AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71826


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 134 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGTGTCTCTTCATTTC+TGG 0.080261 1.3:-75328564 MS.gene71826:intron
TGCATAGATGATTGCTTTAA+AGG 0.165421 1.3:-75328466 MS.gene71826:CDS
TGCAAATCAATTAAAGAAAA+TGG 0.219753 1.3:-75329391 MS.gene71826:CDS
ACCAGTATCTATGCTCCTTT+TGG 0.248004 1.3:-75327709 MS.gene71826:CDS
TTGTTGAAGCTTCCTGCTTC+TGG 0.303506 1.3:-75329202 MS.gene71826:CDS
TCAGGTGTCTCTTCATTTCT+GGG 0.315570 1.3:-75328563 MS.gene71826:intron
GAGTTACTCTGTTGGGTTCA+TGG 0.318367 1.3:-75327436 MS.gene71826:CDS
TAAAGTTATAACCACTTCTA+TGG 0.321812 1.3:-75329425 MS.gene71826:CDS
AAAATATTCTTCATTGTTGT+TGG 0.346316 1.3:-75329032 MS.gene71826:CDS
TCTCTTCATTTCTGGGGTAC+TGG 0.358919 1.3:-75328556 MS.gene71826:CDS
GAGCAATACTTGTCATTTCC+AGG 0.362820 1.3:+75326329 None:intergenic
AGTTCCATCCACGTTCTCTT+TGG 0.366087 1.3:+75326376 None:intergenic
TCATTAACTCTCTTGAGCTT+TGG 0.367280 1.3:-75327905 MS.gene71826:CDS
ACAAAACAATGGAGGACTTA+TGG 0.370348 1.3:-75329145 MS.gene71826:CDS
AGACAAAGCATAAAACAAAA+AGG 0.374855 1.3:-75325980 MS.gene71826:CDS
CTGTCCTAAAAGCCCTCATC+AGG 0.374975 1.3:+75329347 None:intergenic
GATGATGCCGCAGGATCATT+AGG 0.378915 1.3:+75327160 None:intergenic
CACTGTGGAGTTACTCTGTT+GGG 0.380617 1.3:-75327443 MS.gene71826:CDS
CAAGGTAGGACTTCACAATA+TGG 0.381844 1.3:+75329122 None:intergenic
AAAATTTCCAGTGTTCTTGT+TGG 0.383029 1.3:-75326470 MS.gene71826:intron
GTACCTTGATATATTTCCTT+AGG 0.386131 1.3:+75328993 None:intergenic
CGGCTAGGTACTTTCCCCTT+AGG 0.413546 1.3:-75327785 MS.gene71826:CDS
CATTTCTGGGGTACTGGTGG+AGG 0.417756 1.3:-75328550 MS.gene71826:CDS
CTTTGCCAATGCCTCCTGTA+GGG 0.419106 1.3:+75327655 None:intergenic
TCTTCGAAACCTTTCAACTT+TGG 0.426560 1.3:+75327365 None:intergenic
GTTTCACAGCATTTACGAAA+TGG 0.429053 1.3:+75328416 None:intergenic
GCAGAAGGGCTGTCGCTTGA+AGG 0.432094 1.3:+75326053 None:intergenic
AACTGCGTCATTGAACTTCT+CGG 0.432785 1.3:-75328370 MS.gene71826:CDS
GTTGACTGTACTTAATGAAA+TGG 0.436589 1.3:-75329242 MS.gene71826:CDS
GCAAATCAATTAAAGAAAAT+GGG 0.446925 1.3:-75329390 MS.gene71826:CDS
CCCTTAGGTTGAGATGTATC+CGG 0.448152 1.3:-75327770 MS.gene71826:CDS
TAGATACTGGTACAAAAGAA+TGG 0.450220 1.3:+75327721 None:intergenic
TTTAGGACAGCATGCCACTA+TGG 0.450538 1.3:-75329334 MS.gene71826:CDS
TCACTGAACTTAAGCAGATC+CGG 0.454118 1.3:+75330579 None:intergenic
TGATTTACGCAGCATATTGA+AGG 0.459394 1.3:-75327628 MS.gene71826:intron
TTGTGCATCTGTATTGGATC+TGG 0.460491 1.3:-75328490 MS.gene71826:CDS
TTTAGCTCATCCTGGTTACC+TGG 0.468220 1.3:-75326347 MS.gene71826:CDS
CAGCAATCTGGTTCAACATC+CGG 0.468912 1.3:+75327751 None:intergenic
CGCAGGATCATTAGGTAGAA+AGG 0.471731 1.3:+75327168 None:intergenic
TCAAGCGACAGCCCTTCTGC+CGG 0.472007 1.3:-75326050 MS.gene71826:CDS
AGGAATAAATCTCACACCTA+AGG 0.472641 1.3:-75325951 None:intergenic
AAGTTGCGCAACCTCACAAT+TGG 0.474304 1.3:+75327399 None:intergenic
TCCAAAAGGAGCATAGATAC+TGG 0.475479 1.3:+75327708 None:intergenic
CCACTTCTATGGTTGATTTG+TGG 0.479032 1.3:-75329414 MS.gene71826:CDS
CTTGTCATTTCCAGGTAACC+AGG 0.479894 1.3:+75326337 None:intergenic
CTTCATTTCTGGGGTACTGG+TGG 0.480769 1.3:-75328553 MS.gene71826:CDS
TGCGGTTCGTTCCCTGATGA+GGG 0.483874 1.3:-75329359 MS.gene71826:CDS
ATGAATAGACACGAAACAAC+AGG 0.485209 1.3:+75328520 None:intergenic
AATGGGTAGAAGCAGCAATC+TGG 0.490303 1.3:+75327739 None:intergenic
TGATGATGTTGTGGAGGACT+TGG 0.492880 1.3:-75326105 MS.gene71826:CDS
TGGAAGAAAAGAGATCATAA+TGG 0.493687 1.3:-75329179 MS.gene71826:CDS
ATGCGGTTCGTTCCCTGATG+AGG 0.495163 1.3:-75329360 MS.gene71826:CDS
AAGTGCATCCCTTAAAATCA+TGG 0.500234 1.3:+75328294 None:intergenic
AGAGAGTTGTGCATCTGTAT+TGG 0.501253 1.3:-75328496 MS.gene71826:CDS
CAAGCGACAGCCCTTCTGCC+GGG 0.504148 1.3:-75326049 MS.gene71826:CDS
GCTCCTAAGGAAATATATCA+AGG 0.505109 1.3:-75328996 MS.gene71826:intron
TCCGGATACATCTCAACCTA+AGG 0.506348 1.3:+75327769 None:intergenic
CTGCTGCATTTAGCTCATCC+TGG 0.510196 1.3:-75326355 MS.gene71826:CDS
GCAAATTGACCAAAGTTGAA+AGG 0.512230 1.3:-75327374 MS.gene71826:CDS
ACGACTCATTAAAGGAATCC+AGG 0.512258 1.3:-75326581 MS.gene71826:intron
TTGAAGCTTCCTGCTTCTGG+TGG 0.513192 1.3:-75329199 MS.gene71826:CDS
CAACAGCCTACTGAACCAAA+AGG 0.514963 1.3:-75326167 MS.gene71826:CDS
AGATACTGGTACAAAAGAAT+GGG 0.517124 1.3:+75327722 None:intergenic
CTCCACAACATCATCATCAA+TGG 0.522343 1.3:+75326112 None:intergenic
TTCTGTGGTTGAAGAACTTG+CGG 0.526193 1.3:-75327475 MS.gene71826:CDS
GTGGATGATGACATGGAAGA+TGG 0.527004 1.3:-75329514 MS.gene71826:CDS
CAGAGTAACTCCACAGTGCT+AGG 0.529878 1.3:+75327448 None:intergenic
AATGCCCGTGTCTTAAGAGT+TGG 0.530371 1.3:+75327516 None:intergenic
GAAATGGCAATTCAAAACAT+AGG 0.534559 1.3:+75328432 None:intergenic
TTTGCCAATGCCTCCTGTAG+GGG 0.535188 1.3:+75327656 None:intergenic
CAGTCATTTGATTCAAAATG+TGG 0.535572 1.3:+75329089 None:intergenic
GGAGGATACTAAAGAGAATG+AGG 0.540305 1.3:-75326402 MS.gene71826:CDS
CAGGTGTCTCTTCATTTCTG+GGG 0.543367 1.3:-75328562 MS.gene71826:CDS
GCTTTGCCAATGCCTCCTGT+AGG 0.545538 1.3:+75327654 None:intergenic
GCACTGTGGAGTTACTCTGT+TGG 0.548474 1.3:-75327444 MS.gene71826:CDS
GATTGAAGCAAAGCAACATA+AGG 0.549356 1.3:-75331278 MS.gene71826:CDS
ATATATTTCCTTAGGAGCGA+AGG 0.556004 1.3:+75329001 None:intergenic
TCTCATCATCATCACCATAG+TGG 0.557196 1.3:+75329320 None:intergenic
CACTGAACTTAAGCAGATCC+GGG 0.560310 1.3:+75330580 None:intergenic
