Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24608.t1 | XP_013468183.1 | 96.6 | 883 | 29 | 1 | 1 | 882 | 82 | 964 | 0.00E+00 | 1368.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24608.t1 | P78316 | 27.8 | 888 | 533 | 14 | 2 | 879 | 68 | 857 | 3.7e-43 | 178.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24608.t1 | A0A072VVU7 | 96.6 | 883 | 29 | 1 | 1 | 882 | 82 | 964 | 0.0e+00 | 1368.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene24608 | 0.807303 | 5.40E-50 | -1.69E-46 |
MS.gene049159 | MS.gene24608 | 0.845083 | 5.07E-59 | -1.69E-46 |
MS.gene049254 | MS.gene24608 | 0.806638 | 7.46E-50 | -1.69E-46 |
MS.gene049666 | MS.gene24608 | 0.811353 | 7.31E-51 | -1.69E-46 |
MS.gene049821 | MS.gene24608 | 0.833906 | 4.07E-56 | -1.69E-46 |
MS.gene049824 | MS.gene24608 | 0.811264 | 7.64E-51 | -1.69E-46 |
MS.gene049825 | MS.gene24608 | 0.838783 | 2.34E-57 | -1.69E-46 |
MS.gene049850 | MS.gene24608 | 0.81373 | 2.21E-51 | -1.69E-46 |
MS.gene049873 | MS.gene24608 | 0.840413 | 8.83E-58 | -1.69E-46 |
MS.gene050303 | MS.gene24608 | 0.814739 | 1.32E-51 | -1.69E-46 |
MS.gene050355 | MS.gene24608 | 0.808792 | 2.60E-50 | -1.69E-46 |
MS.gene050559 | MS.gene24608 | 0.801119 | 1.05E-48 | -1.69E-46 |
MS.gene051198 | MS.gene24608 | 0.82367 | 1.22E-53 | -1.69E-46 |
MS.gene051247 | MS.gene24608 | 0.80625 | 9.01E-50 | -1.69E-46 |
MS.gene05134 | MS.gene24608 | 0.824767 | 6.75E-54 | -1.69E-46 |
MS.gene051363 | MS.gene24608 | 0.81138 | 7.21E-51 | -1.69E-46 |
MS.gene051700 | MS.gene24608 | 0.819997 | 8.65E-53 | -1.69E-46 |
MS.gene051719 | MS.gene24608 | 0.800878 | 1.17E-48 | -1.69E-46 |
MS.gene051720 | MS.gene24608 | 0.804649 | 1.95E-49 | -1.69E-46 |
MS.gene05188 | MS.gene24608 | 0.846566 | 2.00E-59 | -1.69E-46 |
MS.gene051975 | MS.gene24608 | 0.810435 | 1.15E-50 | -1.69E-46 |
MS.gene052012 | MS.gene24608 | 0.800817 | 1.21E-48 | -1.69E-46 |
MS.gene052519 | MS.gene24608 | 0.839054 | 1.99E-57 | -1.69E-46 |
MS.gene052582 | MS.gene24608 | 0.815591 | 8.55E-52 | -1.69E-46 |
MS.gene052584 | MS.gene24608 | 0.827406 | 1.59E-54 | -1.69E-46 |
MS.gene052863 | MS.gene24608 | 0.803528 | 3.34E-49 | -1.69E-46 |
MS.gene052867 | MS.gene24608 | 0.80334 | 3.65E-49 | -1.69E-46 |
MS.gene052947 | MS.gene24608 | 0.809459 | 1.87E-50 | -1.69E-46 |
MS.gene053008 | MS.gene24608 | 0.824939 | 6.15E-54 | -1.69E-46 |
MS.gene053080 | MS.gene24608 | 0.835136 | 2.00E-56 | -1.69E-46 |
MS.gene05308 | MS.gene24608 | 0.827015 | 1.98E-54 | -1.69E-46 |
MS.gene053122 | MS.gene24608 | 0.838695 | 2.47E-57 | -1.69E-46 |
