AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027681


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027681.t1 MTR_5g033260 91.623 382 32 0 1 382 1 382 0.0 726
MS.gene027681.t1 MTR_8g432640 83.770 382 62 0 1 382 1 382 0.0 667
MS.gene027681.t1 MTR_3g088925 52.116 378 179 2 3 379 4 380 2.11e-139 402
MS.gene027681.t1 MTR_3g088945 51.587 378 181 2 3 379 4 380 7.18e-138 399
MS.gene027681.t1 MTR_3g088955 51.323 378 182 2 3 379 4 380 5.87e-137 396
MS.gene027681.t1 MTR_7g107690 49.598 373 188 0 2 374 4 376 1.47e-136 395
MS.gene027681.t1 MTR_4g051642 51.852 378 179 3 3 379 4 379 8.44e-134 389
MS.gene027681.t1 MTR_7g107710 50.400 375 184 2 1 374 1 374 1.01e-132 385
MS.gene027681.t1 MTR_3g109520 46.381 373 194 2 7 374 40 411 9.58e-121 356
MS.gene027681.t1 MTR_1g069275 47.244 381 185 6 7 378 26 399 1.85e-117 348
MS.gene027681.t1 MTR_6g086870 45.669 381 196 4 7 378 21 399 7.09e-117 346
MS.gene027681.t1 MTR_1g008380 44.297 377 203 3 7 378 43 417 1.78e-116 345
MS.gene027681.t1 MTR_7g099330 46.154 377 191 4 7 378 25 394 1.80e-116 345
MS.gene027681.t1 MTR_1g046230 45.573 384 198 6 7 382 25 405 8.10e-116 343
MS.gene027681.t1 MTR_1g011630 44.562 377 198 5 7 378 17 387 1.91e-114 339
MS.gene027681.t1 MTR_3g096030 74.725 182 22 1 1 182 1 158 1.90e-90 269
MS.gene027681.t1 MTR_7g099160 44.118 306 159 4 78 378 217 515 6.75e-83 263
MS.gene027681.t1 MTR_3g096020 54.867 113 13 3 212 323 1 76 3.49e-24 104
MS.gene027681.t1 MTR_2g450310 24.802 379 214 13 3 316 2 374 5.82e-15 76.6
MS.gene027681.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 5.22e-13 68.9
MS.gene027681.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 8.95e-13 68.9
MS.gene027681.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 1.30e-12 69.3
MS.gene027681.t1 MTR_8g037880 23.874 222 142 5 6 202 4 223 1.81e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027681.t1 AT1G48910 56.720 372 161 0 3 374 2 373 5.30e-157 447
MS.gene027681.t1 AT1G21430 50.938 373 178 4 6 376 9 378 6.92e-131 381
MS.gene027681.t1 AT1G04610 47.606 376 187 4 7 374 38 411 1.60e-122 361
MS.gene027681.t1 AT5G11320 46.419 377 189 4 7 378 18 386 4.06e-119 352
MS.gene027681.t1 AT5G25620 46.053 380 195 5 7 379 33 409 7.22e-118 348
MS.gene027681.t1 AT5G25620 46.174 379 194 5 7 378 33 408 1.02e-117 349
MS.gene027681.t1 AT5G43890 45.263 380 199 5 7 379 26 403 1.23e-116 346
MS.gene027681.t1 AT1G04180 45.119 379 198 5 7 379 26 400 1.51e-116 345
MS.gene027681.t1 AT4G32540 44.709 378 196 5 7 378 22 392 3.50e-115 342
MS.gene027681.t1 AT4G32540 44.855 379 196 5 7 378 22 394 6.57e-115 341
MS.gene027681.t1 AT4G28720 44.531 384 203 6 7 382 26 407 7.27e-115 341
MS.gene027681.t1 AT4G13260 44.591 379 204 2 7 380 29 406 3.21e-113 337
MS.gene027681.t1 AT2G33230 44.737 380 199 5 7 378 33 409 4.40e-110 329
MS.gene027681.t1 AT5G11320 46.440 323 161 3 7 324 18 333 9.88e-100 300
MS.gene027681.t1 AT4G13260 47.163 282 144 1 7 283 29 310 1.53e-89 273
MS.gene027681.t1 AT4G13260 41.216 296 168 2 90 380 9 303 6.28e-74 233
MS.gene027681.t1 AT1G62560 25.000 228 138 6 6 203 13 237 1.80e-13 71.6
MS.gene027681.t1 AT1G62560 25.000 228 138 6 6 203 13 237 2.64e-13 71.6
MS.gene027681.t1 AT1G65860 22.566 226 145 6 6 203 13 236 6.20e-11 64.3
MS.gene027681.t1 AT1G12140 26.036 169 112 5 45 203 72 237 9.11e-11 63.5
MS.gene027681.t1 AT1G12140 26.036 169 112 5 45 203 72 237 9.11e-11 63.5

Find 96 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGATTTATCGTCCCAAAT+TGG 0.218572 5.2:+23615542 MS.gene027681:CDS
