Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054944.t1 | XP_003613143.1 | 87.3 | 314 | 40 | 0 | 2 | 315 | 69 | 382 | 5.60E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054944.t1 | Q9FVQ0 | 52.6 | 308 | 146 | 0 | 4 | 311 | 70 | 377 | 8.1e-94 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054944.t1 | G7JYZ1 | 87.3 | 314 | 40 | 0 | 2 | 315 | 69 | 382 | 4.1e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23537 | MS.gene054944 | PPI |
| MS.gene53594 | MS.gene054944 | PPI |
| MS.gene31616 | MS.gene054944 | PPI |
| MS.gene51580 | MS.gene054944 | PPI |
| MS.gene015953 | MS.gene054944 | PPI |
| MS.gene61665 | MS.gene054944 | PPI |
| MS.gene94810 | MS.gene054944 | PPI |
| MS.gene014685 | MS.gene054944 | PPI |
| MS.gene038029 | MS.gene054944 | PPI |
| MS.gene60245 | MS.gene054944 | PPI |
| MS.gene64265 | MS.gene054944 | PPI |
| MS.gene061851 | MS.gene054944 | PPI |
| MS.gene09884 | MS.gene054944 | PPI |
| MS.gene031178 | MS.gene054944 | PPI |
| MS.gene021474 | MS.gene054944 | PPI |
| MS.gene32792 | MS.gene054944 | PPI |
| MS.gene064951 | MS.gene054944 | PPI |
| MS.gene56048 | MS.gene054944 | PPI |
| MS.gene40340 | MS.gene054944 | PPI |
| MS.gene054944 | MS.gene064951 | PPI |
| MS.gene24021 | MS.gene054944 | PPI |
| MS.gene059136 | MS.gene054944 | PPI |
| MS.gene059027 | MS.gene054944 | PPI |
| MS.gene018590 | MS.gene054944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054944.t1 | MTR_5g033260 | 87.261 | 314 | 40 | 0 | 2 | 315 | 69 | 382 | 0.0 | 560 |
| MS.gene054944.t1 | MTR_8g432640 | 82.166 | 314 | 56 | 0 | 2 | 315 | 69 | 382 | 0.0 | 543 |
| MS.gene054944.t1 | MTR_7g107690 | 47.896 | 309 | 161 | 0 | 4 | 312 | 73 | 381 | 2.28e-109 | 323 |
| MS.gene054944.t1 | MTR_3g088925 | 48.387 | 310 | 158 | 2 | 4 | 312 | 72 | 380 | 7.87e-106 | 315 |
| MS.gene054944.t1 | MTR_4g051642 | 50.000 | 310 | 152 | 3 | 4 | 312 | 72 | 379 | 9.79e-105 | 311 |
| MS.gene054944.t1 | MTR_3g088945 | 47.742 | 310 | 160 | 2 | 4 | 312 | 72 | 380 | 3.13e-104 | 310 |
| MS.gene054944.t1 | MTR_7g107710 | 48.397 | 312 | 159 | 2 | 4 | 314 | 71 | 381 | 5.67e-104 | 309 |
| MS.gene054944.t1 | MTR_3g088955 | 47.097 | 310 | 162 | 2 | 4 | 312 | 72 | 380 | 5.97e-102 | 305 |
| MS.gene054944.t1 | MTR_3g109520 | 44.762 | 315 | 168 | 2 | 2 | 311 | 102 | 415 | 3.53e-93 | 283 |
| MS.gene054944.t1 | MTR_1g008380 | 43.269 | 312 | 170 | 3 | 4 | 310 | 107 | 416 | 1.60e-89 | 274 |
| MS.gene054944.t1 | MTR_1g069275 | 46.006 | 313 | 159 | 5 | 4 | 310 | 90 | 398 | 1.10e-88 | 271 |
| MS.gene054944.t1 | MTR_1g046230 | 45.223 | 314 | 163 | 5 | 4 | 310 | 89 | 400 | 2.79e-87 | 268 |
| MS.gene054944.t1 | MTR_1g011630 | 44.194 | 310 | 162 | 5 | 4 | 308 | 81 | 384 | 1.23e-85 | 263 |
| MS.gene054944.t1 | MTR_7g099330 | 45.367 | 313 | 157 | 5 | 4 | 310 | 89 | 393 | 2.30e-85 | 263 |
| MS.gene054944.t1 | MTR_6g086870 | 42.722 | 316 | 170 | 4 | 4 | 310 | 85 | 398 | 3.98e-85 | 262 |
| MS.gene054944.t1 | MTR_7g099160 | 44.918 | 305 | 154 | 5 | 11 | 309 | 217 | 513 | 4.54e-81 | 255 |
| MS.gene054944.t1 | MTR_3g096030 | 86.607 | 112 | 15 | 0 | 4 | 115 | 47 | 158 | 1.85e-65 | 203 |