TGATATCATTTACTTTACAT+CGG 0.560340 1.3:-75329057 MS.gene71826:CDS
TCATCTCCAGCATATCCAAA+AGG 0.562573 1.3:+75327694 None:intergenic
CCGGATACATCTCAACCTAA+GGG 0.564014 1.3:+75327770 None:intergenic
TTGCCAATGCCTCCTGTAGG+GGG 0.564018 1.3:+75327657 None:intergenic
CCTAGCCGTGGGAACTAGAC+GGG 0.565672 1.3:+75327800 None:intergenic
ATATTAGAGATTAATGTGGA+TGG 0.567480 1.3:-75331346 None:intergenic
CTACTGAACCAAAAGGAAAG+AGG 0.572500 1.3:-75326160 MS.gene71826:CDS
TGCCATTGATGATGATGTTG+TGG 0.573586 1.3:-75326114 MS.gene71826:CDS
GGAATAAATCTCACACCTAA+GGG 0.576466 1.3:-75325950 None:intergenic
GATGCCAAAGAGAACGTGGA+TGG 0.579919 1.3:-75326380 MS.gene71826:CDS
AAAGGTTTCGAAGAGAAATG+AGG 0.583015 1.3:-75327356 MS.gene71826:CDS
ACTGTACTTAATGAAATGGA+TGG 0.588834 1.3:-75329238 MS.gene71826:CDS
TAAGACACGGGCATTTCAAG+AGG 0.589841 1.3:-75327508 MS.gene71826:CDS
CTTTGCTTCAATCACAACCG+TGG 0.591835 1.3:+75331288 None:intergenic
AAATGTGGAGAGCATTTCCA+AGG 0.591878 1.3:+75329104 None:intergenic
CATGGAAGATGGAGAACCAC+AGG 0.594124 1.3:-75329503 MS.gene71826:CDS
GATTATATTAGAGATTAATG+TGG 0.595537 1.3:-75331350 None:intergenic
CATATTGTGAAGTCCTACCT+TGG 0.595814 1.3:-75329121 MS.gene71826:CDS
TCAAGAAAAGATGATGCCGC+AGG 0.596185 1.3:+75327151 None:intergenic
CCACAAATCAACCATAGAAG+TGG 0.600691 1.3:+75329414 None:intergenic
TGAGAAGGCTATTGAGCATG+AGG 0.603012 1.3:-75329476 MS.gene71826:CDS
CTTTCTACCTAATGATCCTG+CGG 0.603597 1.3:-75327167 MS.gene71826:CDS
GTGGAGAGCATTTCCAAGGT+AGG 0.605480 1.3:+75329108 None:intergenic
TGAGCATGAGGTTCAAGCAA+AGG 0.611999 1.3:-75329464 MS.gene71826:CDS
AGAACCACAGGTAGATGAGA+AGG 0.612954 1.3:-75329491 MS.gene71826:CDS
ATACTTTGATAGTGCACTAG+AGG 0.618108 1.3:+75326638 None:intergenic
ACCTAGCCGTGGGAACTAGA+CGG 0.618655 1.3:+75327799 None:intergenic
ATAGCCTTCTCATCTACCTG+TGG 0.620098 1.3:+75329487 None:intergenic
AGAATCAGCAAGTGATGAGG+AGG 0.621827 1.3:-75326420 MS.gene71826:CDS
GCAAGCCAACTCTTAAGACA+CGG 0.624117 1.3:-75327521 MS.gene71826:CDS
CAACTGTCGAATGAAAATGA+AGG 0.625145 1.3:+75328318 None:intergenic
TGAAGAATCAGCAAGTGATG+AGG 0.631498 1.3:-75326423 MS.gene71826:CDS
CGTCATTGAACTTCTCGGAG+TGG 0.634980 1.3:-75328365 MS.gene71826:CDS
CCCGTCTAGTTCCCACGGCT+AGG 0.635585 1.3:-75327800 MS.gene71826:CDS
ATTTGATGACTACAAAACAA+TGG 0.635609 1.3:-75329156 MS.gene71826:CDS
AAGGGGAAAGTACCTAGCCG+TGG 0.636588 1.3:+75327788 None:intergenic
AAGGCGTGTTGATATGCAGT+CGG 0.638450 1.3:+75328337 None:intergenic
GGAAGATGTGGATGATGACA+TGG 0.639734 1.3:-75329521 MS.gene71826:CDS
CAGATTGTGAACTATAAGCA+CGG 0.640362 1.3:+75327871 None:intergenic
TGAGGATGCCAAAGAGAACG+TGG 0.646565 1.3:-75326384 MS.gene71826:CDS
AGGGGAAAGTACCTAGCCGT+GGG 0.649443 1.3:+75327789 None:intergenic
AGAAAATGGGAGCTTAAATG+CGG 0.652168 1.3:-75329377 MS.gene71826:CDS
CAAGCCAACTCTTAAGACAC+GGG 0.654132 1.3:-75327520 MS.gene71826:CDS
AGTAGCCCGTCTAGTTCCCA+CGG 0.654607 1.3:-75327805 MS.gene71826:CDS
AATAGAAAATCTTCAGCACA+AGG 0.655625 1.3:-75331251 MS.gene71826:intron
TAGACACGAAACAACAGGAA+GGG 0.657156 1.3:+75328525 None:intergenic
CGGATACATCTCAACCTAAG+GGG 0.658910 1.3:+75327771 None:intergenic
CATTGATGATGATGTTGTGG+AGG 0.661802 1.3:-75326111 MS.gene71826:CDS
AATGAGGCAGCTTATTCGCG+AGG 0.672768 1.3:-75327340 MS.gene71826:intron
AGATGAATGATGATCAACAT+CGG 0.678740 1.3:+75326019 None:intergenic
TGTCCTAAAAGCCCTCATCA+GGG 0.678828 1.3:+75329348 None:intergenic
GTACTTGAAAGAGAATGACC+CGG 0.684135 1.3:-75330598 MS.gene71826:CDS
TGATGACTACAAAACAATGG+AGG 0.690281 1.3:-75329153 MS.gene71826:CDS
ATAGACACGAAACAACAGGA+AGG 0.702686 1.3:+75328524 None:intergenic
TTGCGGAACACCTAGCACTG+TGG 0.724336 1.3:-75327458 MS.gene71826:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACCTTTTATATATTTAT+TGG - chr1.3:75326609-75326628 MS.gene71826:CDS 10.0%
!!! TTACCTTTTATATATTTATT+GGG - chr1.3:75326610-75326629 MS.gene71826:CDS 10.0%
!!! TTTTTGACAATTTTATTTTA+TGG - chr1.3:75329294-75329313 MS.gene71826:CDS 10.0%
!! AAAAAAGGAAAAAGAAATAT+TGG + chr1.3:75327029-75327048 None:intergenic 15.0%
!! AAAAAGGAAAAAGAAATATT+GGG + chr1.3:75327028-75327047 None:intergenic 15.0%
!! AAAATTAAATTTGTAGTGAT+TGG + chr1.3:75327294-75327313 None:intergenic 15.0%
!! AAACTTATATTTAGCTATTA+AGG + chr1.3:75326393-75326412 None:intergenic 15.0%
!! AAATTAAGAATAGTATCATT+CGG - chr1.3:75328551-75328570 MS.gene71826:CDS 15.0%
!! CACTTGATATAATAAAATAA+AGG + chr1.3:75330512-75330531 None:intergenic 15.0%
!! TAAAATAAAGGAAAAGAAAA+TGG + chr1.3:75330500-75330519 None:intergenic 15.0%
!! TACAATTCTCAAATATAAAT+GGG + chr1.3:75330595-75330614 None:intergenic 15.0%
!! TGATAAAAGTAAAACATAAA+AGG + chr1.3:75330001-75330020 None:intergenic 15.0%
!! TTACAATTCTCAAATATAAA+TGG + chr1.3:75330596-75330615 None:intergenic 15.0%
!!! AAATTTTCTATCTTGATTAA+AGG + chr1.3:75327481-75327500 None:intergenic 15.0%
!!! TTAATCAAGATAGAAAATTT+TGG - chr1.3:75327481-75327500 MS.gene71826:CDS 15.0%
!!! TTATGTTTTACTTTTATCAT+TGG - chr1.3:75330002-75330021 MS.gene71826:intron 15.0%
!! AAAATATTCTTCATTGTTGT+TGG - chr1.3:75328260-75328279 MS.gene71826:intron 20.0%
!! AACAATGTAATGTAATGTAA+TGG + chr1.3:75326073-75326092 None:intergenic 20.0%
!! ACAATGTAATGTAATGTAAT+GGG + chr1.3:75326072-75326091 None:intergenic 20.0%
!! ATAAAACAAAAAGGTTGAAA+AGG - chr1.3:75331321-75331340 MS.gene71826:CDS 20.0%
!! GCAAATCAATTAAAGAAAAT+GGG - chr1.3:75327902-75327921 MS.gene71826:CDS 20.0%
