Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027681.t1 | XP_003613143.1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 6.10E-204 | 719.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027681.t1 | Q9FVQ0 | 56.7 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 7.7e-123 | 441.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027681.t1 | G7JYZ1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 4.4e-204 | 719.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene031178 | MS.gene027681 | PPI |
MS.gene027681 | MS.gene60245 | PPI |
MS.gene027681 | MS.gene061851 | PPI |
MS.gene027681 | MS.gene31616 | PPI |
MS.gene027681 | MS.gene64265 | PPI |
MS.gene027681 | MS.gene56048 | PPI |
MS.gene027681 | MS.gene018590 | PPI |
MS.gene027681 | MS.gene015953 | PPI |
MS.gene51580 | MS.gene027681 | PPI |
MS.gene027681 | MS.gene064951 | PPI |
MS.gene24021 | MS.gene027681 | PPI |
MS.gene027681 | MS.gene059027 | PPI |
MS.gene027681 | MS.gene32792 | PPI |
MS.gene027681 | MS.gene61665 | PPI |
MS.gene027681 | MS.gene059136 | PPI |
MS.gene23537 | MS.gene027681 | PPI |
MS.gene027681 | MS.gene021474 | PPI |
MS.gene027681 | MS.gene53594 | PPI |
MS.gene027681 | MS.gene038029 | PPI |
MS.gene027681 | MS.gene014685 | PPI |
MS.gene94810 | MS.gene027681 | PPI |
MS.gene027681 | MS.gene09884 | PPI |
MS.gene027681 | MS.gene40340 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027681.t1 | MTR_5g033260 | 91.623 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 0.0 | 726 |
MS.gene027681.t1 | MTR_8g432640 | 83.770 | 382 | 62 | 0 | 1 | 382 | 1 | 382 | 0.0 | 667 |
MS.gene027681.t1 | MTR_3g088925 | 52.116 | 378 | 179 | 2 | 3 | 379 | 4 | 380 | 2.11e-139 | 402 |
MS.gene027681.t1 | MTR_3g088945 | 51.587 | 378 | 181 | 2 | 3 | 379 | 4 | 380 | 7.18e-138 | 399 |
MS.gene027681.t1 | MTR_3g088955 | 51.323 | 378 | 182 | 2 | 3 | 379 | 4 | 380 | 5.87e-137 | 396 |
MS.gene027681.t1 | MTR_7g107690 | 49.598 | 373 | 188 | 0 | 2 | 374 | 4 | 376 | 1.47e-136 | 395 |
MS.gene027681.t1 | MTR_4g051642 | 51.852 | 378 | 179 | 3 | 3 | 379 | 4 | 379 | 8.44e-134 | 389 |
MS.gene027681.t1 | MTR_7g107710 | 50.400 | 375 | 184 | 2 | 1 | 374 | 1 | 374 | 1.01e-132 | 385 |
MS.gene027681.t1 | MTR_3g109520 | 46.381 | 373 | 194 | 2 | 7 | 374 | 40 | 411 | 9.58e-121 | 356 |
MS.gene027681.t1 | MTR_1g069275 | 47.244 | 381 | 185 | 6 | 7 | 378 | 26 | 399 | 1.85e-117 | 348 |
MS.gene027681.t1 | MTR_6g086870 | 45.669 | 381 | 196 | 4 | 7 | 378 | 21 | 399 | 7.09e-117 | 346 |
MS.gene027681.t1 | MTR_1g008380 | 44.297 | 377 | 203 | 3 | 7 | 378 | 43 | 417 | 1.78e-116 | 345 |
MS.gene027681.t1 | MTR_7g099330 | 46.154 | 377 | 191 | 4 | 7 | 378 | 25 | 394 | 1.80e-116 | 345 |
MS.gene027681.t1 | MTR_1g046230 | 45.573 | 384 | 198 | 6 | 7 | 382 | 25 | 405 | 8.10e-116 | 343 |
MS.gene027681.t1 | MTR_1g011630 | 44.562 | 377 | 198 | 5 | 7 | 378 | 17 | 387 | 1.91e-114 | 339 |
MS.gene027681.t1 | MTR_3g096030 | 74.725 | 182 | 22 | 1 | 1 | 182 | 1 | 158 | 1.90e-90 | 269 |
MS.gene027681.t1 | MTR_7g099160 | 44.118 | 306 | 159 | 4 | 78 | 378 | 217 | 515 | 6.75e-83 | 263 |
MS.gene027681.t1 | MTR_3g096020 | 54.867 | 113 | 13 | 3 | 212 | 323 | 1 | 76 | 3.49e-24 | 104 |
MS.gene027681.t1 | MTR_2g450310 | 24.802 | 379 | 214 | 13 | 3 | 316 | 2 | 374 | 5.82e-15 | 76.6 |
MS.gene027681.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 5.22e-13 | 68.9 |
MS.gene027681.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 8.95e-13 | 68.9 |
MS.gene027681.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.30e-12 | 69.3 |
MS.gene027681.t1 | MTR_8g037880 | 23.874 | 222 | 142 | 5 | 6 | 202 | 4 | 223 | 1.81e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027681.t1 | AT1G48910 | 56.720 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 5.30e-157 | 447 |
