AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71825


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 134 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGTGTCTCTTCATTTC+TGG 0.080261 1.3:-75292714 MS.gene71825:intron
TGCATAGATGATTGCTTTAA+AGG 0.165421 1.3:-75292616 MS.gene71825:CDS
TGCAAATCAATTAAAGAAAA+TGG 0.219753 1.3:-75293541 MS.gene71825:CDS
ACCAGTATCTATGCTCCTTT+TGG 0.248004 1.3:-75291859 MS.gene71825:CDS
TTGTTGAAGCTTCCTGCTTC+TGG 0.303506 1.3:-75293352 MS.gene71825:CDS
TCAGGTGTCTCTTCATTTCT+GGG 0.315570 1.3:-75292713 MS.gene71825:intron
GAGTTACTCTGTTGGGTTCA+TGG 0.318367 1.3:-75291586 MS.gene71825:CDS
TAAAGTTATAACCACTTCTA+TGG 0.321812 1.3:-75293575 MS.gene71825:CDS
AAAATATTCTTCATTGTTGT+TGG 0.346316 1.3:-75293182 MS.gene71825:CDS
TCTCTTCATTTCTGGGGTAC+TGG 0.358919 1.3:-75292706 MS.gene71825:CDS
GAGCAATACTTGTCATTTCC+AGG 0.362820 1.3:+75290479 None:intergenic
AGTTCCATCCACGTTCTCTT+TGG 0.366087 1.3:+75290526 None:intergenic
TCATTAACTCTCTTGAGCTT+TGG 0.367280 1.3:-75292055 MS.gene71825:CDS
ACAAAACAATGGAGGACTTA+TGG 0.370348 1.3:-75293295 MS.gene71825:CDS
AGACAAAGCATAAAACAAAA+AGG 0.374855 1.3:-75290130 MS.gene71825:CDS
CTGTCCTAAAAGCCCTCATC+AGG 0.374975 1.3:+75293497 None:intergenic
GATGATGCCGCAGGATCATT+AGG 0.378915 1.3:+75291310 None:intergenic
CACTGTGGAGTTACTCTGTT+GGG 0.380617 1.3:-75291593 MS.gene71825:CDS
CAAGGTAGGACTTCACAATA+TGG 0.381844 1.3:+75293272 None:intergenic
AAAATTTCCAGTGTTCTTGT+TGG 0.383029 1.3:-75290620 MS.gene71825:intron
GTACCTTGATATATTTCCTT+AGG 0.386131 1.3:+75293143 None:intergenic
CGGCTAGGTACTTTCCCCTT+AGG 0.413546 1.3:-75291935 MS.gene71825:CDS
CATTTCTGGGGTACTGGTGG+AGG 0.417756 1.3:-75292700 MS.gene71825:CDS
CTTTGCCAATGCCTCCTGTA+GGG 0.419106 1.3:+75291805 None:intergenic
TCTTCGAAACCTTTCAACTT+TGG 0.426560 1.3:+75291515 None:intergenic
GTTTCACAGCATTTACGAAA+TGG 0.429053 1.3:+75292566 None:intergenic
GCAGAAGGGCTGTCGCTTGA+AGG 0.432094 1.3:+75290203 None:intergenic
AACTGCGTCATTGAACTTCT+CGG 0.432785 1.3:-75292520 MS.gene71825:CDS
GTTGACTGTACTTAATGAAA+TGG 0.436589 1.3:-75293392 MS.gene71825:CDS
GCAAATCAATTAAAGAAAAT+GGG 0.446925 1.3:-75293540 MS.gene71825:CDS
CCCTTAGGTTGAGATGTATC+CGG 0.448152 1.3:-75291920 MS.gene71825:CDS
TAGATACTGGTACAAAAGAA+TGG 0.450220 1.3:+75291871 None:intergenic
TTTAGGACAGCATGCCACTA+TGG 0.450538 1.3:-75293484 MS.gene71825:CDS
TCACTGAACTTAAGCAGATC+CGG 0.454118 1.3:+75294729 None:intergenic
TGATTTACGCAGCATATTGA+AGG 0.459394 1.3:-75291778 MS.gene71825:intron
TTGTGCATCTGTATTGGATC+TGG 0.460491 1.3:-75292640 MS.gene71825:CDS
TTTAGCTCATCCTGGTTACC+TGG 0.468220 1.3:-75290497 MS.gene71825:CDS
CAGCAATCTGGTTCAACATC+CGG 0.468912 1.3:+75291901 None:intergenic
CGCAGGATCATTAGGTAGAA+AGG 0.471731 1.3:+75291318 None:intergenic
TCAAGCGACAGCCCTTCTGC+CGG 0.472007 1.3:-75290200 MS.gene71825:CDS
AGGAATAAATCTCACACCTA+AGG 0.472641 1.3:-75290101 None:intergenic
AAGTTGCGCAACCTCACAAT+TGG 0.474304 1.3:+75291549 None:intergenic
TCCAAAAGGAGCATAGATAC+TGG 0.475479 1.3:+75291858 None:intergenic
CCACTTCTATGGTTGATTTG+TGG 0.479032 1.3:-75293564 MS.gene71825:CDS
CTTGTCATTTCCAGGTAACC+AGG 0.479894 1.3:+75290487 None:intergenic
CTTCATTTCTGGGGTACTGG+TGG 0.480769 1.3:-75292703 MS.gene71825:CDS
TGCGGTTCGTTCCCTGATGA+GGG 0.483874 1.3:-75293509 MS.gene71825:CDS
ATGAATAGACACGAAACAAC+AGG 0.485209 1.3:+75292670 None:intergenic
AATGGGTAGAAGCAGCAATC+TGG 0.490303 1.3:+75291889 None:intergenic
TGATGATGTTGTGGAGGACT+TGG 0.492880 1.3:-75290255 MS.gene71825:CDS
TGGAAGAAAAGAGATCATAA+TGG 0.493687 1.3:-75293329 MS.gene71825:CDS
ATGCGGTTCGTTCCCTGATG+AGG 0.495163 1.3:-75293510 MS.gene71825:CDS
AAGTGCATCCCTTAAAATCA+TGG 0.500234 1.3:+75292444 None:intergenic
AGAGAGTTGTGCATCTGTAT+TGG 0.501253 1.3:-75292646 MS.gene71825:CDS
CAAGCGACAGCCCTTCTGCC+GGG 0.504148 1.3:-75290199 MS.gene71825:CDS
GCTCCTAAGGAAATATATCA+AGG 0.505109 1.3:-75293146 MS.gene71825:intron
TCCGGATACATCTCAACCTA+AGG 0.506348 1.3:+75291919 None:intergenic
CTGCTGCATTTAGCTCATCC+TGG 0.510196 1.3:-75290505 MS.gene71825:CDS
GCAAATTGACCAAAGTTGAA+AGG 0.512230 1.3:-75291524 MS.gene71825:CDS
ACGACTCATTAAAGGAATCC+AGG 0.512258 1.3:-75290731 MS.gene71825:intron
TTGAAGCTTCCTGCTTCTGG+TGG 0.513192 1.3:-75293349 MS.gene71825:CDS
CAACAGCCTACTGAACCAAA+AGG 0.514963 1.3:-75290317 MS.gene71825:CDS
AGATACTGGTACAAAAGAAT+GGG 0.517124 1.3:+75291872 None:intergenic
CTCCACAACATCATCATCAA+TGG 0.522343 1.3:+75290262 None:intergenic
TTCTGTGGTTGAAGAACTTG+CGG 0.526193 1.3:-75291625 MS.gene71825:CDS
GTGGATGATGACATGGAAGA+TGG 0.527004 1.3:-75293664 MS.gene71825:CDS
CAGAGTAACTCCACAGTGCT+AGG 0.529878 1.3:+75291598 None:intergenic
AATGCCCGTGTCTTAAGAGT+TGG 0.530371 1.3:+75291666 None:intergenic
GAAATGGCAATTCAAAACAT+AGG 0.534559 1.3:+75292582 None:intergenic
TTTGCCAATGCCTCCTGTAG+GGG 0.535188 1.3:+75291806 None:intergenic
CAGTCATTTGATTCAAAATG+TGG 0.535572 1.3:+75293239 None:intergenic
GGAGGATACTAAAGAGAATG+AGG 0.540305 1.3:-75290552 MS.gene71825:CDS
CAGGTGTCTCTTCATTTCTG+GGG 0.543367 1.3:-75292712 MS.gene71825:CDS
GCTTTGCCAATGCCTCCTGT+AGG 0.545538 1.3:+75291804 None:intergenic
GCACTGTGGAGTTACTCTGT+TGG 0.548474 1.3:-75291594 MS.gene71825:CDS
GATTGAAGCAAAGCAACATA+AGG 0.549356 1.3:-75295428 MS.gene71825:CDS
ATATATTTCCTTAGGAGCGA+AGG 0.556004 1.3:+75293151 None:intergenic
TCTCATCATCATCACCATAG+TGG 0.557196 1.3:+75293470 None:intergenic
CACTGAACTTAAGCAGATCC+GGG 0.560310 1.3:+75294730 None:intergenic