GTATTGAAGGAATTGGTATT+TGG 0.229329 5.2:-23613713 None:intergenic
AATTATGAAAATTAAAAGTT+TGG 0.248270 5.2:-23616375 None:intergenic
GGATGCTATCATTACTTTAT+CGG 0.293233 5.2:+23615488 MS.gene027681:CDS
ATTGTAGGTGCCGGTCCTTC+TGG 0.299294 5.2:+23613511 MS.gene027681:CDS
AGGTAGGTTGGGCCTGAGGG+TGG 0.310193 5.2:-23613688 None:intergenic
ATATGAATCAAAAGAGGTTT+TGG 0.328118 5.2:+23613993 MS.gene027681:CDS
CTGAGGGTGGGTGAGGCATG+AGG 0.329207 5.2:-23613675 None:intergenic
GAGTTGTAAAGGTCCCAATT+TGG 0.331158 5.2:-23615556 None:intergenic
GGACTTCGAACGACAATAGA+TGG 0.338818 5.2:-23614078 None:intergenic
TTATCGGCAAAACTAAAATA+TGG 0.345197 5.2:+23615504 MS.gene027681:CDS
GAACACTATAGAAGGGATAT+TGG 0.347771 5.2:+23613840 MS.gene027681:CDS
AGGCTTGTGGGGAGTCAAAA+TGG 0.349213 5.2:+23616324 MS.gene027681:CDS
TGTCTATGTATTGAAGGAAT+TGG 0.353488 5.2:-23613720 None:intergenic
AGTTGTAAAGGTCCCAATTT+GGG 0.358601 5.2:-23615555 None:intergenic
TGGAACTGTCGAAAAGATTA+AGG 0.360924 5.2:+23615614 MS.gene027681:CDS
GAAACAAAGAACACTATAGA+AGG 0.371049 5.2:+23613832 MS.gene027681:CDS
CACTCTAAATATTACAAATC+TGG 0.373703 5.2:+23613964 MS.gene027681:CDS
TTATTCAGTCCAGGCACATT+AGG 0.380732 5.2:-23613922 None:intergenic
GTTGGGCCTGAGGGTGGGTG+AGG 0.384881 5.2:-23613682 None:intergenic
ATCTATTGTCGTTCGAAGTC+CGG 0.385488 5.2:+23614080 MS.gene027681:CDS
GGCTACAAAAGCATAACTAA+TGG 0.402615 5.2:+23615998 MS.gene027681:CDS
GATTAAGGAGGGATCTATAA+AGG 0.408201 5.2:+23615629 MS.gene027681:CDS
CATAACTAATGGATGGCTTA+AGG 0.409785 5.2:+23616009 MS.gene027681:CDS
GGGATTTATCGTCCCAAATT+GGG 0.412423 5.2:+23615543 MS.gene027681:CDS
CATATTTGTCTATGTATTGA+AGG 0.420134 5.2:-23613726 None:intergenic
GGGACGATAAATCCCGTACT+TGG 0.427951 5.2:-23615535 None:intergenic
GAATCCACGGTTGTAATTGT+AGG 0.441201 5.2:+23613496 MS.gene027681:CDS
CTCATGCCTCACCCACCCTC+AGG 0.443220 5.2:+23613676 MS.gene027681:CDS
AAATATGCTCTTAATGAGAA+AGG 0.450742 5.2:+23616229 MS.gene027681:CDS
GTCAGATTCTTGAGTTGTAA+AGG 0.452965 5.2:-23615567 None:intergenic
ATAGCATCCACAATAGCAAC+TGG 0.454424 5.2:-23615474 None:intergenic
GCTTATGATCTCTATAACTC+GGG 0.459427 5.2:+23614048 MS.gene027681:CDS
GGTATTTGGATAGGTAGGTT+GGG 0.467624 5.2:-23613699 None:intergenic
TATGGTGATTTGTCCAAGTA+CGG 0.467911 5.2:+23615522 MS.gene027681:CDS
GGATAGGTAGGTTGGGCCTG+AGG 0.468970 5.2:-23613692 None:intergenic
AATATGCTCTTAATGAGAAA+GGG 0.471517 5.2:+23616230 MS.gene027681:CDS
AGGGATATTGGAAGTTTATG+AGG 0.472958 5.2:+23613852 MS.gene027681:CDS
TGAGGGTGGGTGAGGCATGA+GGG 0.473573 5.2:-23613674 None:intergenic
ACTGTCAAGGAGAGGCTTGT+GGG 0.478876 5.2:+23616312 MS.gene027681:CDS
AAGTTTCTTGTGATCGCCAC+TGG 0.479220 5.2:+23613877 MS.gene027681:CDS
ATTTCACCATTCGCATCCCT+TGG 0.479361 5.2:-23615446 None:intergenic
GAATTGGTATTTGGATAGGT+AGG 0.480246 5.2:-23613704 None:intergenic
GGTTATATTCCTAATGTGCC+TGG 0.488785 5.2:+23613913 MS.gene027681:CDS
GATAGGTAGGTTGGGCCTGA+GGG 0.490086 5.2:-23613691 None:intergenic
GAAGGAATTGGTATTTGGAT+AGG 0.493929 5.2:-23613708 None:intergenic
GGTAGGTTGGGCCTGAGGGT+GGG 0.501182 5.2:-23613687 None:intergenic
AAGTCTGCGGTTATTGATGT+TGG 0.503142 5.2:+23615594 MS.gene027681:CDS
ATGATGAGGTTAGAAACAAA+TGG 0.503942 5.2:+23613803 MS.gene027681:CDS
TGGTATTTGGATAGGTAGGT+TGG 0.507880 5.2:-23613700 None:intergenic
AAAATGCTTACCCGAACCAT+TGG 0.508101 5.2:+23616260 MS.gene027681:CDS
AATTGCTAGGCCAGAAGGAC+CGG 0.508395 5.2:-23613521 None:intergenic
CCTTCAAAGTTATTCAGTCC+AGG 0.511343 5.2:-23613931 None:intergenic
GATCATGGATTGTACTGTGC+AGG 0.519262 5.2:+23616289 MS.gene027681:CDS
