Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019484.t1 | XP_013444929.1 | 95.5 | 382 | 17 | 0 | 1 | 382 | 1 | 382 | 5.30E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019484.t1 | Q9FVQ0 | 55.9 | 376 | 166 | 0 | 3 | 378 | 2 | 377 | 5.0e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019484.t1 | A0A072TN89 | 95.5 | 382 | 17 | 0 | 1 | 382 | 1 | 382 | 3.8e-216 | 760.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019484 | MS.gene60245 | PPI |
| MS.gene019484 | MS.gene061851 | PPI |
| MS.gene019484 | MS.gene64265 | PPI |
| MS.gene019484 | MS.gene56048 | PPI |
| MS.gene019484 | MS.gene018590 | PPI |
| MS.gene019484 | MS.gene059027 | PPI |
| MS.gene019484 | MS.gene015953 | PPI |
| MS.gene51580 | MS.gene019484 | PPI |
| MS.gene24021 | MS.gene019484 | PPI |
| MS.gene019484 | MS.gene064951 | PPI |
| MS.gene019484 | MS.gene32792 | PPI |
| MS.gene019484 | MS.gene61665 | PPI |
| MS.gene019484 | MS.gene059136 | PPI |
| MS.gene23537 | MS.gene019484 | PPI |
| MS.gene019484 | MS.gene021474 | PPI |
| MS.gene019484 | MS.gene53594 | PPI |
| MS.gene019484 | MS.gene038029 | PPI |
| MS.gene019484 | MS.gene014685 | PPI |
| MS.gene94810 | MS.gene019484 | PPI |
| MS.gene019484 | MS.gene31616 | PPI |
| MS.gene019484 | MS.gene09884 | PPI |
| MS.gene019484 | MS.gene40340 | PPI |
| MS.gene031178 | MS.gene019484 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019484.t1 | MTR_8g432640 | 95.550 | 382 | 17 | 0 | 1 | 382 | 1 | 382 | 0.0 | 761 |
| MS.gene019484.t1 | MTR_5g033260 | 84.555 | 382 | 59 | 0 | 1 | 382 | 1 | 382 | 0.0 | 677 |
| MS.gene019484.t1 | MTR_3g088925 | 51.852 | 378 | 180 | 2 | 3 | 379 | 4 | 380 | 9.06e-142 | 409 |
| MS.gene019484.t1 | MTR_3g088945 | 51.323 | 378 | 182 | 2 | 3 | 379 | 4 | 380 | 1.58e-140 | 405 |
| MS.gene019484.t1 | MTR_7g107690 | 50.266 | 376 | 184 | 1 | 6 | 378 | 8 | 383 | 2.10e-140 | 405 |
| MS.gene019484.t1 | MTR_3g088955 | 50.794 | 378 | 184 | 2 | 3 | 379 | 4 | 380 | 2.93e-138 | 400 |
| MS.gene019484.t1 | MTR_4g051642 | 52.116 | 378 | 178 | 3 | 3 | 379 | 4 | 379 | 1.50e-137 | 398 |
| MS.gene019484.t1 | MTR_7g107710 | 48.691 | 382 | 194 | 2 | 1 | 381 | 1 | 381 | 5.66e-132 | 383 |
| MS.gene019484.t1 | MTR_3g109520 | 46.381 | 373 | 194 | 2 | 7 | 374 | 40 | 411 | 1.13e-123 | 363 |
| MS.gene019484.t1 | MTR_1g069275 | 48.138 | 376 | 185 | 5 | 7 | 376 | 26 | 397 | 2.11e-122 | 360 |
| MS.gene019484.t1 | MTR_1g011630 | 46.011 | 376 | 192 | 4 | 7 | 377 | 17 | 386 | 6.35e-118 | 348 |
| MS.gene019484.t1 | MTR_6g086870 | 44.327 | 379 | 202 | 3 | 7 | 377 | 21 | 398 | 1.23e-117 | 348 |
| MS.gene019484.t1 | MTR_7g099330 | 46.809 | 376 | 186 | 5 | 7 | 376 | 25 | 392 | 5.10e-117 | 346 |
| MS.gene019484.t1 | MTR_1g008380 | 44.267 | 375 | 202 | 3 | 7 | 376 | 43 | 415 | 8.23e-116 | 343 |
| MS.gene019484.t1 | MTR_1g046230 | 44.648 | 383 | 203 | 5 | 7 | 382 | 25 | 405 | 2.92e-115 | 342 |
| MS.gene019484.t1 | MTR_3g096030 | 68.681 | 182 | 33 | 1 | 1 | 182 | 1 | 158 | 7.64e-84 | 252 |
| MS.gene019484.t1 | MTR_7g099160 | 44.590 | 305 | 155 | 5 | 78 | 376 | 217 | 513 | 2.08e-81 | 259 |
| MS.gene019484.t1 | MTR_3g096020 | 53.097 | 113 | 15 | 3 | 212 | 323 | 1 | 76 | 2.61e-22 | 99.0 |
| MS.gene019484.t1 | MTR_8g037910 | 23.923 | 209 | 133 | 4 | 6 | 190 | 4 | 210 | 6.79e-12 | 65.9 |
| MS.gene019484.t1 | MTR_8g037910 | 23.923 | 209 | 133 | 4 | 6 | 190 | 4 | 210 | 1.09e-11 | 65.9 |