TGATATCATTTACTTTACAT+CGG 0.560340 1.3:-75293207 MS.gene71825:CDS
TCATCTCCAGCATATCCAAA+AGG 0.562573 1.3:+75291844 None:intergenic
CCGGATACATCTCAACCTAA+GGG 0.564014 1.3:+75291920 None:intergenic
TTGCCAATGCCTCCTGTAGG+GGG 0.564018 1.3:+75291807 None:intergenic
CCTAGCCGTGGGAACTAGAC+GGG 0.565672 1.3:+75291950 None:intergenic
ATATTAGAGATTAATGTGGA+TGG 0.567480 1.3:-75295496 None:intergenic
CTACTGAACCAAAAGGAAAG+AGG 0.572500 1.3:-75290310 MS.gene71825:CDS
TGCCATTGATGATGATGTTG+TGG 0.573586 1.3:-75290264 MS.gene71825:CDS
GGAATAAATCTCACACCTAA+GGG 0.576466 1.3:-75290100 None:intergenic
GATGCCAAAGAGAACGTGGA+TGG 0.579919 1.3:-75290530 MS.gene71825:CDS
AAAGGTTTCGAAGAGAAATG+AGG 0.583015 1.3:-75291506 MS.gene71825:CDS
ACTGTACTTAATGAAATGGA+TGG 0.588834 1.3:-75293388 MS.gene71825:CDS
TAAGACACGGGCATTTCAAG+AGG 0.589841 1.3:-75291658 MS.gene71825:CDS
CTTTGCTTCAATCACAACCG+TGG 0.591835 1.3:+75295438 None:intergenic
AAATGTGGAGAGCATTTCCA+AGG 0.591878 1.3:+75293254 None:intergenic
CATGGAAGATGGAGAACCAC+AGG 0.594124 1.3:-75293653 MS.gene71825:CDS
GATTATATTAGAGATTAATG+TGG 0.595537 1.3:-75295500 None:intergenic
CATATTGTGAAGTCCTACCT+TGG 0.595814 1.3:-75293271 MS.gene71825:CDS
TCAAGAAAAGATGATGCCGC+AGG 0.596185 1.3:+75291301 None:intergenic
CCACAAATCAACCATAGAAG+TGG 0.600691 1.3:+75293564 None:intergenic
TGAGAAGGCTATTGAGCATG+AGG 0.603012 1.3:-75293626 MS.gene71825:CDS
CTTTCTACCTAATGATCCTG+CGG 0.603597 1.3:-75291317 MS.gene71825:CDS
GTGGAGAGCATTTCCAAGGT+AGG 0.605480 1.3:+75293258 None:intergenic
TGAGCATGAGGTTCAAGCAA+AGG 0.611999 1.3:-75293614 MS.gene71825:CDS
AGAACCACAGGTAGATGAGA+AGG 0.612954 1.3:-75293641 MS.gene71825:CDS
ATACTTTGATAGTGCACTAG+AGG 0.618108 1.3:+75290788 None:intergenic
ACCTAGCCGTGGGAACTAGA+CGG 0.618655 1.3:+75291949 None:intergenic
ATAGCCTTCTCATCTACCTG+TGG 0.620098 1.3:+75293637 None:intergenic
AGAATCAGCAAGTGATGAGG+AGG 0.621827 1.3:-75290570 MS.gene71825:CDS
GCAAGCCAACTCTTAAGACA+CGG 0.624117 1.3:-75291671 MS.gene71825:CDS
CAACTGTCGAATGAAAATGA+AGG 0.625145 1.3:+75292468 None:intergenic
TGAAGAATCAGCAAGTGATG+AGG 0.631498 1.3:-75290573 MS.gene71825:CDS
CGTCATTGAACTTCTCGGAG+TGG 0.634980 1.3:-75292515 MS.gene71825:CDS
CCCGTCTAGTTCCCACGGCT+AGG 0.635585 1.3:-75291950 MS.gene71825:CDS
ATTTGATGACTACAAAACAA+TGG 0.635609 1.3:-75293306 MS.gene71825:CDS
AAGGGGAAAGTACCTAGCCG+TGG 0.636588 1.3:+75291938 None:intergenic
AAGGCGTGTTGATATGCAGT+CGG 0.638450 1.3:+75292487 None:intergenic
GGAAGATGTGGATGATGACA+TGG 0.639734 1.3:-75293671 MS.gene71825:CDS
CAGATTGTGAACTATAAGCA+CGG 0.640362 1.3:+75292021 None:intergenic
TGAGGATGCCAAAGAGAACG+TGG 0.646565 1.3:-75290534 MS.gene71825:CDS
AGGGGAAAGTACCTAGCCGT+GGG 0.649443 1.3:+75291939 None:intergenic
AGAAAATGGGAGCTTAAATG+CGG 0.652168 1.3:-75293527 MS.gene71825:CDS
CAAGCCAACTCTTAAGACAC+GGG 0.654132 1.3:-75291670 MS.gene71825:CDS
AGTAGCCCGTCTAGTTCCCA+CGG 0.654607 1.3:-75291955 MS.gene71825:CDS
AATAGAAAATCTTCAGCACA+AGG 0.655625 1.3:-75295401 MS.gene71825:intron
TAGACACGAAACAACAGGAA+GGG 0.657156 1.3:+75292675 None:intergenic
CGGATACATCTCAACCTAAG+GGG 0.658910 1.3:+75291921 None:intergenic
CATTGATGATGATGTTGTGG+AGG 0.661802 1.3:-75290261 MS.gene71825:CDS
AATGAGGCAGCTTATTCGCG+AGG 0.672768 1.3:-75291490 MS.gene71825:intron
AGATGAATGATGATCAACAT+CGG 0.678740 1.3:+75290169 None:intergenic
TGTCCTAAAAGCCCTCATCA+GGG 0.678828 1.3:+75293498 None:intergenic
GTACTTGAAAGAGAATGACC+CGG 0.684135 1.3:-75294748 MS.gene71825:CDS
TGATGACTACAAAACAATGG+AGG 0.690281 1.3:-75293303 MS.gene71825:CDS
ATAGACACGAAACAACAGGA+AGG 0.702686 1.3:+75292674 None:intergenic
TTGCGGAACACCTAGCACTG+TGG 0.724336 1.3:-75291608 MS.gene71825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACCTTTTATATATTTAT+TGG - chr1.3:75290759-75290778 MS.gene71825:CDS 10.0%
!!! TTACCTTTTATATATTTATT+GGG - chr1.3:75290760-75290779 MS.gene71825:CDS 10.0%
!!! TTTTTGACAATTTTATTTTA+TGG - chr1.3:75293444-75293463 MS.gene71825:CDS 10.0%
!! AAAAAAGGAAAAAGAAATAT+TGG + chr1.3:75291179-75291198 None:intergenic 15.0%
!! AAAAAGGAAAAAGAAATATT+GGG + chr1.3:75291178-75291197 None:intergenic 15.0%
!! AAAATTAAATTTGTAGTGAT+TGG + chr1.3:75291444-75291463 None:intergenic 15.0%
!! AAACTTATATTTAGCTATTA+AGG + chr1.3:75290543-75290562 None:intergenic 15.0%
!! AAATTAAGAATAGTATCATT+CGG - chr1.3:75292701-75292720 MS.gene71825:CDS 15.0%
!! CACTTGATATAATAAAATAA+AGG + chr1.3:75294662-75294681 None:intergenic 15.0%
!! TAAAATAAAGGAAAAGAAAA+TGG + chr1.3:75294650-75294669 None:intergenic 15.0%
!! TACAATTCTCAAATATAAAT+GGG + chr1.3:75294745-75294764 None:intergenic 15.0%
!! TGATAAAAGTAAAACATAAA+AGG + chr1.3:75294151-75294170 None:intergenic 15.0%
!! TTACAATTCTCAAATATAAA+TGG + chr1.3:75294746-75294765 None:intergenic 15.0%
!!! AAATTTTCTATCTTGATTAA+AGG + chr1.3:75291631-75291650 None:intergenic 15.0%
!!! TTAATCAAGATAGAAAATTT+TGG - chr1.3:75291631-75291650 MS.gene71825:CDS 15.0%
!!! TTATGTTTTACTTTTATCAT+TGG - chr1.3:75294152-75294171 MS.gene71825:intron 15.0%
!! AAAATATTCTTCATTGTTGT+TGG - chr1.3:75292410-75292429 MS.gene71825:intron 20.0%
!! AACAATGTAATGTAATGTAA+TGG + chr1.3:75290223-75290242 None:intergenic 20.0%
!! ACAATGTAATGTAATGTAAT+GGG + chr1.3:75290222-75290241 None:intergenic 20.0%
!! ATAAAACAAAAAGGTTGAAA+AGG - chr1.3:75295471-75295490 MS.gene71825:CDS 20.0%
!! GCAAATCAATTAAAGAAAAT+GGG - chr1.3:75292052-75292071 MS.gene71825:CDS 20.0%
