Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77877.t1 | XP_003599439.1 | 90.1 | 403 | 32 | 1 | 1 | 395 | 1 | 403 | 7.80E-186 | 659.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77877.t1 | Q9ZSL6 | 56.8 | 301 | 120 | 2 | 103 | 393 | 114 | 414 | 2.4e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77877.t1 | G7J0X0 | 90.1 | 403 | 32 | 1 | 1 | 395 | 1 | 403 | 5.6e-186 | 659.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene77877 | 0.820092 | 8.23E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene77877 | -0.807512 | 4.88E-50 | -1.69E-46 |
| MS.gene050315 | MS.gene77877 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene77877 | 0.836471 | 9.18E-57 | -1.69E-46 |
| MS.gene050404 | MS.gene77877 | 0.84546 | 4.00E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene77877 | 0.865613 | 5.20E-65 | -1.69E-46 |
| MS.gene050426 | MS.gene77877 | -0.857982 | 1.13E-62 | -1.69E-46 |
| MS.gene050464 | MS.gene77877 | 0.831103 | 2.02E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene77877 | 0.839407 | 1.61E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene77877 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene77877 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene77877 | 0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene051158 | MS.gene77877 | -0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene77877 | 0.878508 | 2.65E-69 | -1.69E-46 |
| MS.gene051208 | MS.gene77877 | 0.827241 | 1.74E-54 | -1.69E-46 |
| MS.gene051240 | MS.gene77877 | 0.829198 | 5.89E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene77877 | 0.868986 | 4.34E-66 | -1.69E-46 |
| MS.gene051244 | MS.gene77877 | 0.8519 | 6.57E-61 | -1.69E-46 |
| MS.gene051525 | MS.gene77877 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene77877 | 0.826351 | 2.85E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene77877 | -0.838576 | 2.65E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene77877 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene77877 | 0.813089 | 3.05E-51 | -1.69E-46 |
| MS.gene052134 | MS.gene77877 | 0.852413 | 4.69E-61 | -1.69E-46 |
| MS.gene052135 | MS.gene77877 | 0.844788 | 6.09E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene77877 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene77877 | 0.812483 | 4.14E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene77877 | 0.822685 | 2.07E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene77877 | 0.833547 | 5.01E-56 | -1.69E-46 |
| MS.gene052469 | MS.gene77877 | 0.848527 | 5.79E-60 | -1.69E-46 |
| MS.gene052589 | MS.gene77877 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene052590 | MS.gene77877 | 0.804144 | 2.49E-49 | -1.69E-46 |
| MS.gene052758 | MS.gene77877 | 0.845852 | 3.14E-59 | -1.69E-46 |
| MS.gene053330 | MS.gene77877 | 0.914848 | 1.18E-84 | -1.69E-46 |
| MS.gene053907 | MS.gene77877 | 0.835982 | 1.22E-56 | -1.69E-46 |
| MS.gene053971 | MS.gene77877 | 0.875183 | 3.77E-68 | -1.69E-46 |
| MS.gene054102 | MS.gene77877 | 0.817495 | 3.20E-52 | -1.69E-46 |
| MS.gene054110 | MS.gene77877 | 0.823726 | 1.19E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene77877 | 0.807642 | 4.58E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene77877 | 0.81614 | 6.45E-52 | -1.69E-46 |
| MS.gene054810 | MS.gene77877 | -0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene77877 | -0.819736 | 9.93E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene77877 | 0.800848 | 1.19E-48 | -1.69E-46 |