| MS.gene019484.t1 | MTR_8g037910 | 23.923 | 209 | 133 | 4 | 6 | 190 | 4 | 210 | 1.43e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019484.t1 | AT1G48910 | 55.851 | 376 | 166 | 0 | 3 | 378 | 2 | 377 | 1.48e-155 | 443 |
| MS.gene019484.t1 | AT1G21430 | 50.402 | 373 | 180 | 4 | 6 | 376 | 9 | 378 | 4.06e-131 | 381 |
| MS.gene019484.t1 | AT5G11320 | 47.326 | 374 | 184 | 4 | 7 | 375 | 18 | 383 | 2.65e-123 | 362 |
| MS.gene019484.t1 | AT5G25620 | 46.419 | 377 | 192 | 5 | 7 | 376 | 33 | 406 | 1.09e-121 | 358 |
| MS.gene019484.t1 | AT5G25620 | 46.419 | 377 | 192 | 5 | 7 | 376 | 33 | 406 | 3.22e-121 | 358 |
| MS.gene019484.t1 | AT1G04610 | 47.340 | 376 | 188 | 5 | 7 | 374 | 38 | 411 | 1.40e-120 | 356 |
| MS.gene019484.t1 | AT4G13260 | 46.257 | 374 | 195 | 2 | 7 | 375 | 29 | 401 | 1.61e-119 | 353 |
| MS.gene019484.t1 | AT4G32540 | 45.767 | 378 | 192 | 5 | 7 | 377 | 22 | 393 | 3.56e-119 | 352 |
| MS.gene019484.t1 | AT4G32540 | 45.623 | 377 | 192 | 5 | 7 | 377 | 22 | 391 | 5.04e-119 | 351 |
| MS.gene019484.t1 | AT1G04180 | 46.257 | 374 | 191 | 5 | 7 | 374 | 26 | 395 | 1.13e-115 | 343 |
| MS.gene019484.t1 | AT4G28720 | 44.473 | 389 | 196 | 6 | 7 | 382 | 26 | 407 | 2.98e-115 | 342 |
| MS.gene019484.t1 | AT5G43890 | 45.333 | 375 | 196 | 5 | 7 | 374 | 26 | 398 | 6.68e-114 | 338 |
| MS.gene019484.t1 | AT2G33230 | 44.681 | 376 | 197 | 5 | 7 | 374 | 33 | 405 | 6.60e-108 | 323 |
| MS.gene019484.t1 | AT5G11320 | 47.059 | 323 | 159 | 3 | 7 | 324 | 18 | 333 | 1.04e-104 | 313 |
| MS.gene019484.t1 | AT4G13260 | 47.872 | 282 | 142 | 1 | 7 | 283 | 29 | 310 | 1.21e-94 | 285 |
| MS.gene019484.t1 | AT4G13260 | 42.759 | 290 | 160 | 2 | 90 | 374 | 9 | 297 | 2.77e-77 | 241 |
| MS.gene019484.t1 | AT1G62560 | 25.822 | 213 | 129 | 4 | 6 | 190 | 13 | 224 | 9.86e-14 | 72.4 |
| MS.gene019484.t1 | AT1G62560 | 25.822 | 213 | 129 | 4 | 6 | 190 | 13 | 224 | 1.26e-13 | 72.4 |
Find 91 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTAGATTAAGATTT+TGG | 0.169572 | 8.1:+69505529 | None:intergenic |
| TTGCTTATGACCTCCATAAT+TGG | 0.213088 | 8.1:-69507192 | MS.gene019484:CDS |
| TACGGTGATCTGTCTGAATA+TGG | 0.271286 | 8.1:-69506612 | MS.gene019484:CDS |
| ATTGTAGGTGCTGGTCCTTC+TGG | 0.274701 | 8.1:-69507727 | MS.gene019484:CDS |
| GGATACATACATTACTCTTT+TGG | 0.299211 | 8.1:-69506646 | MS.gene019484:CDS |
| AAGATTGTTGTGCTTCTCTT+TGG | 0.300111 | 8.1:-69507645 | MS.gene019484:CDS |
| GTATTGAAGGAATTGGTCTT+TGG | 0.306079 | 8.1:+69507525 | None:intergenic |
| AAGGGCTAGCACCCCAATTA+TGG | 0.312016 | 8.1:+69507179 | None:intergenic |
| GACTTGCAAGGAGAGGCTTA+TGG | 0.330544 | 8.1:-69505593 | MS.gene019484:CDS |
| GAGATGTAGAGGTCCTTCTT+TGG | 0.339757 | 8.1:+69506578 | None:intergenic |
| TGCTTATGACCTCCATAATT+GGG | 0.343385 | 8.1:-69507191 | MS.gene019484:CDS |
| AGATGTAGAGGTCCTTCTTT+GGG | 0.350821 | 8.1:+69506579 | None:intergenic |
| GATCAAGGAGGGAGCTATAA+AGG | 0.356826 | 8.1:-69506505 | MS.gene019484:intron |
| GAATTCACAGTTGTAATTGT+AGG | 0.358463 | 8.1:-69507742 | MS.gene019484:CDS |
| CGGAGGGTGGGTGAGGCATG+AGG | 0.359688 | 8.1:+69507563 | None:intergenic |
| TGTCTATGTATTGAAGGAAT+TGG | 0.360875 | 8.1:+69507518 | None:intergenic |
| TTTCCTAGTCCAGGCACATT+AGG | 0.372245 | 8.1:+69507316 | None:intergenic |
| CACTCTAAATACTACAAATC+TGG | 0.382747 | 8.1:-69507274 | MS.gene019484:CDS |
