Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41679.t1 | XP_003602787.1 | 96.3 | 540 | 20 | 0 | 1 | 540 | 1 | 540 | 2.10E-290 | 1007.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41679.t1 | Q8W475 | 47.3 | 529 | 246 | 9 | 11 | 534 | 8 | 508 | 6.2e-118 | 426.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41679.t1 | G7J3D7 | 96.3 | 540 | 20 | 0 | 1 | 540 | 1 | 540 | 1.5e-290 | 1007.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene41679 | 0.847544 | 1.08E-59 | -1.69E-46 |
MS.gene049159 | MS.gene41679 | 0.852394 | 4.75E-61 | -1.69E-46 |
MS.gene049190 | MS.gene41679 | 0.836811 | 7.52E-57 | -1.69E-46 |
MS.gene049255 | MS.gene41679 | 0.822171 | 2.73E-53 | -1.69E-46 |
MS.gene049341 | MS.gene41679 | 0.831626 | 1.50E-55 | -1.69E-46 |
MS.gene049404 | MS.gene41679 | 0.857003 | 2.19E-62 | -1.69E-46 |
MS.gene049501 | MS.gene41679 | 0.81012 | 1.35E-50 | -1.69E-46 |
MS.gene049824 | MS.gene41679 | 0.812641 | 3.83E-51 | -1.69E-46 |
MS.gene049825 | MS.gene41679 | 0.806254 | 8.99E-50 | -1.69E-46 |
MS.gene049850 | MS.gene41679 | 0.844231 | 8.59E-59 | -1.69E-46 |
MS.gene049873 | MS.gene41679 | 0.80369 | 3.09E-49 | -1.69E-46 |
MS.gene049979 | MS.gene41679 | 0.824432 | 8.10E-54 | -1.69E-46 |
MS.gene050020 | MS.gene41679 | 0.845426 | 4.09E-59 | -1.69E-46 |
MS.gene05016 | MS.gene41679 | 0.821631 | 3.64E-53 | -1.69E-46 |
MS.gene050251 | MS.gene41679 | 0.806987 | 6.30E-50 | -1.69E-46 |
MS.gene050384 | MS.gene41679 | 0.809274 | 2.05E-50 | -1.69E-46 |
MS.gene050442 | MS.gene41679 | 0.803557 | 3.29E-49 | -1.69E-46 |
MS.gene05045 | MS.gene41679 | 0.814584 | 1.43E-51 | -1.69E-46 |
MS.gene050551 | MS.gene41679 | 0.803831 | 2.89E-49 | -1.69E-46 |
MS.gene050561 | MS.gene41679 | 0.802096 | 6.60E-49 | -1.69E-46 |
MS.gene050689 | MS.gene41679 | 0.86036 | 2.18E-63 | -1.69E-46 |
MS.gene050719 | MS.gene41679 | 0.823134 | 1.63E-53 | -1.69E-46 |
MS.gene050721 | MS.gene41679 | 0.819864 | 9.29E-53 | -1.69E-46 |
MS.gene050724 | MS.gene41679 | 0.821448 | 4.02E-53 | -1.69E-46 |
MS.gene050780 | MS.gene41679 | 0.801375 | 9.28E-49 | -1.69E-46 |
MS.gene050807 | MS.gene41679 | 0.841078 | 5.91E-58 | -1.69E-46 |
MS.gene050808 | MS.gene41679 | 0.812261 | 4.63E-51 | -1.69E-46 |
MS.gene050815 | MS.gene41679 | 0.817848 | 2.67E-52 | -1.69E-46 |
MS.gene050959 | MS.gene41679 | 0.805018 | 1.63E-49 | -1.69E-46 |
MS.gene051180 | MS.gene41679 | 0.808239 | 3.42E-50 | -1.69E-46 |
MS.gene051198 | MS.gene41679 | 0.807042 | 6.13E-50 | -1.69E-46 |
MS.gene051243 | MS.gene41679 | 0.809444 | 1.89E-50 | -1.69E-46 |
MS.gene051247 | MS.gene41679 | 0.821072 | 4.90E-53 | -1.69E-46 |
MS.gene051279 | MS.gene41679 | 0.805429 | 1.34E-49 | -1.69E-46 |