| MS.gene055370 | MS.gene77877 | 0.897883 | 9.12E-77 | -1.69E-46 |
| MS.gene055539 | MS.gene77877 | 0.807815 | 4.20E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene77877 | 0.86673 | 2.30E-65 | -1.69E-46 |
| MS.gene055601 | MS.gene77877 | -0.80798 | 3.88E-50 | -1.69E-46 |
| MS.gene056233 | MS.gene77877 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene056305 | MS.gene77877 | 0.851216 | 1.03E-60 | -1.69E-46 |
| MS.gene056337 | MS.gene77877 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene056351 | MS.gene77877 | 0.808865 | 2.51E-50 | -1.69E-46 |
| MS.gene056451 | MS.gene77877 | 0.831755 | 1.39E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene77877 | 0.834862 | 2.34E-56 | -1.69E-46 |
| MS.gene056633 | MS.gene77877 | 0.917534 | 4.72E-86 | -1.69E-46 |
| MS.gene056659 | MS.gene77877 | 0.821452 | 4.01E-53 | -1.69E-46 |
| MS.gene056664 | MS.gene77877 | 0.887809 | 1.03E-72 | -1.69E-46 |
| MS.gene056796 | MS.gene77877 | 0.806298 | 8.81E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene77877 | -0.833619 | 4.81E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene77877 | 0.817649 | 2.96E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene77877 | 0.801581 | 8.41E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene77877 | 0.832086 | 1.16E-55 | -1.69E-46 |
| MS.gene057332 | MS.gene77877 | 0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene77877 | 0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene77877 | 0.84224 | 2.92E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene77877 | 0.867973 | 9.22E-66 | -1.69E-46 |
| MS.gene058276 | MS.gene77877 | 0.867652 | 1.17E-65 | -1.69E-46 |
| MS.gene058743 | MS.gene77877 | 0.828262 | 9.92E-55 | -1.69E-46 |
| MS.gene058746 | MS.gene77877 | 0.927021 | 2.10E-91 | -1.69E-46 |
| MS.gene059011 | MS.gene77877 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene77877 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene77877 | 0.869511 | 2.93E-66 | -1.69E-46 |
| MS.gene05984 | MS.gene77877 | 0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene77877 | 0.839731 | 1.33E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene77877 | 0.879214 | 1.50E-69 | -1.69E-46 |
| MS.gene061049 | MS.gene77877 | 0.8334 | 5.45E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene77877 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene77877 | 0.801917 | 7.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77877 | MS.gene052009 | PPI |
| MS.gene032180 | MS.gene77877 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77877.t1 | MTR_3g033420 | 92.060 | 403 | 24 | 1 | 1 | 395 | 1 | 403 | 0.0 | 685 |
| MS.gene77877.t1 | MTR_3g033150 | 95.455 | 154 | 7 | 0 | 242 | 395 | 1 | 154 | 2.81e-93 | 276 |
| MS.gene77877.t1 | MTR_7g101840 | 35.333 | 300 | 181 | 1 | 108 | 394 | 254 | 553 | 3.16e-48 | 172 |
| MS.gene77877.t1 | MTR_3g118290 | 36.709 | 237 | 150 | 0 | 159 | 395 | 335 | 571 | 1.07e-45 | 166 |
| MS.gene77877.t1 | MTR_1g063850 | 31.949 | 313 | 195 | 3 | 95 | 394 | 250 | 557 | 1.79e-42 | 156 |
| MS.gene77877.t1 | MTR_0172s0030 | 37.269 | 271 | 152 | 5 | 124 | 383 | 227 | 490 | 9.02e-40 | 148 |
| MS.gene77877.t1 | MTR_1g007370 | 33.468 | 248 | 158 | 2 | 148 | 394 | 306 | 547 | 5.51e-38 | 144 |
| MS.gene77877.t1 | MTR_3g090900 | 28.794 | 257 | 176 | 4 | 143 | 395 | 261 | 514 | 2.94e-18 | 87.0 |
| MS.gene77877.t1 | MTR_1g007370 | 39.326 | 89 | 54 | 0 | 148 | 236 | 306 | 394 | 4.90e-16 | 79.7 |