CCTGGACTGAATAACTTTGA+AGG 0.524426 5.2:+23613931 MS.gene027681:CDS
TTCAAAATATGAATCAAAAG+AGG 0.525909 5.2:+23613987 MS.gene027681:CDS
TGCTTATGATCTCTATAACT+CGG 0.526560 5.2:+23614047 MS.gene027681:CDS
ATGGTGATTTGTCCAAGTAC+GGG 0.532353 5.2:+23615523 MS.gene027681:CDS
GACTGTCAAGGAGAGGCTTG+TGG 0.533040 5.2:+23616311 MS.gene027681:CDS
GTAGTTGGGTGTGGTAACTC+AGG 0.547445 5.2:+23614015 MS.gene027681:CDS
GAGGGTGGGTGAGGCATGAG+GGG 0.557145 5.2:-23613673 None:intergenic
TCAATGCTAGTGATATATGA+AGG 0.561811 5.2:-23615911 None:intergenic
TTACAACTCAAGAATCTGAC+AGG 0.563342 5.2:+23615570 MS.gene027681:CDS
GCAGAAATTGCTAGGCCAGA+AGG 0.563796 5.2:-23613526 None:intergenic
ACAAAAGCATAACTAATGGA+TGG 0.570034 5.2:+23616002 MS.gene027681:CDS
TTAGGCAAGCAGAAATTGCT+AGG 0.575098 5.2:-23613534 None:intergenic
TGCTTACCCGAACCATTGGA+AGG 0.577260 5.2:+23616264 MS.gene027681:CDS
ACGGTTGTAATTGTAGGTGC+CGG 0.579524 5.2:+23613502 MS.gene027681:CDS
ATGAGGTTAGAAACAAATGG+AGG 0.583201 5.2:+23613806 MS.gene027681:CDS
CTGTCAAGGAGAGGCTTGTG+GGG 0.591890 5.2:+23616313 MS.gene027681:CDS
TGGGTGTGGTAACTCAGGAA+TGG 0.594724 5.2:+23614020 MS.gene027681:CDS
CTTACCCGAACCATTGGAAG+GGG 0.603003 5.2:+23616266 MS.gene027681:CDS
CAACAATATGCAAGAATCCA+CGG 0.609354 5.2:+23613483 None:intergenic
AAACAAAGAACACTATAGAA+GGG 0.614313 5.2:+23613833 MS.gene027681:CDS
GCTTACCCGAACCATTGGAA+GGG 0.616793 5.2:+23616265 MS.gene027681:CDS
TGTACTGTGCAGGACTGTCA+AGG 0.617174 5.2:+23616299 MS.gene027681:CDS
AACTGTCGAAAAGATTAAGG+AGG 0.618608 5.2:+23615617 MS.gene027681:CDS
GTAGAGAAATGATTCACCAA+GGG 0.627830 5.2:+23615430 MS.gene027681:CDS
ACTGAATAACTTTGAAGGAG+AGG 0.632240 5.2:+23613936 MS.gene027681:CDS
ACTGTCGAAAAGATTAAGGA+GGG 0.634444 5.2:+23615618 MS.gene027681:CDS
GCCACTGGTGAAAATAGTGA+AGG 0.638559 5.2:+23613892 MS.gene027681:CDS
AGCAAAACTCACTAGCCAAG+TGG 0.645422 5.2:-23613645 None:intergenic
TGAGGTTAGAAACAAATGGA+GGG 0.645489 5.2:+23613807 MS.gene027681:CDS
GAATAACTTTGAAGGAGAGG+TGG 0.646286 5.2:+23613939 MS.gene027681:CDS
TGAGTCTGCTAAGTATGATG+AGG 0.653647 5.2:+23613789 MS.gene027681:CDS
GGCACCTACAATTACAACCG+TGG 0.654130 5.2:-23613500 None:intergenic
TGATCGTCTAAACCTCCACT+TGG 0.657123 5.2:+23613630 MS.gene027681:CDS
GGATGCAGAGTCAATTGCTG+AGG 0.658304 5.2:+23616345 MS.gene027681:CDS
GACTTCGAACGACAATAGAT+GGG 0.661642 5.2:-23614077 None:intergenic
GATTCACCAAGGGATGCGAA+TGG 0.671019 5.2:+23615440 MS.gene027681:CDS
AGTAGAGAAATGATTCACCA+AGG 0.673155 5.2:+23615429 MS.gene027681:CDS
AAAACTCACTAGCCAAGTGG+AGG 0.678012 5.2:-23613642 None:intergenic
TGTGCAGGACTGTCAAGGAG+AGG 0.680971 5.2:+23616304 MS.gene027681:CDS
TCAACTGTGCGACAATAGTG+AGG 0.686001 5.2:-23613769 None:intergenic
GAATCTGACAGGAAAGTCTG+CGG 0.715867 5.2:+23615581 MS.gene027681:CDS
TTACCCGAACCATTGGAAGG+GGG 0.721390 5.2:+23616267 MS.gene027681:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGTAAATTATCTATAA+AGG - chr5.2:23615720-23615739 None:intergenic 10.0%
!! AATTATGAAAATTAAAAGTT+TGG - chr5.2:23616378-23616397 None:intergenic 10.0%
!! CAATATAAAAAAAAAATGTA+TGG + chr5.2:23615338-23615357 MS.gene027681:intron 10.0%
!!! ATCAATATTATACAATATTT+TGG + chr5.2:23614425-23614444 MS.gene027681:intron 10.0%
!!! TTTTTTTTTTTTAACAATGT+TGG + chr5.2:23615208-23615227 MS.gene027681:intron 10.0%
!! AATTTAAATTTGTATACCTA+AGG + chr5.2:23614158-23614177 MS.gene027681:intron 15.0%
!! CATAATCATAATTAAGATAA+AGG + chr5.2:23616046-23616065 MS.gene027681:intron 15.0%
!! TTATAATATGTTCAAAACTA+TGG + chr5.2:23615831-23615850 MS.gene027681:intron 15.0%