MS.gene027681.t1 | AT1G21430 | 50.938 | 373 | 178 | 4 | 6 | 376 | 9 | 378 | 6.92e-131 | 381 |
MS.gene027681.t1 | AT1G04610 | 47.606 | 376 | 187 | 4 | 7 | 374 | 38 | 411 | 1.60e-122 | 361 |
MS.gene027681.t1 | AT5G11320 | 46.419 | 377 | 189 | 4 | 7 | 378 | 18 | 386 | 4.06e-119 | 352 |
MS.gene027681.t1 | AT5G25620 | 46.053 | 380 | 195 | 5 | 7 | 379 | 33 | 409 | 7.22e-118 | 348 |
MS.gene027681.t1 | AT5G25620 | 46.174 | 379 | 194 | 5 | 7 | 378 | 33 | 408 | 1.02e-117 | 349 |
MS.gene027681.t1 | AT5G43890 | 45.263 | 380 | 199 | 5 | 7 | 379 | 26 | 403 | 1.23e-116 | 346 |
MS.gene027681.t1 | AT1G04180 | 45.119 | 379 | 198 | 5 | 7 | 379 | 26 | 400 | 1.51e-116 | 345 |
MS.gene027681.t1 | AT4G32540 | 44.709 | 378 | 196 | 5 | 7 | 378 | 22 | 392 | 3.50e-115 | 342 |
MS.gene027681.t1 | AT4G32540 | 44.855 | 379 | 196 | 5 | 7 | 378 | 22 | 394 | 6.57e-115 | 341 |
MS.gene027681.t1 | AT4G28720 | 44.531 | 384 | 203 | 6 | 7 | 382 | 26 | 407 | 7.27e-115 | 341 |
MS.gene027681.t1 | AT4G13260 | 44.591 | 379 | 204 | 2 | 7 | 380 | 29 | 406 | 3.21e-113 | 337 |
MS.gene027681.t1 | AT2G33230 | 44.737 | 380 | 199 | 5 | 7 | 378 | 33 | 409 | 4.40e-110 | 329 |
MS.gene027681.t1 | AT5G11320 | 46.440 | 323 | 161 | 3 | 7 | 324 | 18 | 333 | 9.88e-100 | 300 |
MS.gene027681.t1 | AT4G13260 | 47.163 | 282 | 144 | 1 | 7 | 283 | 29 | 310 | 1.53e-89 | 273 |
MS.gene027681.t1 | AT4G13260 | 41.216 | 296 | 168 | 2 | 90 | 380 | 9 | 303 | 6.28e-74 | 233 |
MS.gene027681.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 1.80e-13 | 71.6 |
MS.gene027681.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 2.64e-13 | 71.6 |
MS.gene027681.t1 | AT1G65860 | 22.566 | 226 | 145 | 6 | 6 | 203 | 13 | 236 | 6.20e-11 | 64.3 |
MS.gene027681.t1 | AT1G12140 | 26.036 | 169 | 112 | 5 | 45 | 203 | 72 | 237 | 9.11e-11 | 63.5 |
MS.gene027681.t1 | AT1G12140 | 26.036 | 169 | 112 | 5 | 45 | 203 | 72 | 237 | 9.11e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGGATTTATCGTCCCAAAT+TGG | 0.218572 | 5.2:+23615542 | MS.gene027681:CDS |
GTATTGAAGGAATTGGTATT+TGG | 0.229329 | 5.2:-23613713 | None:intergenic |
AATTATGAAAATTAAAAGTT+TGG | 0.248270 | 5.2:-23616375 | None:intergenic |
GGATGCTATCATTACTTTAT+CGG | 0.293233 | 5.2:+23615488 | MS.gene027681:CDS |
ATTGTAGGTGCCGGTCCTTC+TGG | 0.299294 | 5.2:+23613511 | MS.gene027681:CDS |
AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 5.2:-23613688 | None:intergenic |
ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 5.2:+23613993 | MS.gene027681:CDS |
CTGAGGGTGGGTGAGGCATG+AGG | 0.329207 | 5.2:-23613675 | None:intergenic |
GAGTTGTAAAGGTCCCAATT+TGG | 0.331158 | 5.2:-23615556 | None:intergenic |
GGACTTCGAACGACAATAGA+TGG | 0.338818 | 5.2:-23614078 | None:intergenic |
TTATCGGCAAAACTAAAATA+TGG | 0.345197 | 5.2:+23615504 | MS.gene027681:CDS |
GAACACTATAGAAGGGATAT+TGG | 0.347771 | 5.2:+23613840 | MS.gene027681:CDS |
AGGCTTGTGGGGAGTCAAAA+TGG | 0.349213 | 5.2:+23616324 | MS.gene027681:CDS |
TGTCTATGTATTGAAGGAAT+TGG | 0.353488 | 5.2:-23613720 | None:intergenic |
AGTTGTAAAGGTCCCAATTT+GGG | 0.358601 | 5.2:-23615555 | None:intergenic |
TGGAACTGTCGAAAAGATTA+AGG | 0.360924 | 5.2:+23615614 | MS.gene027681:CDS |
GAAACAAAGAACACTATAGA+AGG | 0.371049 | 5.2:+23613832 | MS.gene027681:CDS |
CACTCTAAATATTACAAATC+TGG | 0.373703 | 5.2:+23613964 | MS.gene027681:CDS |
TTATTCAGTCCAGGCACATT+AGG | 0.380732 | 5.2:-23613922 | None:intergenic |
GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 5.2:-23613682 | None:intergenic |
ATCTATTGTCGTTCGAAGTC+CGG | 0.385488 | 5.2:+23614080 | MS.gene027681:CDS |
GGCTACAAAAGCATAACTAA+TGG | 0.402615 | 5.2:+23615998 | MS.gene027681:CDS |
GATTAAGGAGGGATCTATAA+AGG | 0.408201 | 5.2:+23615629 | MS.gene027681:CDS |