MS.gene053226 | MS.gene24608 | 0.869946 | 2.11E-66 | -1.69E-46 |
MS.gene05364 | MS.gene24608 | 0.816567 | 5.17E-52 | -1.69E-46 |
MS.gene054328 | MS.gene24608 | 0.804728 | 1.88E-49 | -1.69E-46 |
MS.gene05458 | MS.gene24608 | 0.817557 | 3.10E-52 | -1.69E-46 |
MS.gene054651 | MS.gene24608 | 0.834268 | 3.31E-56 | -1.69E-46 |
MS.gene054657 | MS.gene24608 | 0.806924 | 6.49E-50 | -1.69E-46 |
MS.gene054658 | MS.gene24608 | 0.802005 | 6.89E-49 | -1.69E-46 |
MS.gene054775 | MS.gene24608 | 0.831205 | 1.90E-55 | -1.69E-46 |
MS.gene05517 | MS.gene24608 | 0.832578 | 8.72E-56 | -1.69E-46 |
MS.gene055466 | MS.gene24608 | 0.804844 | 1.78E-49 | -1.69E-46 |
MS.gene055468 | MS.gene24608 | 0.800404 | 1.46E-48 | -1.69E-46 |
MS.gene055512 | MS.gene24608 | 0.805658 | 1.20E-49 | -1.69E-46 |
MS.gene055555 | MS.gene24608 | 0.800959 | 1.13E-48 | -1.69E-46 |
MS.gene055623 | MS.gene24608 | 0.802044 | 6.76E-49 | -1.69E-46 |
MS.gene055778 | MS.gene24608 | 0.811285 | 7.56E-51 | -1.69E-46 |
MS.gene055808 | MS.gene24608 | 0.84207 | 3.24E-58 | -1.69E-46 |
MS.gene055818 | MS.gene24608 | 0.809637 | 1.71E-50 | -1.69E-46 |
MS.gene055841 | MS.gene24608 | 0.812522 | 4.06E-51 | -1.69E-46 |
MS.gene056050 | MS.gene24608 | 0.803651 | 3.15E-49 | -1.69E-46 |
MS.gene056091 | MS.gene24608 | 0.800697 | 1.28E-48 | -1.69E-46 |
MS.gene056174 | MS.gene24608 | 0.806293 | 8.83E-50 | -1.69E-46 |
MS.gene056215 | MS.gene24608 | 0.843493 | 1.35E-58 | -1.69E-46 |
MS.gene056366 | MS.gene24608 | 0.809927 | 1.49E-50 | -1.69E-46 |
MS.gene056403 | MS.gene24608 | 0.805468 | 1.32E-49 | -1.69E-46 |
MS.gene056595 | MS.gene24608 | 0.833974 | 3.92E-56 | -1.69E-46 |
MS.gene05689 | MS.gene24608 | 0.81471 | 1.34E-51 | -1.69E-46 |
MS.gene057208 | MS.gene24608 | 0.832775 | 7.80E-56 | -1.69E-46 |
MS.gene057414 | MS.gene24608 | 0.801761 | 7.73E-49 | -1.69E-46 |
MS.gene057444 | MS.gene24608 | 0.81306 | 3.10E-51 | -1.69E-46 |
MS.gene057693 | MS.gene24608 | 0.80875 | 2.66E-50 | -1.69E-46 |
MS.gene057705 | MS.gene24608 | 0.810003 | 1.43E-50 | -1.69E-46 |
MS.gene057915 | MS.gene24608 | 0.819205 | 1.31E-52 | -1.69E-46 |
MS.gene058037 | MS.gene24608 | 0.807901 | 4.03E-50 | -1.69E-46 |
MS.gene058548 | MS.gene24608 | 0.823881 | 1.09E-53 | -1.69E-46 |
MS.gene058549 | MS.gene24608 | 0.803908 | 2.78E-49 | -1.69E-46 |
MS.gene058625 | MS.gene24608 | 0.837794 | 4.21E-57 | -1.69E-46 |
MS.gene058781 | MS.gene24608 | 0.820185 | 7.84E-53 | -1.69E-46 |
MS.gene058783 | MS.gene24608 | 0.855149 | 7.66E-62 | -1.69E-46 |
MS.gene058979 | MS.gene24608 | 0.815168 | 1.06E-51 | -1.69E-46 |
