Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85979.t1 | XP_024627594.1 | 89.3 | 234 | 24 | 1 | 6 | 239 | 4 | 236 | 3.70E-106 | 394.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85979.t1 | O81223 | 60.1 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 2.2e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85979.t1 | G8A2Y4 | 89.3 | 234 | 24 | 1 | 6 | 239 | 4 | 236 | 2.7e-106 | 394.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene85979 | 0.812336 | 4.46E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene85979 | 0.818299 | 2.11E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene85979 | 0.807565 | 4.75E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene85979 | 0.827608 | 1.42E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene85979 | 0.827695 | 1.36E-54 | -1.69E-46 |
| MS.gene051597 | MS.gene85979 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene85979 | 0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene051832 | MS.gene85979 | 0.804247 | 2.37E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene85979 | 0.801698 | 7.96E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene85979 | 0.823939 | 1.06E-53 | -1.69E-46 |
| MS.gene052685 | MS.gene85979 | 0.82074 | 5.85E-53 | -1.69E-46 |
| MS.gene052889 | MS.gene85979 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene85979 | 0.827288 | 1.70E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene85979 | 0.810796 | 9.65E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene85979 | 0.854898 | 9.06E-62 | -1.69E-46 |
| MS.gene054222 | MS.gene85979 | 0.859552 | 3.82E-63 | -1.69E-46 |
| MS.gene054328 | MS.gene85979 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene85979 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene85979 | 0.801529 | 8.63E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene85979 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene85979 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene85979 | 0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene055147 | MS.gene85979 | 0.81314 | 2.98E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene85979 | 0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene85979 | 0.810691 | 1.02E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene85979 | 0.804884 | 1.74E-49 | -1.69E-46 |
| MS.gene055801 | MS.gene85979 | 0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene85979 | 0.808148 | 3.57E-50 | -1.69E-46 |
| MS.gene05624 | MS.gene85979 | 0.804461 | 2.14E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene85979 | 0.802334 | 5.89E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene85979 | 0.802373 | 5.79E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene85979 | 0.817273 | 3.59E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene85979 | 0.845466 | 3.99E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene85979 | 0.83362 | 4.80E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene85979 | 0.809001 | 2.35E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene85979 | -0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene85979 | 0.815674 | 8.19E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene85979 | 0.822507 | 2.28E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene85979 | 0.820887 | 5.41E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene85979 | 0.808414 | 3.13E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene85979 | 0.837344 | 5.49E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene85979 | -0.847777 | 9.33E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene85979 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene85979 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene85979 | 0.817305 | 3.53E-52 | -1.69E-46 |