!!! AAATTTTTATATGTATCCTT+AGG - chr5.2:23614177-23614196 None:intergenic 15.0%
!!! TTATTTGATGTATTTTTCAA+AGG + chr5.2:23616201-23616220 MS.gene027681:intron 15.0%
!! AATAACTTGAAGAATTAGAA+AGG - chr5.2:23616170-23616189 None:intergenic 20.0%
!! AATGTAAGTTGTATATTGTA+AGG - chr5.2:23616094-23616113 None:intergenic 20.0%
!! ATAACTTGAAGAATTAGAAA+GGG - chr5.2:23616169-23616188 None:intergenic 20.0%
!! ATACATACATACATACATAT+AGG - chr5.2:23615070-23615089 None:intergenic 20.0%
!! ATATATTGAAAAAGAATAGC+TGG - chr5.2:23614349-23614368 None:intergenic 20.0%
!! ATATGATCATCATAAAAACA+GGG + chr5.2:23615166-23615185 MS.gene027681:intron 20.0%
!! ATGTAAGTTGTATATTGTAA+GGG - chr5.2:23616093-23616112 None:intergenic 20.0%
!! GAGTTAGAAATATTATTTAC+CGG - chr5.2:23614102-23614121 None:intergenic 20.0%
!! TACATACATACATACATATA+GGG - chr5.2:23615069-23615088 None:intergenic 20.0%
!! TATATGATCATCATAAAAAC+AGG + chr5.2:23615165-23615184 MS.gene027681:intron 20.0%
!! TTCAAAATATGAATCAAAAG+AGG + chr5.2:23613987-23614006 MS.gene027681:CDS 20.0%
!!! GGAAGTAAGAATAATTTTTT+TGG + chr5.2:23614509-23614528 MS.gene027681:intron 20.0%
!!! TTTTGTGTGCTTTTTTTTAT+TGG + chr5.2:23616128-23616147 MS.gene027681:intron 20.0%
! AAACAAAGAACACTATAGAA+GGG + chr5.2:23613833-23613852 MS.gene027681:CDS 25.0%
! AAATATGCTCTTAATGAGAA+AGG + chr5.2:23616229-23616248 MS.gene027681:CDS 25.0%
! AAGTAGTTAAATACACCTTA+AGG - chr5.2:23614838-23614857 None:intergenic 25.0%
! AAGTTGTTAAATACACCTTA+AGG - chr5.2:23614985-23615004 None:intergenic 25.0%
! AATATGCTCTTAATGAGAAA+GGG + chr5.2:23616230-23616249 MS.gene027681:CDS 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr5.2:23615028-23615047 MS.gene027681:intron 25.0%
! CACTCTAAATATTACAAATC+TGG + chr5.2:23613964-23613983 MS.gene027681:CDS 25.0%
! CATATTTGTCTATGTATTGA+AGG - chr5.2:23613729-23613748 None:intergenic 25.0%
! GAGAAAAAGAAAGTTGTATT+TGG + chr5.2:23615932-23615951 MS.gene027681:CDS 25.0%
! TTATCGGCAAAACTAAAATA+TGG + chr5.2:23615504-23615523 MS.gene027681:CDS 25.0%
!! ACACCTTCTAAAAAAATAAG+TGG - chr5.2:23614946-23614965 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr5.2:23614880-23614899 MS.gene027681:intron 25.0%
!! ATATGAATCAAAAGAGGTTT+TGG + chr5.2:23613993-23614012 MS.gene027681:CDS 25.0%
!! ATCTGAGATTGAATTATTAG+TGG + chr5.2:23614466-23614485 MS.gene027681:intron 25.0%
!! CACCTTCTAAAAAAATAAGT+GGG - chr5.2:23614945-23614964 None:intergenic 25.0%
!! TAAAGACAATATGTGTTTTG+TGG + chr5.2:23615367-23615386 MS.gene027681:intron 25.0%
!! TCTGAGATTGAATTATTAGT+GGG + chr5.2:23614467-23614486 MS.gene027681:intron 25.0%
!!! GGGCTATTTTTTTTTTTTGA+AGG + chr5.2:23614488-23614507 MS.gene027681:intron 25.0%
ATGATGAGGTTAGAAACAAA+TGG + chr5.2:23613803-23613822 MS.gene027681:CDS 30.0%
ATGTCACACACTTACTTTAA+TGG - chr5.2:23615862-23615881 None:intergenic 30.0%
CACACCTTAATAAAAACTAG+TGG + chr5.2:23615027-23615046 MS.gene027681:intron 30.0%
CTGAGATTGAATTATTAGTG+GGG + chr5.2:23614468-23614487 MS.gene027681:intron 30.0%
GAAACAAAGAACACTATAGA+AGG + chr5.2:23613832-23613851 MS.gene027681:CDS 30.0%
GGATGCTATCATTACTTTAT+CGG + chr5.2:23615488-23615507 MS.gene027681:CDS 30.0%
GTATTGAAGGAATTGGTATT+TGG - chr5.2:23613716-23613735 None:intergenic 30.0%
TCAATGCTAGTGATATATGA+AGG - chr5.2:23615914-23615933 None:intergenic 30.0%
TGCTTATGATCTCTATAACT+CGG + chr5.2:23614047-23614066 MS.gene027681:CDS 30.0%
TGTCTATGTATTGAAGGAAT+TGG - chr5.2:23613723-23613742 None:intergenic 30.0%
TTATAGATGTCCAACTAGAT+AGG - chr5.2:23614395-23614414 None:intergenic 30.0%