| MS.gene77877.t1 | MTR_3g090900 | 29.448 | 163 | 110 | 3 | 143 | 301 | 261 | 422 | 6.16e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77877.t1 | AT5G13730 | 56.811 | 301 | 120 | 2 | 103 | 393 | 114 | 414 | 1.74e-112 | 335 |
| MS.gene77877.t1 | AT2G36990 | 32.566 | 304 | 190 | 2 | 105 | 394 | 241 | 543 | 3.14e-46 | 166 |
| MS.gene77877.t1 | AT1G08540 | 35.865 | 237 | 152 | 0 | 159 | 395 | 333 | 569 | 3.40e-44 | 161 |
| MS.gene77877.t1 | AT1G64860 | 34.983 | 303 | 170 | 6 | 103 | 383 | 191 | 488 | 7.07e-39 | 145 |
| MS.gene77877.t1 | AT3G53920 | 33.333 | 237 | 157 | 1 | 159 | 394 | 333 | 569 | 3.70e-35 | 136 |
| MS.gene77877.t1 | AT1G64860 | 33.808 | 281 | 159 | 6 | 103 | 361 | 191 | 466 | 1.92e-31 | 125 |
| MS.gene77877.t1 | AT5G24120 | 27.064 | 218 | 151 | 3 | 181 | 395 | 305 | 517 | 4.72e-16 | 80.1 |
| MS.gene77877.t1 | AT5G24120 | 27.064 | 218 | 151 | 3 | 181 | 395 | 305 | 517 | 4.72e-16 | 80.1 |
| MS.gene77877.t1 | AT5G24120 | 27.064 | 218 | 151 | 3 | 181 | 395 | 305 | 517 | 4.72e-16 | 80.1 |
| MS.gene77877.t1 | AT3G53920 | 42.308 | 78 | 45 | 0 | 159 | 236 | 333 | 410 | 1.31e-14 | 75.5 |
Find 73 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTACAAATTTGGTTTA+TGG | 0.152805 | 3.4:-25256616 | MS.gene77877:CDS |
| CTCAAAGGTTGGTACAAATT+TGG | 0.165763 | 3.4:-25256623 | MS.gene77877:CDS |
| ATAGCTCTGTCCAATGAAAT+TGG | 0.295581 | 3.4:+25254725 | None:intergenic |
| ACAAGGCATGATTAAAGCTT+TGG | 0.334814 | 3.4:-25255515 | MS.gene77877:CDS |
| TATTTATAGGGAGAAAAGTA+TGG | 0.343959 | 3.4:-25254884 | MS.gene77877:intron |
| GCTAGAAATGCTGCAGCTGC+TGG | 0.362443 | 3.4:-25256529 | MS.gene77877:CDS |
| TGCTATTTCAAGGTTTACTT+TGG | 0.382886 | 3.4:-25255838 | MS.gene77877:CDS |
| GGAACCATTGGACTTCTTCA+TGG | 0.384588 | 3.4:-25255601 | MS.gene77877:CDS |
| ATATTATACTTTGGACTCAA+TGG | 0.405310 | 3.4:-25254432 | MS.gene77877:CDS |
| GTTGTAGGGTCTGTGACATC+AGG | 0.407779 | 3.4:-25256397 | MS.gene77877:CDS |
| AGCTGCATCCACAGCATCAT+TGG | 0.408165 | 3.4:+25256549 | None:intergenic |
| GTCTTTAGAGATGGAAAAGT+TGG | 0.408480 | 3.4:+25256685 | None:intergenic |
| TTCTCCGGAATCATTTCAAC+TGG | 0.416683 | 3.4:+25254534 | None:intergenic |
| GAGCAGACAACCAATTTCAT+TGG | 0.418328 | 3.4:-25254735 | MS.gene77877:CDS |
| AGCTGTCTACATATGTTTAC+TGG | 0.421708 | 3.4:-25255546 | MS.gene77877:CDS |
| CAAATTTGTACCAACCTTTG+AGG | 0.425468 | 3.4:+25256624 | None:intergenic |
| AAGGGAATTATGCTATTTCA+AGG | 0.430126 | 3.4:-25255848 | MS.gene77877:CDS |
| CACCGGTAATCTGACTAATC+TGG | 0.431896 | 3.4:+25255483 | None:intergenic |
| GAGATTGTAATATTATACTT+TGG | 0.445378 | 3.4:-25254441 | MS.gene77877:CDS |
| GTCCAGATTAGTCAGATTAC+CGG | 0.449365 | 3.4:-25255485 | MS.gene77877:intron |
| CTATCTCCTCAAAAGACAAA+GGG | 0.452640 | 3.4:+25254403 | None:intergenic |
| TTAAGGCAGAAAGAGGTTGT+AGG | 0.464002 | 3.4:-25256412 | MS.gene77877:CDS |
| GAGAAATTTGATCCGGATAG+AGG | 0.468549 | 3.4:-25255574 | MS.gene77877:CDS |
| GAAAGCTGTTGAAACTATCA+AGG | 0.471546 | 3.4:-25254380 | MS.gene77877:CDS |
| ATGATATGAGGAGGAAGAGA+AGG | 0.474045 | 3.4:-25256495 | MS.gene77877:CDS |
| CAGTTTCTTAAGGCAGAAAG+AGG | 0.476375 | 3.4:-25256419 | MS.gene77877:CDS |
| TGAAATGATTCCGGAGAAGA+TGG | 0.476752 | 3.4:-25254529 | MS.gene77877:CDS |
| ATGTTGAGAACAGTTTCTTA+AGG | 0.494620 | 3.4:-25256429 | MS.gene77877:CDS |
| AAATTTGTACCAACCTTTGA+GGG | 0.497738 | 3.4:+25256625 | None:intergenic |
| TTTAACCAGGAAGGAACCAT+TGG | 0.503437 | 3.4:-25255613 | MS.gene77877:intron |
| AGAGGCAGTTAGTGAAGCAA+GGG | 0.505063 | 3.4:-25254503 | MS.gene77877:CDS |
| TGAGCTTTGTTTATGTCTCA+AGG | 0.505679 | 3.4:-25256350 | MS.gene77877:intron |