| MS.gene06018 | MS.gene85979 | 0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene85979 | 0.82536 | 4.89E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene85979 | 0.800053 | 1.73E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene85979 | 0.807804 | 4.23E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene85979 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene85979 | 0.826911 | 2.09E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene85979 | 0.803733 | 3.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85979.t1 | MTR_8g027620 | 93.724 | 239 | 12 | 2 | 1 | 239 | 1 | 236 | 1.87e-160 | 446 |
| MS.gene85979.t1 | MTR_3g091440 | 69.388 | 196 | 60 | 0 | 42 | 237 | 17 | 212 | 2.80e-95 | 278 |
| MS.gene85979.t1 | MTR_3g091440 | 66.842 | 190 | 63 | 0 | 48 | 237 | 24 | 213 | 2.50e-88 | 261 |
| MS.gene85979.t1 | MTR_8g099575 | 62.051 | 195 | 74 | 0 | 42 | 236 | 16 | 210 | 1.82e-84 | 250 |
| MS.gene85979.t1 | MTR_4g099210 | 56.923 | 195 | 84 | 0 | 42 | 236 | 16 | 210 | 2.15e-77 | 233 |
| MS.gene85979.t1 | MTR_1g016430 | 57.216 | 194 | 83 | 0 | 41 | 234 | 54 | 247 | 4.60e-76 | 230 |
| MS.gene85979.t1 | MTR_3g060730 | 53.659 | 205 | 93 | 1 | 35 | 237 | 22 | 226 | 2.72e-75 | 228 |
| MS.gene85979.t1 | MTR_4g134250 | 54.922 | 193 | 87 | 0 | 45 | 237 | 35 | 227 | 3.57e-75 | 227 |
| MS.gene85979.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 7.76e-75 | 226 |
| MS.gene85979.t1 | MTR_8g099570 | 52.551 | 196 | 93 | 0 | 42 | 237 | 58 | 253 | 7.11e-73 | 223 |
| MS.gene85979.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 1 | 181 | 2.61e-72 | 218 |
| MS.gene85979.t1 | MTR_2g027500 | 49.315 | 219 | 101 | 1 | 19 | 237 | 16 | 224 | 3.19e-72 | 220 |
| MS.gene85979.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 54 | 237 | 5 | 188 | 1.37e-71 | 217 |
| MS.gene85979.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 99 | 279 | 2.86e-71 | 219 |
| MS.gene85979.t1 | MTR_2g027440 | 53.226 | 186 | 87 | 0 | 51 | 236 | 43 | 228 | 3.51e-67 | 207 |
| MS.gene85979.t1 | MTR_3g091440 | 71.631 | 141 | 40 | 0 | 42 | 182 | 17 | 157 | 7.27e-66 | 202 |
| MS.gene85979.t1 | MTR_2g027480 | 52.688 | 186 | 88 | 0 | 51 | 236 | 43 | 228 | 1.29e-65 | 203 |
| MS.gene85979.t1 | MTR_2g027520 | 50.262 | 191 | 95 | 0 | 47 | 237 | 41 | 231 | 2.22e-63 | 197 |
| MS.gene85979.t1 | MTR_8g016170 | 53.226 | 186 | 87 | 0 | 47 | 232 | 66 | 251 | 3.37e-63 | 198 |
| MS.gene85979.t1 | MTR_5g013560 | 48.485 | 198 | 91 | 1 | 42 | 239 | 15 | 201 | 2.26e-60 | 189 |
| MS.gene85979.t1 | MTR_8g016170 | 54.070 | 172 | 79 | 0 | 47 | 218 | 47 | 218 | 1.05e-58 | 185 |
| MS.gene85979.t1 | MTR_4g113505 | 45.109 | 184 | 101 | 0 | 53 | 236 | 6 | 189 | 1.03e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85979.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 5.13e-91 | 267 |
| MS.gene85979.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 5.13e-91 | 267 |
| MS.gene85979.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 5.13e-91 | 267 |
| MS.gene85979.t1 | AT5G24270 | 63.441 | 186 | 68 | 0 | 51 | 236 | 4 | 189 | 5.05e-84 | 249 |
| MS.gene85979.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 4.09e-80 | 239 |