! ACAAAAGCATAACTAATGGA+TGG + chr5.2:23616002-23616021 MS.gene027681:CDS 30.0%
! ATGATTTTTGTGCTTCTCTT+TGG + chr5.2:23613593-23613612 MS.gene027681:CDS 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr5.2:23614879-23614898 MS.gene027681:intron 30.0%
! TTTTAGCAACATTCACCTTA+AGG + chr5.2:23614967-23614986 MS.gene027681:intron 30.0%
!! AGTGAGGTTTTATGTTGAAA+TGG - chr5.2:23613756-23613775 None:intergenic 30.0%
!! ATATTTTCCAGTTGCTATTG+TGG + chr5.2:23615467-23615486 MS.gene027681:CDS 30.0%
!!! AATATTTTGGTGTGTTAACC+AGG + chr5.2:23614438-23614457 MS.gene027681:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr5.2:23615034-23615053 None:intergenic 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr5.2:23614886-23614905 None:intergenic 30.0%
!!! ATATTTTGGTGTGTTAACCA+GGG + chr5.2:23614439-23614458 MS.gene027681:intron 30.0%
!!! CACCCACTTATTTTTTTAGA+AGG + chr5.2:23614940-23614959 MS.gene027681:intron 30.0%
!!! TTGTTTTAGACCTATCTAGT+TGG + chr5.2:23614382-23614401 MS.gene027681:intron 30.0%
AACTGTCGAAAAGATTAAGG+AGG + chr5.2:23615617-23615636 MS.gene027681:CDS 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr5.2:23614799-23614818 None:intergenic 35.0%
ACTGTCGAAAAGATTAAGGA+GGG + chr5.2:23615618-23615637 MS.gene027681:CDS 35.0%
AGGGATATTGGAAGTTTATG+AGG + chr5.2:23613852-23613871 MS.gene027681:CDS 35.0%
AGTAGAGAAATGATTCACCA+AGG + chr5.2:23615429-23615448 MS.gene027681:CDS 35.0%
AGTTGTAAAGGTCCCAATTT+GGG - chr5.2:23615558-23615577 None:intergenic 35.0%
ATGAGGTTAGAAACAAATGG+AGG + chr5.2:23613806-23613825 MS.gene027681:CDS 35.0%
ATTAATCATCTACACACACG+AGG - chr5.2:23615675-23615694 None:intergenic 35.0%
GAACACTATAGAAGGGATAT+TGG + chr5.2:23613840-23613859 MS.gene027681:CDS 35.0%
GAAGGAATTGGTATTTGGAT+AGG - chr5.2:23613711-23613730 None:intergenic 35.0%
GAATTGGTATTTGGATAGGT+AGG - chr5.2:23613707-23613726 None:intergenic 35.0%
GATTAAGGAGGGATCTATAA+AGG + chr5.2:23615629-23615648 MS.gene027681:CDS 35.0%
GCTTATGATCTCTATAACTC+GGG + chr5.2:23614048-23614067 MS.gene027681:CDS 35.0%
GTAAGTGTGTGACATAACTT+TGG + chr5.2:23615867-23615886 MS.gene027681:intron 35.0%
GTAGAGAAATGATTCACCAA+GGG + chr5.2:23615430-23615449 MS.gene027681:CDS 35.0%
GTGTGACATAACTTTGGATT+TGG + chr5.2:23615873-23615892 MS.gene027681:intron 35.0%
TGAGGTTAGAAACAAATGGA+GGG + chr5.2:23613807-23613826 MS.gene027681:CDS 35.0%
TGGAACTGTCGAAAAGATTA+AGG + chr5.2:23615614-23615633 MS.gene027681:CDS 35.0%
TGTATGTTAGCATCTCCTAT+AGG - chr5.2:23614922-23614941 None:intergenic 35.0%
TTACAACTCAAGAATCTGAC+AGG + chr5.2:23615570-23615589 MS.gene027681:CDS 35.0%
! ACTGAATAACTTTGAAGGAG+AGG + chr5.2:23613936-23613955 MS.gene027681:CDS 35.0%
! ATTTTTGTGCTTCTCTTTGG+AGG + chr5.2:23613596-23613615 MS.gene027681:CDS 35.0%
! CATAACTAATGGATGGCTTA+AGG + chr5.2:23616009-23616028 MS.gene027681:CDS 35.0%
! CATACATATAGGGATTTGCT+AGG - chr5.2:23615059-23615078 None:intergenic 35.0%
! GGCTACAAAAGCATAACTAA+TGG + chr5.2:23615998-23616017 MS.gene027681:CDS 35.0%
! GTCAGATTCTTGAGTTGTAA+AGG - chr5.2:23615570-23615589 None:intergenic 35.0%
! TATGGTGATTTGTCCAAGTA+CGG + chr5.2:23615522-23615541 MS.gene027681:CDS 35.0%
! TTTTAGCAAGCTACACCTTA+AGG + chr5.2:23614820-23614839 MS.gene027681:intron 35.0%
!! CAAAAGAGGTTTTGGTAGTT+GGG + chr5.2:23614001-23614020 MS.gene027681:CDS 35.0%
!! TCAAAAGAGGTTTTGGTAGT+TGG + chr5.2:23614000-23614019 MS.gene027681:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr5.2:23614793-23614812 MS.gene027681:intron 35.0%