CATAACTAATGGATGGCTTA+AGG | 0.409785 | 5.2:+23616009 | MS.gene027681:CDS |
GGGATTTATCGTCCCAAATT+GGG | 0.412423 | 5.2:+23615543 | MS.gene027681:CDS |
CATATTTGTCTATGTATTGA+AGG | 0.420134 | 5.2:-23613726 | None:intergenic |
GGGACGATAAATCCCGTACT+TGG | 0.427951 | 5.2:-23615535 | None:intergenic |
GAATCCACGGTTGTAATTGT+AGG | 0.441201 | 5.2:+23613496 | MS.gene027681:CDS |
CTCATGCCTCACCCACCCTC+AGG | 0.443220 | 5.2:+23613676 | MS.gene027681:CDS |
AAATATGCTCTTAATGAGAA+AGG | 0.450742 | 5.2:+23616229 | MS.gene027681:CDS |
GTCAGATTCTTGAGTTGTAA+AGG | 0.452965 | 5.2:-23615567 | None:intergenic |
ATAGCATCCACAATAGCAAC+TGG | 0.454424 | 5.2:-23615474 | None:intergenic |
GCTTATGATCTCTATAACTC+GGG | 0.459427 | 5.2:+23614048 | MS.gene027681:CDS |
GGTATTTGGATAGGTAGGTT+GGG | 0.467624 | 5.2:-23613699 | None:intergenic |
TATGGTGATTTGTCCAAGTA+CGG | 0.467911 | 5.2:+23615522 | MS.gene027681:CDS |
GGATAGGTAGGTTGGGCCTG+AGG | 0.468970 | 5.2:-23613692 | None:intergenic |
AATATGCTCTTAATGAGAAA+GGG | 0.471517 | 5.2:+23616230 | MS.gene027681:CDS |
AGGGATATTGGAAGTTTATG+AGG | 0.472958 | 5.2:+23613852 | MS.gene027681:CDS |
TGAGGGTGGGTGAGGCATGA+GGG | 0.473573 | 5.2:-23613674 | None:intergenic |
ACTGTCAAGGAGAGGCTTGT+GGG | 0.478876 | 5.2:+23616312 | MS.gene027681:CDS |
AAGTTTCTTGTGATCGCCAC+TGG | 0.479220 | 5.2:+23613877 | MS.gene027681:CDS |
ATTTCACCATTCGCATCCCT+TGG | 0.479361 | 5.2:-23615446 | None:intergenic |
GAATTGGTATTTGGATAGGT+AGG | 0.480246 | 5.2:-23613704 | None:intergenic |
GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 5.2:+23613913 | MS.gene027681:CDS |
GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 5.2:-23613691 | None:intergenic |
GAAGGAATTGGTATTTGGAT+AGG | 0.493929 | 5.2:-23613708 | None:intergenic |
GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 5.2:-23613687 | None:intergenic |
AAGTCTGCGGTTATTGATGT+TGG | 0.503142 | 5.2:+23615594 | MS.gene027681:CDS |
ATGATGAGGTTAGAAACAAA+TGG | 0.503942 | 5.2:+23613803 | MS.gene027681:CDS |
TGGTATTTGGATAGGTAGGT+TGG | 0.507880 | 5.2:-23613700 | None:intergenic |
AAAATGCTTACCCGAACCAT+TGG | 0.508101 | 5.2:+23616260 | MS.gene027681:CDS |
AATTGCTAGGCCAGAAGGAC+CGG | 0.508395 | 5.2:-23613521 | None:intergenic |
CCTTCAAAGTTATTCAGTCC+AGG | 0.511343 | 5.2:-23613931 | None:intergenic |
GATCATGGATTGTACTGTGC+AGG | 0.519262 | 5.2:+23616289 | MS.gene027681:CDS |
CCTGGACTGAATAACTTTGA+AGG | 0.524426 | 5.2:+23613931 | MS.gene027681:CDS |
TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 5.2:+23613987 | MS.gene027681:CDS |
TGCTTATGATCTCTATAACT+CGG | 0.526560 | 5.2:+23614047 | MS.gene027681:CDS |
ATGGTGATTTGTCCAAGTAC+GGG | 0.532353 | 5.2:+23615523 | MS.gene027681:CDS |
GACTGTCAAGGAGAGGCTTG+TGG | 0.533040 | 5.2:+23616311 | MS.gene027681:CDS |
GTAGTTGGGTGTGGTAACTC+AGG | 0.547445 | 5.2:+23614015 | MS.gene027681:CDS |
GAGGGTGGGTGAGGCATGAG+GGG | 0.557145 | 5.2:-23613673 | None:intergenic |
TCAATGCTAGTGATATATGA+AGG | 0.561811 | 5.2:-23615911 | None:intergenic |
TTACAACTCAAGAATCTGAC+AGG | 0.563342 | 5.2:+23615570 | MS.gene027681:CDS |
GCAGAAATTGCTAGGCCAGA+AGG | 0.563796 | 5.2:-23613526 | None:intergenic |
ACAAAAGCATAACTAATGGA+TGG | 0.570034 | 5.2:+23616002 | MS.gene027681:CDS |
TTAGGCAAGCAGAAATTGCT+AGG | 0.575098 | 5.2:-23613534 | None:intergenic |
TGCTTACCCGAACCATTGGA+AGG | 0.577260 | 5.2:+23616264 | MS.gene027681:CDS |
ACGGTTGTAATTGTAGGTGC+CGG | 0.579524 | 5.2:+23613502 | MS.gene027681:CDS |
ATGAGGTTAGAAACAAATGG+AGG | 0.583201 | 5.2:+23613806 | MS.gene027681:CDS |
CTGTCAAGGAGAGGCTTGTG+GGG | 0.591890 | 5.2:+23616313 | MS.gene027681:CDS |
TGGGTGTGGTAACTCAGGAA+TGG | 0.594724 | 5.2:+23614020 | MS.gene027681:CDS |
CTTACCCGAACCATTGGAAG+GGG | 0.603003 | 5.2:+23616266 | MS.gene027681:CDS |
CAACAATATGCAAGAATCCA+CGG | 0.609354 | 5.2:+23613483 | None:intergenic |