| MS.gene85979.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 4.09e-80 | 239 |
| MS.gene85979.t1 | AT1G64480 | 60.513 | 195 | 77 | 0 | 42 | 236 | 20 | 214 | 4.09e-80 | 239 |
| MS.gene85979.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 53 | 246 | 1.77e-75 | 229 |
| MS.gene85979.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 63 | 256 | 3.67e-75 | 228 |
| MS.gene85979.t1 | AT5G47100 | 56.316 | 190 | 83 | 0 | 47 | 236 | 21 | 210 | 4.05e-74 | 224 |
| MS.gene85979.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 7.63e-74 | 223 |
| MS.gene85979.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 7.63e-74 | 223 |
| MS.gene85979.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 7.63e-74 | 223 |
| MS.gene85979.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 8.29e-74 | 224 |
| MS.gene85979.t1 | AT5G24270 | 62.733 | 161 | 60 | 0 | 76 | 236 | 7 | 167 | 5.55e-73 | 220 |
| MS.gene85979.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 1.85e-72 | 220 |
| MS.gene85979.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 1.85e-72 | 220 |
| MS.gene85979.t1 | AT1G64480 | 61.017 | 177 | 69 | 0 | 42 | 218 | 20 | 196 | 1.01e-71 | 218 |
| MS.gene85979.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 43 | 237 | 32 | 230 | 1.39e-71 | 218 |
| MS.gene85979.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 42 | 222 | 16 | 196 | 2.31e-66 | 206 |
| MS.gene85979.t1 | AT4G01420 | 49.246 | 199 | 101 | 0 | 31 | 229 | 4 | 202 | 2.48e-64 | 199 |
| MS.gene85979.t1 | AT4G16350 | 52.151 | 186 | 85 | 1 | 47 | 232 | 34 | 215 | 4.28e-62 | 194 |
| MS.gene85979.t1 | AT4G16350 | 52.151 | 186 | 85 | 1 | 47 | 232 | 34 | 215 | 4.28e-62 | 194 |
| MS.gene85979.t1 | AT4G01420 | 49.468 | 188 | 95 | 0 | 31 | 218 | 4 | 191 | 1.67e-60 | 189 |
| MS.gene85979.t1 | AT4G17615 | 54.140 | 157 | 72 | 0 | 80 | 236 | 12 | 168 | 8.26e-60 | 186 |
| MS.gene85979.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 1.26e-55 | 177 |
| MS.gene85979.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 2.64e-48 | 157 |
| MS.gene85979.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 43 | 186 | 53 | 196 | 3.37e-48 | 158 |
| MS.gene85979.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 4.84e-48 | 157 |
| MS.gene85979.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 4.84e-48 | 157 |
| MS.gene85979.t1 | AT4G33000 | 55.435 | 92 | 41 | 0 | 43 | 134 | 53 | 144 | 6.84e-26 | 99.4 |
Find 36 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.2:-70111121 | None:intergenic |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | 8.2:-70111837 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.2:+70109685 | MS.gene85979:CDS |
| GGAGATGGTGTTGATGGTTT+TGG | 0.329380 | 8.2:+70111445 | MS.gene85979:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.2:-70111075 | None:intergenic |
| AACAACGGCCATATAGAGTT+TGG | 0.408503 | 8.2:+70111067 | MS.gene85979:CDS |
| GGCGAATTTATCAGATCCTT+GGG | 0.409624 | 8.2:+70111088 | MS.gene85979:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | 8.2:+70111309 | MS.gene85979:CDS |
| TGGCGAATTTATCAGATCCT+TGG | 0.418944 | 8.2:+70111087 | MS.gene85979:CDS |
| GTTGAAGGAGATGGTGTTGA+TGG | 0.420723 | 8.2:+70111439 | MS.gene85979:intron |
| AAACTACGAGTATGATTCTT+CGG | 0.432593 | 8.2:-70111861 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.2:-70111692 | None:intergenic |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.2:-70109714 | None:intergenic |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.2:-70111719 | None:intergenic |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.2:+70110378 | MS.gene85979:CDS |