!!! TATTTTGGTGTGTTAACCAG+GGG + chr5.2:23614440-23614459 MS.gene027681:intron 35.0%
AAAATGCTTACCCGAACCAT+TGG + chr5.2:23616260-23616279 MS.gene027681:CDS 40.0%
AAGTCTGCGGTTATTGATGT+TGG + chr5.2:23615594-23615613 MS.gene027681:CDS 40.0%
ACTTTGGATTTGGATGTCAC+AGG + chr5.2:23615883-23615902 MS.gene027681:intron 40.0%
ATAGCATCCACAATAGCAAC+TGG - chr5.2:23615477-23615496 None:intergenic 40.0%
ATCTATTGTCGTTCGAAGTC+CGG + chr5.2:23614080-23614099 MS.gene027681:CDS 40.0%
ATCTCCTATAGGCATTTGCT+AGG - chr5.2:23614911-23614930 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr5.2:23614800-23614819 None:intergenic 40.0%
CCTGGACTGAATAACTTTGA+AGG + chr5.2:23613931-23613950 MS.gene027681:CDS 40.0%
CCTTCAAAGTTATTCAGTCC+AGG - chr5.2:23613934-23613953 None:intergenic 40.0%
GAATCCACGGTTGTAATTGT+AGG + chr5.2:23613496-23613515 MS.gene027681:CDS 40.0%
GACTTCGAACGACAATAGAT+GGG - chr5.2:23614080-23614099 None:intergenic 40.0%
GAGTTGTAAAGGTCCCAATT+TGG - chr5.2:23615559-23615578 None:intergenic 40.0%
GGGATTTATCGTCCCAAATT+GGG + chr5.2:23615543-23615562 MS.gene027681:CDS 40.0%
GGTATTTGGATAGGTAGGTT+GGG - chr5.2:23613702-23613721 None:intergenic 40.0%
GGTTATATTCCTAATGTGCC+TGG + chr5.2:23613913-23613932 MS.gene027681:CDS 40.0%
GTATCCTAGCAAATGCCTAT+AGG + chr5.2:23614904-23614923 MS.gene027681:intron 40.0%
TGAGTCTGCTAAGTATGATG+AGG + chr5.2:23613789-23613808 MS.gene027681:CDS 40.0%
TGGTATTTGGATAGGTAGGT+TGG - chr5.2:23613703-23613722 None:intergenic 40.0%
TTAGGCAAGCAGAAATTGCT+AGG - chr5.2:23613537-23613556 None:intergenic 40.0%
TTATTCAGTCCAGGCACATT+AGG - chr5.2:23613925-23613944 None:intergenic 40.0%
! ACCTTCACTATTTTCACCAG+TGG - chr5.2:23613896-23613915 None:intergenic 40.0%
! ATGGTGATTTGTCCAAGTAC+GGG + chr5.2:23615523-23615542 MS.gene027681:CDS 40.0%
! GAATAACTTTGAAGGAGAGG+TGG + chr5.2:23613939-23613958 MS.gene027681:CDS 40.0%
!! GAGAGATGCAGTTTTGTGTT+AGG - chr5.2:23613555-23613574 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr5.2:23614792-23614811 MS.gene027681:intron 40.0%
!!! TGGTTCGGGTAAGCATTTTT+TGG - chr5.2:23616259-23616278 None:intergenic 40.0%
AAAACTCACTAGCCAAGTGG+AGG - chr5.2:23613645-23613664 None:intergenic 45.0%
AAGTTTCTTGTGATCGCCAC+TGG + chr5.2:23613877-23613896 MS.gene027681:CDS 45.0%
ACGGTTGTAATTGTAGGTGC+CGG + chr5.2:23613502-23613521 MS.gene027681:CDS 45.0%
AGCAAAACTCACTAGCCAAG+TGG - chr5.2:23613648-23613667 None:intergenic 45.0%
ATTTCACCATTCGCATCCCT+TGG - chr5.2:23615449-23615468 None:intergenic 45.0%
CGGGATTTATCGTCCCAAAT+TGG + chr5.2:23615542-23615561 MS.gene027681:CDS 45.0%
GAATCTGACAGGAAAGTCTG+CGG + chr5.2:23615581-23615600 MS.gene027681:CDS 45.0%
GCCACTGGTGAAAATAGTGA+AGG + chr5.2:23613892-23613911 MS.gene027681:CDS 45.0%
GGACTTCGAACGACAATAGA+TGG - chr5.2:23614081-23614100 None:intergenic 45.0%
TCAACTGTGCGACAATAGTG+AGG - chr5.2:23613772-23613791 None:intergenic 45.0%
TGATCGTCTAAACCTCCACT+TGG + chr5.2:23613630-23613649 MS.gene027681:CDS 45.0%
TGTATGTGTGTGTGTGTGTG+CGG - chr5.2:23614637-23614656 None:intergenic 45.0%
! GATCATGGATTGTACTGTGC+AGG + chr5.2:23616289-23616308 MS.gene027681:CDS 45.0%
! GATGTGATCGTTTTCGCAAC+TGG + chr5.2:23615977-23615996 MS.gene027681:CDS 45.0%
!! TATTCAAAAAATAATAATAA+TGG - chr5.2:23615249-23615268 None:intergenic 5.0%
!!! ATAAAAATTTATTTTTTGAA+GGG + chr5.2:23614187-23614206 MS.gene027681:intron 5.0%
!!! TATAAAAATTTATTTTTTGA+AGG + chr5.2:23614186-23614205 MS.gene027681:intron 5.0%
AACCATTGGAAGGGGGATCA+TGG + chr5.2:23616274-23616293 MS.gene027681:CDS 50.0%
AATTGCTAGGCCAGAAGGAC+CGG - chr5.2:23613524-23613543 None:intergenic 50.0%