| MS.gene054944.t1 | MTR_3g096020 | 61.062 | 113 | 6 | 3 | 145 | 256 | 1 | 76 | 4.31e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054944.t1 | AT1G48910 | 52.597 | 308 | 146 | 0 | 4 | 311 | 70 | 377 | 4.54e-118 | 345 |
| MS.gene054944.t1 | AT1G21430 | 48.718 | 312 | 155 | 4 | 2 | 311 | 72 | 380 | 8.12e-99 | 296 |
| MS.gene054944.t1 | AT1G04610 | 46.474 | 312 | 157 | 5 | 4 | 307 | 102 | 411 | 2.42e-94 | 286 |
| MS.gene054944.t1 | AT5G25620 | 45.541 | 314 | 161 | 5 | 4 | 310 | 97 | 407 | 1.01e-91 | 279 |
| MS.gene054944.t1 | AT5G25620 | 45.541 | 314 | 161 | 5 | 4 | 310 | 97 | 407 | 1.36e-91 | 279 |
| MS.gene054944.t1 | AT4G32540 | 43.548 | 310 | 162 | 5 | 4 | 307 | 86 | 388 | 4.91e-86 | 265 |
| MS.gene054944.t1 | AT4G32540 | 43.730 | 311 | 162 | 5 | 4 | 307 | 86 | 390 | 5.55e-86 | 265 |
| MS.gene054944.t1 | AT5G11320 | 43.910 | 312 | 162 | 4 | 2 | 308 | 80 | 383 | 6.36e-86 | 264 |
| MS.gene054944.t1 | AT5G43890 | 44.695 | 311 | 163 | 5 | 4 | 307 | 90 | 398 | 2.32e-85 | 263 |
| MS.gene054944.t1 | AT1G04180 | 43.226 | 310 | 166 | 5 | 4 | 307 | 90 | 395 | 2.69e-84 | 260 |
| MS.gene054944.t1 | AT4G13260 | 42.581 | 310 | 172 | 2 | 4 | 308 | 93 | 401 | 4.16e-84 | 259 |
| MS.gene054944.t1 | AT4G28720 | 42.812 | 320 | 173 | 6 | 4 | 315 | 90 | 407 | 3.41e-83 | 258 |
| MS.gene054944.t1 | AT2G33230 | 43.590 | 312 | 165 | 5 | 4 | 307 | 97 | 405 | 1.67e-80 | 251 |
| MS.gene054944.t1 | AT4G13260 | 41.724 | 290 | 163 | 2 | 23 | 307 | 9 | 297 | 7.01e-74 | 230 |
| MS.gene054944.t1 | AT5G11320 | 43.295 | 261 | 136 | 3 | 2 | 257 | 80 | 333 | 1.02e-67 | 216 |
| MS.gene054944.t1 | AT4G13260 | 44.037 | 218 | 117 | 1 | 4 | 216 | 93 | 310 | 1.74e-60 | 196 |
Find 74 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTATGATCTCTATAAT+TGG | 0.192502 | 3.1:-76489699 | MS.gene054944:CDS |
| CGGTATTTATCGTCCCAAAT+TGG | 0.220274 | 3.1:-76488045 | MS.gene054944:CDS |
| AATTATGCAGATTAAGAGTT+TGG | 0.267840 | 3.1:+76487225 | None:intergenic |
| GTATTGAAGGAATTGGTCTT+TGG | 0.306079 | 3.1:+76490032 | None:intergenic |
| TGCTTATGATCTCTATAATT+GGG | 0.311048 | 3.1:-76489698 | MS.gene054944:CDS |
| ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 3.1:-76489752 | MS.gene054944:CDS |
| GAGTTGTAAAGGTCCCAATT+TGG | 0.331158 | 3.1:+76488031 | None:intergenic |
| AGTTGTAAAGGTCCCAATTT+GGG | 0.358601 | 3.1:+76488032 | None:intergenic |
| TGTCTATGTATTGAAGGAAT+TGG | 0.360875 | 3.1:+76490025 | None:intergenic |
| CACTCAAAATACTACAAATC+TGG | 0.376434 | 3.1:-76489781 | MS.gene054944:CDS |
| TTATCCAGTCCAGGCACATT+AGG | 0.388569 | 3.1:+76489823 | None:intergenic |
| AATTAAAGAGGGATCTATAA+AGG | 0.391104 | 3.1:-76487958 | MS.gene054944:intron |
| GTCTATTGTCGTTCGAAGTC+CGG | 0.391484 | 3.1:-76489665 | MS.gene054944:intron |
| GGTATTTATCGTCCCAAATT+GGG | 0.412423 | 3.1:-76488044 | MS.gene054944:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 3.1:+76490019 | None:intergenic |
| GGTCTTTGGATAGGTAGGTT+GGG | 0.424128 | 3.1:+76490046 | None:intergenic |
| CATAGCTCATGGGTGGCTTA+AGG | 0.432624 | 3.1:-76487572 | MS.gene054944:intron |
| GGGACGATAAATACCGTACT+TGG | 0.439663 | 3.1:+76488052 | None:intergenic |