MS.gene051328 | MS.gene41679 | 0.872199 | 3.82E-67 | -1.69E-46 |
MS.gene051577 | MS.gene41679 | 0.802731 | 4.88E-49 | -1.69E-46 |
MS.gene05157 | MS.gene41679 | 0.875516 | 2.90E-68 | -1.69E-46 |
MS.gene051700 | MS.gene41679 | 0.809799 | 1.58E-50 | -1.69E-46 |
MS.gene051719 | MS.gene41679 | 0.85421 | 1.43E-61 | -1.69E-46 |
MS.gene051720 | MS.gene41679 | 0.829214 | 5.84E-55 | -1.69E-46 |
MS.gene051744 | MS.gene41679 | 0.860222 | 2.40E-63 | -1.69E-46 |
MS.gene052012 | MS.gene41679 | 0.821159 | 4.68E-53 | -1.69E-46 |
MS.gene052020 | MS.gene41679 | 0.848735 | 5.07E-60 | -1.69E-46 |
MS.gene052133 | MS.gene41679 | 0.821481 | 3.95E-53 | -1.69E-46 |
MS.gene05215 | MS.gene41679 | 0.828576 | 8.33E-55 | -1.69E-46 |
MS.gene052323 | MS.gene41679 | 0.832901 | 7.26E-56 | -1.69E-46 |
MS.gene052397 | MS.gene41679 | 0.80978 | 1.60E-50 | -1.69E-46 |
MS.gene052516 | MS.gene41679 | 0.869148 | 3.85E-66 | -1.69E-46 |
MS.gene052519 | MS.gene41679 | 0.814053 | 1.87E-51 | -1.69E-46 |
MS.gene052582 | MS.gene41679 | 0.80375 | 3.00E-49 | -1.69E-46 |
MS.gene052584 | MS.gene41679 | 0.802998 | 4.30E-49 | -1.69E-46 |
MS.gene052611 | MS.gene41679 | 0.85207 | 5.87E-61 | -1.69E-46 |
MS.gene052612 | MS.gene41679 | 0.820069 | 8.33E-53 | -1.69E-46 |
MS.gene052665 | MS.gene41679 | 0.859337 | 4.43E-63 | -1.69E-46 |
MS.gene052773 | MS.gene41679 | 0.819007 | 1.46E-52 | -1.69E-46 |
MS.gene052863 | MS.gene41679 | 0.841642 | 4.20E-58 | -1.69E-46 |
MS.gene052879 | MS.gene41679 | 0.800556 | 1.36E-48 | -1.69E-46 |
MS.gene052896 | MS.gene41679 | 0.825923 | 3.60E-54 | -1.69E-46 |
MS.gene053008 | MS.gene41679 | 0.862186 | 6.05E-64 | -1.69E-46 |
MS.gene053079 | MS.gene41679 | 0.837021 | 6.64E-57 | -1.69E-46 |
MS.gene053144 | MS.gene41679 | 0.845787 | 3.27E-59 | -1.69E-46 |
MS.gene053174 | MS.gene41679 | 0.820179 | 7.86E-53 | -1.69E-46 |
MS.gene053226 | MS.gene41679 | 0.880969 | 3.54E-70 | -1.69E-46 |
MS.gene053565 | MS.gene41679 | 0.810894 | 9.19E-51 | -1.69E-46 |
MS.gene053581 | MS.gene41679 | 0.81067 | 1.03E-50 | -1.69E-46 |
MS.gene053599 | MS.gene41679 | 0.823566 | 1.29E-53 | -1.69E-46 |
MS.gene05364 | MS.gene41679 | 0.838074 | 3.57E-57 | -1.69E-46 |
MS.gene053998 | MS.gene41679 | 0.801768 | 7.71E-49 | -1.69E-46 |
MS.gene054472 | MS.gene41679 | 0.809627 | 1.72E-50 | -1.69E-46 |
MS.gene054550 | MS.gene41679 | 0.828244 | 1.00E-54 | -1.69E-46 |
MS.gene054584 | MS.gene41679 | 0.84023 | 9.85E-58 | -1.69E-46 |
MS.gene05458 | MS.gene41679 | 0.805678 | 1.19E-49 | -1.69E-46 |
MS.gene05462 | MS.gene41679 | 0.817018 | 4.10E-52 | -1.69E-46 |
MS.gene054651 | MS.gene41679 | 0.839021 | 2.03E-57 | -1.69E-46 |
MS.gene054657 | MS.gene41679 | 0.808447 | 3.08E-50 | -1.69E-46 |