| GCGAAACCTCTTTGTGGATA+GGG | 0.504445 | 8.2:+70110631 | MS.gene85979:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | 8.2:+70111478 | MS.gene85979:CDS |
| AAACAAGCGAAACCTCTTTG+TGG | 0.525654 | 8.2:+70110625 | MS.gene85979:CDS |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | 8.2:+70111620 | MS.gene85979:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.530325 | 8.2:+70111662 | MS.gene85979:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.2:+70109689 | MS.gene85979:CDS |
| AGCGAAACCTCTTTGTGGAT+AGG | 0.555448 | 8.2:+70110630 | MS.gene85979:CDS |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8.2:+70111301 | MS.gene85979:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.2:+70109704 | MS.gene85979:CDS |
| AAATTTACAGTTGAAGGAGA+TGG | 0.569253 | 8.2:+70111430 | MS.gene85979:intron |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.2:+70110363 | MS.gene85979:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.2:-70109799 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.2:+70111499 | MS.gene85979:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.615893 | 8.2:-70110637 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.2:+70111493 | MS.gene85979:CDS |
| GAAACAGACACAAAAGGTGA+CGG | 0.637440 | 8.2:+70111626 | MS.gene85979:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | 8.2:-70111836 | None:intergenic |
| CTCTTCGATGTCAATAACAA+CGG | 0.649512 | 8.2:+70111052 | MS.gene85979:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.2:+70110366 | MS.gene85979:intron |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.2:+70111329 | MS.gene85979:CDS |
| TTTAGGATGAAAGATGCCCA+AGG | 0.697078 | 8.2:-70111104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACATGAAA+AGG | + | chr8.2:70109910-70109929 | MS.gene85979:intron | 10.0% |
| !! | AAAAAAAAAAAAACATGAAA+AGG | - | chr8.2:70109929-70109910 | None:intergenic | 10.0% |
| !!! | ATCACTTTATAAATTTTATA+AGG | + | chr8.2:70111553-70111572 | MS.gene85979:intron | 10.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.2:70110031-70110050 | MS.gene85979:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.2:70110010-70110029 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.2:70110032-70110051 | MS.gene85979:intron | 15.0% |
| !!! | AAAGTTTCTTATATATGTTT+TGG | + | chr8.2:70111576-70111595 | MS.gene85979:intron | 15.0% |
| !!! | AAGTTTCTTATATATGTTTT+GGG | + | chr8.2:70111577-70111596 | MS.gene85979:intron | 15.0% |
| !!! | AATTTTTGATTCTAATTTCA+GGG | + | chr8.2:70111796-70111815 | MS.gene85979:intron | 15.0% |
| !!! | TGACAATTGTTTAAATATTT+TGG | + | chr8.2:70111398-70111417 | MS.gene85979:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.2:70111722-70111741 | None:intergenic | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.2:70109685-70109704 | MS.gene85979:CDS | 20.0% |
| !! | ATAAACAAGTTAAATTTCCA+AGG | - | chr8.2:70109866-70109885 | None:intergenic | 20.0% |
| !! | TATGCATATATAAGTCATTT+GGG | + | chr8.2:70111222-70111241 | MS.gene85979:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.2:70110033-70110052 | MS.gene85979:intron | 20.0% |
| !! | TTATGCATATATAAGTCATT+TGG | + | chr8.2:70111221-70111240 | MS.gene85979:intron | 20.0% |
| !!! | AGTTTCTTATATATGTTTTG+GGG | + | chr8.2:70111578-70111597 | MS.gene85979:intron | 20.0% |
| !!! | CAATTTTTGATTCTAATTTC+AGG | + | chr8.2:70111795-70111814 | MS.gene85979:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGTTGCCT+TGG | + | chr8.2:70109846-70109865 | MS.gene85979:intron | 20.0% |