| AGGAACATTGGAAGTTTATG+AGG | 0.446242 | 3.1:-76489893 | MS.gene054944:CDS |
| ACTAGCAAGGAGAGGCTTGT+GGG | 0.449924 | 3.1:-76487288 | MS.gene054944:CDS |
| TGGTCTTTGGATAGGTAGGT+TGG | 0.458799 | 3.1:+76490045 | None:intergenic |
| GCGAATGGTGAATTATTTGC+CGG | 0.460895 | 3.1:-76488132 | MS.gene054944:CDS |
| TATTCCTAATGTGCCTGGAC+TGG | 0.461163 | 3.1:-76489827 | MS.gene054944:CDS |
| GAATTGGTCTTTGGATAGGT+AGG | 0.465992 | 3.1:+76490041 | None:intergenic |
| ATGATGAAGTTAGAGACAAA+TGG | 0.467665 | 3.1:-76489942 | MS.gene054944:CDS |
| AAATATGCTCTCAATGAGAA+AGG | 0.471673 | 3.1:-76487371 | MS.gene054944:CDS |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 3.1:-76489832 | MS.gene054944:CDS |
| AAGCTTCTTGTGGTCGCCAC+CGG | 0.491235 | 3.1:-76489868 | MS.gene054944:CDS |
| ATAGCATCCACAACATCAAC+CGG | 0.492553 | 3.1:+76488113 | None:intergenic |
| GATGCAATCGTATTCGCGAC+TGG | 0.499555 | 3.1:-76487604 | MS.gene054944:CDS |
| AGGCTTGTGGGGAGTCAAGA+TGG | 0.506541 | 3.1:-76487276 | MS.gene054944:CDS |
| GAAGGAATTGGTCTTTGGAT+AGG | 0.509607 | 3.1:+76490037 | None:intergenic |
| AAGTCTGCAGTTATTGATGT+TGG | 0.511414 | 3.1:-76487993 | MS.gene054944:CDS |
| AATATGCTCTCAATGAGAAA+GGG | 0.511763 | 3.1:-76487370 | MS.gene054944:CDS |
| AAAATGCTTACCCGAGCCAT+TGG | 0.511789 | 3.1:-76487340 | MS.gene054944:CDS |
| CCTGGACTGGATAACTTTGA+AGG | 0.516577 | 3.1:-76489814 | MS.gene054944:CDS |
| TTATTTGCCGGTTGATGTTG+TGG | 0.517505 | 3.1:-76488120 | MS.gene054944:CDS |
| GTCACGTTCTTGAGTTGTAA+AGG | 0.520118 | 3.1:+76488020 | None:intergenic |
| TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 3.1:-76489758 | MS.gene054944:CDS |
| TCAATTCTCGTAATATCTGA+AGG | 0.531023 | 3.1:+76487670 | None:intergenic |
| GAAACAAAGAACACTAAAGA+AGG | 0.532498 | 3.1:-76489913 | MS.gene054944:CDS |
| TTACAACTCAAGAACGTGAC+AGG | 0.534326 | 3.1:-76488017 | MS.gene054944:CDS |
| TGCTTACCCGAGCCATTGGA+AGG | 0.540363 | 3.1:-76487336 | MS.gene054944:CDS |
| TACGGTGATCTGTCCAAGTA+CGG | 0.541244 | 3.1:-76488065 | MS.gene054944:CDS |
| CCTTCAAAGTTATCCAGTCC+AGG | 0.541905 | 3.1:+76489814 | None:intergenic |
| GAACACTAAAGAAGGAACAT+TGG | 0.544778 | 3.1:-76489905 | MS.gene054944:CDS |
| GACTAGCAAGGAGAGGCTTG+TGG | 0.559365 | 3.1:-76487289 | MS.gene054944:CDS |
| GCTTATGATCTCTATAATTG+GGG | 0.559964 | 3.1:-76489697 | MS.gene054944:CDS |
| CTTACCCGAGCCATTGGAAG+GGG | 0.560574 | 3.1:-76487334 | MS.gene054944:CDS |
| GGACTTCGAACGACAATAGA+CGG | 0.563490 | 3.1:+76489667 | None:intergenic |
| GATCATGGATTATACTGCGC+AGG | 0.573202 | 3.1:-76487311 | MS.gene054944:CDS |
| TTATCTAAAAGAAACATGAA+TGG | 0.574587 | 3.1:-76490518 | None:intergenic |
| GGATACAAAAGCATAGCTCA+TGG | 0.579034 | 3.1:-76487583 | MS.gene054944:CDS |
| TGGGAGTGGTAACTCAGGAA+TGG | 0.579719 | 3.1:-76489725 | MS.gene054944:CDS |
| AATAGAGAAATGATTCGTCA+AGG | 0.580272 | 3.1:-76488158 | MS.gene054944:CDS |
| TTATGAGGCAAAGCTTCTTG+TGG | 0.587741 | 3.1:-76489878 | MS.gene054944:CDS |
| CTAGCAAGGAGAGGCTTGTG+GGG | 0.590569 | 3.1:-76487287 | MS.gene054944:CDS |
| ATAGAGAAATGATTCGTCAA+GGG | 0.595594 | 3.1:-76488157 | MS.gene054944:CDS |
| GCTTACCCGAGCCATTGGAA+GGG | 0.611153 | 3.1:-76487335 | MS.gene054944:CDS |