!! TACATTAATTGAGATGAATA+TGG - chr1.3:75326801-75326820 MS.gene71826:intron 20.0%
!! TAGCCCAATAAATATATAAA+AGG + chr1.3:75326616-75326635 None:intergenic 20.0%
!! TATAGAAGTTTATTTGCTTA+AGG + chr1.3:75330332-75330351 None:intergenic 20.0%
!! TATATAACATAACAGCAAAA+AGG + chr1.3:75327570-75327589 None:intergenic 20.0%
!! TGATATCATTTACTTTACAT+CGG - chr1.3:75328235-75328254 MS.gene71826:intron 20.0%
!! TGATTAAAAAGCTTAATAGA+TGG - chr1.3:75328461-75328480 MS.gene71826:CDS 20.0%
!! TGCAAATCAATTAAAGAAAA+TGG - chr1.3:75327901-75327920 MS.gene71826:CDS 20.0%
!! TTAACATATGTCTATTCATT+TGG - chr1.3:75328682-75328701 MS.gene71826:intron 20.0%
!! TTAAGCAAATAAACTTCTAT+AGG - chr1.3:75330331-75330350 MS.gene71826:intron 20.0%
!!! AACTAAATTTTTCTGAAATC+TGG - chr1.3:75328493-75328512 MS.gene71826:CDS 20.0%
!!! ACTTTTGTTTGTTTTGTATT+AGG - chr1.3:75326964-75326983 MS.gene71826:intron 20.0%
!!! GCTATTAAGTTATTTCATTT+TGG - chr1.3:75330395-75330414 MS.gene71826:intron 20.0%
!!! TTCTTTTTACTTTTTATCTG+AGG - chr1.3:75331079-75331098 MS.gene71826:intron 20.0%
!!! TTGTATTTTTTTAGACCTAT+AGG - chr1.3:75327327-75327346 MS.gene71826:intron 20.0%
!!! TTTTTGCTGTTATGTTATAT+AGG - chr1.3:75327569-75327588 MS.gene71826:intron 20.0%
! AAACAAGACAGATATTAGAT+AGG + chr1.3:75326773-75326792 None:intergenic 25.0%
! ACAAAAAAACGACTCATTAA+AGG - chr1.3:75330703-75330722 MS.gene71826:intron 25.0%
! ACTTTCTTGTTGAAATTATC+AGG - chr1.3:75328711-75328730 MS.gene71826:intron 25.0%
! AGACAAAGCATAAAACAAAA+AGG - chr1.3:75331312-75331331 MS.gene71826:CDS 25.0%
! ATCTCATTAGTAATGAGTAA+AGG - chr1.3:75329186-75329205 MS.gene71826:CDS 25.0%
! ATTAAATTTGTAGTGATTGG+TGG + chr1.3:75327291-75327310 None:intergenic 25.0%
! ATTTAGTAATGCATGCAAAT+AGG + chr1.3:75327686-75327705 None:intergenic 25.0%
! CGAATAAAACAAATCTATCA+AGG + chr1.3:75329229-75329248 None:intergenic 25.0%
! CTAAAAGATTTATAGCCTAT+AGG + chr1.3:75327345-75327364 None:intergenic 25.0%
! TAAAGTTATAACCACTTCTA+TGG - chr1.3:75327867-75327886 MS.gene71826:CDS 25.0%
! TACCAATAATGAACACAAAA+TGG + chr1.3:75327266-75327285 None:intergenic 25.0%
! TACTCATTACTAATGAGATA+CGG + chr1.3:75329185-75329204 None:intergenic 25.0%
! TATGCAAGAATACCTTTAAA+AGG + chr1.3:75329743-75329762 None:intergenic 25.0%
! TGCACTTAATACAAAAACTA+AGG - chr1.3:75329014-75329033 MS.gene71826:CDS 25.0%
! TTAAATTTGTAGTGATTGGT+GGG + chr1.3:75327290-75327309 None:intergenic 25.0%
!! AAGAATACCTTTAAAAGGTT+AGG + chr1.3:75329738-75329757 None:intergenic 25.0%
!! AAGGAAAAAAGTTTTTATGC+AGG + chr1.3:75330313-75330332 None:intergenic 25.0%
!! ATTTGATGACTACAAAACAA+TGG - chr1.3:75328136-75328155 MS.gene71826:intron 25.0%
!! CTATAGGCTATAAATCTTTT+AGG - chr1.3:75327343-75327362 MS.gene71826:CDS 25.0%
!! GTGAATTTAAAATTCAAACC+TGG + chr1.3:75330732-75330751 None:intergenic 25.0%
!! TTCCATTTTGTGTTCATTAT+TGG - chr1.3:75327261-75327280 MS.gene71826:intron 25.0%
!! TTCTTAATTTTGTTCGAGTA+CGG + chr1.3:75328541-75328560 None:intergenic 25.0%
!! TTTAAAGTAAAGTGACATTG+AGG + chr1.3:75330565-75330584 None:intergenic 25.0%
!!! AATCTTTTAGGTTAAGGTTA+TGG - chr1.3:75327355-75327374 MS.gene71826:CDS 25.0%
!!! AGAATTTTTTTCCCATATCT+AGG + chr1.3:75326901-75326920 None:intergenic 25.0%
!!! AGATTTTCTCTTTACTTTTG+AGG - chr1.3:75330173-75330192 MS.gene71826:intron 25.0%
!!! CATTAGTACTTTAAAGTTTG+TGG - chr1.3:75328374-75328393 MS.gene71826:CDS 25.0%
!!! CTTTTTCGGATGAAAAAAAA+AGG + chr1.3:75327044-75327063 None:intergenic 25.0%
!!! CTTTTTTTTTCATCCGAAAA+AGG - chr1.3:75327042-75327061 MS.gene71826:intron 25.0%
!!! GCTATAAATCTTTTAGGTTA+AGG - chr1.3:75327349-75327368 MS.gene71826:CDS 25.0%
!!! TAAAGGTATTCTTGCATATT+AGG - chr1.3:75329745-75329764 MS.gene71826:intron 25.0%
!!! TTAAATGTCTGAGCTATTTT+CGG - chr1.3:75326200-75326219 MS.gene71826:intron 25.0%
!!! TTCATTTTGGTCTATATATC+TGG - chr1.3:75330408-75330427 MS.gene71826:intron 25.0%
!!! TTGTTTTATTCGTGTTTGAT+TGG - chr1.3:75329237-75329256 MS.gene71826:CDS 25.0%
AAAATTTCCAGTGTTCTTGT+TGG - chr1.3:75330822-75330841 MS.gene71826:intron 30.0%
AAAGAGCAAGAAAAATTCCA+CGG - chr1.3:75325987-75326006 MS.gene71826:CDS 30.0%
AAATACACATCTCACATCAA+TGG + chr1.3:75326844-75326863 None:intergenic 30.0%
AATAGAAAATCTTCAGCACA+AGG - chr1.3:75326041-75326060 MS.gene71826:CDS 30.0%
AATCTCTTGTAAGCTATAGA+TGG - chr1.3:75327431-75327450 MS.gene71826:CDS 30.0%
ACTGTACTTAATGAAATGGA+TGG - chr1.3:75328054-75328073 MS.gene71826:intron 30.0%
AGAGATAAACATTGCTTGAA+AGG + chr1.3:75326419-75326438 None:intergenic 30.0%
AGATACTGGTACAAAAGAAT+GGG + chr1.3:75329573-75329592 None:intergenic 30.0%
AGATGAATGATGATCAACAT+CGG + chr1.3:75331276-75331295 None:intergenic 30.0%
CACAACGAAATGTAAATTCA+AGG - chr1.3:75327130-75327149 MS.gene71826:intron 30.0%
CAGTCATTTGATTCAAAATG+TGG + chr1.3:75328206-75328225 None:intergenic 30.0%
GAAATGGCAATTCAAAACAT+AGG + chr1.3:75328863-75328882 None:intergenic 30.0%
GATAGATCAATTGTTAGGAT+TGG + chr1.3:75329140-75329159 None:intergenic 30.0%
GGCTACTCCAAAAATTATTT+GGG + chr1.3:75329474-75329493 None:intergenic 30.0%
GTACCTTGATATATTTCCTT+AGG + chr1.3:75328302-75328321 None:intergenic 30.0%
GTATGTGTGAAATTTGAACT+AGG - chr1.3:75326570-75326589 MS.gene71826:intron 30.0%
GTGTCTTCTCAAAATCTAAT+AGG + chr1.3:75327385-75327404 None:intergenic 30.0%
GTTGACTGTACTTAATGAAA+TGG - chr1.3:75328050-75328069 MS.gene71826:intron 30.0%
TAGATACTGGTACAAAAGAA+TGG + chr1.3:75329574-75329593 None:intergenic 30.0%