MS.gene054658 | MS.gene41679 | 0.806559 | 7.76E-50 | -1.69E-46 |
MS.gene054775 | MS.gene41679 | 0.812892 | 3.37E-51 | -1.69E-46 |
MS.gene05478 | MS.gene41679 | 0.808311 | 3.30E-50 | -1.69E-46 |
MS.gene05517 | MS.gene41679 | 0.807824 | 4.19E-50 | -1.69E-46 |
MS.gene055227 | MS.gene41679 | 0.810135 | 1.34E-50 | -1.69E-46 |
MS.gene055465 | MS.gene41679 | 0.835869 | 1.31E-56 | -1.69E-46 |
MS.gene055466 | MS.gene41679 | 0.838612 | 2.59E-57 | -1.69E-46 |
MS.gene055468 | MS.gene41679 | 0.829017 | 6.51E-55 | -1.69E-46 |
MS.gene055469 | MS.gene41679 | 0.80685 | 6.73E-50 | -1.69E-46 |
MS.gene055512 | MS.gene41679 | 0.977232 | 2.27E-143 | -1.69E-46 |
MS.gene055513 | MS.gene41679 | 0.816073 | 6.67E-52 | -1.69E-46 |
MS.gene055580 | MS.gene41679 | -0.82821 | 1.02E-54 | -1.69E-46 |
MS.gene055623 | MS.gene41679 | 0.805659 | 1.20E-49 | -1.69E-46 |
MS.gene055778 | MS.gene41679 | 0.811547 | 6.63E-51 | -1.69E-46 |
MS.gene055818 | MS.gene41679 | 0.810923 | 9.05E-51 | -1.69E-46 |
MS.gene055890 | MS.gene41679 | 0.821297 | 4.35E-53 | -1.69E-46 |
MS.gene055891 | MS.gene41679 | 0.819277 | 1.26E-52 | -1.69E-46 |
MS.gene055926 | MS.gene41679 | 0.810741 | 9.91E-51 | -1.69E-46 |
MS.gene056043 | MS.gene41679 | -0.812972 | 3.24E-51 | -1.69E-46 |
MS.gene05604 | MS.gene41679 | 0.808155 | 3.56E-50 | -1.69E-46 |
MS.gene056050 | MS.gene41679 | 0.811571 | 6.55E-51 | -1.69E-46 |
MS.gene056173 | MS.gene41679 | 0.82075 | 5.81E-53 | -1.69E-46 |
MS.gene056181 | MS.gene41679 | 0.811941 | 5.44E-51 | -1.69E-46 |
MS.gene056308 | MS.gene41679 | 0.829239 | 5.75E-55 | -1.69E-46 |
MS.gene056366 | MS.gene41679 | 0.8414 | 4.86E-58 | -1.69E-46 |
MS.gene056432 | MS.gene41679 | 0.803639 | 3.17E-49 | -1.69E-46 |
MS.gene056506 | MS.gene41679 | 0.800069 | 1.71E-48 | -1.69E-46 |
MS.gene056507 | MS.gene41679 | 0.823588 | 1.28E-53 | -1.69E-46 |
MS.gene056553 | MS.gene41679 | 0.85219 | 5.43E-61 | -1.69E-46 |
MS.gene056643 | MS.gene41679 | 0.814393 | 1.58E-51 | -1.69E-46 |
MS.gene056760 | MS.gene41679 | 0.823392 | 1.42E-53 | -1.69E-46 |
MS.gene057034 | MS.gene41679 | 0.813142 | 2.97E-51 | -1.69E-46 |
MS.gene057057 | MS.gene41679 | 0.82066 | 6.10E-53 | -1.69E-46 |
MS.gene057060 | MS.gene41679 | 0.832151 | 1.11E-55 | -1.69E-46 |
MS.gene057140 | MS.gene41679 | 0.813558 | 2.41E-51 | -1.69E-46 |
MS.gene057314 | MS.gene41679 | 0.825935 | 3.57E-54 | -1.69E-46 |
MS.gene057444 | MS.gene41679 | 0.847152 | 1.39E-59 | -1.69E-46 |
MS.gene057446 | MS.gene41679 | 0.844803 | 6.03E-59 | -1.69E-46 |
MS.gene057693 | MS.gene41679 | 0.841252 | 5.32E-58 | -1.69E-46 |
MS.gene057869 | MS.gene41679 | 0.815555 | 8.71E-52 | -1.69E-46 |
MS.gene057915 | MS.gene41679 | 0.854945 | 8.78E-62 | -1.69E-46 |