AAACAAAGAACACTATAGAA+GGG | 0.614313 | 5.2:+23613833 | MS.gene027681:CDS |
GCTTACCCGAACCATTGGAA+GGG | 0.616793 | 5.2:+23616265 | MS.gene027681:CDS |
TGTACTGTGCAGGACTGTCA+AGG | 0.617174 | 5.2:+23616299 | MS.gene027681:CDS |
AACTGTCGAAAAGATTAAGG+AGG | 0.618608 | 5.2:+23615617 | MS.gene027681:CDS |
GTAGAGAAATGATTCACCAA+GGG | 0.627830 | 5.2:+23615430 | MS.gene027681:CDS |
ACTGAATAACTTTGAAGGAG+AGG | 0.632240 | 5.2:+23613936 | MS.gene027681:CDS |
ACTGTCGAAAAGATTAAGGA+GGG | 0.634444 | 5.2:+23615618 | MS.gene027681:CDS |
GCCACTGGTGAAAATAGTGA+AGG | 0.638559 | 5.2:+23613892 | MS.gene027681:CDS |
AGCAAAACTCACTAGCCAAG+TGG | 0.645422 | 5.2:-23613645 | None:intergenic |
TGAGGTTAGAAACAAATGGA+GGG | 0.645489 | 5.2:+23613807 | MS.gene027681:CDS |
GAATAACTTTGAAGGAGAGG+TGG | 0.646286 | 5.2:+23613939 | MS.gene027681:CDS |
TGAGTCTGCTAAGTATGATG+AGG | 0.653647 | 5.2:+23613789 | MS.gene027681:CDS |
GGCACCTACAATTACAACCG+TGG | 0.654130 | 5.2:-23613500 | None:intergenic |
TGATCGTCTAAACCTCCACT+TGG | 0.657123 | 5.2:+23613630 | MS.gene027681:CDS |
GGATGCAGAGTCAATTGCTG+AGG | 0.658304 | 5.2:+23616345 | MS.gene027681:CDS |
GACTTCGAACGACAATAGAT+GGG | 0.661642 | 5.2:-23614077 | None:intergenic |
GATTCACCAAGGGATGCGAA+TGG | 0.671019 | 5.2:+23615440 | MS.gene027681:CDS |
AGTAGAGAAATGATTCACCA+AGG | 0.673155 | 5.2:+23615429 | MS.gene027681:CDS |
AAAACTCACTAGCCAAGTGG+AGG | 0.678012 | 5.2:-23613642 | None:intergenic |
TGTGCAGGACTGTCAAGGAG+AGG | 0.680971 | 5.2:+23616304 | MS.gene027681:CDS |
TCAACTGTGCGACAATAGTG+AGG | 0.686001 | 5.2:-23613769 | None:intergenic |
GAATCTGACAGGAAAGTCTG+CGG | 0.715867 | 5.2:+23615581 | MS.gene027681:CDS |
TTACCCGAACCATTGGAAGG+GGG | 0.721390 | 5.2:+23616267 | MS.gene027681:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGTAAATTATCTATAA+AGG | - | chr5.2:23615720-23615739 | None:intergenic | 10.0% |
!! | AATTATGAAAATTAAAAGTT+TGG | - | chr5.2:23616378-23616397 | None:intergenic | 10.0% |
!! | CAATATAAAAAAAAAATGTA+TGG | + | chr5.2:23615338-23615357 | MS.gene027681:intron | 10.0% |
!!! | ATCAATATTATACAATATTT+TGG | + | chr5.2:23614425-23614444 | MS.gene027681:intron | 10.0% |
!!! | TTTTTTTTTTTTAACAATGT+TGG | + | chr5.2:23615208-23615227 | MS.gene027681:intron | 10.0% |
!! | AATTTAAATTTGTATACCTA+AGG | + | chr5.2:23614158-23614177 | MS.gene027681:intron | 15.0% |
!! | CATAATCATAATTAAGATAA+AGG | + | chr5.2:23616046-23616065 | MS.gene027681:intron | 15.0% |
!! | TTATAATATGTTCAAAACTA+TGG | + | chr5.2:23615831-23615850 | MS.gene027681:intron | 15.0% |
!!! | AAATTTTTATATGTATCCTT+AGG | - | chr5.2:23614177-23614196 | None:intergenic | 15.0% |
!!! | TTATTTGATGTATTTTTCAA+AGG | + | chr5.2:23616201-23616220 | MS.gene027681:intron | 15.0% |
!! | AATAACTTGAAGAATTAGAA+AGG | - | chr5.2:23616170-23616189 | None:intergenic | 20.0% |
!! | AATGTAAGTTGTATATTGTA+AGG | - | chr5.2:23616094-23616113 | None:intergenic | 20.0% |
!! | ATAACTTGAAGAATTAGAAA+GGG | - | chr5.2:23616169-23616188 | None:intergenic | 20.0% |
!! | ATACATACATACATACATAT+AGG | - | chr5.2:23615070-23615089 | None:intergenic | 20.0% |
!! | ATATATTGAAAAAGAATAGC+TGG | - | chr5.2:23614349-23614368 | None:intergenic | 20.0% |
!! | ATATGATCATCATAAAAACA+GGG | + | chr5.2:23615166-23615185 | MS.gene027681:intron | 20.0% |
!! | ATGTAAGTTGTATATTGTAA+GGG | - | chr5.2:23616093-23616112 | None:intergenic | 20.0% |
!! | GAGTTAGAAATATTATTTAC+CGG | - | chr5.2:23614102-23614121 | None:intergenic | 20.0% |
!! | TACATACATACATACATATA+GGG | - | chr5.2:23615069-23615088 | None:intergenic | 20.0% |
!! | TATATGATCATCATAAAAAC+AGG | + | chr5.2:23615165-23615184 | MS.gene027681:intron | 20.0% |
!! | TTCAAAATATGAATCAAAAG+AGG | + | chr5.2:23613987-23614006 | MS.gene027681:CDS | 20.0% |