TCAAGGTACAAATAGTTCAT+TGG - chr1.3:75328313-75328332 MS.gene71826:CDS 30.0%
TGCATAGATGATTGCTTTAA+AGG - chr1.3:75328826-75328845 MS.gene71826:intron 30.0%
TGGAAGAAAAGAGATCATAA+TGG - chr1.3:75328113-75328132 MS.gene71826:intron 30.0%
TTCAAGCAATGTTTATCTCT+AGG - chr1.3:75326419-75326438 MS.gene71826:CDS 30.0%
! AAATCCACCTAACCTTTTAA+AGG - chr1.3:75329728-75329747 MS.gene71826:intron 30.0%
! AATACCTTTAAAAGGTTAGG+TGG + chr1.3:75329735-75329754 None:intergenic 30.0%
! ACCAGAAGTATATACTTACA+AGG + chr1.3:75328606-75328625 None:intergenic 30.0%
! CCAGAAGTATATACTTACAA+GGG + chr1.3:75328605-75328624 None:intergenic 30.0%
! CTTTGCTTGTTCTTATTTGA+AGG - chr1.3:75326127-75326146 MS.gene71826:CDS 30.0%
! GTTTTGTATTAGGAAGATGT+GGG - chr1.3:75326974-75326993 MS.gene71826:intron 30.0%
! TGATAATGATGTATGCATGT+TGG + chr1.3:75330779-75330798 None:intergenic 30.0%
! TGTCTTTTATTCCAATTGTG+AGG - chr1.3:75329882-75329901 MS.gene71826:intron 30.0%
! TGTTTTGTATTAGGAAGATG+TGG - chr1.3:75326973-75326992 MS.gene71826:intron 30.0%
! TTCGTCTGAATGTTTTCTTT+AGG - chr1.3:75329334-75329353 MS.gene71826:CDS 30.0%
! TTCTGGTAATGTGAATGAAA+AGG - chr1.3:75328619-75328638 MS.gene71826:intron 30.0%
! TTTTGTAGTGAACAATGATG+AGG + chr1.3:75328342-75328361 None:intergenic 30.0%
!! ACAGTCAACTTGATTTTGAT+AGG - chr1.3:75330616-75330635 MS.gene71826:CDS 30.0%
!! AGTATTGATTGTTTCCTTGT+TGG - chr1.3:75330206-75330225 MS.gene71826:intron 30.0%
!! TAGATTTTGAGAAGACACTT+GGG - chr1.3:75327387-75327406 MS.gene71826:CDS 30.0%
!! TTAGATTTTGAGAAGACACT+TGG - chr1.3:75327386-75327405 MS.gene71826:CDS 30.0%
!! TTGTTTTATGCTTTGTCTTG+CGG + chr1.3:75331310-75331329 None:intergenic 30.0%
!!! TTTTTTTCCCATATCTAGGA+TGG + chr1.3:75326897-75326916 None:intergenic 30.0%
AAAGGTTTCGAAGAGAAATG+AGG - chr1.3:75329936-75329955 MS.gene71826:intron 35.0%
AAATGCTAACATGTGCTCTA+AGG - chr1.3:75327154-75327173 MS.gene71826:CDS 35.0%
AAGTGCATCCCTTAAAATCA+TGG + chr1.3:75329001-75329020 None:intergenic 35.0%
AATGCTAACATGTGCTCTAA+GGG - chr1.3:75327155-75327174 MS.gene71826:CDS 35.0%
ACAAAACAATGGAGGACTTA+TGG - chr1.3:75328147-75328166 MS.gene71826:intron 35.0%
ACAAGTAAAGGTTTCAGTGA+AGG - chr1.3:75326514-75326533 MS.gene71826:intron 35.0%
AGAAAATGGGAGCTTAAATG+CGG - chr1.3:75327915-75327934 MS.gene71826:CDS 35.0%
AGACATATTGCATGTCCATA+GGG - chr1.3:75326476-75326495 MS.gene71826:intron 35.0%
AGCTTGGAAGAATTGAAACA+TGG + chr1.3:75330282-75330301 None:intergenic 35.0%
ATATATTTCCTTAGGAGCGA+AGG + chr1.3:75328294-75328313 None:intergenic 35.0%
ATGAATAGACACGAAACAAC+AGG + chr1.3:75328775-75328794 None:intergenic 35.0%
ATTGTTTCCTTGTTGGATGT+TGG - chr1.3:75330213-75330232 MS.gene71826:intron 35.0%
CAAATCTATCAAGGAATGTC+TGG + chr1.3:75329220-75329239 None:intergenic 35.0%
CAACTGTCGAATGAAAATGA+AGG + chr1.3:75328977-75328996 None:intergenic 35.0%
CAGATTGTGAACTATAAGCA+CGG + chr1.3:75329424-75329443 None:intergenic 35.0%
CCAAAAATTATTTGGGTCAG+TGG + chr1.3:75329467-75329486 None:intergenic 35.0%
CCCTTGTAAGTATATACTTC+TGG - chr1.3:75328602-75328621 MS.gene71826:intron 35.0%
GATTGAAGCAAAGCAACATA+AGG - chr1.3:75326014-75326033 MS.gene71826:CDS 35.0%
GCAAATTGACCAAAGTTGAA+AGG - chr1.3:75329918-75329937 MS.gene71826:intron 35.0%
GCTCCTAAGGAAATATATCA+AGG - chr1.3:75328296-75328315 MS.gene71826:CDS 35.0%
GGGCTACTCCAAAAATTATT+TGG + chr1.3:75329475-75329494 None:intergenic 35.0%
GTCAGGATAGATCAATTGTT+AGG + chr1.3:75329145-75329164 None:intergenic 35.0%
GTTTCACAGCATTTACGAAA+TGG + chr1.3:75328879-75328898 None:intergenic 35.0%
TAAAAATCTTCGTCCTGCAA+TGG + chr1.3:75326671-75326690 None:intergenic 35.0%
TAAATTCACCTCCATTCTCA+TGG - chr1.3:75330743-75330762 MS.gene71826:intron 35.0%
TAGACATATTGCATGTCCAT+AGG - chr1.3:75326475-75326494 MS.gene71826:intron 35.0%
TCATTAACTCTCTTGAGCTT+TGG - chr1.3:75329387-75329406 MS.gene71826:CDS 35.0%
TCTAATGCCATCCTAGATAT+GGG - chr1.3:75326887-75326906 MS.gene71826:intron 35.0%
TCTTCGAAACCTTTCAACTT+TGG + chr1.3:75329930-75329949 None:intergenic 35.0%
TGAATATGTCTTCCAATGCT+TGG - chr1.3:75328405-75328424 MS.gene71826:CDS 35.0%
TGATGACTACAAAACAATGG+AGG - chr1.3:75328139-75328158 MS.gene71826:intron 35.0%
TGATTTACGCAGCATATTGA+AGG - chr1.3:75329664-75329683 MS.gene71826:intron 35.0%
TGTAGGAAATCTCAAGAGAT+TGG - chr1.3:75327634-75327653 MS.gene71826:CDS 35.0%
TGTGTGAAATTTGAACTAGG+TGG - chr1.3:75326573-75326592 MS.gene71826:intron 35.0%
TTCTAATGCCATCCTAGATA+TGG - chr1.3:75326886-75326905 MS.gene71826:intron 35.0%
TTCTTCATCACCAAAAACAG+AGG + chr1.3:75330856-75330875 None:intergenic 35.0%
TTTCAATTCTTCCAAGCTCT+CGG - chr1.3:75330284-75330303 MS.gene71826:intron 35.0%
! AATTTTCCACACTCAGATTG+AGG - chr1.3:75330062-75330081 MS.gene71826:intron 35.0%
! ACAGTTGGCCATGATTTTAA+GGG - chr1.3:75328990-75329009 MS.gene71826:intron 35.0%
! CCACTGACCCAAATAATTTT+TGG - chr1.3:75329464-75329483 MS.gene71826:CDS 35.0%
! CTTCATTTTCATTCGACAGT+TGG - chr1.3:75328975-75328994 MS.gene71826:intron 35.0%
! CTTTTCGCAAGGTTTATGAA+TGG - chr1.3:75329360-75329379 MS.gene71826:CDS 35.0%
! GTGCAGTGATCATAATTTGT+AGG - chr1.3:75327617-75327636 MS.gene71826:intron 35.0%
! TTAACAACCTTTTCCATTGC+AGG - chr1.3:75326655-75326674 MS.gene71826:CDS 35.0%
! TTCTTTTATCCAGGAAGATG+TGG - chr1.3:75327759-75327778 MS.gene71826:CDS 35.0%
! TTGTGTGTTTGCTGGTAAAT+TGG - chr1.3:75327511-75327530 MS.gene71826:CDS 35.0%
!! AAGAACATTTGTGACTTGCT+AGG - chr1.3:75328652-75328671 MS.gene71826:intron 35.0%
