCTGCTG+TGG + chr8.2:12250400-12250419 MS.gene041428:CDS 60.0%
! AAGCTACACAGGGGGGGCAT+GGG + chr8.2:12250771-12250790 MS.gene041428:CDS 60.0%
CAAGCTACACAGGGGGGGCA+TGG + chr8.2:12250770-12250789 MS.gene041428:CDS 65.0%
! AGCTACACAGGGGGGGCATG+GGG + chr8.2:12250772-12250791 MS.gene041428:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 12249921 12251015 12249921 ID=MS.gene041428
chr8.2 mRNA 12249921 12251015 12249921 ID=MS.gene041428.t1;Parent=MS.gene041428
chr8.2 exon 12249921 12250476 12249921 ID=MS.gene041428.t1.exon1;Parent=MS.gene041428.t1
chr8.2 CDS 12249921 12250476 12249921 ID=cds.MS.gene041428.t1;Parent=MS.gene041428.t1
chr8.2 exon 12250585 12251015 12250585 ID=MS.gene041428.t1.exon2;Parent=MS.gene041428.t1
chr8.2 CDS 12250585 12251015 12250585 ID=cds.MS.gene041428.t1;Parent=MS.gene041428.t1
Gene Sequence

>MS.gene041428

ATGGCTTACTCCAAAAAGCATTCATTCCTCTTGATTTCCACTCTCCTCATGATTCTCCAACTCCAGTTATCCACTACAAACGCTGCCATTAAAGGTGGCTATTGGTATTCTGATAGTGGCCTTGCAGTTTCTGACATTGATCCCTCTTATTTCACCCACTTGTTCTGTGCATTTGCTGACCTTGATTCTAATACCAACCAACTCACTATTTCTTCTACAAACACAGCTAGTTTCTCAACCTTCACTGAAACCGTTCAGGCAAAGAGTAGTTCGGTGAAAACCCTTTTATCAATTGGTGGTGGGAGTGGGAATTCAACTTTGGCAAAAAAAATTGCTGATATGGCTAGCCAAGCCAGTAGCCGAAAATCCTTCATAGATTCTTCCATTCAACTTGCTAGAAATAACAACTTCGATGGTCTTGATCTTGACTGGGAGTATCCATCCTCCGACGCAGATAAGACCAACTTTGGTTTACTCATTACGGAGTGGAGAGCTGCTGTGGCCGAAGAGTCTAGCAGTTCCGGCAAGCCGACACTGTTGTTATCTGCTGCCGTGGGTGGCTCTGATCAGATCACCCATTAGGAATACTACCCAGGTCAGGATATTGCAAACAACTTGGATTGGGTCAATGTAATGACTTATGACCTTTACACCTCGACCTCAGATAGCTATCAAACTAAGACACAACCACCTGCTCCTTTGAAAAATCCAACAGGCCAATTCAGTGTAGATGAAGGTATCACAAAATGGATTGGGTTAGGAGTTCCAAAAAGCAAACTAGCATTGGGTGTACCTTTCTACGGTTTCAAGTGGAGTTTGTCAGATCCTAATAACCATGAAATTTTTGATCAAGCTACACAGGGGGGGCATGGGGCAGTGAAGTACAAAGATATAATAAATGTTGGGGCGCAGGTTGTGTACAATTCCACATATGTTACTAATTATTGCTTCATAGGGACAGATTGGTATGGATACGATGACACTCAGAGTATATCTGCCAAGGTTGATTATGCCAAGCAAAATGGTTTGTTTGGATATTTTGCTTGGCATATTGAACAAGACAGCAACTGGGCTCTTTCTCAAGCAGGTAGGTAG
Protein sequence

>MS.gene041428.t1

MAYSKKHSFLLISTLLMILQLQLSTTNAAIKGGYWYSDSGLAVSDIDPSYFTHLFCAFADLDSNTNQLTISSTNTASFSTFTETVQAKSSSVKTLLSIGGGSGNSTLAKKIADMASQASSRKSFIDSSIQLARNNNFDGLDLDWEYPSSDADKTNFGLLITEWRAAVAEESSSSGKPTLLLSAAVDSYQTKTQPPAPLKNPTGQFSVDEGITKWIGLGVPKSKLALGVPFYGFKWSLSDPNNHEIFDQATQGGHGAVKYKDIINVGAQVVYNSTYVTNYCFIGTDWYGYDDTQSISAKVDYAKQNGLFGYFAWHIEQDSNWALSQAGR