ACTGTCAAGGAGAGGCTTGT+GGG + chr5.2:23616312-23616331 MS.gene027681:CDS 50.0%
AGGCTTGTGGGGAGTCAAAA+TGG + chr5.2:23616324-23616343 MS.gene027681:CDS 50.0%
ATCCATGATCCCCCTTCCAA+TGG - chr5.2:23616279-23616298 None:intergenic 50.0%
CTTACCCGAACCATTGGAAG+GGG + chr5.2:23616266-23616285 MS.gene027681:CDS 50.0%
GATTCACCAAGGGATGCGAA+TGG + chr5.2:23615440-23615459 MS.gene027681:CDS 50.0%
GCAGAAATTGCTAGGCCAGA+AGG - chr5.2:23613529-23613548 None:intergenic 50.0%
GCTTACCCGAACCATTGGAA+GGG + chr5.2:23616265-23616284 MS.gene027681:CDS 50.0%
GGATGCAGAGTCAATTGCTG+AGG + chr5.2:23616345-23616364 MS.gene027681:CDS 50.0%
GGCACCTACAATTACAACCG+TGG - chr5.2:23613503-23613522 None:intergenic 50.0%
GGGACGATAAATCCCGTACT+TGG - chr5.2:23615538-23615557 None:intergenic 50.0%
GTAGTTGGGTGTGGTAACTC+AGG + chr5.2:23614015-23614034 MS.gene027681:CDS 50.0%
GTATGTGTGTGTGTGTGTGC+GGG - chr5.2:23614636-23614655 None:intergenic 50.0%
TATGTGTGTGTGTGTGTGCG+GGG - chr5.2:23614635-23614654 None:intergenic 50.0%
TGATCCCCCTTCCAATGGTT+CGG - chr5.2:23616274-23616293 None:intergenic 50.0%
TGCTTACCCGAACCATTGGA+AGG + chr5.2:23616264-23616283 MS.gene027681:CDS 50.0%
TGGGTGTGGTAACTCAGGAA+TGG + chr5.2:23614020-23614039 MS.gene027681:CDS 50.0%
TGTACTGTGCAGGACTGTCA+AGG + chr5.2:23616299-23616318 MS.gene027681:CDS 50.0%
TTACCCGAACCATTGGAAGG+GGG + chr5.2:23616267-23616286 MS.gene027681:CDS 50.0%
! TTTGGTGTGTTAACCAGGGG+CGG + chr5.2:23614443-23614462 MS.gene027681:intron 50.0%
!! GAGGTTTTGGTAGTTGGGTG+TGG + chr5.2:23614006-23614025 MS.gene027681:CDS 50.0%
CTGTCAAGGAGAGGCTTGTG+GGG + chr5.2:23616313-23616332 MS.gene027681:CDS 55.0%
GACTGTCAAGGAGAGGCTTG+TGG + chr5.2:23616311-23616330 MS.gene027681:CDS 55.0%
GATCCCCCTTCCAATGGTTC+GGG - chr5.2:23616273-23616292 None:intergenic 55.0%
TGTGCAGGACTGTCAAGGAG+AGG + chr5.2:23616304-23616323 MS.gene027681:CDS 55.0%
TTCAATCTCAGATCCGCCCC+TGG - chr5.2:23614459-23614478 None:intergenic 55.0%
! GATAGGTAGGTTGGGCCTGA+GGG - chr5.2:23613694-23613713 None:intergenic 55.0%
!! ATTGTAGGTGCCGGTCCTTC+TGG + chr5.2:23613511-23613530 MS.gene027681:CDS 55.0%
TGAGGGTGGGTGAGGCATGA+GGG - chr5.2:23613677-23613696 None:intergenic 60.0%
! GGATAGGTAGGTTGGGCCTG+AGG - chr5.2:23613695-23613714 None:intergenic 60.0%
CTCATGCCTCACCCACCCTC+AGG + chr5.2:23613676-23613695 MS.gene027681:CDS 65.0%
CTGAGGGTGGGTGAGGCATG+AGG - chr5.2:23613678-23613697 None:intergenic 65.0%
GAGGGTGGGTGAGGCATGAG+GGG - chr5.2:23613676-23613695 None:intergenic 65.0%
! AGGTAGGTTGGGCCTGAGGG+TGG - chr5.2:23613691-23613710 None:intergenic 65.0%
! GGTAGGTTGGGCCTGAGGGT+GGG - chr5.2:23613690-23613709 None:intergenic 65.0%
GTTGGGCCTGAGGGTGGGTG+AGG - chr5.2:23613685-23613704 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 23613490 23616399 23613490 ID=MS.gene027681
chr5.2 mRNA 23613490 23616399 23613490 ID=MS.gene027681.t1;Parent=MS.gene027681
chr5.2 exon 23613490 23614101 23613490 ID=MS.gene027681.t1.exon1;Parent=MS.gene027681.t1
chr5.2 CDS 23613490 23614101 23613490 ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1
chr5.2 exon 23615417 23615650 23615417 ID=MS.gene027681.t1.exon2;Parent=MS.gene027681.t1
chr5.2 CDS 23615417 23615650 23615417 ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1
chr5.2 exon 23615905 23616030 23615905 ID=MS.gene027681.t1.exon3;Parent=MS.gene027681.t1
chr5.2 CDS 23615905 23616030 23615905 ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1
chr5.2 exon 23616223 23616399 23616223 ID=MS.gene027681.t1.exon4;Parent=MS.gene027681.t1