MS.gene058009 | MS.gene41679 | 0.814615 | 1.41E-51 | -1.69E-46 |
MS.gene058010 | MS.gene41679 | 0.82694 | 2.06E-54 | -1.69E-46 |
MS.gene058084 | MS.gene41679 | 0.807891 | 4.05E-50 | -1.69E-46 |
MS.gene05847 | MS.gene41679 | 0.807163 | 5.78E-50 | -1.69E-46 |
MS.gene058548 | MS.gene41679 | 0.800443 | 1.44E-48 | -1.69E-46 |
MS.gene058625 | MS.gene41679 | 0.843585 | 1.28E-58 | -1.69E-46 |
MS.gene058636 | MS.gene41679 | 0.818647 | 1.76E-52 | -1.69E-46 |
MS.gene058829 | MS.gene41679 | 0.813826 | 2.10E-51 | -1.69E-46 |
MS.gene058906 | MS.gene41679 | 0.823253 | 1.53E-53 | -1.69E-46 |
MS.gene058979 | MS.gene41679 | 0.828082 | 1.10E-54 | -1.69E-46 |
MS.gene058982 | MS.gene41679 | 0.805581 | 1.25E-49 | -1.69E-46 |
MS.gene059725 | MS.gene41679 | 0.83412 | 3.60E-56 | -1.69E-46 |
MS.gene05978 | MS.gene41679 | 0.87347 | 1.43E-67 | -1.69E-46 |
MS.gene059842 | MS.gene41679 | 0.83427 | 3.30E-56 | -1.69E-46 |
MS.gene059937 | MS.gene41679 | 0.835289 | 1.83E-56 | -1.69E-46 |
MS.gene060194 | MS.gene41679 | 0.825689 | 4.09E-54 | -1.69E-46 |
MS.gene060310 | MS.gene41679 | 0.823028 | 1.73E-53 | -1.69E-46 |
MS.gene060322 | MS.gene41679 | 0.815279 | 1.00E-51 | -1.69E-46 |
MS.gene060355 | MS.gene41679 | 0.819893 | 9.14E-53 | -1.69E-46 |
MS.gene060429 | MS.gene41679 | 0.82213 | 2.79E-53 | -1.69E-46 |
MS.gene060470 | MS.gene41679 | 0.810453 | 1.14E-50 | -1.69E-46 |
MS.gene060587 | MS.gene41679 | 0.880063 | 7.47E-70 | -1.69E-46 |
MS.gene060637 | MS.gene41679 | 0.806187 | 9.29E-50 | -1.69E-46 |
MS.gene060803 | MS.gene41679 | 0.831674 | 1.46E-55 | -1.69E-46 |
MS.gene060884 | MS.gene41679 | 0.807546 | 4.79E-50 | -1.69E-46 |
MS.gene060886 | MS.gene41679 | 0.803248 | 3.82E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41679.t1 | MTR_3g099000 | 96.296 | 540 | 20 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1072 |
MS.gene41679.t1 | MTR_3g116120 | 28.409 | 528 | 258 | 12 | 9 | 524 | 50 | 469 | 2.50e-56 | 196 |
MS.gene41679.t1 | MTR_5g085170 | 27.324 | 527 | 245 | 11 | 7 | 524 | 22 | 419 | 1.14e-49 | 177 |
MS.gene41679.t1 | MTR_3g088480 | 27.072 | 543 | 325 | 15 | 15 | 525 | 170 | 673 | 4.20e-44 | 167 |
MS.gene41679.t1 | MTR_4g069830 | 28.571 | 287 | 175 | 5 | 16 | 290 | 139 | 407 | 2.36e-30 | 126 |
MS.gene41679.t1 | MTR_4g069830 | 28.571 | 287 | 175 | 5 | 16 | 290 | 139 | 407 | 2.40e-30 | 126 |
MS.gene41679.t1 | MTR_6g053260 | 43.860 | 114 | 58 | 1 | 2 | 115 | 17 | 124 | 2.28e-22 | 101 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41679.t1 | AT2G47620 | 49.353 | 541 | 234 | 11 | 1 | 534 | 1 | 508 | 2.11e-151 | 444 |
MS.gene41679.t1 | AT2G47620 | 50.605 | 413 | 169 | 8 | 1 | 410 | 1 | 381 | 3.88e-120 | 360 |