| GAGAGGATCAGACAGATTCA+TGG | 0.512718 | 3.4:-25254357 | MS.gene77877:CDS |
| GAATAGCAATTGATGATATG+AGG | 0.512771 | 3.4:-25256507 | MS.gene77877:CDS |
| GGAATCATTTCAACTGGTCC+TGG | 0.514681 | 3.4:+25254540 | None:intergenic |
| ACCTACTATTACACCCTCAA+AGG | 0.515388 | 3.4:-25256638 | MS.gene77877:CDS |
| AGGACCAGTTGAAATGATTC+CGG | 0.517293 | 3.4:-25254538 | MS.gene77877:CDS |
| TGCCTCTCAACCATCTTCTC+CGG | 0.517628 | 3.4:+25254519 | None:intergenic |
| GACAGCTTACATCCTCTATC+CGG | 0.518858 | 3.4:+25255562 | None:intergenic |
| TGGAGCAGAGAAATTTGATC+CGG | 0.520546 | 3.4:-25255581 | MS.gene77877:CDS |
| ACCTTTGAGGGTGTAATAGT+AGG | 0.520956 | 3.4:+25256637 | None:intergenic |
| TAAGGCAGAAAGAGGTTGTA+GGG | 0.522827 | 3.4:-25256411 | MS.gene77877:CDS |
| CTGTAAAACTTGTTTCTGAA+AGG | 0.534187 | 3.4:-25254757 | MS.gene77877:CDS |
| TCAATCGCAACACGATATCA+AGG | 0.537772 | 3.4:-25255732 | MS.gene77877:CDS |
| CCTATCTCCTCAAAAGACAA+AGG | 0.538706 | 3.4:+25254402 | None:intergenic |
| TCAGCAATTTCATTATATGT+CGG | 0.554776 | 3.4:+25254803 | None:intergenic |
| TTGTAGGGTCTGTGACATCA+GGG | 0.556165 | 3.4:-25256396 | MS.gene77877:CDS |
| GAGAGGCAGTTAGTGAAGCA+AGG | 0.557933 | 3.4:-25254504 | MS.gene77877:CDS |
| GAATGGTGTGTCTTTAGAGA+TGG | 0.559338 | 3.4:+25256676 | None:intergenic |
| ATAGGGAGAAAAGTATGGAA+TGG | 0.569556 | 3.4:-25254879 | MS.gene77877:intron |
| TGTTGAAACTATCAAGGGAG+AGG | 0.571469 | 3.4:-25254374 | MS.gene77877:CDS |
| ACTATTACACCCTCAAAGGT+TGG | 0.581517 | 3.4:-25256634 | MS.gene77877:CDS |
| TGCTCCATGAAGAAGTCCAA+TGG | 0.596543 | 3.4:+25255597 | None:intergenic |
| TGGAAGTGATGTTAGAGACA+TGG | 0.602214 | 3.4:+25256705 | None:intergenic |
| ATAATGCAGGAGATTATACC+AGG | 0.604707 | 3.4:-25254558 | MS.gene77877:intron |
| GGGGCAAAGATAGAAAATGA+AGG | 0.606263 | 3.4:-25255867 | MS.gene77877:CDS |
| AAGCATTCAAGATCTCATCC+AGG | 0.606664 | 3.4:-25255700 | MS.gene77877:intron |
| TGTCTACATATGTTTACTGG+TGG | 0.613609 | 3.4:-25255543 | MS.gene77877:CDS |
| GTTTACTGGTGGATTAAACA+AGG | 0.614224 | 3.4:-25255532 | MS.gene77877:CDS |
| TCAGAGCAACTTAATACTGA+AGG | 0.620679 | 3.4:-25254696 | MS.gene77877:intron |
| TTCCGGAGAAGATGGTTGAG+AGG | 0.622689 | 3.4:-25254521 | MS.gene77877:CDS |
| GCAACACGATATCAAGGCAA+AGG | 0.632504 | 3.4:-25255726 | MS.gene77877:CDS |
| TGGTGATGCATTAGTCATTG+TGG | 0.632961 | 3.4:-25256596 | MS.gene77877:CDS |
| GGGCAAAGATAGAAAATGAA+GGG | 0.633655 | 3.4:-25255866 | MS.gene77877:CDS |
| AAAGCTGTTGAAACTATCAA+GGG | 0.636294 | 3.4:-25254379 | MS.gene77877:CDS |
| TGCATTAGCCAATGATGCTG+TGG | 0.639996 | 3.4:-25256557 | MS.gene77877:CDS |
| GACATATAATGAAATTGCTG+AGG | 0.644481 | 3.4:-25254801 | MS.gene77877:CDS |
| TAGCAATTGATGATATGAGG+AGG | 0.652900 | 3.4:-25256504 | MS.gene77877:CDS |
| GAGGCAGTTAGTGAAGCAAG+GGG | 0.667329 | 3.4:-25254502 | MS.gene77877:CDS |
| TCTTAAGACGAAGACTGAGG+CGG | 0.681542 | 3.4:-25254829 | MS.gene77877:CDS |
| TATCTCCTCAAAAGACAAAG+GGG | 0.686203 | 3.4:+25254404 | None:intergenic |
| AGATTAGCTCGTGATTATCG+CGG | 0.696504 | 3.4:-25255765 | MS.gene77877:CDS |
| ATGTCTTAAGACGAAGACTG+AGG | 0.725315 | 3.4:-25254832 | MS.gene77877:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAACATTTTTTG+GGG | - | chr3.4:25255544-25255563 | MS.gene77877:CDS | 10.0% |
| !! | AAAATTTGCATTATACAAAA+TGG | + | chr3.4:25255034-25255053 | None:intergenic | 15.0% |
| !! | TAAAAATAATATGAAAAGTG+TGG | - | chr3.4:25254854-25254873 | MS.gene77877:CDS | 15.0% |
| !!! | TTTTTTATAACATTTTTTGG+GGG | - | chr3.4:25255545-25255564 | MS.gene77877:CDS | 15.0% |