| GATACAAAAGCATAGCTCAT+GGG | 0.613114 | 3.1:-76487582 | MS.gene054944:CDS |
| GTAGTTGGGAGTGGTAACTC+AGG | 0.620564 | 3.1:-76489730 | MS.gene054944:CDS |
| TATACTGCGCAGGACTAGCA+AGG | 0.623691 | 3.1:-76487301 | MS.gene054944:CDS |
| AGTTGTATTTGGAAACAACA+TGG | 0.629375 | 3.1:-76487638 | MS.gene054944:CDS |
| ACTGGATAACTTTGAAGGAG+AGG | 0.632240 | 3.1:-76489809 | MS.gene054944:CDS |
| GACTTCGAACGACAATAGAC+GGG | 0.636542 | 3.1:+76489668 | None:intergenic |
| GGATAACTTTGAAGGAGAGG+TGG | 0.646286 | 3.1:-76489806 | MS.gene054944:CDS |
| ATGAAGTTAGAGACAAATGG+AGG | 0.649410 | 3.1:-76489939 | MS.gene054944:CDS |
| TGCGCAGGACTAGCAAGGAG+AGG | 0.654870 | 3.1:-76487296 | MS.gene054944:CDS |
| GGATGCAGAGTCAATTGCAG+AGG | 0.658304 | 3.1:-76487255 | MS.gene054944:CDS |
| GCCACCGGTGAAAATAGTGA+AGG | 0.667655 | 3.1:-76489853 | MS.gene054944:CDS |
| GATTCGTCAAGGGATGCGAA+TGG | 0.671019 | 3.1:-76488147 | MS.gene054944:CDS |
| ACAAAAGCATAGCTCATGGG+TGG | 0.672473 | 3.1:-76487579 | MS.gene054944:CDS |
| TTACCCGAGCCATTGGAAGG+GGG | 0.715554 | 3.1:-76487333 | MS.gene054944:CDS |
| TCAACTGTGCGACAATAACG+AGG | 0.715629 | 3.1:+76489976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3.1:76488788-76488807 | MS.gene054944:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3.1:76488787-76488806 | MS.gene054944:intron | 10.0% |
| !!! | TATTTTATGTATTTTTTCAA+AGG | - | chr3.1:76490327-76490346 | MS.gene054944:intron | 10.0% |
| !! | AAAATGTATGTATATTGTAA+TGG | + | chr3.1:76490226-76490245 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr3.1:76488752-76488771 | None:intergenic | 15.0% |
| !! | AATGAGACATTAAATAAATA+AGG | - | chr3.1:76489003-76489022 | MS.gene054944:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3.1:76488789-76488808 | MS.gene054944:intron | 15.0% |
| !! | TAGAGAATTATAATGAATAT+GGG | + | chr3.1:76490293-76490312 | None:intergenic | 15.0% |
| !! | TTAGAGAATTATAATGAATA+TGG | + | chr3.1:76490294-76490313 | None:intergenic | 15.0% |
| !!! | TAACTATCTTTAAGATTTTA+AGG | - | chr3.1:76489264-76489283 | MS.gene054944:intron | 15.0% |
| !!! | TAATGAAAATATGTATTTTG+TGG | - | chr3.1:76489502-76489521 | MS.gene054944:intron | 15.0% |
| !! | AAAATCAACCAAAATATTAC+GGG | - | chr3.1:76487293-76487312 | MS.gene054944:CDS | 20.0% |
| !! | AGAGAATTATAATGAATATG+GGG | + | chr3.1:76490292-76490311 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3.1:76489162-76489181 | MS.gene054944:intron | 20.0% |
| !! | ATACGTCATAATTAAGATAA+AGG | - | chr3.1:76490178-76490197 | MS.gene054944:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr3.1:76488753-76488772 | None:intergenic | 20.0% |
| !! | CTTCTCTCAAAAAAAAAAAA+AGG | + | chr3.1:76488663-76488682 | None:intergenic | 20.0% |
| !! | GAAAATCAACCAAAATATTA+CGG | - | chr3.1:76487292-76487311 | MS.gene054944:CDS | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3.1:76489163-76489182 | MS.gene054944:intron | 20.0% |
| !! | TACGTCATAATTAAGATAAA+GGG | - | chr3.1:76490179-76490198 | MS.gene054944:intron | 20.0% |
| !! | TAGTAGTGTTATATTGTATT+GGG | - | chr3.1:76489130-76489149 | MS.gene054944:intron | 20.0% |