| ! | AAACACTTGTGAAACTATTT+GGG | + | chr8.2:70110113-70110132 | MS.gene85979:intron | 25.0% |
| ! | AAATAGTTTCACAAGTGTTT+AGG | - | chr8.2:70110113-70110132 | None:intergenic | 25.0% |
| ! | ACATGAAAATTTACAGTTGA+AGG | + | chr8.2:70111424-70111443 | MS.gene85979:intron | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | + | chr8.2:70111301-70111320 | MS.gene85979:CDS | 25.0% |
| ! | GAAATAAGCATGTAAGTATT+TGG | + | chr8.2:70110796-70110815 | MS.gene85979:intron | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | + | chr8.2:70109959-70109978 | MS.gene85979:intron | 25.0% |
| ! | TAAACACTTGTGAAACTATT+TGG | + | chr8.2:70110112-70110131 | MS.gene85979:intron | 25.0% |
| ! | TATTCATATACAATTGGTGA+TGG | - | chr8.2:70110312-70110331 | None:intergenic | 25.0% |
| ! | TCGTGGTAAAAATTGAATTT+GGG | - | chr8.2:70110960-70110979 | None:intergenic | 25.0% |
| ! | TTCGTGGTAAAAATTGAATT+TGG | - | chr8.2:70110961-70110980 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.2:70110432-70110451 | MS.gene85979:CDS | 25.0% |
| !! | GATAATTTCATGGATTACTT+TGG | + | chr8.2:70109969-70109988 | MS.gene85979:intron | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.2:70109746-70109765 | None:intergenic | 25.0% |
| !!! | GTTTCTTATATATGTTTTGG+GGG | + | chr8.2:70111579-70111598 | MS.gene85979:intron | 25.0% |
| !!! | TTTCTTATATATGTTTTGGG+GGG | + | chr8.2:70111580-70111599 | MS.gene85979:intron | 25.0% |
| AAATTTACAGTTGAAGGAGA+TGG | + | chr8.2:70111430-70111449 | MS.gene85979:intron | 30.0% | |
| AGCACAGTTATTGTGAAAAA+TGG | + | chr8.2:70110418-70110437 | MS.gene85979:CDS | 30.0% | |
| ATCCAAACAGAACCTTAAAT+TGG | + | chr8.2:70110234-70110253 | MS.gene85979:intron | 30.0% | |
| ATCGGATGTGAATAAAAAAG+AGG | - | chr8.2:70110932-70110951 | None:intergenic | 30.0% | |
| GGTAAAAATTGAATTTGGGA+TGG | - | chr8.2:70110956-70110975 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.2:70109689-70109708 | MS.gene85979:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.2:70111078-70111097 | None:intergenic | 30.0% | |
| TGTGTATTGTGTATGTTAAC+AGG | + | chr8.2:70110571-70110590 | MS.gene85979:intron | 30.0% | |
| TGTTTGCATAAACGAAAACA+CGG | - | chr8.2:70110271-70110290 | None:intergenic | 30.0% | |
| TTGTTAGGAAGAGCTTATTT+GGG | + | chr8.2:70110763-70110782 | MS.gene85979:intron | 30.0% | |
| ! | AACCAATTTAAGGTTCTGTT+TGG | - | chr8.2:70110239-70110258 | None:intergenic | 30.0% |
| ! | AATTGAATTTGGGATGGAAT+CGG | - | chr8.2:70110950-70110969 | None:intergenic | 30.0% |
| ! | GAAAAATTGACTTCGAAGAA+TGG | + | chr8.2:70111648-70111667 | MS.gene85979:CDS | 30.0% |
| ! | TTTCTAGAAACAGACACAAA+AGG | + | chr8.2:70111620-70111639 | MS.gene85979:CDS | 30.0% |
| !! | ATTATCAACACTTGTTTTCG+TGG | - | chr8.2:70110977-70110996 | None:intergenic | 30.0% |
| !! | CACTTTGCTCTTTTTAGAAA+CGG | + | chr8.2:70110602-70110621 | MS.gene85979:CDS | 30.0% |
| !! | CATATTATTTTGTCTGCTTG+AGG | - | chr8.2:70111133-70111152 | None:intergenic | 30.0% |
| !! | GGAAGCTTTAGATAATTTCA+TGG | + | chr8.2:70109931-70109950 | MS.gene85979:intron | 30.0% |
| AACAACTTCTGAATGGCATT+TGG | - | chr8.2:70110748-70110767 | None:intergenic | 35.0% | |
| AAGAGGATGAAGAGAATGAA+CGG | - | chr8.2:70110915-70110934 | None:intergenic | 35.0% | |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.2:70110066-70110085 | None:intergenic | 35.0% | |