MS.gene059317 | MS.gene24608 | 0.804148 | 2.48E-49 | -1.69E-46 |
MS.gene05954 | MS.gene24608 | 0.847581 | 1.06E-59 | -1.69E-46 |
MS.gene059625 | MS.gene24608 | 0.832285 | 1.03E-55 | -1.69E-46 |
MS.gene05978 | MS.gene24608 | 0.807675 | 4.50E-50 | -1.69E-46 |
MS.gene05979 | MS.gene24608 | 0.815752 | 7.87E-52 | -1.69E-46 |
MS.gene059842 | MS.gene24608 | 0.862882 | 3.70E-64 | -1.69E-46 |
MS.gene059935 | MS.gene24608 | 0.847173 | 1.37E-59 | -1.69E-46 |
MS.gene060310 | MS.gene24608 | 0.802181 | 6.34E-49 | -1.69E-46 |
MS.gene060365 | MS.gene24608 | 0.832403 | 9.64E-56 | -1.69E-46 |
MS.gene060429 | MS.gene24608 | 0.872251 | 3.67E-67 | -1.69E-46 |
MS.gene060521 | MS.gene24608 | 0.808107 | 3.64E-50 | -1.69E-46 |
MS.gene060586 | MS.gene24608 | 0.831747 | 1.40E-55 | -1.69E-46 |
MS.gene060763 | MS.gene24608 | 0.80348 | 3.42E-49 | -1.69E-46 |
MS.gene060803 | MS.gene24608 | 0.8101 | 1.36E-50 | -1.69E-46 |
MS.gene060830 | MS.gene24608 | 0.812054 | 5.14E-51 | -1.69E-46 |
MS.gene060935 | MS.gene24608 | 0.830944 | 2.21E-55 | -1.69E-46 |
MS.gene060937 | MS.gene24608 | 0.809604 | 1.74E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCGTTCATCACTTCCTTCT+TGG | 0.196187 | 1.2:-49141467 | None:intergenic |
TCTTCACTACTGACAGTTTC+AGG | 0.214470 | 1.2:+49146342 | MS.gene24608:CDS |
CTGCCAGTTATATCATCTTA+TGG | 0.216501 | 1.2:+49146217 | MS.gene24608:intron |
AAAATTGGTGAAAATATTTC+TGG | 0.216827 | 1.2:-49146727 | None:intergenic |
TGAAGAAACTATGACTAAAA+AGG | 0.225009 | 1.2:+49142573 | MS.gene24608:CDS |
TCCTCCAACGACTATCTTCT+TGG | 0.257256 | 1.2:-49142968 | None:intergenic |
ATCAATAAACTCGGAAGATT+TGG | 0.263610 | 1.2:-49139177 | None:intergenic |
GATGAAGGCCTTGATGATTT+TGG | 0.264737 | 1.2:+49139218 | MS.gene24608:CDS |
TTCAAAGCTTTCATCTTGTT+TGG | 0.273827 | 1.2:-49141713 | None:intergenic |
GCAGAAGTTGATAAGGTAAA+AGG | 0.285083 | 1.2:+49142865 | MS.gene24608:CDS |
TCAAGTAGTAATCTCAAAAT+TGG | 0.299845 | 1.2:-49146742 | None:intergenic |
TTCGGAGCTTCAATTATATA+AGG | 0.299927 | 1.2:-49143015 | None:intergenic |
AGAATACTACTTTGAAAGAT+TGG | 0.304400 | 1.2:+49142737 | MS.gene24608:CDS |
ATATCACGGCCAGATGTTAT+TGG | 0.309858 | 1.2:-49144356 | None:intergenic |
GCACATATTGCAGCAAAGTA+TGG | 0.315156 | 1.2:-49144030 | None:intergenic |
TTTGCAGATATTTCAGATTT+GGG | 0.328110 | 1.2:+49141122 | MS.gene24608:intron |
AAAGTTTGAATAAATACTAT+TGG | 0.330563 | 1.2:-49145351 | None:intergenic |
TGAATAAATACTATTGGTTC+AGG | 0.334462 | 1.2:-49145345 | None:intergenic |
TTCTTGATGCAGCTATGTTA+AGG | 0.339589 | 1.2:+49147044 | MS.gene24608:intron |