MS.gene41679.t1 | AT2G33610 | 26.336 | 524 | 281 | 10 | 7 | 527 | 39 | 460 | 5.20e-52 | 184 |
MS.gene41679.t1 | AT1G21700 | 27.462 | 528 | 328 | 17 | 15 | 527 | 175 | 662 | 4.12e-47 | 176 |
MS.gene41679.t1 | AT4G34430 | 26.689 | 296 | 178 | 4 | 15 | 295 | 144 | 415 | 2.79e-26 | 114 |
MS.gene41679.t1 | AT4G34430 | 26.689 | 296 | 178 | 4 | 15 | 295 | 144 | 415 | 2.79e-26 | 114 |
MS.gene41679.t1 | AT4G34430 | 26.689 | 296 | 178 | 4 | 15 | 295 | 144 | 415 | 2.87e-26 | 114 |
MS.gene41679.t1 | AT4G34430 | 26.689 | 296 | 178 | 4 | 15 | 295 | 144 | 415 | 2.94e-26 | 114 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATATTCTTTGTAGATTT+TGG | 0.062137 | 3.3:-81561425 | None:intergenic |
GAAATAGGCTTCAACGAATT+TGG | 0.175854 | 3.3:-81561697 | None:intergenic |
TCGAGTTCTGAATCTGAAAT+TGG | 0.191544 | 3.3:-81561216 | None:intergenic |
AACTCATTGAGCTGCCCTTT+GGG | 0.243008 | 3.3:+81563315 | MS.gene41679:CDS |
GTTCAATCTCTCTATCTTCT+TGG | 0.261575 | 3.3:-81571624 | None:intergenic |
CACTATTACTGTTATCATTT+CGG | 0.270449 | 3.3:-81563361 | None:intergenic |
CCTGTGTCATTGAAGTTTCT+TGG | 0.272832 | 3.3:-81563436 | None:intergenic |
CTGCCATTGGAACGGCTCTT+GGG | 0.282371 | 3.3:+81571569 | MS.gene41679:CDS |
GTATCCCGCGGCAACGAAAT+AGG | 0.302183 | 3.3:-81561712 | None:intergenic |
GATAACAGTAATAGTGTTAC+TGG | 0.321482 | 3.3:+81563368 | MS.gene41679:CDS |
CCCTTTGGGGAGCTCATGTT+AGG | 0.346283 | 3.3:+81563329 | MS.gene41679:CDS |
GCTGCCATTGGAACGGCTCT+TGG | 0.353657 | 3.3:+81571568 | MS.gene41679:CDS |
ATGGTGGTAGTGCTGGGAGC+GGG | 0.366820 | 3.3:+81561746 | MS.gene41679:CDS |
TGTGGTGATAAATGTGGTTC+TGG | 0.370702 | 3.3:+81561853 | MS.gene41679:CDS |
AAACTCATTGAGCTGCCCTT+TGG | 0.381346 | 3.3:+81563314 | MS.gene41679:CDS |
GTTGAGGAAGGTGCTCCTAA+TGG | 0.394494 | 3.3:+81561655 | MS.gene41679:CDS |
GCATCGTATTCAGATGTTTA+CGG | 0.394898 | 3.3:+81561793 | MS.gene41679:CDS |
CGCCTTCTGCTGGTGACGGT+GGG | 0.398334 | 3.3:+81561590 | MS.gene41679:CDS |
GGTAGTGCTGGGAGCGGGGT+TGG | 0.399459 | 3.3:+81561751 | MS.gene41679:CDS |
TGAATGAAAATCCTTCAAAA+AGG | 0.402501 | 3.3:+81563507 | MS.gene41679:CDS |
TTAAATCTGGTGTCGCTAGA+TGG | 0.405889 | 3.3:+81571934 | MS.gene41679:CDS |
GCTGCAGCAGCTGTGATATG+AGG | 0.409519 | 3.3:-81564054 | None:intergenic |
AGCAACTATAATTGATGCTC+AGG | 0.419562 | 3.3:+81571654 | MS.gene41679:CDS |
AACAGAGAAAGCCGCATTCA+AGG | 0.419615 | 3.3:+81561369 | MS.gene41679:CDS |
TGCTGGTGACGGTGGGGAAG+CGG | 0.423290 | 3.3:+81561597 | MS.gene41679:CDS |
GTGAATGTTAACCTTCTAGA+AGG | 0.426633 | 3.3:-81561478 | None:intergenic |
CTGCTTCATTAGTGAACTGC+TGG | 0.426983 | 3.3:-81563555 | None:intergenic |
ATTGCTGATGGTGGTAGTGC+TGG | 0.428983 | 3.3:+81561739 | MS.gene41679:CDS |
GGAGAAGGAACACGCTGAAA+TGG | 0.441692 | 3.3:+81571857 | MS.gene41679:CDS |