| !! | AACTGTTTATTATGAATGTT+TGG | - | chr3.4:25256080-25256099 | MS.gene77877:intron | 20.0% |
| !! | AATGGTTAATGAATATAACA+TGG | + | chr3.4:25254939-25254958 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAGGAAAAATTT+GGG | - | chr3.4:25254524-25254543 | MS.gene77877:CDS | 20.0% |
| !! | ATAAAAAAAATTTGTCTCAC+CGG | + | chr3.4:25255533-25255552 | None:intergenic | 20.0% |
| !! | ATAAACAGATCATTGTTTAA+TGG | + | chr3.4:25255004-25255023 | None:intergenic | 20.0% |
| !! | ATAAACCGGAAAAATAAAAT+TGG | - | chr3.4:25255975-25255994 | MS.gene77877:intron | 20.0% |
| !! | GAGATTGTAATATTATACTT+TGG | - | chr3.4:25256555-25256574 | MS.gene77877:CDS | 20.0% |
| !!! | ACTATTTTACAACTATTCTA+AGG | - | chr3.4:25255609-25255628 | MS.gene77877:intron | 20.0% |
| !!! | AGTAACCAATTTTATTTTTC+CGG | + | chr3.4:25255983-25256002 | None:intergenic | 20.0% |
| !!! | ATTTGTTAAAGTTTCTCATT+AGG | - | chr3.4:25255348-25255367 | MS.gene77877:intron | 20.0% |
| !!! | CATTGTTTAATGGATAAATT+TGG | + | chr3.4:25254994-25255013 | None:intergenic | 20.0% |
| !!! | TGGTTAGTTTGTTATTTATA+GGG | - | chr3.4:25256100-25256119 | MS.gene77877:intron | 20.0% |
| !!! | TTGGTTAGTTTGTTATTTAT+AGG | - | chr3.4:25256099-25256118 | MS.gene77877:intron | 20.0% |
| !!! | TTTATTTTTCCGGTTTATAA+CGG | + | chr3.4:25255973-25255992 | None:intergenic | 20.0% |
| ! | AACCAATCATATGCTAAATT+TGG | - | chr3.4:25255761-25255780 | MS.gene77877:CDS | 25.0% |
| ! | ATATTATACTTTGGACTCAA+TGG | - | chr3.4:25256564-25256583 | MS.gene77877:CDS | 25.0% |
| ! | GAGAAAAAGAAGGAAAAATT+TGG | - | chr3.4:25254523-25254542 | MS.gene77877:CDS | 25.0% |
| ! | GTTCTTAAGATTACAATTCT+AGG | + | chr3.4:25254819-25254838 | None:intergenic | 25.0% |
| ! | TATTTATAGGGAGAAAAGTA+TGG | - | chr3.4:25256112-25256131 | MS.gene77877:intron | 25.0% |
| ! | TCAGCAATTTCATTATATGT+CGG | + | chr3.4:25256196-25256215 | None:intergenic | 25.0% |
| ! | TGTTTACTATGATATAATGC+AGG | - | chr3.4:25256425-25256444 | MS.gene77877:CDS | 25.0% |
| ! | TTTAATTCATTTAACCAGGA+AGG | - | chr3.4:25255374-25255393 | MS.gene77877:intron | 25.0% |
| !! | GTAAATTTTGTTGAAGTGAA+TGG | + | chr3.4:25254340-25254359 | None:intergenic | 25.0% |
| !! | TATAATGCAAATTTTCTTGC+TGG | - | chr3.4:25255039-25255058 | MS.gene77877:intron | 25.0% |
| !!! | GCATTTTAATTCATTTAACC+AGG | - | chr3.4:25255370-25255389 | MS.gene77877:intron | 25.0% |
| AAAGCTGTTGAAACTATCAA+GGG | - | chr3.4:25256617-25256636 | MS.gene77877:CDS | 30.0% | |
| AAATTTGTACCAACCTTTGA+GGG | + | chr3.4:25254374-25254393 | None:intergenic | 30.0% | |
| AGTGATATACCGTTATAAAC+CGG | - | chr3.4:25255961-25255980 | MS.gene77877:intron | 30.0% | |
| ATGTTGAGAACAGTTTCTTA+AGG | - | chr3.4:25254567-25254586 | MS.gene77877:intron | 30.0% | |
| ATTCATATTCCATCACTAAC+AGG | - | chr3.4:25255073-25255092 | MS.gene77877:intron | 30.0% | |
| CACCAAATTTAGCATATGAT+TGG | + | chr3.4:25255766-25255785 | None:intergenic | 30.0% | |
| CGTGAATTGTGAAAACTTAA+CGG | + | chr3.4:25255801-25255820 | None:intergenic | 30.0% | |
| CGTTAATTATGCTCAATGAA+TGG | + | chr3.4:25254957-25254976 | None:intergenic | 30.0% | |
| GACATATAATGAAATTGCTG+AGG | - | chr3.4:25256195-25256214 | MS.gene77877:intron | 30.0% | |
| TTGATTAGACGAAGTTAGTT+AGG | - | chr3.4:25255836-25255855 | MS.gene77877:CDS | 30.0% | |
| TTTGTGTGTTGAATAACAAC+AGG | - | chr3.4:25255104-25255123 | MS.gene77877:intron | 30.0% | |
| ! | AAGGAAAAATTTGGGATGTA+TGG | - | chr3.4:25254532-25254551 | MS.gene77877:CDS | 30.0% |