| !! | TATTAATACCATGTTTATGT+AGG | - | chr3.1:76489803-76489822 | MS.gene054944:CDS | 20.0% |
| !! | TCATACAAAAACAAACATAT+TGG | - | chr3.1:76487416-76487435 | MS.gene054944:intron | 20.0% |
| !! | TTCAAAATATGAATCAAAAG+AGG | - | chr3.1:76487968-76487987 | MS.gene054944:CDS | 20.0% |
| !!! | ATTACCCTTATTTATTAATG+TGG | - | chr3.1:76488962-76488981 | MS.gene054944:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+TGG | - | chr3.1:76489199-76489218 | MS.gene054944:intron | 20.0% |
| !!! | TCAATTGAATGGTTTTAATA+TGG | + | chr3.1:76489341-76489360 | None:intergenic | 20.0% |
| ! | AACCATCGAAAAAATTAAAG+AGG | - | chr3.1:76489756-76489775 | MS.gene054944:CDS | 25.0% |
| ! | AATGTGACATTAAAAAGGAA+CGG | - | chr3.1:76489104-76489123 | MS.gene054944:intron | 25.0% |
| ! | AATTAAAGAGGGATCTATAA+AGG | - | chr3.1:76489768-76489787 | MS.gene054944:CDS | 25.0% |
| ! | AATTATGCAGATTAAGAGTT+TGG | + | chr3.1:76490504-76490523 | None:intergenic | 25.0% |
| ! | ACCATCGAAAAAATTAAAGA+GGG | - | chr3.1:76489757-76489776 | MS.gene054944:CDS | 25.0% |
| ! | ATATGTAGTAATTCACTGAA+TGG | - | chr3.1:76487270-76487289 | MS.gene054944:CDS | 25.0% |
| ! | ATGTAAAGTGACACTTAAAT+AGG | + | chr3.1:76488908-76488927 | None:intergenic | 25.0% |
| ! | ATTAATCACCTACATAAACA+TGG | + | chr3.1:76489814-76489833 | None:intergenic | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | + | chr3.1:76487710-76487729 | None:intergenic | 25.0% |
| ! | CTCTCCACATTAATAAATAA+GGG | + | chr3.1:76488969-76488988 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAAGTTGTATT+TGG | - | chr3.1:76490077-76490096 | MS.gene054944:intron | 25.0% |
| ! | GCTATGTTAACTATCTTTAA+GGG | - | chr3.1:76488561-76488580 | MS.gene054944:intron | 25.0% |
| ! | GTAGTAGTGTTATATTGTAT+TGG | - | chr3.1:76489129-76489148 | MS.gene054944:intron | 25.0% |
| ! | GTCAAAATGTGACATTAAAA+AGG | - | chr3.1:76489099-76489118 | MS.gene054944:intron | 25.0% |
| ! | TAAATTCTACAACTTCTTGT+TGG | - | chr3.1:76487377-76487396 | MS.gene054944:CDS | 25.0% |
| ! | TCTCTCCACATTAATAAATA+AGG | + | chr3.1:76488970-76488989 | None:intergenic | 25.0% |
| ! | TGCTATGTTAACTATCTTTA+AGG | - | chr3.1:76488560-76488579 | MS.gene054944:intron | 25.0% |
| ! | TGCTTATGATCTCTATAATT+GGG | - | chr3.1:76488028-76488047 | MS.gene054944:CDS | 25.0% |
| ! | TTATGGATATCTATCTAGAT+AGG | + | chr3.1:76488510-76488529 | None:intergenic | 25.0% |
| ! | TTGCTTATGATCTCTATAAT+TGG | - | chr3.1:76488027-76488046 | MS.gene054944:CDS | 25.0% |
| ! | TTGTATACCTAAAAAGAGTA+AGG | - | chr3.1:76488148-76488167 | MS.gene054944:CDS | 25.0% |
| ! | TTTATAGTTGAAAATGACAG+TGG | - | chr3.1:76489379-76489398 | MS.gene054944:intron | 25.0% |
| !! | ATATGAATCAAAAGAGGTTT+TGG | - | chr3.1:76487974-76487993 | MS.gene054944:CDS | 25.0% |
| !! | TAACTATCTTTAAGGGTTTA+GGG | - | chr3.1:76488568-76488587 | MS.gene054944:intron | 25.0% |
| !! | TATTGTTGTTGTAGTAATCT+AGG | + | chr3.1:76487454-76487473 | None:intergenic | 25.0% |
| !! | TTAACTATCTTTAAGGGTTT+AGG | - | chr3.1:76488567-76488586 | MS.gene054944:intron | 25.0% |
| !! | TTTGTATCCTTACTCTTTTT+AGG | + | chr3.1:76488158-76488177 | None:intergenic | 25.0% |