CGAGTTCTGAATCTGAAATT+GGG | 0.442640 | 3.3:-81561215 | None:intergenic |
GTGCCAACCACACTGCTGTC+TGG | 0.444849 | 3.3:+81563183 | MS.gene41679:CDS |
TTGAGGAAGGTGCTCCTAAT+GGG | 0.445261 | 3.3:+81561656 | MS.gene41679:CDS |
AGAGGAGCGGTGTAAGTTGA+AGG | 0.454875 | 3.3:+81561633 | MS.gene41679:CDS |
TGATTTGATTCGACGTAAAG+AGG | 0.456139 | 3.3:+81561816 | MS.gene41679:CDS |
AACTACGGTGCGCCTTCTGC+TGG | 0.458132 | 3.3:+81561580 | MS.gene41679:CDS |
GCAACAACACGAATCCCATT+AGG | 0.458762 | 3.3:-81561670 | None:intergenic |
TGACGGTGGGGAAGCGGAGA+AGG | 0.465624 | 3.3:+81561603 | MS.gene41679:CDS |
GAACAATGGAAACAAAGTTC+AGG | 0.466829 | 3.3:+81563397 | MS.gene41679:CDS |
AACCCCAACGCTCCAAGAAA+AGG | 0.466969 | 3.3:-81561552 | None:intergenic |
TCAACATCAAATATATCCCT+TGG | 0.467931 | 3.3:-81564117 | None:intergenic |
ATCGCGAAGAACCTTCTAGA+AGG | 0.477685 | 3.3:+81561467 | MS.gene41679:CDS |
GATGGTGGTAGTGCTGGGAG+CGG | 0.482401 | 3.3:+81561745 | MS.gene41679:CDS |
GTCAGGGCTCTCGAGGCTGA+AGG | 0.483976 | 3.3:+81564287 | MS.gene41679:intron |
CATTGAAGTTTCTTGGTGAT+CGG | 0.484104 | 3.3:-81563429 | None:intergenic |
ACGGGAATTATGGGGAGAAA+AGG | 0.485836 | 3.3:+81563120 | MS.gene41679:CDS |
AATACATTCAAGTTTAGTCT+TGG | 0.490532 | 3.3:-81563288 | None:intergenic |
TTGCGGAAGACATTTAAATC+TGG | 0.491955 | 3.3:+81571921 | MS.gene41679:CDS |
CGTTGGGGTTTGATTAACTA+CGG | 0.494430 | 3.3:+81561565 | MS.gene41679:CDS |
GTGGAGGGGTCCACTCAATC+AGG | 0.498019 | 3.3:+81564320 | MS.gene41679:CDS |
TGCTGCACGAGCAAAGTTGT+TGG | 0.507153 | 3.3:+81571597 | MS.gene41679:CDS |
AGTGCTTACTGGAAGAGCTT+GGG | 0.513344 | 3.3:-81561251 | None:intergenic |
ATTTAATTTGAAATCCTCCA+TGG | 0.517576 | 3.3:-81563144 | None:intergenic |
GAGTGCTTACTGGAAGAGCT+TGG | 0.522921 | 3.3:-81561252 | None:intergenic |
CAGCAGTTCACTAATGAAGC+AGG | 0.523188 | 3.3:+81563556 | MS.gene41679:CDS |
GCGCCTTCTGCTGGTGACGG+TGG | 0.524490 | 3.3:+81561589 | MS.gene41679:CDS |
TGGTGTTAAAATTGCGCCGT+TGG | 0.524858 | 3.3:+81561771 | MS.gene41679:CDS |
CGACGTAAAGAGGTCAATTG+TGG | 0.526288 | 3.3:+81561826 | MS.gene41679:CDS |
GACGTAAAGAGGTCAATTGT+GGG | 0.526317 | 3.3:+81561827 | MS.gene41679:CDS |
CAACATCAAATATATCCCTT+GGG | 0.527017 | 3.3:-81564116 | None:intergenic |
TGCCATTGGAACGGCTCTTG+GGG | 0.528099 | 3.3:+81571570 | MS.gene41679:CDS |
GCTCTTATACGTAGTGTCAA+TGG | 0.528104 | 3.3:-81571547 | None:intergenic |
CACACTGCTGTCTGGACTGA+GGG | 0.532324 | 3.3:+81563191 | MS.gene41679:CDS |
GAAGCCTATTTCGTTGCCGC+GGG | 0.539844 | 3.3:+81561708 | MS.gene41679:CDS |
TGGTGGTAGTGCTGGGAGCG+GGG | 0.541162 | 3.3:+81561747 | MS.gene41679:CDS |
GTGATGAGAATTCGCTCCCA+AGG | 0.542135 | 3.3:+81564100 | MS.gene41679:CDS |