| ACTTGCAAGGAGAGGCTTAT+GGG | 0.385972 | 8.1:-69505592 | MS.gene019484:CDS |
| TGATCGTTTAAATCTCCATT+TGG | 0.407831 | 8.1:-69507608 | MS.gene019484:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 8.1:+69507512 | None:intergenic |
| TTCCATTGTCATTCGAAGTC+CGG | 0.430209 | 8.1:-69507158 | MS.gene019484:intron |
| CGTAGCTGCATGTCTTCACT+AGG | 0.443249 | 8.1:-69506722 | MS.gene019484:intron |
| ATTCCTAATGTGCCTGGACT+AGG | 0.444869 | 8.1:-69507319 | MS.gene019484:CDS |
| GTTATTGATGTTGGAACCAT+TGG | 0.446645 | 8.1:-69506531 | MS.gene019484:CDS |
| CCTTCAAAGTTTCCTAGTCC+AGG | 0.454925 | 8.1:+69507307 | None:intergenic |
| GGCTACAAAAGCATAGCTAA+TGG | 0.456499 | 8.1:-69506070 | MS.gene019484:CDS |
| AGGTATGTTGGTCCGGAGGG+TGG | 0.458769 | 8.1:+69507550 | None:intergenic |
| TATGTATCCACAACATGAAC+CGG | 0.459362 | 8.1:+69506660 | None:intergenic |
| GTTGGTCCGGAGGGTGGGTG+AGG | 0.464453 | 8.1:+69507556 | None:intergenic |
| GCGCATGGTGAAGTATTTGC+CGG | 0.467106 | 8.1:-69506679 | MS.gene019484:CDS |
| AATATGCTCTTAATGACAAA+GGG | 0.472589 | 8.1:-69505674 | MS.gene019484:CDS |
| AACTATCTTGTGATTGCCTC+CGG | 0.478425 | 8.1:-69507361 | MS.gene019484:CDS |
| TCCCTCCTTGATCTTTCCAA+TGG | 0.479573 | 8.1:+69506515 | None:intergenic |
| TTTGGATAGGTATGTTGGTC+CGG | 0.481867 | 8.1:+69507543 | None:intergenic |
| GAAGGAATTGGTCTTTGGAT+AGG | 0.482572 | 8.1:+69507530 | None:intergenic |
| GAGGGTGGGTGAGGCATGAG+GGG | 0.483319 | 8.1:+69507565 | None:intergenic |
| TCGATTCTCTTTATATTCGA+AGG | 0.485041 | 8.1:+69506157 | None:intergenic |
| AGCAAAACTCACTAGCCAAA+TGG | 0.488038 | 8.1:+69507593 | None:intergenic |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 8.1:-69507325 | MS.gene019484:CDS |
| CTCATGCCTCACCCACCCTC+CGG | 0.492928 | 8.1:-69507562 | MS.gene019484:CDS |
| TGGTCTTTGGATAGGTATGT+TGG | 0.498598 | 8.1:+69507538 | None:intergenic |
| GGAATTTATCGTCCCAAAGA+AGG | 0.502589 | 8.1:-69506591 | MS.gene019484:CDS |
| ATGATGAAGTTAGAAACAAA+TGG | 0.503942 | 8.1:-69507435 | MS.gene019484:CDS |
| ACAGTTGTAATTGTAGGTGC+TGG | 0.504959 | 8.1:-69507736 | MS.gene019484:CDS |
| GGAGGGTGGGTGAGGCATGA+GGG | 0.511610 | 8.1:+69507564 | None:intergenic |
| GGTATGTTGGTCCGGAGGGT+GGG | 0.511702 | 8.1:+69507551 | None:intergenic |
| ACTTCACCATGCGCATCCCT+TGG | 0.513625 | 8.1:+69506688 | None:intergenic |
| AAAATGCTTTCCCAAAGCAT+TGG | 0.514155 | 8.1:-69505644 | MS.gene019484:CDS |
| GATCATGGATTGTATTGTGC+AGG | 0.514647 | 8.1:-69505615 | MS.gene019484:CDS |
| TTCGAGTATGATATGAGAGA+TGG | 0.516881 | 8.1:+69507672 | None:intergenic |
| AAGTCTGCCGTTATTGATGT+TGG | 0.523041 | 8.1:-69506540 | MS.gene019484:CDS |
| TGCTTTCCCAAAGCATTGGA+AGG | 0.523788 | 8.1:-69505640 | MS.gene019484:CDS |
| CCTGGACTAGGAAACTTTGA+AGG | 0.535806 | 8.1:-69507307 | MS.gene019484:CDS |
| GATAGGTATGTTGGTCCGGA+GGG | 0.542390 | 8.1:+69507547 | None:intergenic |
| AAATATGCTCTTAATGACAA+AGG | 0.547569 | 8.1:-69505675 | MS.gene019484:CDS |
| GTATTTGCCGGTTCATGTTG+TGG | 0.548316 | 8.1:-69506667 | MS.gene019484:CDS |
| GTAGTCGGGTGTGGCAACTC+AGG | 0.551766 | 8.1:-69507223 | MS.gene019484:CDS |
| CGGGTGTGGCAACTCAGGAA+TGG | 0.553405 | 8.1:-69507218 | MS.gene019484:CDS |
| ATGAAGTTAGAAACAAATGG+AGG | 0.562153 | 8.1:-69507432 | MS.gene019484:CDS |
| GGACTTCGAATGACAATGGA+AGG | 0.562326 | 8.1:+69507160 | None:intergenic |
| TGGAACCATTGGAAAGATCA+AGG | 0.562660 | 8.1:-69506520 | MS.gene019484:CDS |