CAAGAACATGCTTTCAAATC+TGG | 0.340841 | 1.2:+49147264 | MS.gene24608:CDS |
CTTTCAGCTCGCACACAGTC+TGG | 0.351164 | 1.2:-49147081 | None:intergenic |
TTCAGTAATTTGATTGGAAC+TGG | 0.357854 | 1.2:-49146892 | None:intergenic |
AAGCATGTTCTTGCTCTTGA+AGG | 0.361044 | 1.2:-49147254 | None:intergenic |
TGACCAACTTGTCAGACAAT+TGG | 0.376534 | 1.2:+49141927 | MS.gene24608:CDS |
TTCGCGCTGCGATCTCAAAA+TGG | 0.380427 | 1.2:-49139246 | None:intergenic |
TTAGGATTCAGTAATTTGAT+TGG | 0.384079 | 1.2:-49146898 | None:intergenic |
AAAATATGCCAAATGCATTA+CGG | 0.387295 | 1.2:+49146779 | MS.gene24608:CDS |
GACAATGAATAATTCTGTTC+AGG | 0.394333 | 1.2:+49141799 | MS.gene24608:CDS |
AGGTAAAAGGATTGAATGTT+GGG | 0.395632 | 1.2:+49142878 | MS.gene24608:CDS |
AGTATCACAGGAGTCATAAC+TGG | 0.397195 | 1.2:-49144305 | None:intergenic |
AAGGTAAAAGGATTGAATGT+TGG | 0.397569 | 1.2:+49142877 | MS.gene24608:CDS |
AAAGCAAGAGCTGAGAAGTA+TGG | 0.398033 | 1.2:+49147216 | MS.gene24608:CDS |
AAACAAGATGAAAGCTTTGA+AGG | 0.398300 | 1.2:+49141715 | MS.gene24608:CDS |
GGAAGTGTAAAGGGAGATAA+TGG | 0.398968 | 1.2:+49142934 | MS.gene24608:CDS |
ATTACTGAATCCTAAGTTTG+AGG | 0.398976 | 1.2:+49146906 | MS.gene24608:CDS |
GTGAAGAATGGAGAGTCTTC+AGG | 0.403043 | 1.2:-49146326 | None:intergenic |
GATTCTGTTGGAAGTGTAAA+GGG | 0.404106 | 1.2:+49142925 | MS.gene24608:CDS |
TCTTGATGCAGCTATGTTAA+GGG | 0.404207 | 1.2:+49147045 | MS.gene24608:intron |
GATGAATTTGAAGGAATTGA+TGG | 0.414203 | 1.2:+49140803 | MS.gene24608:CDS |
AAATATGCCAAATGCATTAC+GGG | 0.415102 | 1.2:+49146780 | MS.gene24608:CDS |
TTTGAAGGAATTGATGGTCT+TGG | 0.415825 | 1.2:+49140809 | MS.gene24608:CDS |
TCCGTACTCATCTCTATCAA+TGG | 0.415890 | 1.2:-49144003 | None:intergenic |
GAGTTTATTGATAGAAGAAT+TGG | 0.416122 | 1.2:+49139188 | MS.gene24608:CDS |
GAGATCGCAGCGCGAACGTC+AGG | 0.416574 | 1.2:+49139253 | MS.gene24608:CDS |
CGCTGTGTCTCTTGCGATTG+TGG | 0.416722 | 1.2:+49144249 | MS.gene24608:CDS |
AGGTGAGGCGTGAAGCTAAA+GGG | 0.417578 | 1.2:+49147121 | MS.gene24608:CDS |
GAATACTACTTTGAAAGATT+GGG | 0.420352 | 1.2:+49142738 | MS.gene24608:CDS |
TATCACGGCCAGATGTTATT+GGG | 0.421115 | 1.2:-49144355 | None:intergenic |
TCATCACCAGAGAGAGATCT+TGG | 0.422739 | 1.2:-49142526 | None:intergenic |
ACAAGTTGGTCATATTCATC+TGG | 0.423674 | 1.2:-49141916 | None:intergenic |
TCCTCATTAATGCGCAATAG+TGG | 0.429661 | 1.2:-49146257 | None:intergenic |
CATAATTCTTCAAAGGTCTT+CGG | 0.431108 | 1.2:-49143033 | None:intergenic |
TGAGAGAAGAGATGAGGAGG+AGG | 0.431745 | 1.2:+49142615 | MS.gene24608:CDS |
AGGCATTGATATATCCTTGT+AGG | 0.432380 | 1.2:-49146684 | None:intergenic |