!! TACATTAATTGAGATGAATA+TGG - chr1.3:75290951-75290970 MS.gene71825:intron 20.0%
!! TAGCCCAATAAATATATAAA+AGG + chr1.3:75290766-75290785 None:intergenic 20.0%
!! TATAGAAGTTTATTTGCTTA+AGG + chr1.3:75294482-75294501 None:intergenic 20.0%
!! TATATAACATAACAGCAAAA+AGG + chr1.3:75291720-75291739 None:intergenic 20.0%
!! TGATATCATTTACTTTACAT+CGG - chr1.3:75292385-75292404 MS.gene71825:intron 20.0%
!! TGATTAAAAAGCTTAATAGA+TGG - chr1.3:75292611-75292630 MS.gene71825:CDS 20.0%
!! TGCAAATCAATTAAAGAAAA+TGG - chr1.3:75292051-75292070 MS.gene71825:CDS 20.0%
!! TTAACATATGTCTATTCATT+TGG - chr1.3:75292832-75292851 MS.gene71825:intron 20.0%
!! TTAAGCAAATAAACTTCTAT+AGG - chr1.3:75294481-75294500 MS.gene71825:intron 20.0%
!!! AACTAAATTTTTCTGAAATC+TGG - chr1.3:75292643-75292662 MS.gene71825:CDS 20.0%
!!! ACTTTTGTTTGTTTTGTATT+AGG - chr1.3:75291114-75291133 MS.gene71825:intron 20.0%
!!! GCTATTAAGTTATTTCATTT+TGG - chr1.3:75294545-75294564 MS.gene71825:intron 20.0%
!!! TTCTTTTTACTTTTTATCTG+AGG - chr1.3:75295229-75295248 MS.gene71825:intron 20.0%
!!! TTGTATTTTTTTAGACCTAT+AGG - chr1.3:75291477-75291496 MS.gene71825:intron 20.0%
!!! TTTTTGCTGTTATGTTATAT+AGG - chr1.3:75291719-75291738 MS.gene71825:intron 20.0%
! AAACAAGACAGATATTAGAT+AGG + chr1.3:75290923-75290942 None:intergenic 25.0%
! ACAAAAAAACGACTCATTAA+AGG - chr1.3:75294853-75294872 MS.gene71825:intron 25.0%
! ACTTTCTTGTTGAAATTATC+AGG - chr1.3:75292861-75292880 MS.gene71825:intron 25.0%
! AGACAAAGCATAAAACAAAA+AGG - chr1.3:75295462-75295481 MS.gene71825:CDS 25.0%
! ATCTCATTAGTAATGAGTAA+AGG - chr1.3:75293336-75293355 MS.gene71825:CDS 25.0%
! ATTAAATTTGTAGTGATTGG+TGG + chr1.3:75291441-75291460 None:intergenic 25.0%
! ATTTAGTAATGCATGCAAAT+AGG + chr1.3:75291836-75291855 None:intergenic 25.0%
! CGAATAAAACAAATCTATCA+AGG + chr1.3:75293379-75293398 None:intergenic 25.0%
! CTAAAAGATTTATAGCCTAT+AGG + chr1.3:75291495-75291514 None:intergenic 25.0%
! TAAAGTTATAACCACTTCTA+TGG - chr1.3:75292017-75292036 MS.gene71825:CDS 25.0%
! TACCAATAATGAACACAAAA+TGG + chr1.3:75291416-75291435 None:intergenic 25.0%
! TACTCATTACTAATGAGATA+CGG + chr1.3:75293335-75293354 None:intergenic 25.0%
! TATGCAAGAATACCTTTAAA+AGG + chr1.3:75293893-75293912 None:intergenic 25.0%
! TGCACTTAATACAAAAACTA+AGG - chr1.3:75293164-75293183 MS.gene71825:CDS 25.0%
! TTAAATTTGTAGTGATTGGT+GGG + chr1.3:75291440-75291459 None:intergenic 25.0%
!! AAGAATACCTTTAAAAGGTT+AGG + chr1.3:75293888-75293907 None:intergenic 25.0%
!! AAGGAAAAAAGTTTTTATGC+AGG + chr1.3:75294463-75294482 None:intergenic 25.0%
!! ATTTGATGACTACAAAACAA+TGG - chr1.3:75292286-75292305 MS.gene71825:intron 25.0%
!! CTATAGGCTATAAATCTTTT+AGG - chr1.3:75291493-75291512 MS.gene71825:CDS 25.0%
!! GTGAATTTAAAATTCAAACC+TGG + chr1.3:75294882-75294901 None:intergenic 25.0%
!! TTCCATTTTGTGTTCATTAT+TGG - chr1.3:75291411-75291430 MS.gene71825:intron 25.0%
!! TTCTTAATTTTGTTCGAGTA+CGG + chr1.3:75292691-75292710 None:intergenic 25.0%
!! TTTAAAGTAAAGTGACATTG+AGG + chr1.3:75294715-75294734 None:intergenic 25.0%
!!! AATCTTTTAGGTTAAGGTTA+TGG - chr1.3:75291505-75291524 MS.gene71825:CDS 25.0%
!!! AGAATTTTTTTCCCATATCT+AGG + chr1.3:75291051-75291070 None:intergenic 25.0%
!!! AGATTTTCTCTTTACTTTTG+AGG - chr1.3:75294323-75294342 MS.gene71825:intron 25.0%
!!! CATTAGTACTTTAAAGTTTG+TGG - chr1.3:75292524-75292543 MS.gene71825:CDS 25.0%
!!! CTTTTTCGGATGAAAAAAAA+AGG + chr1.3:75291194-75291213 None:intergenic 25.0%
!!! CTTTTTTTTTCATCCGAAAA+AGG - chr1.3:75291192-75291211 MS.gene71825:intron 25.0%
!!! GCTATAAATCTTTTAGGTTA+AGG - chr1.3:75291499-75291518 MS.gene71825:CDS 25.0%
!!! TAAAGGTATTCTTGCATATT+AGG - chr1.3:75293895-75293914 MS.gene71825:intron 25.0%
!!! TTAAATGTCTGAGCTATTTT+CGG - chr1.3:75290350-75290369 MS.gene71825:intron 25.0%
!!! TTCATTTTGGTCTATATATC+TGG - chr1.3:75294558-75294577 MS.gene71825:intron 25.0%
!!! TTGTTTTATTCGTGTTTGAT+TGG - chr1.3:75293387-75293406 MS.gene71825:CDS 25.0%
AAAATTTCCAGTGTTCTTGT+TGG - chr1.3:75294972-75294991 MS.gene71825:intron 30.0%
AAAGAGCAAGAAAAATTCCA+CGG - chr1.3:75290137-75290156 MS.gene71825:CDS 30.0%
AAATACACATCTCACATCAA+TGG + chr1.3:75290994-75291013 None:intergenic 30.0%
AATAGAAAATCTTCAGCACA+AGG - chr1.3:75290191-75290210 MS.gene71825:CDS 30.0%
AATCTCTTGTAAGCTATAGA+TGG - chr1.3:75291581-75291600 MS.gene71825:CDS 30.0%
ACTGTACTTAATGAAATGGA+TGG - chr1.3:75292204-75292223 MS.gene71825:intron 30.0%
AGAGATAAACATTGCTTGAA+AGG + chr1.3:75290569-75290588 None:intergenic 30.0%
AGATACTGGTACAAAAGAAT+GGG + chr1.3:75293723-75293742 None:intergenic 30.0%
AGATGAATGATGATCAACAT+CGG + chr1.3:75295426-75295445 None:intergenic 30.0%
CACAACGAAATGTAAATTCA+AGG - chr1.3:75291280-75291299 MS.gene71825:intron 30.0%
CAGTCATTTGATTCAAAATG+TGG + chr1.3:75292356-75292375 None:intergenic 30.0%
GAAATGGCAATTCAAAACAT+AGG + chr1.3:75293013-75293032 None:intergenic 30.0%
GATAGATCAATTGTTAGGAT+TGG + chr1.3:75293290-75293309 None:intergenic 30.0%
GGCTACTCCAAAAATTATTT+GGG + chr1.3:75293624-75293643 None:intergenic 30.0%
GTACCTTGATATATTTCCTT+AGG + chr1.3:75292452-75292471 None:intergenic 30.0%
GTATGTGTGAAATTTGAACT+AGG - chr1.3:75290720-75290739 MS.gene71825:intron 30.0%
GTGTCTTCTCAAAATCTAAT+AGG + chr1.3:75291535-75291554 None:intergenic 30.0%
GTTGACTGTACTTAATGAAA+TGG - chr1.3:75292200-75292219 MS.gene71825:intron 30.0%
TAGATACTGGTACAAAAGAA+TGG + chr1.3:75293724-75293743 None:intergenic 30.0%