| AATGCCATTCAGAAGTTGTT+AGG | + | chr8.2:70110748-70110767 | MS.gene85979:intron | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.2:70110486-70110505 | MS.gene85979:intron | 35.0% | |
| AGAGAAGAGTTTCAGAACAA+TGG | - | chr8.2:70110339-70110358 | None:intergenic | 35.0% | |
| CTCTTCGATGTCAATAACAA+CGG | + | chr8.2:70111052-70111071 | MS.gene85979:CDS | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.2:70111763-70111782 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.2:70111662-70111681 | MS.gene85979:CDS | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.2:70109818-70109837 | None:intergenic | 35.0% | |
| GGACGCTATTCATATACAAT+TGG | - | chr8.2:70110318-70110337 | None:intergenic | 35.0% | |
| GGTGGAAATGAACCAATTTA+AGG | - | chr8.2:70110249-70110268 | None:intergenic | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.2:70111695-70111714 | None:intergenic | 35.0% | |
| GTTGTTAGGAAGAGCTTATT+TGG | + | chr8.2:70110762-70110781 | MS.gene85979:intron | 35.0% | |
| GTTTGCATAAACGAAAACAC+GGG | - | chr8.2:70110270-70110289 | None:intergenic | 35.0% | |
| TATATTGTACGAAAGACCAC+AGG | - | chr8.2:70111363-70111382 | None:intergenic | 35.0% | |
| TCACCACGTAAAATTCTTCT+TGG | + | chr8.2:70111272-70111291 | MS.gene85979:intron | 35.0% | |
| TCTTCCTAACAACTTCTGAA+TGG | - | chr8.2:70110755-70110774 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.2:70111493-70111512 | MS.gene85979:CDS | 35.0% | |
| TTAGAGCTAACAATCAGTTC+TGG | + | chr8.2:70110188-70110207 | MS.gene85979:intron | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | + | chr8.2:70111309-70111328 | MS.gene85979:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.2:70110060-70110079 | MS.gene85979:intron | 35.0% |
| !! | CATATACAATTGGTGATGGA+TGG | - | chr8.2:70110308-70110327 | None:intergenic | 35.0% |
| !!! | CATGGATTACTTTGGTTTTG+TGG | + | chr8.2:70109977-70109996 | MS.gene85979:intron | 35.0% |
| !!! | GGCATTTGGCATAAGTTTTT+TGG | - | chr8.2:70110734-70110753 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTTGAATCTGATT+TGG | + | chr8.2:70111460-70111479 | MS.gene85979:CDS | 35.0% |
| AAACAAGCGAAACCTCTTTG+TGG | + | chr8.2:70110625-70110644 | MS.gene85979:CDS | 40.0% | |
| AACAACGGCCATATAGAGTT+TGG | + | chr8.2:70111067-70111086 | MS.gene85979:CDS | 40.0% | |
| AGAGGATGAAGAGAATGAAC+GGG | - | chr8.2:70110914-70110933 | None:intergenic | 40.0% | |
| AGATGATCAACATCCTGGAA+TGG | - | chr8.2:70111202-70111221 | None:intergenic | 40.0% | |
| AGCTGTTTGTTTACCATTCC+AGG | + | chr8.2:70111186-70111205 | MS.gene85979:intron | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.2:70109717-70109736 | None:intergenic | 40.0% | |
| GAAACAGACACAAAAGGTGA+CGG | + | chr8.2:70111626-70111645 | MS.gene85979:CDS | 40.0% | |
| GAAGAGATCAAACATCTGCA+TGG | - | chr8.2:70111038-70111057 | None:intergenic | 40.0% | |
| GCATAAGATGATCAACATCC+TGG | - | chr8.2:70111207-70111226 | None:intergenic | 40.0% | |
| GGCGAATTTATCAGATCCTT+GGG | + | chr8.2:70111088-70111107 | MS.gene85979:CDS | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.2:70111499-70111518 | MS.gene85979:CDS | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | - | chr8.2:70111839-70111858 | None:intergenic | 40.0% | |
| TGGCGAATTTATCAGATCCT+TGG | + | chr8.2:70111087-70111106 | MS.gene85979:CDS | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | - | chr8.2:70111840-70111859 | None:intergenic | 40.0% | |
| ! | CTGCCAAGAAGAATTTTACG+TGG | - | chr8.2:70111278-70111297 | None:intergenic | 40.0% |
| ! | TTTAGGATGAAAGATGCCCA+AGG | - | chr8.2:70111107-70111126 | None:intergenic | 40.0% |