| TTAGACAAGCTGAAATTGCT+AGG | 0.565568 | 8.1:+69507704 | None:intergenic |
| AATGGTTCCAACATCAATAA+CGG | 0.565677 | 8.1:+69506533 | None:intergenic |
| GGATAGGTATGTTGGTCCGG+AGG | 0.572324 | 8.1:+69507546 | None:intergenic |
| CTTTCCCAAAGCATTGGAAG+GGG | 0.573417 | 8.1:-69505638 | MS.gene019484:CDS |
| GCTGAAATTGCTAGGCCAGA+AGG | 0.573450 | 8.1:+69507712 | None:intergenic |
| GCTTTCCCAAAGCATTGGAA+GGG | 0.574719 | 8.1:-69505639 | MS.gene019484:CDS |
| TGTATTGTGCAGGACTTGCA+AGG | 0.577420 | 8.1:-69505605 | MS.gene019484:CDS |
| CATAGCTAATGGATGGCTCA+AGG | 0.586622 | 8.1:-69506059 | MS.gene019484:intron |
| AGGCTTATGGGGAGTCAAAG+TGG | 0.586979 | 8.1:-69505580 | MS.gene019484:CDS |
| CTTGCAAGGAGAGGCTTATG+GGG | 0.592864 | 8.1:-69505591 | MS.gene019484:CDS |
| GCTTATGACCTCCATAATTG+GGG | 0.603166 | 8.1:-69507190 | MS.gene019484:CDS |
| ACCATTGGAAAGATCAAGGA+GGG | 0.604099 | 8.1:-69506516 | MS.gene019484:CDS |
| ACAAAAGCATAGCTAATGGA+TGG | 0.606759 | 8.1:-69506066 | MS.gene019484:CDS |
| TACCGGACTTCGAATGACAA+TGG | 0.611458 | 8.1:+69507156 | None:intergenic |
| TGTGCAGGACTTGCAAGGAG+AGG | 0.620346 | 8.1:-69505600 | MS.gene019484:CDS |
| CTAGGGAAATGATTCACCAA+GGG | 0.627746 | 8.1:-69506704 | MS.gene019484:CDS |
| GAACACACAAGATGACACAT+TGG | 0.629327 | 8.1:-69507398 | MS.gene019484:CDS |
| AAAACCTCGCTATTGTCGCA+TGG | 0.636805 | 8.1:-69507473 | MS.gene019484:CDS |
| GCCTCCGGTGAAAATAGTGA+AGG | 0.640492 | 8.1:-69507346 | MS.gene019484:CDS |
| TGAAGTTAGAAACAAATGGA+GGG | 0.648539 | 8.1:-69507431 | MS.gene019484:CDS |
| TTTCCCAAAGCATTGGAAGG+GGG | 0.650710 | 8.1:-69505637 | MS.gene019484:CDS |
| GTAGCTGCATGTCTTCACTA+GGG | 0.655762 | 8.1:-69506721 | MS.gene019484:intron |
| GGCTAGCACCCCAATTATGG+AGG | 0.656485 | 8.1:+69507182 | None:intergenic |
| ACTAGGGAAATGATTCACCA+AGG | 0.660715 | 8.1:-69506705 | MS.gene019484:CDS |
| ACCTCGCTATTGTCGCATGG+TGG | 0.669368 | 8.1:-69507470 | MS.gene019484:CDS |
| GATTCACCAAGGGATGCGCA+TGG | 0.671019 | 8.1:-69506694 | MS.gene019484:CDS |
| TCCACCATGCGACAATAGCG+AGG | 0.682577 | 8.1:+69507469 | None:intergenic |
| GACTTCGAATGACAATGGAA+GGG | 0.705434 | 8.1:+69507161 | None:intergenic |
| AACCATTGGAAAGATCAAGG+AGG | 0.739557 | 8.1:-69506517 | MS.gene019484:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAGTTAAACAAAA+AGG | + | chr8.1:69507026-69507045 | None:intergenic | 10.0% |
| !! | CTTATTATTAATTTACAATT+AGG | + | chr8.1:69507544-69507563 | None:intergenic | 10.0% |
| !!! | AGCATTATATAAAATAATTT+TGG | - | chr8.1:69507074-69507093 | MS.gene019484:intron | 10.0% |
| !!! | GCATTATATAAAATAATTTT+GGG | - | chr8.1:69507075-69507094 | MS.gene019484:intron | 10.0% |
| !! | AACTCAAAACTATAAATATA+AGG | + | chr8.1:69507381-69507400 | None:intergenic | 15.0% |
| !!! | AATTATGTAGATTAAGATTT+TGG | + | chr8.1:69507749-69507768 | None:intergenic | 15.0% |
| !!! | AGTTAAAAAAAAGTTTTTAC+CGG | + | chr8.1:69506139-69506158 | None:intergenic | 15.0% |
| !!! | ATATAAAATAATTTTGGGTT+TGG | - | chr8.1:69507080-69507099 | MS.gene019484:intron | 15.0% |
| !!! | CAAACAAAAAAAAAACTTTT+TGG | + | chr8.1:69506972-69506991 | None:intergenic | 15.0% |
| !!! | CTAAATACATTTTATATTCA+AGG | - | chr8.1:69506943-69506962 | MS.gene019484:intron | 15.0% |
| !!! | TTATGTGTAAAATTTTACAT+AGG | - | chr8.1:69506446-69506465 | MS.gene019484:intron | 15.0% |