!! AGATTTTGAGAAGACACTTG+GGG - chr1.3:75327388-75327407 MS.gene71826:CDS 35.0%
!! ATACTTTGATAGTGCACTAG+AGG + chr1.3:75330657-75330676 None:intergenic 35.0%
!! TATTGAAGGTACTCGTTACT+TGG - chr1.3:75329678-75329697 MS.gene71826:intron 35.0%
!!! CGTTTTTTTGTTTTGCTCTC+TGG + chr1.3:75330694-75330713 None:intergenic 35.0%
!!! TGCTTTTTCCTCTTTCCTTT+TGG + chr1.3:75331143-75331162 None:intergenic 35.0%
!!! TTTGTCTTGCGGTTTTGTTT+TGG + chr1.3:75331299-75331318 None:intergenic 35.0%
!!! TTTTTTGTTTTGCTCTCTGG+CGG + chr1.3:75330691-75330710 None:intergenic 35.0%
AACTGCGTCATTGAACTTCT+CGG - chr1.3:75328922-75328941 MS.gene71826:intron 40.0%
AAGTGTCAAGCTCATAAGTC+AGG + chr1.3:75329162-75329181 None:intergenic 40.0%
AATTACTGCACAAGACCGAA+TGG + chr1.3:75328442-75328461 None:intergenic 40.0%
AATTGGTTGAAGAGGAATGC+CGG - chr1.3:75327528-75327547 MS.gene71826:CDS 40.0%
ACAAGCAAAGTTGCATACAC+AGG + chr1.3:75326117-75326136 None:intergenic 40.0%
ACAGTAATCCATGAGAATGG+AGG + chr1.3:75330754-75330773 None:intergenic 40.0%
ACATTGAGGCGTGAAATAAG+TGG + chr1.3:75330551-75330570 None:intergenic 40.0%
ACGACTCATTAAAGGAATCC+AGG - chr1.3:75330711-75330730 MS.gene71826:intron 40.0%
ACGTAGACGAAGACAAGTAA+AGG - chr1.3:75326502-75326521 MS.gene71826:intron 40.0%
AGAGAGTTGTGCATCTGTAT+TGG - chr1.3:75328796-75328815 MS.gene71826:intron 40.0%
AGGAGCAATCTTGACAATAC+CGG + chr1.3:75327550-75327569 None:intergenic 40.0%
AGTAAGCTGCTTATCCAAAC+AGG - chr1.3:75326366-75326385 MS.gene71826:CDS 40.0%
ATAGACACGAAACAACAGGA+AGG + chr1.3:75328771-75328790 None:intergenic 40.0%
ATCAGGTGTCTCTTCATTTC+TGG - chr1.3:75328728-75328747 MS.gene71826:intron 40.0%
CAAGGTAGGACTTCACAATA+TGG + chr1.3:75328173-75328192 None:intergenic 40.0%
CATATTGTGAAGTCCTACCT+TGG - chr1.3:75328171-75328190 MS.gene71826:intron 40.0%
CATTGAGGCGTGAAATAAGT+GGG + chr1.3:75330550-75330569 None:intergenic 40.0%
CATTGCAGTGGCTAAATGAT+GGG - chr1.3:75327066-75327085 MS.gene71826:intron 40.0%
CCACAAATCAACCATAGAAG+TGG + chr1.3:75327881-75327900 None:intergenic 40.0%
CTACTGAACCAAAAGGAAAG+AGG - chr1.3:75331132-75331151 MS.gene71826:intron 40.0%
CTCCACAACATCATCATCAA+TGG + chr1.3:75331183-75331202 None:intergenic 40.0%
CTTAGCTACTAAGCTTGCAT+TGG - chr1.3:75326919-75326938 MS.gene71826:intron 40.0%
CTTTCTACCTAATGATCCTG+CGG - chr1.3:75330125-75330144 MS.gene71826:intron 40.0%
GAAGAATTGAAACATGGAGC+AGG + chr1.3:75330276-75330295 None:intergenic 40.0%
GACACAGTAATCCATGAGAA+TGG + chr1.3:75330757-75330776 None:intergenic 40.0%
GCCACAAACATGTCTCTAAA+GGG + chr1.3:75327106-75327125 None:intergenic 40.0%
GCTAAACACTATCGTATGGT+GGG - chr1.3:75330430-75330449 MS.gene71826:intron 40.0%
GGAGGATACTAAAGAGAATG+AGG - chr1.3:75330890-75330909 MS.gene71826:intron 40.0%
GTAAGCTGCTTATCCAAACA+GGG - chr1.3:75326367-75326386 MS.gene71826:CDS 40.0%
GTACTTGAAAGAGAATGACC+CGG - chr1.3:75326694-75326713 MS.gene71826:intron 40.0%
GTGAAATTTGAACTAGGTGG+TGG - chr1.3:75326576-75326595 MS.gene71826:intron 40.0%
TAGACACGAAACAACAGGAA+GGG + chr1.3:75328770-75328789 None:intergenic 40.0%
TCACTGAACTTAAGCAGATC+CGG + chr1.3:75326716-75326735 None:intergenic 40.0%
TCAGGTGTCTCTTCATTTCT+GGG - chr1.3:75328729-75328748 MS.gene71826:intron 40.0%
TCATCTCCAGCATATCCAAA+AGG + chr1.3:75329601-75329620 None:intergenic 40.0%
TCATTGCAGTGGCTAAATGA+TGG - chr1.3:75327065-75327084 MS.gene71826:intron 40.0%
TCTAGCAGCAAAATGTTACG+AGG + chr1.3:75329094-75329113 None:intergenic 40.0%
TCTCATCATCATCACCATAG+TGG + chr1.3:75327975-75327994 None:intergenic 40.0%
TCTGGCTAAACACTATCGTA+TGG - chr1.3:75330426-75330445 MS.gene71826:intron 40.0%
TGAAGAATCAGCAAGTGATG+AGG - chr1.3:75330869-75330888 MS.gene71826:intron 40.0%
TGCCACAAACATGTCTCTAA+AGG + chr1.3:75327107-75327126 None:intergenic 40.0%
TGCTGGTAAATTGGTTGAAG+AGG - chr1.3:75327520-75327539 MS.gene71826:CDS 40.0%
TTAGCTATTAAGGCCCTGTT+TGG + chr1.3:75326383-75326402 None:intergenic 40.0%
TTCTGTGGTTGAAGAACTTG+CGG - chr1.3:75329817-75329836 MS.gene71826:intron 40.0%
TTCTTCTCCAACAAGAACAC+TGG + chr1.3:75330832-75330851 None:intergenic 40.0%
TTGTGCATCTGTATTGGATC+TGG - chr1.3:75328802-75328821 MS.gene71826:intron 40.0%
! ACCAGTATCTATGCTCCTTT+TGG - chr1.3:75329583-75329602 MS.gene71826:intron 40.0%
! ATCAACATCGGCATTTTTCC+CGG + chr1.3:75331264-75331283 None:intergenic 40.0%
! CGTAACATTTTGCTGCTAGA+GGG - chr1.3:75329094-75329113 MS.gene71826:CDS 40.0%
! CTGTTTCGCTTCTTTTATCC+AGG - chr1.3:75327750-75327769 MS.gene71826:CDS 40.0%
! GACAGTTGGCCATGATTTTA+AGG - chr1.3:75328989-75329008 MS.gene71826:intron 40.0%
! GAGCAATACTTGTCATTTCC+AGG + chr1.3:75330966-75330985 None:intergenic 40.0%
! GGAGAAGAATCCTCTGTTTT+TGG - chr1.3:75330843-75330862 MS.gene71826:intron 40.0%
! TATGCTCCTTTTGGATATGC+TGG - chr1.3:75329592-75329611 MS.gene71826:intron 40.0%
! TCCAAAAGGAGCATAGATAC+TGG + chr1.3:75329587-75329606 None:intergenic 40.0%
! TCCCTTTAGAGACATGTTTG+TGG - chr1.3:75327102-75327121 MS.gene71826:intron 40.0%
! TCGTAACATTTTGCTGCTAG+AGG - chr1.3:75329093-75329112 MS.gene71826:CDS 40.0%
! TGCGCTTTTCATTCACAAAC+TGG + chr1.3:75330095-75330114 None:intergenic 40.0%
! TTGGCATGCATCAGATTTTG+TGG - chr1.3:75330021-75330040 MS.gene71826:intron 40.0%
!! AAATGTGGAGAGCATTTCCA+AGG + chr1.3:75328191-75328210 None:intergenic 40.0%
!! CAATTGTTAGGATTGGTTCC+AGG + chr1.3:75329133-75329152 None:intergenic 40.0%
!! CATTGATGATGATGTTGTGG+AGG - chr1.3:75331181-75331200 MS.gene71826:intron 40.0%