!!! | GGAAGTAAGAATAATTTTTT+TGG | + | chr5.2:23614509-23614528 | MS.gene027681:intron | 20.0% |
!!! | TTTTGTGTGCTTTTTTTTAT+TGG | + | chr5.2:23616128-23616147 | MS.gene027681:intron | 20.0% |
! | AAACAAAGAACACTATAGAA+GGG | + | chr5.2:23613833-23613852 | MS.gene027681:CDS | 25.0% |
! | AAATATGCTCTTAATGAGAA+AGG | + | chr5.2:23616229-23616248 | MS.gene027681:CDS | 25.0% |
! | AAGTAGTTAAATACACCTTA+AGG | - | chr5.2:23614838-23614857 | None:intergenic | 25.0% |
! | AAGTTGTTAAATACACCTTA+AGG | - | chr5.2:23614985-23615004 | None:intergenic | 25.0% |
! | AATATGCTCTTAATGAGAAA+GGG | + | chr5.2:23616230-23616249 | MS.gene027681:CDS | 25.0% |
! | ACACCTTAATAAAAACTAGT+GGG | + | chr5.2:23615028-23615047 | MS.gene027681:intron | 25.0% |
! | CACTCTAAATATTACAAATC+TGG | + | chr5.2:23613964-23613983 | MS.gene027681:CDS | 25.0% |
! | CATATTTGTCTATGTATTGA+AGG | - | chr5.2:23613729-23613748 | None:intergenic | 25.0% |
! | GAGAAAAAGAAAGTTGTATT+TGG | + | chr5.2:23615932-23615951 | MS.gene027681:CDS | 25.0% |
! | TTATCGGCAAAACTAAAATA+TGG | + | chr5.2:23615504-23615523 | MS.gene027681:CDS | 25.0% |
!! | ACACCTTCTAAAAAAATAAG+TGG | - | chr5.2:23614946-23614965 | None:intergenic | 25.0% |
!! | ACACCTTCTAAAAAATAAGT+GGG | + | chr5.2:23614880-23614899 | MS.gene027681:intron | 25.0% |
!! | ATATGAATCAAAAGAGGTTT+TGG | + | chr5.2:23613993-23614012 | MS.gene027681:CDS | 25.0% |
!! | ATCTGAGATTGAATTATTAG+TGG | + | chr5.2:23614466-23614485 | MS.gene027681:intron | 25.0% |
!! | CACCTTCTAAAAAAATAAGT+GGG | - | chr5.2:23614945-23614964 | None:intergenic | 25.0% |
!! | TAAAGACAATATGTGTTTTG+TGG | + | chr5.2:23615367-23615386 | MS.gene027681:intron | 25.0% |
!! | TCTGAGATTGAATTATTAGT+GGG | + | chr5.2:23614467-23614486 | MS.gene027681:intron | 25.0% |
!!! | GGGCTATTTTTTTTTTTTGA+AGG | + | chr5.2:23614488-23614507 | MS.gene027681:intron | 25.0% |
ATGATGAGGTTAGAAACAAA+TGG | + | chr5.2:23613803-23613822 | MS.gene027681:CDS | 30.0% | |
ATGTCACACACTTACTTTAA+TGG | - | chr5.2:23615862-23615881 | None:intergenic | 30.0% | |
CACACCTTAATAAAAACTAG+TGG | + | chr5.2:23615027-23615046 | MS.gene027681:intron | 30.0% | |
CTGAGATTGAATTATTAGTG+GGG | + | chr5.2:23614468-23614487 | MS.gene027681:intron | 30.0% | |
GAAACAAAGAACACTATAGA+AGG | + | chr5.2:23613832-23613851 | MS.gene027681:CDS | 30.0% | |
GGATGCTATCATTACTTTAT+CGG | + | chr5.2:23615488-23615507 | MS.gene027681:CDS | 30.0% | |
GTATTGAAGGAATTGGTATT+TGG | - | chr5.2:23613716-23613735 | None:intergenic | 30.0% | |
TCAATGCTAGTGATATATGA+AGG | - | chr5.2:23615914-23615933 | None:intergenic | 30.0% | |
TGCTTATGATCTCTATAACT+CGG | + | chr5.2:23614047-23614066 | MS.gene027681:CDS | 30.0% | |
TGTCTATGTATTGAAGGAAT+TGG | - | chr5.2:23613723-23613742 | None:intergenic | 30.0% | |
TTATAGATGTCCAACTAGAT+AGG | - | chr5.2:23614395-23614414 | None:intergenic | 30.0% | |
! | ACAAAAGCATAACTAATGGA+TGG | + | chr5.2:23616002-23616021 | MS.gene027681:CDS | 30.0% |
! | ATGATTTTTGTGCTTCTCTT+TGG | + | chr5.2:23613593-23613612 | MS.gene027681:CDS | 30.0% |
! | CACACCTTCTAAAAAATAAG+TGG | + | chr5.2:23614879-23614898 | MS.gene027681:intron | 30.0% |
! | TTTTAGCAACATTCACCTTA+AGG | + | chr5.2:23614967-23614986 | MS.gene027681:intron | 30.0% |
!! | AGTGAGGTTTTATGTTGAAA+TGG | - | chr5.2:23613756-23613775 | None:intergenic | 30.0% |
!! | ATATTTTCCAGTTGCTATTG+TGG | + | chr5.2:23615467-23615486 | MS.gene027681:CDS | 30.0% |
!!! | AATATTTTGGTGTGTTAACC+AGG | + | chr5.2:23614438-23614457 | MS.gene027681:intron | 30.0% |
!!! | ACACCCACTAGTTTTTATTA+AGG | - | chr5.2:23615034-23615053 | None:intergenic | 30.0% |
!!! | ACACCCACTTATTTTTTAGA+AGG | - | chr5.2:23614886-23614905 | None:intergenic | 30.0% |
!!! | ATATTTTGGTGTGTTAACCA+GGG | + | chr5.2:23614439-23614458 | MS.gene027681:intron | 30.0% |