CATAACTGGATGTCTAAAAT+CGG | 0.433346 | 1.2:-49144291 | None:intergenic |
GAAGATGATGATGAATTTGA+AGG | 0.433623 | 1.2:+49140794 | MS.gene24608:CDS |
GACCAACTTGTCAGACAATT+GGG | 0.434843 | 1.2:+49141928 | MS.gene24608:CDS |
AAGAGCTGCAGAAGTTGATA+AGG | 0.435279 | 1.2:+49142858 | MS.gene24608:CDS |
AAATCTGGACAACTAGGAAA+AGG | 0.438682 | 1.2:+49147279 | MS.gene24608:CDS |
AGATAAGGACTTCACTTCTC+TGG | 0.442591 | 1.2:+49141658 | MS.gene24608:CDS |
TATATCATGCGAAAATTCTC+AGG | 0.447408 | 1.2:+49145401 | MS.gene24608:CDS |
GATGAAAGCTTTGAAGGCTC+TGG | 0.454907 | 1.2:+49141721 | MS.gene24608:CDS |
AAGAGAACGTCTAGAGGAGT+TGG | 0.457721 | 1.2:+49142014 | MS.gene24608:CDS |
TGATATATGTTTACTTTCAG+TGG | 0.466596 | 1.2:-49145385 | None:intergenic |
TCTTAATCATCAATCGGATT+CGG | 0.468845 | 1.2:+49143091 | MS.gene24608:CDS |
ACTTTGAAGATGAGATGCTT+GGG | 0.474875 | 1.2:+49140840 | MS.gene24608:CDS |
GAACGAACTCAAGTTATCAT+AGG | 0.478056 | 1.2:-49146704 | None:intergenic |
AAGATAGCTTGTCTGCTAAA+CGG | 0.481368 | 1.2:+49141777 | MS.gene24608:CDS |
CTTTGAAGAATTATGTTCAC+TGG | 0.483060 | 1.2:+49143041 | MS.gene24608:CDS |
CTACTTCTTGCTTGATGTGA+AGG | 0.483308 | 1.2:+49147170 | MS.gene24608:CDS |
ACACTATCTTAATCATCAAT+CGG | 0.489425 | 1.2:+49143085 | MS.gene24608:CDS |
ATCCCAATTGTCTGACAAGT+TGG | 0.491655 | 1.2:-49141930 | None:intergenic |
GCAAAGAGAAATGATTCTGT+TGG | 0.491781 | 1.2:+49142913 | MS.gene24608:CDS |
AAATTGGTGAAAATATTTCT+GGG | 0.493600 | 1.2:-49146726 | None:intergenic |
GGCATTGATATATCCTTGTA+GGG | 0.493842 | 1.2:-49146683 | None:intergenic |
ATGCAGAGTCCAGGGGAAGC+TGG | 0.497735 | 1.2:+49141167 | MS.gene24608:CDS |
TCTTGAGAGAAGAGATGAGG+AGG | 0.501654 | 1.2:+49142612 | MS.gene24608:CDS |
GACTTTGAAGATGAGATGCT+TGG | 0.502031 | 1.2:+49140839 | MS.gene24608:CDS |
ATGCGTTGCCCAATAACATC+TGG | 0.502843 | 1.2:+49144347 | MS.gene24608:CDS |
GCCACTATTGCGCATTAATG+AGG | 0.509019 | 1.2:+49146256 | MS.gene24608:CDS |
GAGGTGAGGCGTGAAGCTAA+AGG | 0.509324 | 1.2:+49147120 | MS.gene24608:CDS |
TGGTGAAGATTCTGATGATT+CGG | 0.509906 | 1.2:+49142660 | MS.gene24608:CDS |
AAGCTGGTCTAGCTGACGGT+GGG | 0.510032 | 1.2:+49141183 | MS.gene24608:CDS |
AGGTCTGAAGATTCTGATGA+AGG | 0.511371 | 1.2:+49142685 | MS.gene24608:CDS |
GAGAAACCAAGATCTCTCTC+TGG | 0.511990 | 1.2:+49142520 | MS.gene24608:CDS |
GCTCATGGTATGCAGAGTCC+AGG | 0.514901 | 1.2:+49141158 | MS.gene24608:CDS |
TGATTCTGTTGGAAGTGTAA+AGG | 0.516796 | 1.2:+49142924 | MS.gene24608:CDS |
CACTTCTCTGGCTCATTCCG+AGG | 0.518270 | 1.2:+49141670 | MS.gene24608:CDS |
CAGATATTTCAGATTTGGGC+CGG | 0.519443 | 1.2:+49141126 | MS.gene24608:intron |