| ! | ACTTTTACTGACGTATGTTT+CGG | + | chr3.4:25255906-25255925 | None:intergenic | 30.0% |
| ! | GAATAGCAATTGATGATATG+AGG | - | chr3.4:25254489-25254508 | MS.gene77877:CDS | 30.0% |
| ! | GTTAACGATGTTTAAAATCG+TGG | - | chr3.4:25254876-25254895 | MS.gene77877:CDS | 30.0% |
| ! | GTTGGTACAAATTTGGTTTA+TGG | - | chr3.4:25254380-25254399 | MS.gene77877:CDS | 30.0% |
| !! | AAGGGAATTATGCTATTTCA+AGG | - | chr3.4:25255148-25255167 | MS.gene77877:intron | 30.0% |
| !! | CTGTAAAACTTGTTTCTGAA+AGG | - | chr3.4:25256239-25256258 | MS.gene77877:intron | 30.0% |
| !! | TGCTATTTCAAGGTTTACTT+TGG | - | chr3.4:25255158-25255177 | MS.gene77877:intron | 30.0% |
| AAAAACAACCATGTTGCTCA+AGG | + | chr3.4:25255730-25255749 | None:intergenic | 35.0% | |
| ACAAGGCATGATTAAAGCTT+TGG | - | chr3.4:25255481-25255500 | MS.gene77877:intron | 35.0% | |
| AGCTGTCTACATATGTTTAC+TGG | - | chr3.4:25255450-25255469 | MS.gene77877:intron | 35.0% | |
| ATAATGCAGGAGATTATACC+AGG | - | chr3.4:25256438-25256457 | MS.gene77877:CDS | 35.0% | |
| ATGCATAATCCTGTTAGTGA+TGG | + | chr3.4:25255085-25255104 | None:intergenic | 35.0% | |
| CAAATTTGTACCAACCTTTG+AGG | + | chr3.4:25254375-25254394 | None:intergenic | 35.0% | |
| CTATCTCCTCAAAAGACAAA+GGG | + | chr3.4:25256596-25256615 | None:intergenic | 35.0% | |
| GAAAGCTGTTGAAACTATCA+AGG | - | chr3.4:25256616-25256635 | MS.gene77877:CDS | 35.0% | |
| GGGCAAAGATAGAAAATGAA+GGG | - | chr3.4:25255130-25255149 | MS.gene77877:intron | 35.0% | |
| TAGACGAAGTTAGTTAGGTA+TGG | - | chr3.4:25255841-25255860 | MS.gene77877:CDS | 35.0% | |
| TATCTCCTCAAAAGACAAAG+GGG | + | chr3.4:25256595-25256614 | None:intergenic | 35.0% | |
| TCAGAGCAACTTAATACTGA+AGG | - | chr3.4:25256300-25256319 | MS.gene77877:intron | 35.0% | |
| TCGTGGTTAATTGTGTTATG+TGG | - | chr3.4:25254893-25254912 | MS.gene77877:intron | 35.0% | |
| TGTCTACATATGTTTACTGG+TGG | - | chr3.4:25255453-25255472 | MS.gene77877:intron | 35.0% | |
| TGTGTTGAATAACAACAGGA+GGG | - | chr3.4:25255108-25255127 | MS.gene77877:intron | 35.0% | |
| ! | ATAGCTCTGTCCAATGAAAT+TGG | + | chr3.4:25256274-25256293 | None:intergenic | 35.0% |
| ! | ATAGGGAGAAAAGTATGGAA+TGG | - | chr3.4:25256117-25256136 | MS.gene77877:intron | 35.0% |
| ! | CACTATTTTCACAGTCTCTT+TGG | - | chr3.4:25256006-25256025 | MS.gene77877:intron | 35.0% |
| ! | GAAAAATTTGGGATGTATGG+TGG | - | chr3.4:25254535-25254554 | MS.gene77877:CDS | 35.0% |
| ! | GTCTTTAGAGATGGAAAAGT+TGG | + | chr3.4:25254314-25254333 | None:intergenic | 35.0% |
| ! | TAGCAATTGATGATATGAGG+AGG | - | chr3.4:25254492-25254511 | MS.gene77877:CDS | 35.0% |
| !! | ATTTTAGTCCCTAAAGTTGC+AGG | - | chr3.4:25254703-25254722 | MS.gene77877:CDS | 35.0% |
| !! | CTCAAAGGTTGGTACAAATT+TGG | - | chr3.4:25254373-25254392 | MS.gene77877:CDS | 35.0% |
| !! | GATTTTAACCTTGAGCAACA+TGG | - | chr3.4:25255719-25255738 | MS.gene77877:CDS | 35.0% |
| !! | GTTTACTGGTGGATTAAACA+AGG | - | chr3.4:25255464-25255483 | MS.gene77877:intron | 35.0% |
| !! | TGAGCTTTGTTTATGTCTCA+AGG | - | chr3.4:25254646-25254665 | MS.gene77877:intron | 35.0% |
| !!! | GTTTTTGAGTTCAACAGAAG+AGG | - | chr3.4:25254622-25254641 | MS.gene77877:intron | 35.0% |
| AAGCATTCAAGATCTCATCC+AGG | - | chr3.4:25255296-25255315 | MS.gene77877:intron | 40.0% | |
| ACCTACTATTACACCCTCAA+AGG | - | chr3.4:25254358-25254377 | MS.gene77877:CDS | 40.0% | |
| ACTATTACACCCTCAAAGGT+TGG | - | chr3.4:25254362-25254381 | MS.gene77877:CDS | 40.0% | |
| AGGACCAGTTGAAATGATTC+CGG | - | chr3.4:25256458-25256477 | MS.gene77877:CDS | 40.0% | |
| ATGATATGAGGAGGAAGAGA+AGG | - | chr3.4:25254501-25254520 | MS.gene77877:CDS | 40.0% | |