!!! | CACCCACTTATTTTTTTAGA+AGG | + | chr5.2:23614940-23614959 | MS.gene027681:intron | 30.0% |
!!! | TTGTTTTAGACCTATCTAGT+TGG | + | chr5.2:23614382-23614401 | MS.gene027681:intron | 30.0% |
AACTGTCGAAAAGATTAAGG+AGG | + | chr5.2:23615617-23615636 | MS.gene027681:CDS | 35.0% | |
ACTCCCACATAAAAACTAGT+GGG | - | chr5.2:23614799-23614818 | None:intergenic | 35.0% | |
ACTGTCGAAAAGATTAAGGA+GGG | + | chr5.2:23615618-23615637 | MS.gene027681:CDS | 35.0% | |
AGGGATATTGGAAGTTTATG+AGG | + | chr5.2:23613852-23613871 | MS.gene027681:CDS | 35.0% | |
AGTAGAGAAATGATTCACCA+AGG | + | chr5.2:23615429-23615448 | MS.gene027681:CDS | 35.0% | |
AGTTGTAAAGGTCCCAATTT+GGG | - | chr5.2:23615558-23615577 | None:intergenic | 35.0% | |
ATGAGGTTAGAAACAAATGG+AGG | + | chr5.2:23613806-23613825 | MS.gene027681:CDS | 35.0% | |
ATTAATCATCTACACACACG+AGG | - | chr5.2:23615675-23615694 | None:intergenic | 35.0% | |
GAACACTATAGAAGGGATAT+TGG | + | chr5.2:23613840-23613859 | MS.gene027681:CDS | 35.0% | |
GAAGGAATTGGTATTTGGAT+AGG | - | chr5.2:23613711-23613730 | None:intergenic | 35.0% | |
GAATTGGTATTTGGATAGGT+AGG | - | chr5.2:23613707-23613726 | None:intergenic | 35.0% | |
GATTAAGGAGGGATCTATAA+AGG | + | chr5.2:23615629-23615648 | MS.gene027681:CDS | 35.0% | |
GCTTATGATCTCTATAACTC+GGG | + | chr5.2:23614048-23614067 | MS.gene027681:CDS | 35.0% | |
GTAAGTGTGTGACATAACTT+TGG | + | chr5.2:23615867-23615886 | MS.gene027681:intron | 35.0% | |
GTAGAGAAATGATTCACCAA+GGG | + | chr5.2:23615430-23615449 | MS.gene027681:CDS | 35.0% | |
GTGTGACATAACTTTGGATT+TGG | + | chr5.2:23615873-23615892 | MS.gene027681:intron | 35.0% | |
TGAGGTTAGAAACAAATGGA+GGG | + | chr5.2:23613807-23613826 | MS.gene027681:CDS | 35.0% | |
TGGAACTGTCGAAAAGATTA+AGG | + | chr5.2:23615614-23615633 | MS.gene027681:CDS | 35.0% | |
TGTATGTTAGCATCTCCTAT+AGG | - | chr5.2:23614922-23614941 | None:intergenic | 35.0% | |
TTACAACTCAAGAATCTGAC+AGG | + | chr5.2:23615570-23615589 | MS.gene027681:CDS | 35.0% | |
! | ACTGAATAACTTTGAAGGAG+AGG | + | chr5.2:23613936-23613955 | MS.gene027681:CDS | 35.0% |
! | ATTTTTGTGCTTCTCTTTGG+AGG | + | chr5.2:23613596-23613615 | MS.gene027681:CDS | 35.0% |
! | CATAACTAATGGATGGCTTA+AGG | + | chr5.2:23616009-23616028 | MS.gene027681:CDS | 35.0% |
! | CATACATATAGGGATTTGCT+AGG | - | chr5.2:23615059-23615078 | None:intergenic | 35.0% |
! | GGCTACAAAAGCATAACTAA+TGG | + | chr5.2:23615998-23616017 | MS.gene027681:CDS | 35.0% |
! | GTCAGATTCTTGAGTTGTAA+AGG | - | chr5.2:23615570-23615589 | None:intergenic | 35.0% |
! | TATGGTGATTTGTCCAAGTA+CGG | + | chr5.2:23615522-23615541 | MS.gene027681:CDS | 35.0% |
! | TTTTAGCAAGCTACACCTTA+AGG | + | chr5.2:23614820-23614839 | MS.gene027681:intron | 35.0% |
!! | CAAAAGAGGTTTTGGTAGTT+GGG | + | chr5.2:23614001-23614020 | MS.gene027681:CDS | 35.0% |
!! | TCAAAAGAGGTTTTGGTAGT+TGG | + | chr5.2:23614000-23614019 | MS.gene027681:CDS | 35.0% |
!!! | ACACCCACTAGTTTTTATGT+GGG | + | chr5.2:23614793-23614812 | MS.gene027681:intron | 35.0% |
!!! | TATTTTGGTGTGTTAACCAG+GGG | + | chr5.2:23614440-23614459 | MS.gene027681:intron | 35.0% |
AAAATGCTTACCCGAACCAT+TGG | + | chr5.2:23616260-23616279 | MS.gene027681:CDS | 40.0% | |
AAGTCTGCGGTTATTGATGT+TGG | + | chr5.2:23615594-23615613 | MS.gene027681:CDS | 40.0% | |
ACTTTGGATTTGGATGTCAC+AGG | + | chr5.2:23615883-23615902 | MS.gene027681:intron | 40.0% | |
ATAGCATCCACAATAGCAAC+TGG | - | chr5.2:23615477-23615496 | None:intergenic | 40.0% | |
ATCTATTGTCGTTCGAAGTC+CGG | + | chr5.2:23614080-23614099 | MS.gene027681:CDS | 40.0% | |
ATCTCCTATAGGCATTTGCT+AGG | - | chr5.2:23614911-23614930 | None:intergenic | 40.0% | |
CACTCCCACATAAAAACTAG+TGG | - | chr5.2:23614800-23614819 | None:intergenic | 40.0% | |
CCTGGACTGAATAACTTTGA+AGG | + | chr5.2:23613931-23613950 | MS.gene027681:CDS | 40.0% | |