AATCTGGACAACTAGGAAAA+GGG | 0.524082 | 1.2:+49147280 | MS.gene24608:CDS |
AAACTGTCAGTAGTGAAGAA+TGG | 0.525835 | 1.2:-49146338 | None:intergenic |
TCAGCTAGACCAGCTTCCCC+TGG | 0.526667 | 1.2:-49141176 | None:intergenic |
AAGGAATTGATGGTCTTGGA+AGG | 0.527484 | 1.2:+49140813 | MS.gene24608:CDS |
CACATATTGCAGCAAAGTAT+GGG | 0.528243 | 1.2:-49144029 | None:intergenic |
GCTTTCAAATCTGGACAACT+AGG | 0.529239 | 1.2:+49147273 | MS.gene24608:CDS |
AGAATTGGTGAGAATGATGA+AGG | 0.533838 | 1.2:+49139203 | MS.gene24608:CDS |
GACAACAGAAGAGATTGCTC+AGG | 0.535238 | 1.2:+49141987 | MS.gene24608:CDS |
AGAACGTCTAGAGGAGTTGG+AGG | 0.537126 | 1.2:+49142017 | MS.gene24608:CDS |
GGCCGGCGTCATAATGCTCA+TGG | 0.540640 | 1.2:+49141143 | MS.gene24608:CDS |
AGTCAGAGACAACAAGGCCT+CGG | 0.545810 | 1.2:-49141687 | None:intergenic |
CTCATGGTATGCAGAGTCCA+GGG | 0.546926 | 1.2:+49141159 | MS.gene24608:CDS |
GATATCAGTGCAGGTTCAGA+AGG | 0.548400 | 1.2:+49142778 | MS.gene24608:CDS |
TCGCACATCAATAGTATCAC+AGG | 0.550865 | 1.2:-49144317 | None:intergenic |
AGACACAGCGTCTTTGAAGA+AGG | 0.550949 | 1.2:-49144236 | None:intergenic |
TGGATGAACATCATACTTTG+AGG | 0.551930 | 1.2:+49146842 | MS.gene24608:CDS |
TCTGGCCGTGATATTGCCGT+TGG | 0.558685 | 1.2:+49144365 | MS.gene24608:CDS |
TCTCTCTCTGGTGATGACCT+TGG | 0.559106 | 1.2:+49142532 | MS.gene24608:CDS |
GATACCAAGAAGATAGTCGT+TGG | 0.560935 | 1.2:+49142964 | MS.gene24608:CDS |
CTATCACAGAAAGTAGCAGC+TGG | 0.562254 | 1.2:+49144213 | MS.gene24608:intron |
AACAGAAGAGATTGCTCAGG+AGG | 0.562649 | 1.2:+49141990 | MS.gene24608:CDS |
TGAAGAATTATGTTCACTGG+TGG | 0.563978 | 1.2:+49143044 | MS.gene24608:CDS |
GGGGAAGCTGGTCTAGCTGA+CGG | 0.571066 | 1.2:+49141179 | MS.gene24608:CDS |
CCTGCTGGAAGGATTAGATA+AGG | 0.573153 | 1.2:+49141643 | MS.gene24608:CDS |
ACCATTGATAGAGATGAGTA+CGG | 0.573361 | 1.2:+49144002 | MS.gene24608:CDS |
GAAGCTGGTCTAGCTGACGG+TGG | 0.576068 | 1.2:+49141182 | MS.gene24608:CDS |
TCTCTTGCGATTGTGGTCCA+TGG | 0.576194 | 1.2:+49144256 | MS.gene24608:CDS |
GATTCTTGAGAGAAGAGATG+AGG | 0.577765 | 1.2:+49142609 | MS.gene24608:CDS |
GATGATGATGATATCAGTGC+AGG | 0.578213 | 1.2:+49142769 | MS.gene24608:CDS |
CAAGAGCTGAGAAGTATGGA+AGG | 0.580782 | 1.2:+49147220 | MS.gene24608:CDS |
ACCTCTGTTGAAACCCTACA+AGG | 0.581709 | 1.2:+49146670 | MS.gene24608:CDS |
ACGGGATAAAATTAAAGATG+TGG | 0.582762 | 1.2:+49146798 | MS.gene24608:CDS |
AGTTTCTTCATCGACAGAGA+AGG | 0.583142 | 1.2:-49142560 | None:intergenic |
TTCACTCGAATCTTCAGCAG+CGG | 0.584454 | 1.2:-49142464 | None:intergenic |
GGAGGAAAGAGAACGTCTAG+AGG | 0.587808 | 1.2:+49142008 | MS.gene24608:CDS |