| ATGTCTTAAGACGAAGACTG+AGG | - | chr3.4:25256164-25256183 | MS.gene77877:intron | 40.0% | |
| CAGTTTCTTAAGGCAGAAAG+AGG | - | chr3.4:25254577-25254596 | MS.gene77877:intron | 40.0% | |
| CCTATCTCCTCAAAAGACAA+AGG | + | chr3.4:25256597-25256616 | None:intergenic | 40.0% | |
| GAAATGTGTTAGTATGCACC+TGG | + | chr3.4:25255317-25255336 | None:intergenic | 40.0% | |
| GACACTCTTAATTCAGTCTC+TGG | + | chr3.4:25254797-25254816 | None:intergenic | 40.0% | |
| GAGAAATTTGATCCGGATAG+AGG | - | chr3.4:25255422-25255441 | MS.gene77877:intron | 40.0% | |
| GAGCAGACAACCAATTTCAT+TGG | - | chr3.4:25256261-25256280 | MS.gene77877:intron | 40.0% | |
| GGAAGAGAAGGAGAAAAAGA+AGG | - | chr3.4:25254513-25254532 | MS.gene77877:CDS | 40.0% | |
| GGGGCAAAGATAGAAAATGA+AGG | - | chr3.4:25255129-25255148 | MS.gene77877:intron | 40.0% | |
| GTGTGTTGAATAACAACAGG+AGG | - | chr3.4:25255107-25255126 | MS.gene77877:intron | 40.0% | |
| GTGTTGAATAACAACAGGAG+GGG | - | chr3.4:25255109-25255128 | MS.gene77877:intron | 40.0% | |
| TAAGGCAGAAAGAGGTTGTA+GGG | - | chr3.4:25254585-25254604 | MS.gene77877:intron | 40.0% | |
| TCAATCGCAACACGATATCA+AGG | - | chr3.4:25255264-25255283 | MS.gene77877:intron | 40.0% | |
| TGAAATGATTCCGGAGAAGA+TGG | - | chr3.4:25256467-25256486 | MS.gene77877:CDS | 40.0% | |
| TGGAATGGTTGCAAAAATCG+CGG | - | chr3.4:25256132-25256151 | MS.gene77877:intron | 40.0% | |
| TGGAGCAGAGAAATTTGATC+CGG | - | chr3.4:25255415-25255434 | MS.gene77877:intron | 40.0% | |
| TGTTGAAACTATCAAGGGAG+AGG | - | chr3.4:25256622-25256641 | MS.gene77877:CDS | 40.0% | |
| TGTTGAATAACAACAGGAGG+GGG | - | chr3.4:25255110-25255129 | MS.gene77877:intron | 40.0% | |
| TTAAGGCAGAAAGAGGTTGT+AGG | - | chr3.4:25254584-25254603 | MS.gene77877:intron | 40.0% | |
| TTAGTTAGGTATGGTGCATG+CGG | - | chr3.4:25255850-25255869 | MS.gene77877:CDS | 40.0% | |
| TTCTCCGGAATCATTTCAAC+TGG | + | chr3.4:25256465-25256484 | None:intergenic | 40.0% | |
| TTTAACCAGGAAGGAACCAT+TGG | - | chr3.4:25255383-25255402 | MS.gene77877:intron | 40.0% | |
| ! | ACCTTTGAGGGTGTAATAGT+AGG | + | chr3.4:25254362-25254381 | None:intergenic | 40.0% |
| ! | AGATTAGCTCGTGATTATCG+CGG | - | chr3.4:25255231-25255250 | MS.gene77877:intron | 40.0% |
| ! | GAATGGTGTGTCTTTAGAGA+TGG | + | chr3.4:25254323-25254342 | None:intergenic | 40.0% |
| ! | GTCCAGATTAGTCAGATTAC+CGG | - | chr3.4:25255511-25255530 | MS.gene77877:CDS | 40.0% |
| ! | TGGTGATGCATTAGTCATTG+TGG | - | chr3.4:25254400-25254419 | MS.gene77877:CDS | 40.0% |
| !! | CCTTTGTCTTTTGAGGAGAT+AGG | - | chr3.4:25256594-25256613 | MS.gene77877:CDS | 40.0% |
| !!! | ATAACATTTTTTGGGGGCGA+GGG | - | chr3.4:25255551-25255570 | MS.gene77877:CDS | 40.0% |
| !!! | TATAACATTTTTTGGGGGCG+AGG | - | chr3.4:25255550-25255569 | MS.gene77877:CDS | 40.0% |
| AATGGTTGCAAAAATCGCGG+AGG | - | chr3.4:25256135-25256154 | MS.gene77877:intron | 45.0% | |
| AGAGGCAGTTAGTGAAGCAA+GGG | - | chr3.4:25256493-25256512 | MS.gene77877:CDS | 45.0% | |
| CACCGGTAATCTGACTAATC+TGG | + | chr3.4:25255516-25255535 | None:intergenic | 45.0% | |
| CTAAAGTTGCAGGCATCAGT+CGG | - | chr3.4:25254713-25254732 | MS.gene77877:CDS | 45.0% | |
| GACAGCTTACATCCTCTATC+CGG | + | chr3.4:25255437-25255456 | None:intergenic | 45.0% | |
| GACTGATGCCTGCAACTTTA+GGG | + | chr3.4:25254714-25254733 | None:intergenic | 45.0% | |
| GAGAGGATCAGACAGATTCA+TGG | - | chr3.4:25256639-25256658 | MS.gene77877:CDS | 45.0% | |
| GCAACACGATATCAAGGCAA+AGG | - | chr3.4:25255270-25255289 | MS.gene77877:intron | 45.0% | |