TCAAGGTACAAATAGTTCAT+TGG - chr1.3:75292463-75292482 MS.gene71825:CDS 30.0%
TGCATAGATGATTGCTTTAA+AGG - chr1.3:75292976-75292995 MS.gene71825:intron 30.0%
TGGAAGAAAAGAGATCATAA+TGG - chr1.3:75292263-75292282 MS.gene71825:intron 30.0%
TTCAAGCAATGTTTATCTCT+AGG - chr1.3:75290569-75290588 MS.gene71825:CDS 30.0%
! AAATCCACCTAACCTTTTAA+AGG - chr1.3:75293878-75293897 MS.gene71825:intron 30.0%
! AATACCTTTAAAAGGTTAGG+TGG + chr1.3:75293885-75293904 None:intergenic 30.0%
! ACCAGAAGTATATACTTACA+AGG + chr1.3:75292756-75292775 None:intergenic 30.0%
! CCAGAAGTATATACTTACAA+GGG + chr1.3:75292755-75292774 None:intergenic 30.0%
! CTTTGCTTGTTCTTATTTGA+AGG - chr1.3:75290277-75290296 MS.gene71825:CDS 30.0%
! GTTTTGTATTAGGAAGATGT+GGG - chr1.3:75291124-75291143 MS.gene71825:intron 30.0%
! TGATAATGATGTATGCATGT+TGG + chr1.3:75294929-75294948 None:intergenic 30.0%
! TGTCTTTTATTCCAATTGTG+AGG - chr1.3:75294032-75294051 MS.gene71825:intron 30.0%
! TGTTTTGTATTAGGAAGATG+TGG - chr1.3:75291123-75291142 MS.gene71825:intron 30.0%
! TTCGTCTGAATGTTTTCTTT+AGG - chr1.3:75293484-75293503 MS.gene71825:CDS 30.0%
! TTCTGGTAATGTGAATGAAA+AGG - chr1.3:75292769-75292788 MS.gene71825:intron 30.0%
! TTTTGTAGTGAACAATGATG+AGG + chr1.3:75292492-75292511 None:intergenic 30.0%
!! ACAGTCAACTTGATTTTGAT+AGG - chr1.3:75294766-75294785 MS.gene71825:CDS 30.0%
!! AGTATTGATTGTTTCCTTGT+TGG - chr1.3:75294356-75294375 MS.gene71825:intron 30.0%
!! TAGATTTTGAGAAGACACTT+GGG - chr1.3:75291537-75291556 MS.gene71825:CDS 30.0%
!! TTAGATTTTGAGAAGACACT+TGG - chr1.3:75291536-75291555 MS.gene71825:CDS 30.0%
!! TTGTTTTATGCTTTGTCTTG+CGG + chr1.3:75295460-75295479 None:intergenic 30.0%
!!! TTTTTTTCCCATATCTAGGA+TGG + chr1.3:75291047-75291066 None:intergenic 30.0%
AAAGGTTTCGAAGAGAAATG+AGG - chr1.3:75294086-75294105 MS.gene71825:intron 35.0%
AAATGCTAACATGTGCTCTA+AGG - chr1.3:75291304-75291323 MS.gene71825:CDS 35.0%
AAGTGCATCCCTTAAAATCA+TGG + chr1.3:75293151-75293170 None:intergenic 35.0%
AATGCTAACATGTGCTCTAA+GGG - chr1.3:75291305-75291324 MS.gene71825:CDS 35.0%
ACAAAACAATGGAGGACTTA+TGG - chr1.3:75292297-75292316 MS.gene71825:intron 35.0%
ACAAGTAAAGGTTTCAGTGA+AGG - chr1.3:75290664-75290683 MS.gene71825:intron 35.0%
AGAAAATGGGAGCTTAAATG+CGG - chr1.3:75292065-75292084 MS.gene71825:CDS 35.0%
AGACATATTGCATGTCCATA+GGG - chr1.3:75290626-75290645 MS.gene71825:intron 35.0%
AGCTTGGAAGAATTGAAACA+TGG + chr1.3:75294432-75294451 None:intergenic 35.0%
ATATATTTCCTTAGGAGCGA+AGG + chr1.3:75292444-75292463 None:intergenic 35.0%
ATGAATAGACACGAAACAAC+AGG + chr1.3:75292925-75292944 None:intergenic 35.0%
ATTGTTTCCTTGTTGGATGT+TGG - chr1.3:75294363-75294382 MS.gene71825:intron 35.0%
CAAATCTATCAAGGAATGTC+TGG + chr1.3:75293370-75293389 None:intergenic 35.0%
CAACTGTCGAATGAAAATGA+AGG + chr1.3:75293127-75293146 None:intergenic 35.0%
CAGATTGTGAACTATAAGCA+CGG + chr1.3:75293574-75293593 None:intergenic 35.0%
CCAAAAATTATTTGGGTCAG+TGG + chr1.3:75293617-75293636 None:intergenic 35.0%
CCCTTGTAAGTATATACTTC+TGG - chr1.3:75292752-75292771 MS.gene71825:intron 35.0%
GATTGAAGCAAAGCAACATA+AGG - chr1.3:75290164-75290183 MS.gene71825:CDS 35.0%
GCAAATTGACCAAAGTTGAA+AGG - chr1.3:75294068-75294087 MS.gene71825:intron 35.0%
GCTCCTAAGGAAATATATCA+AGG - chr1.3:75292446-75292465 MS.gene71825:CDS 35.0%
GGGCTACTCCAAAAATTATT+TGG + chr1.3:75293625-75293644 None:intergenic 35.0%
GTCAGGATAGATCAATTGTT+AGG + chr1.3:75293295-75293314 None:intergenic 35.0%
GTTTCACAGCATTTACGAAA+TGG + chr1.3:75293029-75293048 None:intergenic 35.0%
TAAAAATCTTCGTCCTGCAA+TGG + chr1.3:75290821-75290840 None:intergenic 35.0%
TAAATTCACCTCCATTCTCA+TGG - chr1.3:75294893-75294912 MS.gene71825:intron 35.0%
TAGACATATTGCATGTCCAT+AGG - chr1.3:75290625-75290644 MS.gene71825:intron 35.0%
TCATTAACTCTCTTGAGCTT+TGG - chr1.3:75293537-75293556 MS.gene71825:CDS 35.0%
TCTAATGCCATCCTAGATAT+GGG - chr1.3:75291037-75291056 MS.gene71825:intron 35.0%
TCTTCGAAACCTTTCAACTT+TGG + chr1.3:75294080-75294099 None:intergenic 35.0%
TGAATATGTCTTCCAATGCT+TGG - chr1.3:75292555-75292574 MS.gene71825:CDS 35.0%
TGATGACTACAAAACAATGG+AGG - chr1.3:75292289-75292308 MS.gene71825:intron 35.0%
TGATTTACGCAGCATATTGA+AGG - chr1.3:75293814-75293833 MS.gene71825:intron 35.0%
TGTAGGAAATCTCAAGAGAT+TGG - chr1.3:75291784-75291803 MS.gene71825:CDS 35.0%
TGTGTGAAATTTGAACTAGG+TGG - chr1.3:75290723-75290742 MS.gene71825:intron 35.0%
TTCTAATGCCATCCTAGATA+TGG - chr1.3:75291036-75291055 MS.gene71825:intron 35.0%
TTCTTCATCACCAAAAACAG+AGG + chr1.3:75295006-75295025 None:intergenic 35.0%
TTTCAATTCTTCCAAGCTCT+CGG - chr1.3:75294434-75294453 MS.gene71825:intron 35.0%
! AATTTTCCACACTCAGATTG+AGG - chr1.3:75294212-75294231 MS.gene71825:intron 35.0%
! ACAGTTGGCCATGATTTTAA+GGG - chr1.3:75293140-75293159 MS.gene71825:intron 35.0%
! CCACTGACCCAAATAATTTT+TGG - chr1.3:75293614-75293633 MS.gene71825:CDS 35.0%
! CTTCATTTTCATTCGACAGT+TGG - chr1.3:75293125-75293144 MS.gene71825:intron 35.0%
! CTTTTCGCAAGGTTTATGAA+TGG - chr1.3:75293510-75293529 MS.gene71825:CDS 35.0%
! GTGCAGTGATCATAATTTGT+AGG - chr1.3:75291767-75291786 MS.gene71825:intron 35.0%
! TTAACAACCTTTTCCATTGC+AGG - chr1.3:75290805-75290824 MS.gene71825:CDS 35.0%
! TTCTTTTATCCAGGAAGATG+TGG - chr1.3:75291909-75291928 MS.gene71825:CDS 35.0%
! TTGTGTGTTTGCTGGTAAAT+TGG - chr1.3:75291661-75291680 MS.gene71825:CDS 35.0%
!! AAGAACATTTGTGACTTGCT+AGG - chr1.3:75292802-75292821 MS.gene71825:intron 35.0%