| !! | TTTGGTTCTCTCTGATGATG+TGG | + | chr8.2:70111478-70111497 | MS.gene85979:CDS | 40.0% |
| AGCGAAACCTCTTTGTGGAT+AGG | + | chr8.2:70110630-70110649 | MS.gene85979:CDS | 45.0% | |
| AGGGGTTGCATACCATCTTA+AGG | + | chr8.2:70110051-70110070 | MS.gene85979:intron | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.2:70109704-70109723 | MS.gene85979:CDS | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | + | chr8.2:70111344-70111363 | MS.gene85979:intron | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.2:70110378-70110397 | MS.gene85979:CDS | 45.0% | |
| GCGAAACCTCTTTGTGGATA+GGG | + | chr8.2:70110631-70110650 | MS.gene85979:CDS | 45.0% | |
| GGGGTTGCATACCATCTTAA+GGG | + | chr8.2:70110052-70110071 | MS.gene85979:intron | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.2:70109802-70109821 | None:intergenic | 45.0% | |
| TGCATAAACGAAAACACGGG+TGG | - | chr8.2:70110267-70110286 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.2:70110640-70110659 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.2:70111124-70111143 | None:intergenic | 45.0% | |
| ! | GTTGAAGGAGATGGTGTTGA+TGG | + | chr8.2:70111439-70111458 | MS.gene85979:intron | 45.0% |
| !!! | GGAGATGGTGTTGATGGTTT+TGG | + | chr8.2:70111445-70111464 | MS.gene85979:CDS | 45.0% |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.2:70110366-70110385 | MS.gene85979:intron | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.2:70110363-70110382 | MS.gene85979:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.2:70110366-70110385 | None:intergenic | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | + | chr8.2:70111329-70111348 | MS.gene85979:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 70109662 | 70111880 | 70109662 | ID=MS.gene85979 |
| chr8.2 | mRNA | 70109662 | 70111880 | 70109662 | ID=MS.gene85979.t1;Parent=MS.gene85979 |
| chr8.2 | exon | 70109662 | 70109818 | 70109662 | ID=MS.gene85979.t1.exon1;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70109662 | 70109818 | 70109662 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70110371 | 70110453 | 70110371 | ID=MS.gene85979.t1.exon2;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70110371 | 70110453 | 70110371 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70110593 | 70110652 | 70110593 | ID=MS.gene85979.t1.exon3;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70110593 | 70110652 | 70110593 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70111043 | 70111151 | 70111043 | ID=MS.gene85979.t1.exon4;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70111043 | 70111151 | 70111043 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70111298 | 70111350 | 70111298 | ID=MS.gene85979.t1.exon5;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70111298 | 70111350 | 70111298 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70111440 | 70111520 | 70111440 | ID=MS.gene85979.t1.exon6;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70111440 | 70111520 | 70111440 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70111617 | 70111729 | 70111617 | ID=MS.gene85979.t1.exon7;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70111617 | 70111729 | 70111617 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| chr8.2 | exon | 70111817 | 70111880 | 70111817 | ID=MS.gene85979.t1.exon8;Parent=MS.gene85979.t1 |
| chr8.2 | CDS | 70111817 | 70111880 | 70111817 | ID=cds.MS.gene85979.t1;Parent=MS.gene85979.t1 |
| Gene Sequence |
| Protein sequence |