| !! | CATTCAATATCTAATGTATT+TGG | - | chr8.1:69506908-69506927 | MS.gene019484:intron | 20.0% |
| !! | GTATAAATTTATACTCCATT+TGG | + | chr8.1:69507004-69507023 | None:intergenic | 20.0% |
| !!! | ATACGAATCAAAAAAAGTTT+TGG | - | chr8.1:69506030-69506049 | MS.gene019484:intron | 20.0% |
| !!! | TTTTTGCTTATAAATGTGAT+CGG | + | chr8.1:69506873-69506892 | None:intergenic | 20.0% |
| ! | AAAAAGAACAAAAGTTTACG+TGG | + | chr8.1:69507496-69507515 | None:intergenic | 25.0% |
| ! | AAAAGAACAAAAGTTTACGT+GGG | + | chr8.1:69507495-69507514 | None:intergenic | 25.0% |
| ! | AAATATGCTCTTAATGACAA+AGG | - | chr8.1:69507600-69507619 | MS.gene019484:CDS | 25.0% |
| ! | AATATGCTCTTAATGACAAA+GGG | - | chr8.1:69507601-69507620 | MS.gene019484:CDS | 25.0% |
| ! | ATGAAAAAATACGTGAGTAT+TGG | - | chr8.1:69506508-69506527 | MS.gene019484:CDS | 25.0% |
| ! | ATGATGAAGTTAGAAACAAA+TGG | - | chr8.1:69505840-69505859 | MS.gene019484:intron | 25.0% |
| ! | CAATTCTTTACAAACTAGTT+CGG | - | chr8.1:69507443-69507462 | MS.gene019484:CDS | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | + | chr8.1:69505766-69505785 | None:intergenic | 25.0% |
| ! | CTACATCTCAAAAATATTAC+AGG | - | chr8.1:69506711-69506730 | MS.gene019484:CDS | 25.0% |
| ! | GATCAAATTAGCAATAAGAT+TGG | + | chr8.1:69507303-69507322 | None:intergenic | 25.0% |
| ! | GTATAAGAAATAAAGTCCAA+AGG | + | chr8.1:69507520-69507539 | None:intergenic | 25.0% |
| ! | TCTATATTTCTCTTCATCTA+TGG | + | chr8.1:69507269-69507288 | None:intergenic | 25.0% |
| ! | TGAAAATGAAGAAGATAAGA+AGG | - | chr8.1:69507405-69507424 | MS.gene019484:CDS | 25.0% |
| !! | ACTTTTGTTCTTTTTTCCTT+TGG | - | chr8.1:69507501-69507520 | MS.gene019484:CDS | 25.0% |
| !!! | CTTTTGGCTAAACTAAAATA+CGG | - | chr8.1:69506645-69506664 | MS.gene019484:CDS | 25.0% |
| !!! | GTAATATTTTTGAGATGTAG+AGG | + | chr8.1:69506711-69506730 | None:intergenic | 25.0% |
| !!! | TCAAAAAAAGTTTTGGTAGT+CGG | - | chr8.1:69506037-69506056 | MS.gene019484:intron | 25.0% |
| !!! | TTGATATGTGTCTTTTTTGA+AGG | - | chr8.1:69507572-69507591 | MS.gene019484:CDS | 25.0% |
| AAACTAGTTCGGATAAATGA+AGG | - | chr8.1:69507454-69507473 | MS.gene019484:CDS | 30.0% | |
| AATGGTTCCAACATCAATAA+CGG | + | chr8.1:69506745-69506764 | None:intergenic | 30.0% | |
| ACCAAATAATAACGATGCAA+TGG | + | chr8.1:69506420-69506439 | None:intergenic | 30.0% | |
| AGTCAACTTAGTCTATATTC+TGG | + | chr8.1:69506384-69506403 | None:intergenic | 30.0% | |
| ATGAAGTTAGAAACAAATGG+AGG | - | chr8.1:69505843-69505862 | MS.gene019484:intron | 30.0% | |
| CAAATAATAACGATGCAATG+GGG | + | chr8.1:69506418-69506437 | None:intergenic | 30.0% | |
| CACTCTAAATACTACAAATC+TGG | - | chr8.1:69506001-69506020 | MS.gene019484:intron | 30.0% | |
| CCAAATAATAACGATGCAAT+GGG | + | chr8.1:69506419-69506438 | None:intergenic | 30.0% | |
| GAATTCACAGTTGTAATTGT+AGG | - | chr8.1:69505533-69505552 | MS.gene019484:CDS | 30.0% | |
| GTCAACTTAGTCTATATTCT+GGG | + | chr8.1:69506383-69506402 | None:intergenic | 30.0% | |
| TCGATTCTCTTTATATTCGA+AGG | + | chr8.1:69507121-69507140 | None:intergenic | 30.0% | |
| TGAAGTTAGAAACAAATGGA+GGG | - | chr8.1:69505844-69505863 | MS.gene019484:intron | 30.0% | |
| TGATCGTTTAAATCTCCATT+TGG | - | chr8.1:69505667-69505686 | MS.gene019484:CDS | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | + | chr8.1:69505760-69505779 | None:intergenic | 30.0% | |
| TGTTTGTAATTGTGACCAAA+TGG | - | chr8.1:69506986-69507005 | MS.gene019484:intron | 30.0% | |