!! AGATTTTGAGAAGACACTTG+GGG - chr1.3:75291538-75291557 MS.gene71825:CDS 35.0%
!! ATACTTTGATAGTGCACTAG+AGG + chr1.3:75294807-75294826 None:intergenic 35.0%
!! TATTGAAGGTACTCGTTACT+TGG - chr1.3:75293828-75293847 MS.gene71825:intron 35.0%
!!! CGTTTTTTTGTTTTGCTCTC+TGG + chr1.3:75294844-75294863 None:intergenic 35.0%
!!! TGCTTTTTCCTCTTTCCTTT+TGG + chr1.3:75295293-75295312 None:intergenic 35.0%
!!! TTTGTCTTGCGGTTTTGTTT+TGG + chr1.3:75295449-75295468 None:intergenic 35.0%
!!! TTTTTTGTTTTGCTCTCTGG+CGG + chr1.3:75294841-75294860 None:intergenic 35.0%
AACTGCGTCATTGAACTTCT+CGG - chr1.3:75293072-75293091 MS.gene71825:intron 40.0%
AAGTGTCAAGCTCATAAGTC+AGG + chr1.3:75293312-75293331 None:intergenic 40.0%
AATTACTGCACAAGACCGAA+TGG + chr1.3:75292592-75292611 None:intergenic 40.0%
AATTGGTTGAAGAGGAATGC+CGG - chr1.3:75291678-75291697 MS.gene71825:CDS 40.0%
ACAAGCAAAGTTGCATACAC+AGG + chr1.3:75290267-75290286 None:intergenic 40.0%
ACAGTAATCCATGAGAATGG+AGG + chr1.3:75294904-75294923 None:intergenic 40.0%
ACATTGAGGCGTGAAATAAG+TGG + chr1.3:75294701-75294720 None:intergenic 40.0%
ACGACTCATTAAAGGAATCC+AGG - chr1.3:75294861-75294880 MS.gene71825:intron 40.0%
ACGTAGACGAAGACAAGTAA+AGG - chr1.3:75290652-75290671 MS.gene71825:intron 40.0%
AGAGAGTTGTGCATCTGTAT+TGG - chr1.3:75292946-75292965 MS.gene71825:intron 40.0%
AGGAGCAATCTTGACAATAC+CGG + chr1.3:75291700-75291719 None:intergenic 40.0%
AGTAAGCTGCTTATCCAAAC+AGG - chr1.3:75290516-75290535 MS.gene71825:CDS 40.0%
ATAGACACGAAACAACAGGA+AGG + chr1.3:75292921-75292940 None:intergenic 40.0%
ATCAGGTGTCTCTTCATTTC+TGG - chr1.3:75292878-75292897 MS.gene71825:intron 40.0%
CAAGGTAGGACTTCACAATA+TGG + chr1.3:75292323-75292342 None:intergenic 40.0%
CATATTGTGAAGTCCTACCT+TGG - chr1.3:75292321-75292340 MS.gene71825:intron 40.0%
CATTGAGGCGTGAAATAAGT+GGG + chr1.3:75294700-75294719 None:intergenic 40.0%
CATTGCAGTGGCTAAATGAT+GGG - chr1.3:75291216-75291235 MS.gene71825:intron 40.0%
CCACAAATCAACCATAGAAG+TGG + chr1.3:75292031-75292050 None:intergenic 40.0%
CTACTGAACCAAAAGGAAAG+AGG - chr1.3:75295282-75295301 MS.gene71825:intron 40.0%
CTCCACAACATCATCATCAA+TGG + chr1.3:75295333-75295352 None:intergenic 40.0%
CTTAGCTACTAAGCTTGCAT+TGG - chr1.3:75291069-75291088 MS.gene71825:intron 40.0%
CTTTCTACCTAATGATCCTG+CGG - chr1.3:75294275-75294294 MS.gene71825:intron 40.0%
GAAGAATTGAAACATGGAGC+AGG + chr1.3:75294426-75294445 None:intergenic 40.0%
GACACAGTAATCCATGAGAA+TGG + chr1.3:75294907-75294926 None:intergenic 40.0%
GCCACAAACATGTCTCTAAA+GGG + chr1.3:75291256-75291275 None:intergenic 40.0%
GCTAAACACTATCGTATGGT+GGG - chr1.3:75294580-75294599 MS.gene71825:intron 40.0%
GGAGGATACTAAAGAGAATG+AGG - chr1.3:75295040-75295059 MS.gene71825:intron 40.0%
GTAAGCTGCTTATCCAAACA+GGG - chr1.3:75290517-75290536 MS.gene71825:CDS 40.0%
GTACTTGAAAGAGAATGACC+CGG - chr1.3:75290844-75290863 MS.gene71825:intron 40.0%
GTGAAATTTGAACTAGGTGG+TGG - chr1.3:75290726-75290745 MS.gene71825:intron 40.0%
TAGACACGAAACAACAGGAA+GGG + chr1.3:75292920-75292939 None:intergenic 40.0%
TCACTGAACTTAAGCAGATC+CGG + chr1.3:75290866-75290885 None:intergenic 40.0%
TCAGGTGTCTCTTCATTTCT+GGG - chr1.3:75292879-75292898 MS.gene71825:intron 40.0%
TCATCTCCAGCATATCCAAA+AGG + chr1.3:75293751-75293770 None:intergenic 40.0%
TCATTGCAGTGGCTAAATGA+TGG - chr1.3:75291215-75291234 MS.gene71825:intron 40.0%
TCTAGCAGCAAAATGTTACG+AGG + chr1.3:75293244-75293263 None:intergenic 40.0%
TCTCATCATCATCACCATAG+TGG + chr1.3:75292125-75292144 None:intergenic 40.0%
TCTGGCTAAACACTATCGTA+TGG - chr1.3:75294576-75294595 MS.gene71825:intron 40.0%
TGAAGAATCAGCAAGTGATG+AGG - chr1.3:75295019-75295038 MS.gene71825:intron 40.0%
TGCCACAAACATGTCTCTAA+AGG + chr1.3:75291257-75291276 None:intergenic 40.0%
TGCTGGTAAATTGGTTGAAG+AGG - chr1.3:75291670-75291689 MS.gene71825:CDS 40.0%
TTAGCTATTAAGGCCCTGTT+TGG + chr1.3:75290533-75290552 None:intergenic 40.0%
TTCTGTGGTTGAAGAACTTG+CGG - chr1.3:75293967-75293986 MS.gene71825:intron 40.0%
TTCTTCTCCAACAAGAACAC+TGG + chr1.3:75294982-75295001 None:intergenic 40.0%
TTGTGCATCTGTATTGGATC+TGG - chr1.3:75292952-75292971 MS.gene71825:intron 40.0%
! ACCAGTATCTATGCTCCTTT+TGG - chr1.3:75293733-75293752 MS.gene71825:intron 40.0%
! ATCAACATCGGCATTTTTCC+CGG + chr1.3:75295414-75295433 None:intergenic 40.0%
! CGTAACATTTTGCTGCTAGA+GGG - chr1.3:75293244-75293263 MS.gene71825:CDS 40.0%
! CTGTTTCGCTTCTTTTATCC+AGG - chr1.3:75291900-75291919 MS.gene71825:CDS 40.0%
! GACAGTTGGCCATGATTTTA+AGG - chr1.3:75293139-75293158 MS.gene71825:intron 40.0%
! GAGCAATACTTGTCATTTCC+AGG + chr1.3:75295116-75295135 None:intergenic 40.0%
! GGAGAAGAATCCTCTGTTTT+TGG - chr1.3:75294993-75295012 MS.gene71825:intron 40.0%
! TATGCTCCTTTTGGATATGC+TGG - chr1.3:75293742-75293761 MS.gene71825:intron 40.0%
! TCCAAAAGGAGCATAGATAC+TGG + chr1.3:75293737-75293756 None:intergenic 40.0%
! TCCCTTTAGAGACATGTTTG+TGG - chr1.3:75291252-75291271 MS.gene71825:intron 40.0%
! TCGTAACATTTTGCTGCTAG+AGG - chr1.3:75293243-75293262 MS.gene71825:CDS 40.0%
! TGCGCTTTTCATTCACAAAC+TGG + chr1.3:75294245-75294264 None:intergenic 40.0%
! TTGGCATGCATCAGATTTTG+TGG - chr1.3:75294171-75294190 MS.gene71825:intron 40.0%
!! AAATGTGGAGAGCATTTCCA+AGG + chr1.3:75292341-75292360 None:intergenic 40.0%
!! CAATTGTTAGGATTGGTTCC+AGG + chr1.3:75293283-75293302 None:intergenic 40.0%
!! CATTGATGATGATGTTGTGG+AGG - chr1.3:75295331-75295350 MS.gene71825:intron 40.0%