!! CCACTTCTATGGTTGATTTG+TGG - chr1.3:75327878-75327897 MS.gene71826:CDS 40.0%
!! TCTTTAGGAAGCTTTTCGCA+AGG - chr1.3:75329349-75329368 MS.gene71826:CDS 40.0%
!! TGCCATTGATGATGATGTTG+TGG - chr1.3:75331178-75331197 MS.gene71826:intron 40.0%
!!! AGAGGCTTGTGTTTTTTCTG+TGG - chr1.3:75329802-75329821 MS.gene71826:intron 40.0%
!!! CTCTTTCCTTTTGGTTCAGT+AGG + chr1.3:75331134-75331153 None:intergenic 40.0%
AAGTTGCGCAACCTCACAAT+TGG + chr1.3:75329896-75329915 None:intergenic 45.0%
AATGCCCGTGTCTTAAGAGT+TGG + chr1.3:75329779-75329798 None:intergenic 45.0%
AATGGGTAGAAGCAGCAATC+TGG + chr1.3:75329556-75329575 None:intergenic 45.0%
AGAACCACAGGTAGATGAGA+AGG - chr1.3:75327801-75327820 MS.gene71826:CDS 45.0%
AGAATCAGCAAGTGATGAGG+AGG - chr1.3:75330872-75330891 MS.gene71826:intron 45.0%
AGCATCGTCAGTCACTTCAT+TGG + chr1.3:75330378-75330397 None:intergenic 45.0%
AGGTCAACCAACATCCAACA+AGG + chr1.3:75330223-75330242 None:intergenic 45.0%
AGTTCCATCCACGTTCTCTT+TGG + chr1.3:75330919-75330938 None:intergenic 45.0%
ATAGCCTTCTCATCTACCTG+TGG + chr1.3:75327808-75327827 None:intergenic 45.0%
CAACAGCCTACTGAACCAAA+AGG - chr1.3:75331125-75331144 MS.gene71826:intron 45.0%
CAAGCCAACTCTTAAGACAC+GGG - chr1.3:75329772-75329791 MS.gene71826:intron 45.0%
CACTGAACTTAAGCAGATCC+GGG + chr1.3:75326715-75326734 None:intergenic 45.0%
CACTGTGGAGTTACTCTGTT+GGG - chr1.3:75329849-75329868 MS.gene71826:intron 45.0%
CAGGTGTCTCTTCATTTCTG+GGG - chr1.3:75328730-75328749 MS.gene71826:intron 45.0%
CCGGATACATCTCAACCTAA+GGG + chr1.3:75329525-75329544 None:intergenic 45.0%
CGCAGGATCATTAGGTAGAA+AGG + chr1.3:75330127-75330146 None:intergenic 45.0%
CGGATACATCTCAACCTAAG+GGG + chr1.3:75329524-75329543 None:intergenic 45.0%
CTGAGGAATGCTTTGCTTTC+AGG - chr1.3:75331096-75331115 MS.gene71826:intron 45.0%
CTTTGCTTCAATCACAACCG+TGG + chr1.3:75326007-75326026 None:intergenic 45.0%
GAGGGATACAATCAATCACC+TGG - chr1.3:75329112-75329131 MS.gene71826:CDS 45.0%
GAGTTACTCTGTTGGGTTCA+TGG - chr1.3:75329856-75329875 MS.gene71826:intron 45.0%
GCAAGCCAACTCTTAAGACA+CGG - chr1.3:75329771-75329790 MS.gene71826:intron 45.0%
GGAAGATGTGGATGATGACA+TGG - chr1.3:75327771-75327790 MS.gene71826:CDS 45.0%
GGCTAAACACTATCGTATGG+TGG - chr1.3:75330429-75330448 MS.gene71826:intron 45.0%
GTGGATGATGACATGGAAGA+TGG - chr1.3:75327778-75327797 MS.gene71826:CDS 45.0%
GTGTGTTTGTGTATGCAGCT+GGG + chr1.3:75331018-75331037 None:intergenic 45.0%
TAAGACACGGGCATTTCAAG+AGG - chr1.3:75329784-75329803 MS.gene71826:intron 45.0%
TCAAGAAAAGATGATGCCGC+AGG + chr1.3:75330144-75330163 None:intergenic 45.0%
TCCGAAAAAGGTCATTGCAG+TGG - chr1.3:75327054-75327073 MS.gene71826:intron 45.0%
TCCGGATACATCTCAACCTA+AGG + chr1.3:75329526-75329545 None:intergenic 45.0%
TCTTCGTCCTGCAATGGAAA+AGG + chr1.3:75326665-75326684 None:intergenic 45.0%
TGAGAAGGCTATTGAGCATG+AGG - chr1.3:75327816-75327835 MS.gene71826:CDS 45.0%
TGAGCATGAGGTTCAAGCAA+AGG - chr1.3:75327828-75327847 MS.gene71826:CDS 45.0%
TGTCATCATCCACATCTTCC+TGG + chr1.3:75327771-75327790 None:intergenic 45.0%
TGTCCTAAAAGCCCTCATCA+GGG + chr1.3:75327947-75327966 None:intergenic 45.0%
TTGTTGAAGCTTCCTGCTTC+TGG - chr1.3:75328090-75328109 MS.gene71826:intron 45.0%
! AAGGCGTGTTGATATGCAGT+CGG + chr1.3:75328958-75328977 None:intergenic 45.0%
! CAGCAATCTGGTTCAACATC+CGG + chr1.3:75329544-75329563 None:intergenic 45.0%
! CATTAGCCTCAATCTGAGTG+TGG + chr1.3:75330071-75330090 None:intergenic 45.0%
! CTTCCAATGCTTGGTGATTG+TGG - chr1.3:75328414-75328433 MS.gene71826:CDS 45.0%
! CTTGTCATTTCCAGGTAACC+AGG + chr1.3:75330958-75330977 None:intergenic 45.0%
! GAACTAGGTGGTGGTTGATA+GGG - chr1.3:75326585-75326604 MS.gene71826:CDS 45.0%
! GCCACTGCAATGACCTTTTT+CGG + chr1.3:75327058-75327077 None:intergenic 45.0%
! TCTTTTCTTCCACCAGAAGC+AGG + chr1.3:75328105-75328124 None:intergenic 45.0%
! TGAACTAGGTGGTGGTTGAT+AGG - chr1.3:75326584-75326603 MS.gene71826:CDS 45.0%
! TGATGATGTTGTGGAGGACT+TGG - chr1.3:75331187-75331206 MS.gene71826:intron 45.0%
! TGCGGCATCATCTTTTCTTG+AGG - chr1.3:75330143-75330162 MS.gene71826:intron 45.0%
! TTGGTGATTGTGGCACCATT+CGG - chr1.3:75328424-75328443 MS.gene71826:CDS 45.0%
! TTTAGCTCATCCTGGTTACC+TGG - chr1.3:75330945-75330964 MS.gene71826:intron 45.0%
! TTTAGGACAGCATGCCACTA+TGG - chr1.3:75327958-75327977 MS.gene71826:intron 45.0%
!! CCCTTAGGTTGAGATGTATC+CGG - chr1.3:75329522-75329541 MS.gene71826:CDS 45.0%
!! TCTCTTCATTTCTGGGGTAC+TGG - chr1.3:75328736-75328755 MS.gene71826:intron 45.0%
AATGAGGCAGCTTATTCGCG+AGG - chr1.3:75329952-75329971 MS.gene71826:intron 50.0%
CAGAGTAACTCCACAGTGCT+AGG + chr1.3:75329847-75329866 None:intergenic 50.0%
CATGGAAGATGGAGAACCAC+AGG - chr1.3:75327789-75327808 MS.gene71826:CDS 50.0%
CGTCATTGAACTTCTCGGAG+TGG - chr1.3:75328927-75328946 MS.gene71826:intron 50.0%
CGTGTGTTTGTGTATGCAGC+TGG + chr1.3:75331019-75331038 None:intergenic 50.0%
CTGTCCTAAAAGCCCTCATC+AGG + chr1.3:75327948-75327967 None:intergenic 50.0%
CTTCGTCTACGTCTACCCTA+TGG + chr1.3:75326494-75326513 None:intergenic 50.0%
CTTTGCCAATGCCTCCTGTA+GGG + chr1.3:75329640-75329659 None:intergenic 50.0%
GACTGTGCTTGTGTGTTTGC+TGG - chr1.3:75327503-75327522 MS.gene71826:CDS 50.0%
GAGTTGAATAGACCCCCTAC+AGG - chr1.3:75329623-75329642 MS.gene71826:intron 50.0%
GATGATGCCGCAGGATCATT+AGG + chr1.3:75330135-75330154 None:intergenic 50.0%
GATGCCAAAGAGAACGTGGA+TGG - chr1.3:75330912-75330931 MS.gene71826:intron 50.0%