| GGAACCATTGGACTTCTTCA+TGG | - | chr3.4:25255395-25255414 | MS.gene77877:intron | 45.0% | |
| GGAATCATTTCAACTGGTCC+TGG | + | chr3.4:25256459-25256478 | None:intergenic | 45.0% | |
| TATTTGAACCGCGTCTCTTG+AGG | - | chr3.4:25255633-25255652 | MS.gene77877:intron | 45.0% | |
| TCTTAAGACGAAGACTGAGG+CGG | - | chr3.4:25256167-25256186 | MS.gene77877:intron | 45.0% | |
| TGCATTAGCCAATGATGCTG+TGG | - | chr3.4:25254439-25254458 | MS.gene77877:CDS | 45.0% | |
| TGCTCCATGAAGAAGTCCAA+TGG | + | chr3.4:25255402-25255421 | None:intergenic | 45.0% | |
| TTGTAGGGTCTGTGACATCA+GGG | - | chr3.4:25254600-25254619 | MS.gene77877:intron | 45.0% | |
| ! | AGAGACCCCTTTGTCTTTTG+AGG | - | chr3.4:25256587-25256606 | MS.gene77877:CDS | 45.0% |
| !!! | TAACATTTTTTGGGGGCGAG+GGG | - | chr3.4:25255552-25255571 | MS.gene77877:CDS | 45.0% |
| !! | TTATAAGTTATATTATAAAA+GGG | - | chr3.4:25254679-25254698 | MS.gene77877:intron | 5.0% |
| !! | TTTATAAGTTATATTATAAA+AGG | - | chr3.4:25254678-25254697 | MS.gene77877:intron | 5.0% |
| !!! | ATTTTTTTTATAACATTTTT+TGG | - | chr3.4:25255542-25255561 | MS.gene77877:CDS | 5.0% |
| !!! | TTTTTTTTATAACATTTTTT+GGG | - | chr3.4:25255543-25255562 | MS.gene77877:CDS | 5.0% |
| AGCTGCATCCACAGCATCAT+TGG | + | chr3.4:25254450-25254469 | None:intergenic | 50.0% | |
| CCTTGTAACCTCAAGAGACG+CGG | + | chr3.4:25255644-25255663 | None:intergenic | 50.0% | |
| CGACTGATGCCTGCAACTTT+AGG | + | chr3.4:25254715-25254734 | None:intergenic | 50.0% | |
| GAAGTCCAATGGTTCCTTCC+TGG | + | chr3.4:25255391-25255410 | None:intergenic | 50.0% | |
| GAGAGGCAGTTAGTGAAGCA+AGG | - | chr3.4:25256492-25256511 | MS.gene77877:CDS | 50.0% | |
| GAGGCAGTTAGTGAAGCAAG+GGG | - | chr3.4:25256494-25256513 | MS.gene77877:CDS | 50.0% | |
| GTTGTAGGGTCTGTGACATC+AGG | - | chr3.4:25254599-25254618 | MS.gene77877:intron | 50.0% | |
| TGCCTCTCAACCATCTTCTC+CGG | + | chr3.4:25256480-25256499 | None:intergenic | 50.0% | |
| TTCCGGAGAAGATGGTTGAG+AGG | - | chr3.4:25256475-25256494 | MS.gene77877:CDS | 50.0% | |
| CCGCGTCTCTTGAGGTTACA+AGG | - | chr3.4:25255641-25255660 | MS.gene77877:intron | 55.0% | |
| GCTAGAAATGCTGCAGCTGC+TGG | - | chr3.4:25254467-25254486 | MS.gene77877:CDS | 55.0% | |
| GTTAGGTATGGTGCATGCGG+AGG | - | chr3.4:25255853-25255872 | MS.gene77877:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 25254293 | 25256725 | 25254293 | ID=MS.gene77877 |
| chr3.4 | mRNA | 25254293 | 25256725 | 25254293 | ID=MS.gene77877.t1;Parent=MS.gene77877 |
| chr3.4 | exon | 25256351 | 25256725 | 25256351 | ID=MS.gene77877.t1.exon1;Parent=MS.gene77877.t1 |
| chr3.4 | CDS | 25256351 | 25256725 | 25256351 | ID=cds.MS.gene77877.t1;Parent=MS.gene77877.t1 |
| chr3.4 | exon | 25255701 | 25255892 | 25255701 | ID=MS.gene77877.t1.exon2;Parent=MS.gene77877.t1 |
| chr3.4 | CDS | 25255701 | 25255892 | 25255701 | ID=cds.MS.gene77877.t1;Parent=MS.gene77877.t1 |
| chr3.4 | exon | 25255486 | 25255626 | 25255486 | ID=MS.gene77877.t1.exon3;Parent=MS.gene77877.t1 |
| chr3.4 | CDS | 25255486 | 25255626 | 25255486 | ID=cds.MS.gene77877.t1;Parent=MS.gene77877.t1 |
| chr3.4 | exon | 25254697 | 25254897 | 25254697 | ID=MS.gene77877.t1.exon4;Parent=MS.gene77877.t1 |
| chr3.4 | CDS | 25254697 | 25254897 | 25254697 | ID=cds.MS.gene77877.t1;Parent=MS.gene77877.t1 |
| chr3.4 | exon | 25254293 | 25254571 | 25254293 | ID=MS.gene77877.t1.exon5;Parent=MS.gene77877.t1 |
| chr3.4 | CDS | 25254293 | 25254571 | 25254293 | ID=cds.MS.gene77877.t1;Parent=MS.gene77877.t1 |
| Gene Sequence |
| Protein sequence |