!! CCACTTCTATGGTTGATTTG+TGG - chr1.3:75292028-75292047 MS.gene71825:CDS 40.0%
!! TCTTTAGGAAGCTTTTCGCA+AGG - chr1.3:75293499-75293518 MS.gene71825:CDS 40.0%
!! TGCCATTGATGATGATGTTG+TGG - chr1.3:75295328-75295347 MS.gene71825:intron 40.0%
!!! AGAGGCTTGTGTTTTTTCTG+TGG - chr1.3:75293952-75293971 MS.gene71825:intron 40.0%
!!! CTCTTTCCTTTTGGTTCAGT+AGG + chr1.3:75295284-75295303 None:intergenic 40.0%
AAGTTGCGCAACCTCACAAT+TGG + chr1.3:75294046-75294065 None:intergenic 45.0%
AATGCCCGTGTCTTAAGAGT+TGG + chr1.3:75293929-75293948 None:intergenic 45.0%
AATGGGTAGAAGCAGCAATC+TGG + chr1.3:75293706-75293725 None:intergenic 45.0%
AGAACCACAGGTAGATGAGA+AGG - chr1.3:75291951-75291970 MS.gene71825:CDS 45.0%
AGAATCAGCAAGTGATGAGG+AGG - chr1.3:75295022-75295041 MS.gene71825:intron 45.0%
AGCATCGTCAGTCACTTCAT+TGG + chr1.3:75294528-75294547 None:intergenic 45.0%
AGGTCAACCAACATCCAACA+AGG + chr1.3:75294373-75294392 None:intergenic 45.0%
AGTTCCATCCACGTTCTCTT+TGG + chr1.3:75295069-75295088 None:intergenic 45.0%
ATAGCCTTCTCATCTACCTG+TGG + chr1.3:75291958-75291977 None:intergenic 45.0%
CAACAGCCTACTGAACCAAA+AGG - chr1.3:75295275-75295294 MS.gene71825:intron 45.0%
CAAGCCAACTCTTAAGACAC+GGG - chr1.3:75293922-75293941 MS.gene71825:intron 45.0%
CACTGAACTTAAGCAGATCC+GGG + chr1.3:75290865-75290884 None:intergenic 45.0%
CACTGTGGAGTTACTCTGTT+GGG - chr1.3:75293999-75294018 MS.gene71825:intron 45.0%
CAGGTGTCTCTTCATTTCTG+GGG - chr1.3:75292880-75292899 MS.gene71825:intron 45.0%
CCGGATACATCTCAACCTAA+GGG + chr1.3:75293675-75293694 None:intergenic 45.0%
CGCAGGATCATTAGGTAGAA+AGG + chr1.3:75294277-75294296 None:intergenic 45.0%
CGGATACATCTCAACCTAAG+GGG + chr1.3:75293674-75293693 None:intergenic 45.0%
CTGAGGAATGCTTTGCTTTC+AGG - chr1.3:75295246-75295265 MS.gene71825:intron 45.0%
CTTTGCTTCAATCACAACCG+TGG + chr1.3:75290157-75290176 None:intergenic 45.0%
GAGGGATACAATCAATCACC+TGG - chr1.3:75293262-75293281 MS.gene71825:CDS 45.0%
GAGTTACTCTGTTGGGTTCA+TGG - chr1.3:75294006-75294025 MS.gene71825:intron 45.0%
GCAAGCCAACTCTTAAGACA+CGG - chr1.3:75293921-75293940 MS.gene71825:intron 45.0%
GGAAGATGTGGATGATGACA+TGG - chr1.3:75291921-75291940 MS.gene71825:CDS 45.0%
GGCTAAACACTATCGTATGG+TGG - chr1.3:75294579-75294598 MS.gene71825:intron 45.0%
GTGGATGATGACATGGAAGA+TGG - chr1.3:75291928-75291947 MS.gene71825:CDS 45.0%
GTGTGTTTGTGTATGCAGCT+GGG + chr1.3:75295168-75295187 None:intergenic 45.0%
TAAGACACGGGCATTTCAAG+AGG - chr1.3:75293934-75293953 MS.gene71825:intron 45.0%
TCAAGAAAAGATGATGCCGC+AGG + chr1.3:75294294-75294313 None:intergenic 45.0%
TCCGAAAAAGGTCATTGCAG+TGG - chr1.3:75291204-75291223 MS.gene71825:intron 45.0%
TCCGGATACATCTCAACCTA+AGG + chr1.3:75293676-75293695 None:intergenic 45.0%
TCTTCGTCCTGCAATGGAAA+AGG + chr1.3:75290815-75290834 None:intergenic 45.0%
TGAGAAGGCTATTGAGCATG+AGG - chr1.3:75291966-75291985 MS.gene71825:CDS 45.0%
TGAGCATGAGGTTCAAGCAA+AGG - chr1.3:75291978-75291997 MS.gene71825:CDS 45.0%
TGTCATCATCCACATCTTCC+TGG + chr1.3:75291921-75291940 None:intergenic 45.0%
TGTCCTAAAAGCCCTCATCA+GGG + chr1.3:75292097-75292116 None:intergenic 45.0%
TTGTTGAAGCTTCCTGCTTC+TGG - chr1.3:75292240-75292259 MS.gene71825:intron 45.0%
! AAGGCGTGTTGATATGCAGT+CGG + chr1.3:75293108-75293127 None:intergenic 45.0%
! CAGCAATCTGGTTCAACATC+CGG + chr1.3:75293694-75293713 None:intergenic 45.0%
! CATTAGCCTCAATCTGAGTG+TGG + chr1.3:75294221-75294240 None:intergenic 45.0%
! CTTCCAATGCTTGGTGATTG+TGG - chr1.3:75292564-75292583 MS.gene71825:CDS 45.0%
! CTTGTCATTTCCAGGTAACC+AGG + chr1.3:75295108-75295127 None:intergenic 45.0%
! GAACTAGGTGGTGGTTGATA+GGG - chr1.3:75290735-75290754 MS.gene71825:CDS 45.0%
! GCCACTGCAATGACCTTTTT+CGG + chr1.3:75291208-75291227 None:intergenic 45.0%
! TCTTTTCTTCCACCAGAAGC+AGG + chr1.3:75292255-75292274 None:intergenic 45.0%
! TGAACTAGGTGGTGGTTGAT+AGG - chr1.3:75290734-75290753 MS.gene71825:CDS 45.0%
! TGATGATGTTGTGGAGGACT+TGG - chr1.3:75295337-75295356 MS.gene71825:intron 45.0%
! TGCGGCATCATCTTTTCTTG+AGG - chr1.3:75294293-75294312 MS.gene71825:intron 45.0%
! TTGGTGATTGTGGCACCATT+CGG - chr1.3:75292574-75292593 MS.gene71825:CDS 45.0%
! TTTAGCTCATCCTGGTTACC+TGG - chr1.3:75295095-75295114 MS.gene71825:intron 45.0%
! TTTAGGACAGCATGCCACTA+TGG - chr1.3:75292108-75292127 MS.gene71825:intron 45.0%
!! CCCTTAGGTTGAGATGTATC+CGG - chr1.3:75293672-75293691 MS.gene71825:CDS 45.0%
!! TCTCTTCATTTCTGGGGTAC+TGG - chr1.3:75292886-75292905 MS.gene71825:intron 45.0%
AATGAGGCAGCTTATTCGCG+AGG - chr1.3:75294102-75294121 MS.gene71825:intron 50.0%
CAGAGTAACTCCACAGTGCT+AGG + chr1.3:75293997-75294016 None:intergenic 50.0%
CATGGAAGATGGAGAACCAC+AGG - chr1.3:75291939-75291958 MS.gene71825:CDS 50.0%
CGTCATTGAACTTCTCGGAG+TGG - chr1.3:75293077-75293096 MS.gene71825:intron 50.0%
CGTGTGTTTGTGTATGCAGC+TGG + chr1.3:75295169-75295188 None:intergenic 50.0%
CTGTCCTAAAAGCCCTCATC+AGG + chr1.3:75292098-75292117 None:intergenic 50.0%
CTTCGTCTACGTCTACCCTA+TGG + chr1.3:75290644-75290663 None:intergenic 50.0%
CTTTGCCAATGCCTCCTGTA+GGG + chr1.3:75293790-75293809 None:intergenic 50.0%
GACTGTGCTTGTGTGTTTGC+TGG - chr1.3:75291653-75291672 MS.gene71825:CDS 50.0%
GAGTTGAATAGACCCCCTAC+AGG - chr1.3:75293773-75293792 MS.gene71825:intron 50.0%
GATGATGCCGCAGGATCATT+AGG + chr1.3:75294285-75294304 None:intergenic 50.0%
GATGCCAAAGAGAACGTGGA+TGG - chr1.3:75295062-75295081 MS.gene71825:intron 50.0%