| !! | TTTTCGGCAAAACTAAAATA+CGG | - | chr3.1:76489643-76489662 | MS.gene054944:intron | 25.0% |
| !! | TTTTGCATGTGTTTATTCAT+TGG | - | chr3.1:76490258-76490277 | MS.gene054944:intron | 25.0% |
| !!! | AACGAGGTTTTATGTTAAAA+TGG | + | chr3.1:76487737-76487756 | None:intergenic | 25.0% |
| AAAGCTGAATTCCATTATGT+TGG | - | chr3.1:76489407-76489426 | MS.gene054944:intron | 30.0% | |
| AAATATGCTCTCAATGAGAA+AGG | - | chr3.1:76490355-76490374 | MS.gene054944:intron | 30.0% | |
| AACTCACAACACTTTCATTA+AGG | - | chr3.1:76489990-76490009 | MS.gene054944:CDS | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr3.1:76488867-76488886 | None:intergenic | 30.0% | |
| AATAGAGAAATGATTCGTCA+AGG | - | chr3.1:76489568-76489587 | MS.gene054944:intron | 30.0% | |
| AATATGCTCTCAATGAGAAA+GGG | - | chr3.1:76490356-76490375 | MS.gene054944:intron | 30.0% | |
| AGAAAATTGGTCAGTTATTC+TGG | - | chr3.1:76489212-76489231 | MS.gene054944:intron | 30.0% | |
| AGTTGTATTTGGAAACAACA+TGG | - | chr3.1:76490088-76490107 | MS.gene054944:intron | 30.0% | |
| ATAGAGAAATGATTCGTCAA+GGG | - | chr3.1:76489569-76489588 | MS.gene054944:intron | 30.0% | |
| ATGATGAAGTTAGAGACAAA+TGG | - | chr3.1:76487784-76487803 | MS.gene054944:intron | 30.0% | |
| CACTCAAAATACTACAAATC+TGG | - | chr3.1:76487945-76487964 | MS.gene054944:intron | 30.0% | |
| CATTGATATGTCGAAAGTTA+TGG | + | chr3.1:76488527-76488546 | None:intergenic | 30.0% | |
| GAAAATTGGTCAGTTATTCT+GGG | - | chr3.1:76489213-76489232 | MS.gene054944:intron | 30.0% | |
| GAAACAAAGAACACTAAAGA+AGG | - | chr3.1:76487813-76487832 | MS.gene054944:intron | 30.0% | |
| GAGTTAGAAATGTTCTTTAC+CGG | + | chr3.1:76488083-76488102 | None:intergenic | 30.0% | |
| GCTTATGATCTCTATAATTG+GGG | - | chr3.1:76488029-76488048 | MS.gene054944:CDS | 30.0% | |
| GTCATAATTAAGATAAAGGG+AGG | - | chr3.1:76490182-76490201 | MS.gene054944:intron | 30.0% | |
| TCAATTCTCGTAATATCTGA+AGG | + | chr3.1:76490059-76490078 | None:intergenic | 30.0% | |
| TCCAAAAGTGACACTTAAAA+AGG | + | chr3.1:76488872-76488891 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3.1:76488796-76488815 | MS.gene054944:intron | 30.0% | |
| TGTATGACTCCAATATGTTT+AGG | + | chr3.1:76487403-76487422 | None:intergenic | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | + | chr3.1:76487704-76487723 | None:intergenic | 30.0% | |
| TTATAGATGTCTAGCTAGAT+AGG | + | chr3.1:76488697-76488716 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr3.1:76488748-76488767 | None:intergenic | 30.0% | |
| ! | ATAACCTTCACTATTTTCAC+CGG | + | chr3.1:76487880-76487899 | None:intergenic | 30.0% |
| ! | ATAATGGAATTCAGCTTTAC+AGG | + | chr3.1:76489405-76489424 | None:intergenic | 30.0% |
| ! | CATTTTTGCCCGTAATATTT+TGG | + | chr3.1:76487304-76487323 | None:intergenic | 30.0% |
| ! | GCAACATTTATTGATTGTCT+TGG | - | chr3.1:76489064-76489083 | MS.gene054944:intron | 30.0% |
| ! | TACTGCACTTTTCAATTGAA+TGG | + | chr3.1:76489352-76489371 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3.1:76489176-76489195 | MS.gene054944:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3.1:76489177-76489196 | MS.gene054944:intron | 30.0% |