CCTTCAAAGTTATTCAGTCC+AGG | - | chr5.2:23613934-23613953 | None:intergenic | 40.0% | |
GAATCCACGGTTGTAATTGT+AGG | + | chr5.2:23613496-23613515 | MS.gene027681:CDS | 40.0% | |
GACTTCGAACGACAATAGAT+GGG | - | chr5.2:23614080-23614099 | None:intergenic | 40.0% | |
GAGTTGTAAAGGTCCCAATT+TGG | - | chr5.2:23615559-23615578 | None:intergenic | 40.0% | |
GGGATTTATCGTCCCAAATT+GGG | + | chr5.2:23615543-23615562 | MS.gene027681:CDS | 40.0% | |
GGTATTTGGATAGGTAGGTT+GGG | - | chr5.2:23613702-23613721 | None:intergenic | 40.0% | |
GGTTATATTCCTAATGTGCC+TGG | + | chr5.2:23613913-23613932 | MS.gene027681:CDS | 40.0% | |
GTATCCTAGCAAATGCCTAT+AGG | + | chr5.2:23614904-23614923 | MS.gene027681:intron | 40.0% | |
TGAGTCTGCTAAGTATGATG+AGG | + | chr5.2:23613789-23613808 | MS.gene027681:CDS | 40.0% | |
TGGTATTTGGATAGGTAGGT+TGG | - | chr5.2:23613703-23613722 | None:intergenic | 40.0% | |
TTAGGCAAGCAGAAATTGCT+AGG | - | chr5.2:23613537-23613556 | None:intergenic | 40.0% | |
TTATTCAGTCCAGGCACATT+AGG | - | chr5.2:23613925-23613944 | None:intergenic | 40.0% | |
! | ACCTTCACTATTTTCACCAG+TGG | - | chr5.2:23613896-23613915 | None:intergenic | 40.0% |
! | ATGGTGATTTGTCCAAGTAC+GGG | + | chr5.2:23615523-23615542 | MS.gene027681:CDS | 40.0% |
! | GAATAACTTTGAAGGAGAGG+TGG | + | chr5.2:23613939-23613958 | MS.gene027681:CDS | 40.0% |
!! | GAGAGATGCAGTTTTGTGTT+AGG | - | chr5.2:23613555-23613574 | None:intergenic | 40.0% |
!!! | CACACCCACTAGTTTTTATG+TGG | + | chr5.2:23614792-23614811 | MS.gene027681:intron | 40.0% |
!!! | TGGTTCGGGTAAGCATTTTT+TGG | - | chr5.2:23616259-23616278 | None:intergenic | 40.0% |
AAAACTCACTAGCCAAGTGG+AGG | - | chr5.2:23613645-23613664 | None:intergenic | 45.0% | |
AAGTTTCTTGTGATCGCCAC+TGG | + | chr5.2:23613877-23613896 | MS.gene027681:CDS | 45.0% | |
ACGGTTGTAATTGTAGGTGC+CGG | + | chr5.2:23613502-23613521 | MS.gene027681:CDS | 45.0% | |
AGCAAAACTCACTAGCCAAG+TGG | - | chr5.2:23613648-23613667 | None:intergenic | 45.0% | |
ATTTCACCATTCGCATCCCT+TGG | - | chr5.2:23615449-23615468 | None:intergenic | 45.0% | |
CGGGATTTATCGTCCCAAAT+TGG | + | chr5.2:23615542-23615561 | MS.gene027681:CDS | 45.0% | |
GAATCTGACAGGAAAGTCTG+CGG | + | chr5.2:23615581-23615600 | MS.gene027681:CDS | 45.0% | |
GCCACTGGTGAAAATAGTGA+AGG | + | chr5.2:23613892-23613911 | MS.gene027681:CDS | 45.0% | |
GGACTTCGAACGACAATAGA+TGG | - | chr5.2:23614081-23614100 | None:intergenic | 45.0% | |
TCAACTGTGCGACAATAGTG+AGG | - | chr5.2:23613772-23613791 | None:intergenic | 45.0% | |
TGATCGTCTAAACCTCCACT+TGG | + | chr5.2:23613630-23613649 | MS.gene027681:CDS | 45.0% | |
TGTATGTGTGTGTGTGTGTG+CGG | - | chr5.2:23614637-23614656 | None:intergenic | 45.0% | |
! | GATCATGGATTGTACTGTGC+AGG | + | chr5.2:23616289-23616308 | MS.gene027681:CDS | 45.0% |
! | GATGTGATCGTTTTCGCAAC+TGG | + | chr5.2:23615977-23615996 | MS.gene027681:CDS | 45.0% |
!! | TATTCAAAAAATAATAATAA+TGG | - | chr5.2:23615249-23615268 | None:intergenic | 5.0% |
!!! | ATAAAAATTTATTTTTTGAA+GGG | + | chr5.2:23614187-23614206 | MS.gene027681:intron | 5.0% |
!!! | TATAAAAATTTATTTTTTGA+AGG | + | chr5.2:23614186-23614205 | MS.gene027681:intron | 5.0% |
AACCATTGGAAGGGGGATCA+TGG | + | chr5.2:23616274-23616293 | MS.gene027681:CDS | 50.0% | |
AATTGCTAGGCCAGAAGGAC+CGG | - | chr5.2:23613524-23613543 | None:intergenic | 50.0% | |
ACTGTCAAGGAGAGGCTTGT+GGG | + | chr5.2:23616312-23616331 | MS.gene027681:CDS | 50.0% | |
AGGCTTGTGGGGAGTCAAAA+TGG | + | chr5.2:23616324-23616343 | MS.gene027681:CDS | 50.0% | |
ATCCATGATCCCCCTTCCAA+TGG | - | chr5.2:23616279-23616298 | None:intergenic | 50.0% | |
CTTACCCGAACCATTGGAAG+GGG | + | chr5.2:23616266-23616285 | MS.gene027681:CDS | 50.0% | |