| ! | AGTAAAAAGTGCATGTCAAT+TGG | + | chr8.1:69506358-69506377 | None:intergenic | 30.0% |
| ! | ATAACCTTCACTATTTTCAC+CGG | + | chr8.1:69505936-69505955 | None:intergenic | 30.0% |
| ! | CATGTTTAAAGTAACTCATC+AGG | + | chr8.1:69506226-69506245 | None:intergenic | 30.0% |
| ! | GGATACATACATTACTCTTT+TGG | - | chr8.1:69506629-69506648 | MS.gene019484:CDS | 30.0% |
| !! | CAAAAAAAGTTTTGGTAGTC+GGG | - | chr8.1:69506038-69506057 | MS.gene019484:intron | 30.0% |
| AAAATGCTTTCCCAAAGCAT+TGG | - | chr8.1:69507631-69507650 | MS.gene019484:CDS | 35.0% | |
| AAGATTGTTGTGCTTCTCTT+TGG | - | chr8.1:69505630-69505649 | MS.gene019484:CDS | 35.0% | |
| CAAGTGGATGTGCAAAAAAT+GGG | + | chr8.1:69506200-69506219 | None:intergenic | 35.0% | |
| CCCATTGCATCGTTATTATT+TGG | - | chr8.1:69506416-69506435 | MS.gene019484:intron | 35.0% | |
| GTTATTGATGTTGGAACCAT+TGG | - | chr8.1:69506744-69506763 | MS.gene019484:intron | 35.0% | |
| TATGTATCCACAACATGAAC+CGG | + | chr8.1:69506618-69506637 | None:intergenic | 35.0% | |
| TCAAGTGGATGTGCAAAAAA+TGG | + | chr8.1:69506201-69506220 | None:intergenic | 35.0% | |
| TGCTTATGACCTCCATAATT+GGG | - | chr8.1:69506084-69506103 | MS.gene019484:CDS | 35.0% | |
| TTAGACAAGCTGAAATTGCT+AGG | + | chr8.1:69505574-69505593 | None:intergenic | 35.0% | |
| TTATATTCGAAGGAACAACC+TGG | + | chr8.1:69507111-69507130 | None:intergenic | 35.0% | |
| TTCGAGTATGATATGAGAGA+TGG | + | chr8.1:69505606-69505625 | None:intergenic | 35.0% | |
| TTGCTTATGACCTCCATAAT+TGG | - | chr8.1:69506083-69506102 | MS.gene019484:CDS | 35.0% | |
| ! | ACAAAAGCATAGCTAATGGA+TGG | - | chr8.1:69507209-69507228 | MS.gene019484:CDS | 35.0% |
| ! | ATTAGCTATGCTTTTGTAGC+CGG | + | chr8.1:69507206-69507225 | None:intergenic | 35.0% |
| !! | GTATTGAAGGAATTGGTCTT+TGG | + | chr8.1:69505753-69505772 | None:intergenic | 35.0% |
| !!! | TGCTTTGGGAAAGCATTTTT+CGG | + | chr8.1:69507630-69507649 | None:intergenic | 35.0% |
| AACCATTGGAAAGATCAAGG+AGG | - | chr8.1:69506758-69506777 | MS.gene019484:intron | 40.0% | |
| AACTATCTTGTGATTGCCTC+CGG | - | chr8.1:69505914-69505933 | MS.gene019484:intron | 40.0% | |
| AAGTCTGCCGTTATTGATGT+TGG | - | chr8.1:69506735-69506754 | MS.gene019484:intron | 40.0% | |
| ACAGTTGTAATTGTAGGTGC+TGG | - | chr8.1:69505539-69505558 | MS.gene019484:CDS | 40.0% | |
| ACCATTGGAAAGATCAAGGA+GGG | - | chr8.1:69506759-69506778 | MS.gene019484:intron | 40.0% | |
| ACTAGGGAAATGATTCACCA+AGG | - | chr8.1:69506570-69506589 | MS.gene019484:CDS | 40.0% | |
| AGAACAAAAGTTTACGTGGG+AGG | + | chr8.1:69507492-69507511 | None:intergenic | 40.0% | |
| AGATGTAGAGGTCCTTCTTT+GGG | + | chr8.1:69506699-69506718 | None:intergenic | 40.0% | |
| AGCAAAACTCACTAGCCAAA+TGG | + | chr8.1:69505685-69505704 | None:intergenic | 40.0% | |
| CTAGGGAAATGATTCACCAA+GGG | - | chr8.1:69506571-69506590 | MS.gene019484:CDS | 40.0% | |
| GAACACACAAGATGACACAT+TGG | - | chr8.1:69505877-69505896 | MS.gene019484:intron | 40.0% | |
| GACTTCGAATGACAATGGAA+GGG | + | chr8.1:69506117-69506136 | None:intergenic | 40.0% | |
| GCTTATGACCTCCATAATTG+GGG | - | chr8.1:69506085-69506104 | MS.gene019484:CDS | 40.0% | |
| GGAATTTATCGTCCCAAAGA+AGG | - | chr8.1:69506684-69506703 | MS.gene019484:CDS | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | - | chr8.1:69505950-69505969 | MS.gene019484:intron | 40.0% | |