| !!! | ATTTTAAGGTGCTTCTAACA+TGG | - | chr3.1:76489278-76489297 | MS.gene054944:intron | 30.0% |
| !!! | GGATGCTATCATTACTTTTT+CGG | - | chr3.1:76489627-76489646 | MS.gene054944:intron | 30.0% |
| !!! | TCCCTCTTTAATTTTTTCGA+TGG | + | chr3.1:76489761-76489780 | None:intergenic | 30.0% |
| !!! | TCCTTTTTAAGTGTCACTTT+TGG | - | chr3.1:76488868-76488887 | MS.gene054944:intron | 30.0% |
| AAGATTGTTGTGCTTCTCTT+TGG | - | chr3.1:76487574-76487593 | MS.gene054944:CDS | 35.0% | |
| AAGTCTGCAGTTATTGATGT+TGG | - | chr3.1:76489733-76489752 | MS.gene054944:CDS | 35.0% | |
| ACAGTTGTAATTGTAGGTTC+TGG | - | chr3.1:76487485-76487504 | MS.gene054944:intron | 35.0% | |
| AGAACCTACAATTACAACTG+TGG | + | chr3.1:76487486-76487505 | None:intergenic | 35.0% | |
| AGGAACATTGGAAGTTTATG+AGG | - | chr3.1:76487833-76487852 | MS.gene054944:intron | 35.0% | |
| AGTTGTAAAGGTCCCAATTT+GGG | + | chr3.1:76489697-76489716 | None:intergenic | 35.0% | |
| ATGAAGTTAGAGACAAATGG+AGG | - | chr3.1:76487787-76487806 | MS.gene054944:intron | 35.0% | |
| CTCTATTGAAGACATGAAAC+TGG | + | chr3.1:76489555-76489574 | None:intergenic | 35.0% | |
| GAACACTAAAGAAGGAACAT+TGG | - | chr3.1:76487821-76487840 | MS.gene054944:intron | 35.0% | |
| GAATCCACAGTTGTAATTGT+AGG | - | chr3.1:76487479-76487498 | MS.gene054944:intron | 35.0% | |
| GGTATTTATCGTCCCAAATT+GGG | - | chr3.1:76489682-76489701 | MS.gene054944:CDS | 35.0% | |
| GTATGAGTGTGACATAACTT+TGG | - | chr3.1:76490012-76490031 | MS.gene054944:CDS | 35.0% | |
| GTGTGACATAACTTTGGATT+TGG | - | chr3.1:76490018-76490037 | MS.gene054944:CDS | 35.0% | |
| TTCGAGTATGATATGAGAGA+TGG | + | chr3.1:76487550-76487569 | None:intergenic | 35.0% | |
| ! | GATACAAAAGCATAGCTCAT+GGG | - | chr3.1:76490144-76490163 | MS.gene054944:intron | 35.0% |
| ! | TCTTGTTGGCCTAAACATAT+TGG | - | chr3.1:76487391-76487410 | MS.gene054944:intron | 35.0% |
| !! | CAAAAGAGGTTTTGGTAGTT+GGG | - | chr3.1:76487982-76488001 | MS.gene054944:CDS | 35.0% |
| !! | GTATTGAAGGAATTGGTCTT+TGG | + | chr3.1:76487697-76487716 | None:intergenic | 35.0% |
| !! | TCAAAAGAGGTTTTGGTAGT+TGG | - | chr3.1:76487981-76488000 | MS.gene054944:CDS | 35.0% |
| ACTTTGGATTTGGATGTCAC+AGG | - | chr3.1:76490028-76490047 | MS.gene054944:CDS | 40.0% | |
| ATAGCATCCACAACATCAAC+CGG | + | chr3.1:76489616-76489635 | None:intergenic | 40.0% | |
| ATTGTTGTGCTTCTCTTTGG+AGG | - | chr3.1:76487577-76487596 | MS.gene054944:CDS | 40.0% | |
| CAACTATCGAGCCAACATAA+TGG | + | chr3.1:76489421-76489440 | None:intergenic | 40.0% | |
| CGGTATTTATCGTCCCAAAT+TGG | - | chr3.1:76489681-76489700 | MS.gene054944:CDS | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr3.1:76488863-76488882 | None:intergenic | 40.0% | |
| GAGTTGTAAAGGTCCCAATT+TGG | + | chr3.1:76489698-76489717 | None:intergenic | 40.0% | |
| GCGAATGGTGAATTATTTGC+CGG | - | chr3.1:76489594-76489613 | MS.gene054944:intron | 40.0% | |
| GCTTCTAACATGGAAAAGTG+CGG | - | chr3.1:76489288-76489307 | MS.gene054944:intron | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | - | chr3.1:76487894-76487913 | MS.gene054944:intron | 40.0% | |