TGGCTTTACCAAAATCATCA+AGG | 0.589222 | 1.2:-49139226 | None:intergenic |
AATTCTTCTATCAATAAACT+CGG | 0.589521 | 1.2:-49139186 | None:intergenic |
GTTGTCTTCAGCCTATCTGA+AGG | 0.592574 | 1.2:-49141970 | None:intergenic |
CAGTGAACATAATTCTTCAA+AGG | 0.594264 | 1.2:-49143040 | None:intergenic |
CCTTATCTAATCCTTCCAGC+AGG | 0.597560 | 1.2:-49141643 | None:intergenic |
ATCGGAACATGGAAATACCA+TGG | 0.602060 | 1.2:-49144273 | None:intergenic |
GAAGATGATGATATCAGTGC+TGG | 0.602350 | 1.2:+49142802 | MS.gene24608:CDS |
TACCATGAGCATTATGACGC+CGG | 0.604868 | 1.2:-49141145 | None:intergenic |
TCCTTGTAGGGTTTCAACAG+AGG | 0.609177 | 1.2:-49146671 | None:intergenic |
ACCAAGAAGATAGTCGTTGG+AGG | 0.610706 | 1.2:+49142967 | MS.gene24608:CDS |
AAGAACCAACGGCAATATCA+CGG | 0.614085 | 1.2:-49144370 | None:intergenic |
ACAGAGACATAAAACCAAGA+AGG | 0.615445 | 1.2:+49141453 | MS.gene24608:intron |
AAAGATGAAGACCTGCTGGA+AGG | 0.616144 | 1.2:+49141632 | MS.gene24608:CDS |
GGTGAGGCGTGAAGCTAAAG+GGG | 0.618945 | 1.2:+49147122 | MS.gene24608:CDS |
TGGTTCAGTCAGAGACAACA+AGG | 0.620464 | 1.2:-49141693 | None:intergenic |
TGCGTGCTCGTCCTTCAGAT+AGG | 0.623838 | 1.2:+49141959 | MS.gene24608:CDS |
AGATTCTGATGAAGGATCTG+AGG | 0.625208 | 1.2:+49142693 | MS.gene24608:CDS |
AGGAATTGATGGTCTTGGAA+GGG | 0.625979 | 1.2:+49140814 | MS.gene24608:CDS |
AGCTGGTCTAGCTGACGGTG+GGG | 0.637224 | 1.2:+49141184 | MS.gene24608:CDS |
GAGAGAAGAGATGAGGAGGA+GGG | 0.637619 | 1.2:+49142616 | MS.gene24608:CDS |
GAAGATGATGATGAAACTGA+TGG | 0.638682 | 1.2:+49140863 | MS.gene24608:CDS |
GGATGTCTAAAATCGGAACA+TGG | 0.639818 | 1.2:-49144284 | None:intergenic |
AAGATTCTGATGATTCGGAA+AGG | 0.644071 | 1.2:+49142665 | MS.gene24608:CDS |
TGAGCTGATTAAGTTGAAAG+TGG | 0.649315 | 1.2:+49146822 | MS.gene24608:CDS |
TGAGGCGACCACTTCAAATG+CGG | 0.651913 | 1.2:+49146860 | MS.gene24608:CDS |
TCTTCTAGTGAAGATGATGA+TGG | 0.654306 | 1.2:+49142640 | MS.gene24608:CDS |
AGAACATAAGAAAGAACCAA+CGG | 0.656060 | 1.2:-49144381 | None:intergenic |
CGACAGAGAAGGAATCGCCA+AGG | 0.671556 | 1.2:-49142549 | None:intergenic |
CTTTGAAGATGAGATGCTTG+GGG | 0.680980 | 1.2:+49140841 | MS.gene24608:CDS |
TCATGGTATGCAGAGTCCAG+GGG | 0.687360 | 1.2:+49141160 | MS.gene24608:CDS |
AGAAGATGAAGATGACGACG+AGG | 0.741278 | 1.2:+49142828 | MS.gene24608:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 49139142 | 49147320 | 49139142 | ID=MS.gene24608 |
chr1.2 | mRNA | 49139142 | 49147320 | 49139142 | ID=MS.gene24608.t1;Parent=MS.gene24608 |