TGCACGAGCAAAGTTGTTGG+CGG | 0.551025 | 3.3:+81571600 | MS.gene41679:CDS |
GGTTGAGAAGTTGCAACAGA+AGG | 0.551352 | 3.3:+81571803 | MS.gene41679:intron |
TGAAGGTTTAGAGATGGTGG+AGG | 0.556011 | 3.3:+81564304 | MS.gene41679:CDS |
GGATATATTTGATGTTGAAG+AGG | 0.561648 | 3.3:+81564122 | MS.gene41679:CDS |
AGCGGAGAAGGAACATGAAG+AGG | 0.562741 | 3.3:+81561615 | MS.gene41679:CDS |
GCGGTGTAAGTTGAAGGTTG+AGG | 0.565042 | 3.3:+81561639 | MS.gene41679:CDS |
CTGCAGCAGCTGTGATATGA+GGG | 0.565802 | 3.3:-81564053 | None:intergenic |
ACTCATTGAGCTGCCCTTTG+GGG | 0.569298 | 3.3:+81563316 | MS.gene41679:CDS |
GGCTGAAGGTTTAGAGATGG+TGG | 0.570333 | 3.3:+81564301 | MS.gene41679:CDS |
AGCCCCAAGAGCCGTTCCAA+TGG | 0.577527 | 3.3:-81571572 | None:intergenic |
CCTAACATGAGCTCCCCAAA+GGG | 0.577653 | 3.3:-81563329 | None:intergenic |
GCCTTCTGCTGGTGACGGTG+GGG | 0.578188 | 3.3:+81561591 | MS.gene41679:CDS |
TGACGTCACTTTCTTGAACA+AGG | 0.580657 | 3.3:+81561525 | MS.gene41679:CDS |
GAAGGTTTAGAGATGGTGGA+GGG | 0.582672 | 3.3:+81564305 | MS.gene41679:CDS |
TCCCCACCGTCACCAGCAGA+AGG | 0.584174 | 3.3:-81561592 | None:intergenic |
CTACGTATAAGAGCTGCCAT+TGG | 0.589808 | 3.3:+81571556 | MS.gene41679:CDS |
AAGATTCTATCTTAACTGAA+CGG | 0.593295 | 3.3:+81571889 | MS.gene41679:CDS |
TATCTTTGTCAGGGCTCTCG+AGG | 0.594795 | 3.3:+81564280 | MS.gene41679:intron |
TTGCTGATGGTGGTAGTGCT+GGG | 0.596207 | 3.3:+81561740 | MS.gene41679:CDS |
AGTCCAGACAGCAGTGTGGT+TGG | 0.597006 | 3.3:-81563186 | None:intergenic |
GGTGCGCCTTCTGCTGGTGA+CGG | 0.597438 | 3.3:+81561586 | MS.gene41679:CDS |
TGATGAGAATTCGCTCCCAA+GGG | 0.601664 | 3.3:+81564101 | MS.gene41679:CDS |
TGAAGCCTATTTCGTTGCCG+CGG | 0.604522 | 3.3:+81561707 | MS.gene41679:CDS |
CGAGGCTGAAGGTTTAGAGA+TGG | 0.605211 | 3.3:+81564298 | MS.gene41679:CDS |
GCCTAACATGAGCTCCCCAA+AGG | 0.608377 | 3.3:-81563330 | None:intergenic |
CCAAGAAACTTCAATGACAC+AGG | 0.608710 | 3.3:+81563436 | MS.gene41679:CDS |
TGGACATTACCGAAGTAGCA+AGG | 0.608925 | 3.3:+81561873 | MS.gene41679:CDS |
TTTGAAGCATGGGGATGACT+GGG | 0.610350 | 3.3:+81563241 | MS.gene41679:CDS |
GGTGGGACTGCTCTCAACTG+TGG | 0.615676 | 3.3:+81564026 | MS.gene41679:intron |
GAGGTCAATTGTGGGAATTG+TGG | 0.618187 | 3.3:+81561835 | MS.gene41679:CDS |
TATAAGAGCTGCCATTGGAA+CGG | 0.624681 | 3.3:+81571561 | MS.gene41679:CDS |
GCATTCAAGGAGTATTTCGA+CGG | 0.625023 | 3.3:+81561382 | MS.gene41679:CDS |
CGGGATACGAAGATTGCTGA+TGG | 0.626607 | 3.3:+81561727 | MS.gene41679:CDS |
CCACACTGCTGTCTGGACTG+AGG | 0.629638 | 3.3:+81563190 | MS.gene41679:CDS |
TTATGGGGAGAAAAGGTCCA+TGG | 0.637503 | 3.3:+81563127 | MS.gene41679:CDS |
GGGAATTGTGGTGATAAATG+TGG | 0.639547 | 3.3:+81561847 | MS.gene41679:CDS |
TGTAAGTTGAAGGTTGAGGA+AGG | 0.646841 | 3.3:+81561643 | MS.gene41679:CDS |