| TACGGTGATCTGTCTGAATA+TGG | - | chr8.1:69506663-69506682 | MS.gene019484:CDS | 40.0% | |
| TGGAACCATTGGAAAGATCA+AGG | - | chr8.1:69506755-69506774 | MS.gene019484:intron | 40.0% | |
| TGGTCTTTGGATAGGTATGT+TGG | + | chr8.1:69505740-69505759 | None:intergenic | 40.0% | |
| TTCCATTGTCATTCGAAGTC+CGG | - | chr8.1:69506117-69506136 | MS.gene019484:CDS | 40.0% | |
| TTTGGATAGGTATGTTGGTC+CGG | + | chr8.1:69505735-69505754 | None:intergenic | 40.0% | |
| ! | GATCATGGATTGTATTGTGC+AGG | - | chr8.1:69507660-69507679 | MS.gene019484:CDS | 40.0% |
| ! | GGCTACAAAAGCATAGCTAA+TGG | - | chr8.1:69507205-69507224 | MS.gene019484:CDS | 40.0% |
| !! | GAAGGAATTGGTCTTTGGAT+AGG | + | chr8.1:69505748-69505767 | None:intergenic | 40.0% |
| !!! | ATTTTGGGTTTGGATGTACC+AGG | - | chr8.1:69507090-69507109 | MS.gene019484:intron | 40.0% |
| !!! | GATGCGATTGTTTTTGCTAC+CGG | - | chr8.1:69507184-69507203 | MS.gene019484:CDS | 40.0% |
| AAAACCTCGCTATTGTCGCA+TGG | - | chr8.1:69505802-69505821 | MS.gene019484:intron | 45.0% | |
| ACTTGCAAGGAGAGGCTTAT+GGG | - | chr8.1:69507683-69507702 | MS.gene019484:CDS | 45.0% | |
| ATTCCTAATGTGCCTGGACT+AGG | - | chr8.1:69505956-69505975 | MS.gene019484:intron | 45.0% | |
| CCTTCAAAGTTTCCTAGTCC+AGG | + | chr8.1:69505971-69505990 | None:intergenic | 45.0% | |
| CTAGTGAAGACATGCAGCTA+CGG | + | chr8.1:69506555-69506574 | None:intergenic | 45.0% | |
| GAGATGTAGAGGTCCTTCTT+TGG | + | chr8.1:69506700-69506719 | None:intergenic | 45.0% | |
| GATCAAGGAGGGAGCTATAA+AGG | - | chr8.1:69506770-69506789 | MS.gene019484:intron | 45.0% | |
| GGACTTCGAATGACAATGGA+AGG | + | chr8.1:69506118-69506137 | None:intergenic | 45.0% | |
| GTAACTCATCAGGTGTCAAG+TGG | + | chr8.1:69506216-69506235 | None:intergenic | 45.0% | |
| GTAGCTGCATGTCTTCACTA+GGG | - | chr8.1:69506554-69506573 | MS.gene019484:CDS | 45.0% | |
| TACCGGACTTCGAATGACAA+TGG | + | chr8.1:69506122-69506141 | None:intergenic | 45.0% | |
| TCCCTCCTTGATCTTTCCAA+TGG | + | chr8.1:69506763-69506782 | None:intergenic | 45.0% | |
| TGTATTGTGCAGGACTTGCA+AGG | - | chr8.1:69507670-69507689 | MS.gene019484:CDS | 45.0% | |
| TTTCCTAGTCCAGGCACATT+AGG | + | chr8.1:69505962-69505981 | None:intergenic | 45.0% | |
| ! | ACCTTCACTATTTTCACCGG+AGG | + | chr8.1:69505933-69505952 | None:intergenic | 45.0% |
| ! | CATAGCTAATGGATGGCTCA+AGG | - | chr8.1:69507216-69507235 | MS.gene019484:CDS | 45.0% |
| ! | CCTGGACTAGGAAACTTTGA+AGG | - | chr8.1:69505968-69505987 | MS.gene019484:intron | 45.0% |
| !! | AAAGTTTTGGTAGTCGGGTG+TGG | - | chr8.1:69506043-69506062 | MS.gene019484:intron | 45.0% |
| !! | CTTTCCCAAAGCATTGGAAG+GGG | - | chr8.1:69507637-69507656 | MS.gene019484:CDS | 45.0% |
| !! | GCTTTCCCAAAGCATTGGAA+GGG | - | chr8.1:69507636-69507655 | MS.gene019484:CDS | 45.0% |
| !! | GTATTTGCCGGTTCATGTTG+TGG | - | chr8.1:69506608-69506627 | MS.gene019484:CDS | 45.0% |
| !! | TGCTTTCCCAAAGCATTGGA+AGG | - | chr8.1:69507635-69507654 | MS.gene019484:CDS | 45.0% |
| !! | TTTCCCAAAGCATTGGAAGG+GGG | - | chr8.1:69507638-69507657 | MS.gene019484:CDS | 45.0% |
| AGGCTTATGGGGAGTCAAAG+TGG | - | chr8.1:69507695-69507714 | MS.gene019484:CDS | 50.0% | |
| CGTAGCTGCATGTCTTCACT+AGG | - | chr8.1:69506553-69506572 | MS.gene019484:CDS | 50.0% | |
| CTTGCAAGGAGAGGCTTATG+GGG | - | chr8.1:69507684-69507703 | MS.gene019484:CDS | 50.0% | |