chr1.2 | exon | 49139142 | 49139274 | 49139142 | ID=MS.gene24608.t1.exon1;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49139142 | 49139274 | 49139142 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49140749 | 49140884 | 49140749 | ID=MS.gene24608.t1.exon2;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49140749 | 49140884 | 49140749 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49141129 | 49141211 | 49141129 | ID=MS.gene24608.t1.exon3;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49141129 | 49141211 | 49141129 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49141457 | 49141516 | 49141457 | ID=MS.gene24608.t1.exon4;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49141457 | 49141516 | 49141457 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49141608 | 49141820 | 49141608 | ID=MS.gene24608.t1.exon5;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49141608 | 49141820 | 49141608 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49141910 | 49142038 | 49141910 | ID=MS.gene24608.t1.exon6;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49141910 | 49142038 | 49141910 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49142442 | 49143161 | 49142442 | ID=MS.gene24608.t1.exon7;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49142442 | 49143161 | 49142442 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49143916 | 49144108 | 49143916 | ID=MS.gene24608.t1.exon8;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49143916 | 49144108 | 49143916 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49144222 | 49144415 | 49144222 | ID=MS.gene24608.t1.exon9;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49144222 | 49144415 | 49144222 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49145318 | 49145422 | 49145318 | ID=MS.gene24608.t1.exon10;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49145318 | 49145422 | 49145318 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49146224 | 49146363 | 49146224 | ID=MS.gene24608.t1.exon11;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49146224 | 49146363 | 49146224 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49146654 | 49146932 | 49146654 | ID=MS.gene24608.t1.exon12;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49146654 | 49146932 | 49146654 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
chr1.2 | exon | 49147056 | 49147320 | 49147056 | ID=MS.gene24608.t1.exon13;Parent=MS.gene24608.t1 |
chr1.2 | CDS | 49147056 | 49147320 | 49147056 | ID=cds.MS.gene24608.t1;Parent=MS.gene24608.t1 |
Gene Sequence |
Protein sequence |