GTTACTGGCATTGTGAACAA+TGG | 0.649639 | 3.3:+81563383 | MS.gene41679:CDS |
AGAAGGAACATGAAGAGGAG+CGG | 0.666643 | 3.3:+81561620 | MS.gene41679:CDS |
GATACGAAGATTGCTGATGG+TGG | 0.670531 | 3.3:+81561730 | MS.gene41679:CDS |
ACATCTGAATACGATGCCAA+CGG | 0.670745 | 3.3:-81561787 | None:intergenic |
GTCGAAATACTCCTTGAATG+CGG | 0.672398 | 3.3:-81561380 | None:intergenic |
CTGAACGGATTGATGTGTTG+CGG | 0.676867 | 3.3:+81571904 | MS.gene41679:CDS |
TCAGCAATCTTCGTATCCCG+CGG | 0.680115 | 3.3:-81561724 | None:intergenic |
CTTACTGGAAGAGCTTGGGA+TGG | 0.682997 | 3.3:-81561247 | None:intergenic |
AAGAGGATAATGCTTCAGCA+AGG | 0.686587 | 3.3:+81564139 | MS.gene41679:CDS |
GAGGTACGAAAATCACTCGT+CGG | 0.686796 | 3.3:+81561502 | MS.gene41679:CDS |
CCTCAGTCCAGACAGCAGTG+TGG | 0.701720 | 3.3:-81563190 | None:intergenic |
AAGGTTTAGAGATGGTGGAG+GGG | 0.704288 | 3.3:+81564306 | MS.gene41679:CDS |
TGGGGAGAAAAGGTCCATGG+AGG | 0.741307 | 3.3:+81563130 | MS.gene41679:CDS |
TAGAAGGTTAACATTCACCG+AGG | 0.759653 | 3.3:+81561483 | MS.gene41679:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 81561198 | 81571983 | 81561198 | ID=MS.gene41679 |
chr3.3 | mRNA | 81561198 | 81571983 | 81561198 | ID=MS.gene41679.t1;Parent=MS.gene41679 |
chr3.3 | exon | 81561198 | 81561264 | 81561198 | ID=MS.gene41679.t1.exon1;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81561198 | 81561264 | 81561198 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81561341 | 81561894 | 81561341 | ID=MS.gene41679.t1.exon2;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81561341 | 81561894 | 81561341 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81563086 | 81563577 | 81563086 | ID=MS.gene41679.t1.exon3;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81563086 | 81563577 | 81563086 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81564027 | 81564160 | 81564027 | ID=MS.gene41679.t1.exon4;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81564027 | 81564160 | 81564027 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81564292 | 81564341 | 81564292 | ID=MS.gene41679.t1.exon5;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81564292 | 81564341 | 81564292 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81571530 | 81571675 | 81571530 | ID=MS.gene41679.t1.exon6;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81571530 | 81571675 | 81571530 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
chr3.3 | exon | 81571804 | 81571983 | 81571804 | ID=MS.gene41679.t1.exon7;Parent=MS.gene41679.t1 |
chr3.3 | CDS | 81571804 | 81571983 | 81571804 | ID=cds.MS.gene41679.t1;Parent=MS.gene41679.t1 |
Gene Sequence |
Protein sequence |