GCACTGTGGAGTTACTCTGT+TGG - chr1.3:75329848-75329867 MS.gene71826:intron 50.0%
GTGCCACAATCACCAAGCAT+TGG + chr1.3:75328420-75328439 None:intergenic 50.0%
TGAGGATGCCAAAGAGAACG+TGG - chr1.3:75330908-75330927 MS.gene71826:intron 50.0%
TTGAAGCTTCCTGCTTCTGG+TGG - chr1.3:75328093-75328112 MS.gene71826:intron 50.0%
TTGAATAGACCCCCTACAGG+AGG - chr1.3:75329626-75329645 MS.gene71826:intron 50.0%
TTTGCCAATGCCTCCTGTAG+GGG + chr1.3:75329639-75329658 None:intergenic 50.0%
! CTGCTGCATTTAGCTCATCC+TGG - chr1.3:75330937-75330956 MS.gene71826:intron 50.0%
! GTTCCCTGATGAGGGCTTTT+AGG - chr1.3:75327941-75327960 MS.gene71826:intron 50.0%
!! CTAAATGATGGGTGACTGGC+TGG - chr1.3:75327077-75327096 MS.gene71826:intron 50.0%
!! CTGCTTTTCCTTCGCTCCTA+AGG - chr1.3:75328283-75328302 MS.gene71826:CDS 50.0%
!! CTTCATTTCTGGGGTACTGG+TGG - chr1.3:75328739-75328758 MS.gene71826:intron 50.0%
!! GTGGAGAGCATTTCCAAGGT+AGG + chr1.3:75328187-75328206 None:intergenic 50.0%
!! GTGGCTAAATGATGGGTGAC+TGG - chr1.3:75327073-75327092 MS.gene71826:intron 50.0%
ACCTAGCCGTGGGAACTAGA+CGG + chr1.3:75329496-75329515 None:intergenic 55.0%
ATGCGGTTCGTTCCCTGATG+AGG - chr1.3:75327932-75327951 MS.gene71826:CDS 55.0%
CGGCTAGGTACTTTCCCCTT+AGG - chr1.3:75329507-75329526 MS.gene71826:CDS 55.0%
GCTTTGCCAATGCCTCCTGT+AGG + chr1.3:75329641-75329660 None:intergenic 55.0%
TATGCAGGTAGCCGAGAGCT+TGG + chr1.3:75330298-75330317 None:intergenic 55.0%
TGCGGTTCGTTCCCTGATGA+GGG - chr1.3:75327933-75327952 MS.gene71826:CDS 55.0%
TTGCCAATGCCTCCTGTAGG+GGG + chr1.3:75329638-75329657 None:intergenic 55.0%
TTGCGGAACACCTAGCACTG+TGG - chr1.3:75329834-75329853 MS.gene71826:intron 55.0%
! AGTAGCCCGTCTAGTTCCCA+CGG - chr1.3:75329487-75329506 MS.gene71826:CDS 55.0%
! CGGCATTTTTCCCGGCAGAA+GGG + chr1.3:75331256-75331275 None:intergenic 55.0%
! TCGGCATTTTTCCCGGCAGA+AGG + chr1.3:75331257-75331276 None:intergenic 55.0%
!! AAGGGGAAAGTACCTAGCCG+TGG + chr1.3:75329507-75329526 None:intergenic 55.0%
!! AGGGGAAAGTACCTAGCCGT+GGG + chr1.3:75329506-75329525 None:intergenic 55.0%
!! CATTTCTGGGGTACTGGTGG+AGG - chr1.3:75328742-75328761 MS.gene71826:intron 55.0%
CCTAGCCGTGGGAACTAGAC+GGG + chr1.3:75329495-75329514 None:intergenic 60.0%
TCAAGCGACAGCCCTTCTGC+CGG - chr1.3:75331242-75331261 MS.gene71826:intron 60.0%
! AGACCCCCTACAGGAGGCAT+TGG - chr1.3:75329632-75329651 MS.gene71826:intron 60.0%
! GCAGAAGGGCTGTCGCTTGA+AGG + chr1.3:75331242-75331261 None:intergenic 60.0%
CAAGCGACAGCCCTTCTGCC+GGG - chr1.3:75331243-75331262 MS.gene71826:intron 65.0%
! CCCGTCTAGTTCCCACGGCT+AGG - chr1.3:75329492-75329511 MS.gene71826:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 75325953 75331361 75325953 ID=MS.gene71826
chr1.3 mRNA 75325953 75331361 75325953 ID=MS.gene71826.t1;Parent=MS.gene71826
chr1.3 exon 75331252 75331361 75331252 ID=MS.gene71826.t1.exon1;Parent=MS.gene71826.t1
chr1.3 CDS 75331252 75331361 75331252 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75330566 75330637 75330566 ID=MS.gene71826.t1.exon2;Parent=MS.gene71826.t1
chr1.3 CDS 75330566 75330637 75330566 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75328997 75329542 75328997 ID=MS.gene71826.t1.exon3;Parent=MS.gene71826.t1
chr1.3 CDS 75328997 75329542 75328997 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75328279 75328581 75328279 ID=MS.gene71826.t1.exon4;Parent=MS.gene71826.t1
chr1.3 CDS 75328279 75328581 75328279 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75327629 75327958 75327629 ID=MS.gene71826.t1.exon5;Parent=MS.gene71826.t1
chr1.3 CDS 75327629 75327958 75327629 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75327341 75327547 75327341 ID=MS.gene71826.t1.exon6;Parent=MS.gene71826.t1
chr1.3 CDS 75327341 75327547 75327341 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75327150 75327236 75327150 ID=MS.gene71826.t1.exon7;Parent=MS.gene71826.t1
chr1.3 CDS 75327150 75327236 75327150 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75326582 75326676 75326582 ID=MS.gene71826.t1.exon8;Parent=MS.gene71826.t1
chr1.3 CDS 75326582 75326676 75326582 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75326338 75326481 75326338 ID=MS.gene71826.t1.exon9;Parent=MS.gene71826.t1
chr1.3 CDS 75326338 75326481 75326338 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
chr1.3 exon 75325953 75326196 75325953 ID=MS.gene71826.t1.exon10;Parent=MS.gene71826.t1
chr1.3 CDS 75325953 75326196 75325953 ID=cds.MS.gene71826.t1;Parent=MS.gene71826.t1
Gene Sequence

>MS.gene71826

AGATTAATGTGGATGGAGAAAATAATGTAAAAAGAAAGAGCAAGAAAAATTCCACGGTTGTGATTGAAGCAAAGCAACATAAGGAGCAAATAGAAAATCTTCAGCACAAGGTTAGACCCATTACATTACATTACATTGTTGTTTCTTAGTATACTAAGATACCTGTGTATGCAACTTTGCTTGTTCTTATTTGAAGGATTCTCTTTAATTTATTGTCTGTTTCAGCTTATTTGCTTATAAATTTTGTTTAAATGTCTGAGCTATTTTCGGCTTATTTTCATAAGTTCTCTAAGATAGCTTATGAAAACAACTAATAGCTTAACAAAAACAATTTAACTTTATTTTATCTTTTTCTATTGAAATAGCTTATACATAAGTGTTTATCATGAGAAGCGCTTATGCTATAAGCTGCAAGTAAGCTGCTTATCCAAACAGGGCCTTAATAGCTAAATATAAGTTTTGTCCTTTCAAGCAATGTTTATCTCTAGGTTGTTTACGTTTATATAATTTTATTAGAGAAATTAGACATATTGCATGTCCATAGGGTAGACGTAGACGAAGACAAGTAAAGGTTTCAGTGAAGGTTTTGATAATTTAATTCACATTTGCAAATGCTTGTATGTGTGAAATTTGAACTAGGTGGTGGTTGATAGGGAATTACCTTTTATATATTTATTGGGCTACATTCTGTTAGCAATGTTATTAACAACCTTTTCCATTGCAGGACGAAGATTTTTATGAGTACTTGAAAGAGAATGACCCGGATCTGCTTAAGTTCAGTGATGACGATATTGATGTATGTTTCATTTTAACACTTCCTATCTAATATCTGTCTTGTTTTTGCTTCATACATTAATTGAGATGAATATGGTTCTGTGATGCATTGAGCCATTGATGTGAGATGTGTATTTCAAATGAATGATATGCAGTATCTTCTAATGCCATCCTAGATATGGGAAAAAAATTCTTAGCTACTAAGCTTGCATTGGTTATCAATCTCTTCTGCTTCATACTTTTGTTTGTTTTGTATTAGGAAGATGTGGGTGCTAAGCTTGCATTGTTTGTTATCTTACCCAATATTTCTTTTTCCTTTTTTTTTCATCCGAAAAAGGTCATTGCAGTGGCTAAATGATGGGTGACTGGCTGGTTTCCCTTTAGAGACATGTTTGTGGCACAACACAACGAAATGTAAATTCAAGGCAAATGCTAACATGTGCTCTAAGGGCACATGTTTAGAAACTCAATAAAGAAACATTCATCATAAAAGTCATGCATTCAACTTTTAAAATTATTTTTTCATTGCAAAAGTTCCATTTTGTGTTCATTATTGGTAACCCACCAATCACTACAAATTTAATTTTTGCTTCTTGAGATTTGTATTTTTTTAGACCTATAGGCTATAAATCTTTTAGGTTAAGGTTATGGTTCTCCTATTAGATTTTGAGAAGACACTTGGGGTAGAGTCATGATATTTATTGAATCTCTTGTAAGCTATAGATGGTTTTACTTGAAATTTATGATCTATCCTTTAATCAAGATAGAAAATTTTGGACTGTGCTTGTGTGTTTGCTGGTAAATTGGTTGAAGAGGAATGCCGGTATTGTCAAGATTGCTCCTTTTTGCTGTTATGTTATATAGGATTTCACGTTCATCAACTATATTTCGTGCAGTGATCATAATTTGTAGGAAATCTCAAGAGATTGGTTTCAGTCTATTTTTTTTTTCTGTTACCTATTTGCATGCATTACTAAATTGCTATCAGTGTGACACTTTGTTAGCAATAGAAACTATATATAACTGTTTCGCTTCTTTTATCCAGGAAGATGTGGATGATGACATGGAAGATGGAGAACCACAGGTAGATGAGAAGGCTATTGAGCATGAGGTTCAAGCAAAGGATAAAAAACGTTCTAATAAAGTTATAACCACTTCTATGGTTGATTTGTGGTGCAAATCAATTAAAGAAAATGGGAGCTTAAATGCGGTTCGTTCCCTGATGAGGGCTTTTAGGACAGCATGCCACTATGGTGATGATGATGAGAATGATTCTACAGCAAAGCTTAGTGTAATGTCTAGCGTTGTGTTCAACAAAATAATGTTGACTGTACTTAATGAAATGGATGGAATACTAAGAAAATTGTTGAAGCTTCCTGCTTCTGGTGGAAGAAAAGAGATCATAATGGATTTGATGACTACAAAACAATGGAGGACTTATGGCCATATTGTGAAGTCCTACCTTGGAAATGCTCTCCACATTTTGAATCAAATGACTGACTCGCAAATGATATCATTTACTTTACATCGGCTAAAATATTCTTCATTGTTGTTGGCTGCTTTTCCTTCGCTCCTAAGGAAATATATCAAGGTACAAATAGTTCATTGGTCACCTCATCATTGTTCACTACAAAATTCATAGATGAGCATTAGTACTTTAAAGTTTGTGGCTCTGTACTGAATATGTCTTCCAATGCTTGGTGATTGTGGCACCATTCGGTCTTGTGCAGTAATTGATTAAAAAGCTTAATAGATGGACAGAAATCAACTAAATTTTTCTGAAATCTGGATCATATAAATGATACATTTTTCCGTACTCGAACAAAATTAAGAATAGTATCATTCGGTAAACTTGCTGTTGCATGCAGTTTTTTTCCCTTGTAAGTATATACTTCTGGTAATGTGAATGAAAAGGCTTCAATGCAAAGAACATTTGTGACTTGCTAGGACATAACTTAACATATGTCTATTCATTTGGTAAATTACTTTCTTGTTGAAATTATCAGGTGTCTCTTCATTTCTGGGGTACTGGTGGAGGTGCCCTTCCTGTTGTTTCGTGTCTATTCATGAGAGAGTTGTGCATCTGTATTGGATCTGGCTGCATAGATGATTGCTTTAAAGGAATATATAAAGCCTATGTTTTGAATTGCCATTTCGTAAATGCTGTGAAACTTAAACATATTCGTTTTCTTAGCAACTGCGTCATTGAACTTCTCGGAGTGGATCTTCCGACTGCATATCAACACGCCTTCATTTTCATTCGACAGTTGGCCATGATTTTAAGGGATGCACTTAATACAAAAACTAAGGTGCTGTTTATTTGTTCACTATATGTTATTTTCTTTCTTGTAACTGTAAGAAGTGCCTCGTAACATTTTGCTGCTAGAGGGATACAATCAATCACCTGGAACCAATCCTAACAATTGATCTATCCTGACTTATGAGCTTGACACTTCCGTATCTCATTAGTAATGAGTAAAGGAAATGTGACCAGACATTCCTTGATAGATTTGTTTTATTCGTGTTTGATTGGAGCTTTTCACTAATCAAAACAAATTGTTTGTGCATTTTTGACAATTTTATTTTATGGTTCTTACGTTGCTCTTCTTCGTCTGAATGTTTTCTTTAGGAAGCTTTTCGCAAGGTTTATGAATGGAAGTTCATTAACTCTCTTGAGCTTTGGACTGATGCTATCCGTGCTTATAGTTCACAATCTGACTTTAAGCAACTTGCATATCCACTGACCCAAATAATTTTTGGAGTAGCCCGTCTAGTTCCCACGGCTAGGTACTTTCCCCTTAGGTTGAGATGTATCCGGATGTTGAACCAGATTGCTGCTTCTACCCATTCTTTTGTACCAGTATCTATGCTCCTTTTGGATATGCTGGAGATGAAAGAGTTGAATAGACCCCCTACAGGAGGCATTGGCAAAGCTGTTGATTTACGCAGCATATTGAAGGTACTCGTTACTTGGTGAAATTGTGCATTTGTTGAAAACTTTAAATCCACCTAACCTTTTAAAGGTATTCTTGCATATTAGGTTAGCAAGCCAACTCTTAAGACACGGGCATTTCAAGAGGCTTGTGTTTTTTCTGTGGTTGAAGAACTTGCGGAACACCTAGCACTGTGGAGTTACTCTGTTGGGTTCATGGAGTTGTCTTTTATTCCAATTGTGAGGTTGCGCAACTTTTGCAAATTGACCAAAGTTGAAAGGTTTCGAAGAGAAATGAGGCAGCTTATTCGCGAGGTATCTTATTAAAAAGATCATAAACCTTTTATGTTTTACTTTTATCATTGGCATGCATCAGATTTTGTGGCATTCGTCTCTAATATTTAATTTTCCACACTCAGATTGAGGCTAATGTCCAGTTTGTGAATGAAAAGCGCATGTCGATTTCCTTTCTACCTAATGATCCTGCGGCATCATCTTTTCTTGAGGTTTGCTCAGATTTTCTCTTTACTTTTGAGGAATGAGTGAGAGTATTGATTGTTTCCTTGTTGGATGTTGGTTGACCTTTTTCATTCATTTGTTTACTTACATTGTAGCCTGCTCCATGTTTCAATTCTTCCAAGCTCTCGGCTACCTGCATAAAAACTTTTTTCCTTAAGCAAATAAACTTCTATAGGTTGTTACTTTATTACTGAAGACCAATGAAGTGACTGACGATGCTATTAAGTTATTTCATTTTGGTCTATATATCTGGCTAAACACTATCGTATGGTGGGAATTGAATGAAGTCATTTTATTGATGTTTAATGTTTTTGTGTTGCCATTTTCTTTTCCTTTATTTTATTATATCAAGTGTGTATAGATTATCGTCCCACTTATTTCACGCCTCAATGTCACTTTACTTTAAATTAAATGCCCATTTATATTTGAGAATTGTAAACAGTCAACTTGATTTTGATAGGATGAGAAGAAGTCAGCCTCTAGTGCACTATCAAAGTATGTTATAACACTCCGCCAGAGAGCAAAACAAAAAAACGACTCATTAAAGGAATCCAGGTTTGAATTTTAAATTCACCTCCATTCTCATGGATTACTGTGTCCAACATGCATACATCATTATCATATATGTTTCTTATATAACTTAAAAAATTTCCAGTGTTCTTGTTGGAGAAGAATCCTCTGTTTTTGGTGATGAAGAATCAGCAAGTGATGAGGAGGATACTAAAGAGAATGAGGATGCCAAAGAGAACGTGGATGGAACTGCTGCATTTAGCTCATCCTGGTTACCTGGAAATGACAAGTATTGCTCTTTTTCTTTGTTCATCTTTCACTGACAAACCCAGCTGCATACACAAACACACGTACATTCGTGCACATACTACACGATGACATTAACACAAATTTCTTTTTACTTTTTATCTGAGGAATGCTTTGCTTTCAGGATAAAACAACAGCCTACTGAACCAAAAGGAAAGAGGAAAAAGCATAAAAAAGAAAGAACTGCCATTGATGATGATGTTGTGGAGGACTTGGTACTTAGTTCTGATGAAGATGAAGATTTGCCTTCAAGCGACAGCCCTTCTGCCGGGAAAAATGCCGATGTTGATCATCATTCATCTCCAAAACAAAACCGCAAGACAAAGCATAAAACAAAAAGGTTGAAAAGGAATAAATCTCACACCTAA

Protein sequence

>MS.gene71826.t1

RLMWMEKIMUKERARKIPRLULKQSNIRSKUKIFSTRTKIFMSTUKRMTRICLSSVMTILMKMWMMTWKMENHRUMRRLLSMRFKQRIKNVLIKLUPLLWLICGANQLKKMGAUMRFVPUUGLLGQHATMVMMMRMILQQSLVUCLALCSTKUCULYLMKWMEYUENCUSFLLLVEEKRSUWIUULQNNGGLMAILUSPTLEMLSTFUIKULTRKUYHLLYIGUNILHCCWLLFLRSUGNISRCLFISGVLVEVPFLLFRVYSUESCASVLDLAAUMIALKEYIKPMFUIAISUMLUNLNIFVFLATASLNFSEWIFRLHINTPSFSFDSWPUFUGMHLIQKLRKLFARFMNGSSLTLLSFGLMLSVLIVHNLTLSNLHIHUPKUFLEUPVUFPRLGTFPLGUDVSGCUTRLLLLPILLYQYLCSFWICWRUKSUIDPLQEALAKLLIYAAYURLASQLLRHGHFKRLVFFLWLKNLRNTUHCGVTLLGSWSCLLFQLUGCATFANUPKLKGFEEKUGSLFARLRLMSSLUMKSACRFPFYLMILRHHLFLRMRRSQPLVHYQSMLUHSAREQNKKTTHURNPVFLLEKNPLFLVMKNQQVMRRILKRMRMPKRTWMELLHLAHPGYLEMTRUNNSLLNQKERGKSIKKKELPLMMMLWRTWYLVLMKMKICLQATALLPGKMPMLIIIHLQNKTARQSIKQKGUKGINLTP