GATTCACCAAGGGATGCGAA+TGG | + | chr5.2:23615440-23615459 | MS.gene027681:CDS | 50.0% | |
GCAGAAATTGCTAGGCCAGA+AGG | - | chr5.2:23613529-23613548 | None:intergenic | 50.0% | |
GCTTACCCGAACCATTGGAA+GGG | + | chr5.2:23616265-23616284 | MS.gene027681:CDS | 50.0% | |
GGATGCAGAGTCAATTGCTG+AGG | + | chr5.2:23616345-23616364 | MS.gene027681:CDS | 50.0% | |
GGCACCTACAATTACAACCG+TGG | - | chr5.2:23613503-23613522 | None:intergenic | 50.0% | |
GGGACGATAAATCCCGTACT+TGG | - | chr5.2:23615538-23615557 | None:intergenic | 50.0% | |
GTAGTTGGGTGTGGTAACTC+AGG | + | chr5.2:23614015-23614034 | MS.gene027681:CDS | 50.0% | |
GTATGTGTGTGTGTGTGTGC+GGG | - | chr5.2:23614636-23614655 | None:intergenic | 50.0% | |
TATGTGTGTGTGTGTGTGCG+GGG | - | chr5.2:23614635-23614654 | None:intergenic | 50.0% | |
TGATCCCCCTTCCAATGGTT+CGG | - | chr5.2:23616274-23616293 | None:intergenic | 50.0% | |
TGCTTACCCGAACCATTGGA+AGG | + | chr5.2:23616264-23616283 | MS.gene027681:CDS | 50.0% | |
TGGGTGTGGTAACTCAGGAA+TGG | + | chr5.2:23614020-23614039 | MS.gene027681:CDS | 50.0% | |
TGTACTGTGCAGGACTGTCA+AGG | + | chr5.2:23616299-23616318 | MS.gene027681:CDS | 50.0% | |
TTACCCGAACCATTGGAAGG+GGG | + | chr5.2:23616267-23616286 | MS.gene027681:CDS | 50.0% | |
! | TTTGGTGTGTTAACCAGGGG+CGG | + | chr5.2:23614443-23614462 | MS.gene027681:intron | 50.0% |
!! | GAGGTTTTGGTAGTTGGGTG+TGG | + | chr5.2:23614006-23614025 | MS.gene027681:CDS | 50.0% |
CTGTCAAGGAGAGGCTTGTG+GGG | + | chr5.2:23616313-23616332 | MS.gene027681:CDS | 55.0% | |
GACTGTCAAGGAGAGGCTTG+TGG | + | chr5.2:23616311-23616330 | MS.gene027681:CDS | 55.0% | |
GATCCCCCTTCCAATGGTTC+GGG | - | chr5.2:23616273-23616292 | None:intergenic | 55.0% | |
TGTGCAGGACTGTCAAGGAG+AGG | + | chr5.2:23616304-23616323 | MS.gene027681:CDS | 55.0% | |
TTCAATCTCAGATCCGCCCC+TGG | - | chr5.2:23614459-23614478 | None:intergenic | 55.0% | |
! | GATAGGTAGGTTGGGCCTGA+GGG | - | chr5.2:23613694-23613713 | None:intergenic | 55.0% |
!! | ATTGTAGGTGCCGGTCCTTC+TGG | + | chr5.2:23613511-23613530 | MS.gene027681:CDS | 55.0% |
TGAGGGTGGGTGAGGCATGA+GGG | - | chr5.2:23613677-23613696 | None:intergenic | 60.0% | |
! | GGATAGGTAGGTTGGGCCTG+AGG | - | chr5.2:23613695-23613714 | None:intergenic | 60.0% |
CTCATGCCTCACCCACCCTC+AGG | + | chr5.2:23613676-23613695 | MS.gene027681:CDS | 65.0% | |
CTGAGGGTGGGTGAGGCATG+AGG | - | chr5.2:23613678-23613697 | None:intergenic | 65.0% | |
GAGGGTGGGTGAGGCATGAG+GGG | - | chr5.2:23613676-23613695 | None:intergenic | 65.0% | |
! | AGGTAGGTTGGGCCTGAGGG+TGG | - | chr5.2:23613691-23613710 | None:intergenic | 65.0% |
! | GGTAGGTTGGGCCTGAGGGT+GGG | - | chr5.2:23613690-23613709 | None:intergenic | 65.0% |
GTTGGGCCTGAGGGTGGGTG+AGG | - | chr5.2:23613685-23613704 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 23613490 | 23616399 | 23613490 | ID=MS.gene027681 |
chr5.2 | mRNA | 23613490 | 23616399 | 23613490 | ID=MS.gene027681.t1;Parent=MS.gene027681 |
chr5.2 | exon | 23613490 | 23614101 | 23613490 | ID=MS.gene027681.t1.exon1;Parent=MS.gene027681.t1 |
chr5.2 | CDS | 23613490 | 23614101 | 23613490 | ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1 |
chr5.2 | exon | 23615417 | 23615650 | 23615417 | ID=MS.gene027681.t1.exon2;Parent=MS.gene027681.t1 |
chr5.2 | CDS | 23615417 | 23615650 | 23615417 | ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1 |
chr5.2 | exon | 23615905 | 23616030 | 23615905 | ID=MS.gene027681.t1.exon3;Parent=MS.gene027681.t1 |
chr5.2 | CDS | 23615905 | 23616030 | 23615905 | ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1 |
chr5.2 | exon | 23616223 | 23616399 | 23616223 | ID=MS.gene027681.t1.exon4;Parent=MS.gene027681.t1 |
chr5.2 | CDS | 23616223 | 23616399 | 23616223 | ID=cds.MS.gene027681.t1;Parent=MS.gene027681.t1 |
Gene Sequence |
Protein sequence |