| GACTTGCAAGGAGAGGCTTA+TGG | - | chr8.1:69507682-69507701 | MS.gene019484:CDS | 50.0% | |
| GATAGGTATGTTGGTCCGGA+GGG | + | chr8.1:69505731-69505750 | None:intergenic | 50.0% | |
| GATCCCCCTTCCAATGCTTT+GGG | + | chr8.1:69507644-69507663 | None:intergenic | 50.0% | |
| GCCTCCGGTGAAAATAGTGA+AGG | - | chr8.1:69505929-69505948 | MS.gene019484:intron | 50.0% | |
| GCTGAAATTGCTAGGCCAGA+AGG | + | chr8.1:69505566-69505585 | None:intergenic | 50.0% | |
| TGATCCCCCTTCCAATGCTT+TGG | + | chr8.1:69507645-69507664 | None:intergenic | 50.0% | |
| ! | AAGGGCTAGCACCCCAATTA+TGG | + | chr8.1:69506099-69506118 | None:intergenic | 50.0% |
| ! | GCGCATGGTGAAGTATTTGC+CGG | - | chr8.1:69506596-69506615 | MS.gene019484:CDS | 50.0% |
| !! | AAGCATTGGAAGGGGGATCA+TGG | - | chr8.1:69507645-69507664 | MS.gene019484:CDS | 50.0% |
| !! | ATTGTAGGTGCTGGTCCTTC+TGG | - | chr8.1:69505548-69505567 | MS.gene019484:CDS | 50.0% |
| ACCTCGCTATTGTCGCATGG+TGG | - | chr8.1:69505805-69505824 | MS.gene019484:intron | 55.0% | |
| ACTTCACCATGCGCATCCCT+TGG | + | chr8.1:69506590-69506609 | None:intergenic | 55.0% | |
| GATTCACCAAGGGATGCGCA+TGG | - | chr8.1:69506581-69506600 | MS.gene019484:CDS | 55.0% | |
| GGATAGGTATGTTGGTCCGG+AGG | + | chr8.1:69505732-69505751 | None:intergenic | 55.0% | |
| GGCTAGCACCCCAATTATGG+AGG | + | chr8.1:69506096-69506115 | None:intergenic | 55.0% | |
| TCCACCATGCGACAATAGCG+AGG | + | chr8.1:69505809-69505828 | None:intergenic | 55.0% | |
| TGTGCAGGACTTGCAAGGAG+AGG | - | chr8.1:69507675-69507694 | MS.gene019484:CDS | 55.0% | |
| AGGTATGTTGGTCCGGAGGG+TGG | + | chr8.1:69505728-69505747 | None:intergenic | 60.0% | |
| CGGGTGTGGCAACTCAGGAA+TGG | - | chr8.1:69506057-69506076 | MS.gene019484:intron | 60.0% | |
| GGTATGTTGGTCCGGAGGGT+GGG | + | chr8.1:69505727-69505746 | None:intergenic | 60.0% | |
| GTAGTCGGGTGTGGCAACTC+AGG | - | chr8.1:69506052-69506071 | MS.gene019484:intron | 60.0% | |
| CTCATGCCTCACCCACCCTC+CGG | - | chr8.1:69505713-69505732 | MS.gene019484:intron | 65.0% | |
| GAGGGTGGGTGAGGCATGAG+GGG | + | chr8.1:69505713-69505732 | None:intergenic | 65.0% | |
| GGAGGGTGGGTGAGGCATGA+GGG | + | chr8.1:69505714-69505733 | None:intergenic | 65.0% | |
| CGGAGGGTGGGTGAGGCATG+AGG | + | chr8.1:69505715-69505734 | None:intergenic | 70.0% | |
| GTTGGTCCGGAGGGTGGGTG+AGG | + | chr8.1:69505722-69505741 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 69505527 | 69507770 | 69505527 | ID=MS.gene019484 |
| chr8.1 | mRNA | 69505527 | 69507770 | 69505527 | ID=MS.gene019484.t1;Parent=MS.gene019484 |
| chr8.1 | exon | 69507159 | 69507770 | 69507159 | ID=MS.gene019484.t1.exon1;Parent=MS.gene019484.t1 |
| chr8.1 | CDS | 69507159 | 69507770 | 69507159 | ID=cds.MS.gene019484.t1;Parent=MS.gene019484.t1 |
| chr8.1 | exon | 69506506 | 69506739 | 69506506 | ID=MS.gene019484.t1.exon2;Parent=MS.gene019484.t1 |
| chr8.1 | CDS | 69506506 | 69506739 | 69506506 | ID=cds.MS.gene019484.t1;Parent=MS.gene019484.t1 |
| chr8.1 | exon | 69506060 | 69506185 | 69506060 | ID=MS.gene019484.t1.exon3;Parent=MS.gene019484.t1 |
| chr8.1 | CDS | 69506060 | 69506185 | 69506060 | ID=cds.MS.gene019484.t1;Parent=MS.gene019484.t1 |
| chr8.1 | exon | 69505527 | 69505703 | 69505527 | ID=MS.gene019484.t1.exon4;Parent=MS.gene019484.t1 |
| chr8.1 | CDS | 69505527 | 69505703 | 69505527 | ID=cds.MS.gene019484.t1;Parent=MS.gene019484.t1 |
| Gene Sequence |
| Protein sequence |