chr5.2 CDS 23616223 23616399 23616223 ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1
Gene Sequence

>MS.gene027681

ATGCAAGAATCCACGGTTGTAATTGTAGGTGCCGGTCCTTCTGGCCTAGCAATTTCTGCTTGCCTAACACAAAACTGCATCTCTCATATCATACTCGAAAAAGATGATTTTTGTGCTTCTCTTTGGAGGAAAAATGCGTATGATCGTCTAAACCTCCACTTGGCTAGTGAGTTTTGCTCTTTACCCCTCATGCCTCACCCACCCTCAGGCCCAACCTACCTATCCAAATACCAATTCCTTCAATACATAGACAAATATGTCGACCATTTCAACATAAAACCTCACTATTGTCGCACAGTTGAGTCTGCTAAGTATGATGAGGTTAGAAACAAATGGAGGGTTGAAACAAAGAACACTATAGAAGGGATATTGGAAGTTTATGAGGCGAAGTTTCTTGTGATCGCCACTGGTGAAAATAGTGAAGGTTATATTCCTAATGTGCCTGGACTGAATAACTTTGAAGGAGAGGTGGTACACTCTAAATATTACAAATCTGGTTCAAAATATGAATCAAAAGAGGTTTTGGTAGTTGGGTGTGGTAACTCAGGAATGGAGATTGCTTATGATCTCTATAACTCGGGTGCTAACCCATCTATTGTCGTTCGAAGTCCGGTAAATAATATTTCTAACTCACTCTTTTCATGCAACAATATCATTTAGAATGAAAGAATTTAAATTTGTATACCTAAGGATACATATAAAAATTTATTTTTTGAAGGGAGACAATTTATTTATTTATTTATTTAAAAATTTAATGACAGATTAATTTTATGAAATTCTCGATAAGATTTTTTTTAATCTAGCAATGTATGTATAATTTCTTGATTCAATGCGTCGATAATTCATTAATATAACTCCAGCTATTCTTTTTCAATATATTTTTTTGTTGAGATTGTTTTAGACCTATCTAGTTGGACATCTATAACTTTCGACATATCAATATTATACAATATTTTGGTGTGTTAACCAGGGGCGGATCTGAGATTGAATTATTAGTGGGGCTATTTTTTTTTTTTGAAGGAAGTAAGAATAATTTTTTTGGAGAAATAAATATTAATAGATAATGCACAACATAAGTTACAAAATCTTATCTTAGAACTCGTGCGCGTGCACGCGTACACATTCAAGCACACGCACGCGCGCCCCGCACACACACACACACATACACACATACATACACACACACACATACACACACACATACATACATACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAGATTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTGTTTTAGCAAGCTACACCTTAAGGTGTATTTAACTACTTTTTAGTTATAACTTGCTAAAACACACCTTCTAAAAAATAAGTGGGTGTATCCTAGCAAATGCCTATAGGAGATGCTAACATACACCCACTTATTTTTTTAGAAGGTGTGTTTTAGCAACATTCACCTTAAGGTGTATTTAACAACTTTTTAGTTATATCTTTGCTAAAACACACCTTAATAAAAACTAGTGGGTGTATCCTAGCAAATCCCTATATGTATGTATGTATGTATGTATGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATCATCATAAAAACAGGGATTCAGTTGACTCGATAGTTTTTTTTTTTTTAACAATGTTGGCTCGATAGTTGAACTCCATTATTATTATTTTTTGAATAAAGTTGAACTACATTCTGTTGATATTATTTTTCTTTGAAAATAAATTATGTTTTTATTATTTGTCAAATCAATATAAAAAAAAAATGTATGGATAGTGTAAAGACAATATGTGTTTTGTGGTATTAATTGTTTAATTTTTTTTTTTAGTTTCATGTCTTCAGTAGAGAAATGATTCACCAAGGGATGCGAATGGTGAAATATTTTCCAGTTGCTATTGTGGATGCTATCATTACTTTATCGGCAAAACTAAAATATGGTGATTTGTCCAAGTACGGGATTTATCGTCCCAAATTGGGACCTTTACAACTCAAGAATCTGACAGGAAAGTCTGCGGTTATTGATGTTGGAACTGTCGAAAAGATTAAGGAGGGATCTATAAAGGTACTTGATTAGTTATTAATACCTCGTGTGTGTAGATGATTAATTAACAAAAGCTTAATGATTCTTCCTTTATAGATAATTTACTAATTTTTGTATAAAATGCAATACTTTTTTTTATCAACACAACTATGAAGTTACTTCATGATATTTATTATTTGTGAAATTTTTATTAAAATTAAATTATAATATGTTCAAAACTATGGCACTTCCATTAAAGTAAGTGTGTGACATAACTTTGGATTTGGATGTCACAGGTTGTTCCTTCATATATCACTAGCATTGAGAAAAAGAAAGTTGTATTTGGAAACAACATGAAAAAAGAATTCGATGTGATCGTTTTCGCAACTGGCTACAAAAGCATAACTAATGGATGGCTTAAGGTATATGTCATAAATCATAATCATAATTAAGATAAAGGAAGAAAAATTGATGATCTTCTCCCTTACAATATACAACTTACATTTCATATTTTAACACTTTTGTGTGCTTTTTTTTATTGGACTTTATTTCTCATTCCCTTTCTAATTCTTCAAGTTATTAATATATTATATTATTTGATGTATTTTTCAAAGGATTACAAATATGCTCTTAATGAGAAAGGGATGCCAAAAAATGCTTACCCGAACCATTGGAAGGGGGATCATGGATTGTACTGTGCAGGACTGTCAAGGAGAGGCTTGTGGGGAGTCAAAATGGATGCAGAGTCAATTGCTGAGGACATCAACCAAACTTTTAATTTTCATAATTAA

Protein sequence

>MS.gene027681.t1

MQESTVVIVGAGPSGLAISACLTQNCISHIILEKDDFCASLWRKNAYDRLNLHLASEFCSLPLMPHPPSGPTYLSKYQFLQYIDKYVDHFNIKPHYCRTVESAKYDEVRNKWRVETKNTIEGILEVYEAKFLVIATGENSEGYIPNVPGLNNFEGEVVHSKYYKSGSKYESKEVLVVGCGNSGMEIAYDLYNSGANPSIVVRSPFHVFSREMIHQGMRMVKYFPVAIVDAIITLSAKLKYGDLSKYGIYRPKLGPLQLKNLTGKSAVIDVGTVEKIKEGSIKVVPSYITSIEKKKVVFGNNMKKEFDVIVFATGYKSITNGWLKDYKYALNEKGMPKNAYPNHWKGDHGLYCAGLSRRGLWGVKMDAESIAEDINQTFNFHN