GCACTGTGGAGTTACTCTGT+TGG - chr1.3:75293998-75294017 MS.gene71825:intron 50.0%
GTGCCACAATCACCAAGCAT+TGG + chr1.3:75292570-75292589 None:intergenic 50.0%
TGAGGATGCCAAAGAGAACG+TGG - chr1.3:75295058-75295077 MS.gene71825:intron 50.0%
TTGAAGCTTCCTGCTTCTGG+TGG - chr1.3:75292243-75292262 MS.gene71825:intron 50.0%
TTGAATAGACCCCCTACAGG+AGG - chr1.3:75293776-75293795 MS.gene71825:intron 50.0%
TTTGCCAATGCCTCCTGTAG+GGG + chr1.3:75293789-75293808 None:intergenic 50.0%
! CTGCTGCATTTAGCTCATCC+TGG - chr1.3:75295087-75295106 MS.gene71825:intron 50.0%
! GTTCCCTGATGAGGGCTTTT+AGG - chr1.3:75292091-75292110 MS.gene71825:intron 50.0%
!! CTAAATGATGGGTGACTGGC+TGG - chr1.3:75291227-75291246 MS.gene71825:intron 50.0%
!! CTGCTTTTCCTTCGCTCCTA+AGG - chr1.3:75292433-75292452 MS.gene71825:CDS 50.0%
!! CTTCATTTCTGGGGTACTGG+TGG - chr1.3:75292889-75292908 MS.gene71825:intron 50.0%
!! GTGGAGAGCATTTCCAAGGT+AGG + chr1.3:75292337-75292356 None:intergenic 50.0%
!! GTGGCTAAATGATGGGTGAC+TGG - chr1.3:75291223-75291242 MS.gene71825:intron 50.0%
ACCTAGCCGTGGGAACTAGA+CGG + chr1.3:75293646-75293665 None:intergenic 55.0%
ATGCGGTTCGTTCCCTGATG+AGG - chr1.3:75292082-75292101 MS.gene71825:CDS 55.0%
CGGCTAGGTACTTTCCCCTT+AGG - chr1.3:75293657-75293676 MS.gene71825:CDS 55.0%
GCTTTGCCAATGCCTCCTGT+AGG + chr1.3:75293791-75293810 None:intergenic 55.0%
TATGCAGGTAGCCGAGAGCT+TGG + chr1.3:75294448-75294467 None:intergenic 55.0%
TGCGGTTCGTTCCCTGATGA+GGG - chr1.3:75292083-75292102 MS.gene71825:CDS 55.0%
TTGCCAATGCCTCCTGTAGG+GGG + chr1.3:75293788-75293807 None:intergenic 55.0%
TTGCGGAACACCTAGCACTG+TGG - chr1.3:75293984-75294003 MS.gene71825:intron 55.0%
! AGTAGCCCGTCTAGTTCCCA+CGG - chr1.3:75293637-75293656 MS.gene71825:CDS 55.0%
! CGGCATTTTTCCCGGCAGAA+GGG + chr1.3:75295406-75295425 None:intergenic 55.0%
! TCGGCATTTTTCCCGGCAGA+AGG + chr1.3:75295407-75295426 None:intergenic 55.0%
!! AAGGGGAAAGTACCTAGCCG+TGG + chr1.3:75293657-75293676 None:intergenic 55.0%
!! AGGGGAAAGTACCTAGCCGT+GGG + chr1.3:75293656-75293675 None:intergenic 55.0%
!! CATTTCTGGGGTACTGGTGG+AGG - chr1.3:75292892-75292911 MS.gene71825:intron 55.0%
CCTAGCCGTGGGAACTAGAC+GGG + chr1.3:75293645-75293664 None:intergenic 60.0%
TCAAGCGACAGCCCTTCTGC+CGG - chr1.3:75295392-75295411 MS.gene71825:intron 60.0%
! AGACCCCCTACAGGAGGCAT+TGG - chr1.3:75293782-75293801 MS.gene71825:intron 60.0%
! GCAGAAGGGCTGTCGCTTGA+AGG + chr1.3:75295392-75295411 None:intergenic 60.0%
CAAGCGACAGCCCTTCTGCC+GGG - chr1.3:75295393-75295412 MS.gene71825:intron 65.0%
! CCCGTCTAGTTCCCACGGCT+AGG - chr1.3:75293642-75293661 MS.gene71825:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 75290103 75295511 75290103 ID=MS.gene71825
chr1.3 mRNA 75290103 75295511 75290103 ID=MS.gene71825.t1;Parent=MS.gene71825
chr1.3 exon 75295402 75295511 75295402 ID=MS.gene71825.t1.exon1;Parent=MS.gene71825.t1
chr1.3 CDS 75295402 75295511 75295402 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75294716 75294787 75294716 ID=MS.gene71825.t1.exon2;Parent=MS.gene71825.t1
chr1.3 CDS 75294716 75294787 75294716 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75293147 75293692 75293147 ID=MS.gene71825.t1.exon3;Parent=MS.gene71825.t1
chr1.3 CDS 75293147 75293692 75293147 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75292429 75292731 75292429 ID=MS.gene71825.t1.exon4;Parent=MS.gene71825.t1
chr1.3 CDS 75292429 75292731 75292429 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75291779 75292108 75291779 ID=MS.gene71825.t1.exon5;Parent=MS.gene71825.t1
chr1.3 CDS 75291779 75292108 75291779 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75291491 75291697 75291491 ID=MS.gene71825.t1.exon6;Parent=MS.gene71825.t1
chr1.3 CDS 75291491 75291697 75291491 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75291300 75291386 75291300 ID=MS.gene71825.t1.exon7;Parent=MS.gene71825.t1
chr1.3 CDS 75291300 75291386 75291300 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75290732 75290826 75290732 ID=MS.gene71825.t1.exon8;Parent=MS.gene71825.t1
chr1.3 CDS 75290732 75290826 75290732 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75290488 75290631 75290488 ID=MS.gene71825.t1.exon9;Parent=MS.gene71825.t1
chr1.3 CDS 75290488 75290631 75290488 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
chr1.3 exon 75290103 75290346 75290103 ID=MS.gene71825.t1.exon10;Parent=MS.gene71825.t1
chr1.3 CDS 75290103 75290346 75290103 ID=cds.MS.gene71825.t1;Parent=MS.gene71825.t1
Gene Sequence

>MS.gene71825

AGATTAATGTGGATGGAGAAAATAATGTAAAAAGAAAGAGCAAGAAAAATTCCACGGTTGTGATTGAAGCAAAGCAACATAAGGAGCAAATAGAAAATCTTCAGCACAAGGTTAGACCCATTACATTACATTACATTGTTGTTTCTTAGTATACTAAGATACCTGTGTATGCAACTTTGCTTGTTCTTATTTGAAGGATTCTCTTTAATTTATTGTCTGTTTCAGCTTATTTGCTTATAAATTTTGTTTAAATGTCTGAGCTATTTTCGGCTTATTTTCATAAGTTCTCTAAGATAGCTTATGAAAACAACTAATAGCTTAACAAAAACAATTTAACTTTATTTTATCTTTTTCTATTGAAATAGCTTATACATAAGTGTTTATCATGAGAAGCGCTTATGCTATAAGCTGCAAGTAAGCTGCTTATCCAAACAGGGCCTTAATAGCTAAATATAAGTTTTGTCCTTTCAAGCAATGTTTATCTCTAGGTTGTTTACGTTTATATAATTTTATTAGAGAAATTAGACATATTGCATGTCCATAGGGTAGACGTAGACGAAGACAAGTAAAGGTTTCAGTGAAGGTTTTGATAATTTAATTCACATTTGCAAATGCTTGTATGTGTGAAATTTGAACTAGGTGGTGGTTGATAGGGAATTACCTTTTATATATTTATTGGGCTACATTCTGTTAGCAATGTTATTAACAACCTTTTCCATTGCAGGACGAAGATTTTTATGAGTACTTGAAAGAGAATGACCCGGATCTGCTTAAGTTCAGTGATGACGATATTGATGTATGTTTCATTTTAACACTTCCTATCTAATATCTGTCTTGTTTTTGCTTCATACATTAATTGAGATGAATATGGTTCTGTGATGCATTGAGCCATTGATGTGAGATGTGTATTTCAAATGAATGATATGCAGTATCTTCTAATGCCATCCTAGATATGGGAAAAAAATTCTTAGCTACTAAGCTTGCATTGGTTATCAATCTCTTCTGCTTCATACTTTTGTTTGTTTTGTATTAGGAAGATGTGGGTGCTAAGCTTGCATTGTTTGTTATCTTACCCAATATTTCTTTTTCCTTTTTTTTTCATCCGAAAAAGGTCATTGCAGTGGCTAAATGATGGGTGACTGGCTGGTTTCCCTTTAGAGACATGTTTGTGGCACAACACAACGAAATGTAAATTCAAGGCAAATGCTAACATGTGCTCTAAGGGCACATGTTTAGAAACTCAATAAAGAAACATTCATCATAAAAGTCATGCATTCAACTTTTAAAATTATTTTTTCATTGCAAAAGTTCCATTTTGTGTTCATTATTGGTAACCCACCAATCACTACAAATTTAATTTTTGCTTCTTGAGATTTGTATTTTTTTAGACCTATAGGCTATAAATCTTTTAGGTTAAGGTTATGGTTCTCCTATTAGATTTTGAGAAGACACTTGGGGTAGAGTCATGATATTTATTGAATCTCTTGTAAGCTATAGATGGTTTTACTTGAAATTTATGATCTATCCTTTAATCAAGATAGAAAATTTTGGACTGTGCTTGTGTGTTTGCTGGTAAATTGGTTGAAGAGGAATGCCGGTATTGTCAAGATTGCTCCTTTTTGCTGTTATGTTATATAGGATTTCACGTTCATCAACTATATTTCGTGCAGTGATCATAATTTGTAGGAAATCTCAAGAGATTGGTTTCAGTCTATTTTTTTTTTCTGTTACCTATTTGCATGCATTACTAAATTGCTATCAGTGTGACACTTTGTTAGCAATAGAAACTATATATAACTGTTTCGCTTCTTTTATCCAGGAAGATGTGGATGATGACATGGAAGATGGAGAACCACAGGTAGATGAGAAGGCTATTGAGCATGAGGTTCAAGCAAAGGATAAAAAACGTTCTAATAAAGTTATAACCACTTCTATGGTTGATTTGTGGTGCAAATCAATTAAAGAAAATGGGAGCTTAAATGCGGTTCGTTCCCTGATGAGGGCTTTTAGGACAGCATGCCACTATGGTGATGATGATGAGAATGATTCTACAGCAAAGCTTAGTGTAATGTCTAGCGTTGTGTTCAACAAAATAATGTTGACTGTACTTAATGAAATGGATGGAATACTAAGAAAATTGTTGAAGCTTCCTGCTTCTGGTGGAAGAAAAGAGATCATAATGGATTTGATGACTACAAAACAATGGAGGACTTATGGCCATATTGTGAAGTCCTACCTTGGAAATGCTCTCCACATTTTGAATCAAATGACTGACTCGCAAATGATATCATTTACTTTACATCGGCTAAAATATTCTTCATTGTTGTTGGCTGCTTTTCCTTCGCTCCTAAGGAAATATATCAAGGTACAAATAGTTCATTGGTCACCTCATCATTGTTCACTACAAAATTCATAGATGAGCATTAGTACTTTAAAGTTTGTGGCTCTGTACTGAATATGTCTTCCAATGCTTGGTGATTGTGGCACCATTCGGTCTTGTGCAGTAATTGATTAAAAAGCTTAATAGATGGACAGAAATCAACTAAATTTTTCTGAAATCTGGATCATATAAATGATACATTTTTCCGTACTCGAACAAAATTAAGAATAGTATCATTCGGTAAACTTGCTGTTGCATGCAGTTTTTTTCCCTTGTAAGTATATACTTCTGGTAATGTGAATGAAAAGGCTTCAATGCAAAGAACATTTGTGACTTGCTAGGACATAACTTAACATATGTCTATTCATTTGGTAAATTACTTTCTTGTTGAAATTATCAGGTGTCTCTTCATTTCTGGGGTACTGGTGGAGGTGCCCTTCCTGTTGTTTCGTGTCTATTCATGAGAGAGTTGTGCATCTGTATTGGATCTGGCTGCATAGATGATTGCTTTAAAGGAATATATAAAGCCTATGTTTTGAATTGCCATTTCGTAAATGCTGTGAAACTTAAACATATTCGTTTTCTTAGCAACTGCGTCATTGAACTTCTCGGAGTGGATCTTCCGACTGCATATCAACACGCCTTCATTTTCATTCGACAGTTGGCCATGATTTTAAGGGATGCACTTAATACAAAAACTAAGGTGCTGTTTATTTGTTCACTATATGTTATTTTCTTTCTTGTAACTGTAAGAAGTGCCTCGTAACATTTTGCTGCTAGAGGGATACAATCAATCACCTGGAACCAATCCTAACAATTGATCTATCCTGACTTATGAGCTTGACACTTCCGTATCTCATTAGTAATGAGTAAAGGAAATGTGACCAGACATTCCTTGATAGATTTGTTTTATTCGTGTTTGATTGGAGCTTTTCACTAATCAAAACAAATTGTTTGTGCATTTTTGACAATTTTATTTTATGGTTCTTACGTTGCTCTTCTTCGTCTGAATGTTTTCTTTAGGAAGCTTTTCGCAAGGTTTATGAATGGAAGTTCATTAACTCTCTTGAGCTTTGGACTGATGCTATCCGTGCTTATAGTTCACAATCTGACTTTAAGCAACTTGCATATCCACTGACCCAAATAATTTTTGGAGTAGCCCGTCTAGTTCCCACGGCTAGGTACTTTCCCCTTAGGTTGAGATGTATCCGGATGTTGAACCAGATTGCTGCTTCTACCCATTCTTTTGTACCAGTATCTATGCTCCTTTTGGATATGCTGGAGATGAAAGAGTTGAATAGACCCCCTACAGGAGGCATTGGCAAAGCTGTTGATTTACGCAGCATATTGAAGGTACTCGTTACTTGGTGAAATTGTGCATTTGTTGAAAACTTTAAATCCACCTAACCTTTTAAAGGTATTCTTGCATATTAGGTTAGCAAGCCAACTCTTAAGACACGGGCATTTCAAGAGGCTTGTGTTTTTTCTGTGGTTGAAGAACTTGCGGAACACCTAGCACTGTGGAGTTACTCTGTTGGGTTCATGGAGTTGTCTTTTATTCCAATTGTGAGGTTGCGCAACTTTTGCAAATTGACCAAAGTTGAAAGGTTTCGAAGAGAAATGAGGCAGCTTATTCGCGAGGTATCTTATTAAAAAGATCATAAACCTTTTATGTTTTACTTTTATCATTGGCATGCATCAGATTTTGTGGCATTCGTCTCTAATATTTAATTTTCCACACTCAGATTGAGGCTAATGTCCAGTTTGTGAATGAAAAGCGCATGTCGATTTCCTTTCTACCTAATGATCCTGCGGCATCATCTTTTCTTGAGGTTTGCTCAGATTTTCTCTTTACTTTTGAGGAATGAGTGAGAGTATTGATTGTTTCCTTGTTGGATGTTGGTTGACCTTTTTCATTCATTTGTTTACTTACATTGTAGCCTGCTCCATGTTTCAATTCTTCCAAGCTCTCGGCTACCTGCATAAAAACTTTTTTCCTTAAGCAAATAAACTTCTATAGGTTGTTACTTTATTACTGAAGACCAATGAAGTGACTGACGATGCTATTAAGTTATTTCATTTTGGTCTATATATCTGGCTAAACACTATCGTATGGTGGGAATTGAATGAAGTCATTTTATTGATGTTTAATGTTTTTGTGTTGCCATTTTCTTTTCCTTTATTTTATTATATCAAGTGTGTATAGATTATCGTCCCACTTATTTCACGCCTCAATGTCACTTTACTTTAAATTAAATGCCCATTTATATTTGAGAATTGTAAACAGTCAACTTGATTTTGATAGGATGAGAAGAAGTCAGCCTCTAGTGCACTATCAAAGTATGTTATAACACTCCGCCAGAGAGCAAAACAAAAAAACGACTCATTAAAGGAATCCAGGTTTGAATTTTAAATTCACCTCCATTCTCATGGATTACTGTGTCCAACATGCATACATCATTATCATATATGTTTCTTATATAACTTAAAAAATTTCCAGTGTTCTTGTTGGAGAAGAATCCTCTGTTTTTGGTGATGAAGAATCAGCAAGTGATGAGGAGGATACTAAAGAGAATGAGGATGCCAAAGAGAACGTGGATGGAACTGCTGCATTTAGCTCATCCTGGTTACCTGGAAATGACAAGTATTGCTCTTTTTCTTTGTTCATCTTTCACTGACAAACCCAGCTGCATACACAAACACACGTACATTCGTGCACATACTACACGATGACATTAACACAAATTTCTTTTTACTTTTTATCTGAGGAATGCTTTGCTTTCAGGATAAAACAACAGCCTACTGAACCAAAAGGAAAGAGGAAAAAGCATAAAAAAGAAAGAACTGCCATTGATGATGATGTTGTGGAGGACTTGGTACTTAGTTCTGATGAAGATGAAGATTTGCCTTCAAGCGACAGCCCTTCTGCCGGGAAAAATGCCGATGTTGATCATCATTCATCTCCAAAACAAAACCGCAAGACAAAGCATAAAACAAAAAGGTTGAAAAGGAATAAATCTCACACCTAA

Protein sequence

>MS.gene71825.t1

RLMWMEKIMUKERARKIPRLULKQSNIRSKUKIFSTRTKIFMSTUKRMTRICLSSVMTILMKMWMMTWKMENHRUMRRLLSMRFKQRIKNVLIKLUPLLWLICGANQLKKMGAUMRFVPUUGLLGQHATMVMMMRMILQQSLVUCLALCSTKUCULYLMKWMEYUENCUSFLLLVEEKRSUWIUULQNNGGLMAILUSPTLEMLSTFUIKULTRKUYHLLYIGUNILHCCWLLFLRSUGNISRCLFISGVLVEVPFLLFRVYSUESCASVLDLAAUMIALKEYIKPMFUIAISUMLUNLNIFVFLATASLNFSEWIFRLHINTPSFSFDSWPUFUGMHLIQKLRKLFARFMNGSSLTLLSFGLMLSVLIVHNLTLSNLHIHUPKUFLEUPVUFPRLGTFPLGUDVSGCUTRLLLLPILLYQYLCSFWICWRUKSUIDPLQEALAKLLIYAAYURLASQLLRHGHFKRLVFFLWLKNLRNTUHCGVTLLGSWSCLLFQLUGCATFANUPKLKGFEEKUGSLFARLRLMSSLUMKSACRFPFYLMILRHHLFLRMRRSQPLVHYQSMLUHSAREQNKKTTHURNPVFLLEKNPLFLVMKNQQVMRRILKRMRMPKRTWMELLHLAHPGYLEMTRUNNSLLNQKERGKSIKKKELPLMMMLWRTWYLVLMKMKICLQATALLPGKMPMLIIIHLQNKTARQSIKQKGUKGINLTP