| GTGACATTAAAAAGGAACGG+AGG | - | chr3.1:76489107-76489126 | MS.gene054944:intron | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr3.1:76488864-76488883 | None:intergenic | 40.0% | |
| TGATCGTTTAAACCTCCACT+TGG | - | chr3.1:76487611-76487630 | MS.gene054944:CDS | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr3.1:76488745-76488764 | None:intergenic | 40.0% | |
| TTACAACTCAAGAACGTGAC+AGG | - | chr3.1:76489709-76489728 | MS.gene054944:CDS | 40.0% | |
| TTATGAGGCAAAGCTTCTTG+TGG | - | chr3.1:76487848-76487867 | MS.gene054944:intron | 40.0% | |
| ! | ACTGGATAACTTTGAAGGAG+AGG | - | chr3.1:76487917-76487936 | MS.gene054944:intron | 40.0% |
| ! | ATTGGTCAGTTATTCTGGGA+CGG | - | chr3.1:76489217-76489236 | MS.gene054944:intron | 40.0% |
| ! | GGATACAAAAGCATAGCTCA+TGG | - | chr3.1:76490143-76490162 | MS.gene054944:intron | 40.0% |
| ! | GTCACGTTCTTGAGTTGTAA+AGG | + | chr3.1:76489709-76489728 | None:intergenic | 40.0% |
| ! | TTATTTGCCGGTTGATGTTG+TGG | - | chr3.1:76489606-76489625 | MS.gene054944:intron | 40.0% |
| !! | ACGGAGGGAGTACAATATTT+TGG | - | chr3.1:76489236-76489255 | MS.gene054944:intron | 40.0% |
| !! | GAAGGAATTGGTCTTTGGAT+AGG | + | chr3.1:76487692-76487711 | None:intergenic | 40.0% |
| !! | GAATTGGTCTTTGGATAGGT+AGG | + | chr3.1:76487688-76487707 | None:intergenic | 40.0% |
| !! | GAGAGATGGAGTTTTGTGTT+AGG | + | chr3.1:76487536-76487555 | None:intergenic | 40.0% |
| AAAACTCACTAGCCAAGTGG+AGG | + | chr3.1:76487626-76487645 | None:intergenic | 45.0% | |
| AAAATGCTTACCCGAGCCAT+TGG | - | chr3.1:76490386-76490405 | MS.gene054944:intron | 45.0% | |
| AGCAAAACTCACTAGCCAAG+TGG | + | chr3.1:76487629-76487648 | None:intergenic | 45.0% | |
| CCTTCAAAGTTATCCAGTCC+AGG | + | chr3.1:76487915-76487934 | None:intergenic | 45.0% | |
| GACTTCGAACGACAATAGAC+GGG | + | chr3.1:76488061-76488080 | None:intergenic | 45.0% | |
| GGACTTCGAACGACAATAGA+CGG | + | chr3.1:76488062-76488081 | None:intergenic | 45.0% | |
| GGGACGATAAATACCGTACT+TGG | + | chr3.1:76489677-76489696 | None:intergenic | 45.0% | |
| GGTCTTTGGATAGGTAGGTT+GGG | + | chr3.1:76487683-76487702 | None:intergenic | 45.0% | |
| GTCTATTGTCGTTCGAAGTC+CGG | - | chr3.1:76488061-76488080 | MS.gene054944:CDS | 45.0% | |
| TACGGTGATCTGTCCAAGTA+CGG | - | chr3.1:76489661-76489680 | MS.gene054944:intron | 45.0% | |
| TATTCCTAATGTGCCTGGAC+TGG | - | chr3.1:76487899-76487918 | MS.gene054944:intron | 45.0% | |
| TCAACTGTGCGACAATAACG+AGG | + | chr3.1:76487753-76487772 | None:intergenic | 45.0% | |
| TGGTCTTTGGATAGGTAGGT+TGG | + | chr3.1:76487684-76487703 | None:intergenic | 45.0% | |
| TGTTAGGCAAGCTGATTGCT+AGG | + | chr3.1:76487520-76487539 | None:intergenic | 45.0% | |
| TTATCCAGTCCAGGCACATT+AGG | + | chr3.1:76487906-76487925 | None:intergenic | 45.0% | |
| ! | ACAAAAGCATAGCTCATGGG+TGG | - | chr3.1:76490147-76490166 | MS.gene054944:intron | 45.0% |
| ! | ACCTTCACTATTTTCACCGG+TGG | + | chr3.1:76487877-76487896 | None:intergenic | 45.0% |
| ! | ATTGTAGGTTCTGGTCCTTC+TGG | - | chr3.1:76487494-76487513 | MS.gene054944:intron | 45.0% |
| ! | CCTGGACTGGATAACTTTGA+AGG | - | chr3.1:76487912-76487931 | MS.gene054944:intron | 45.0% |
| ! | GATCATGGATTATACTGCGC+AGG | - | chr3.1:76490415-76490434 | MS.gene054944:intron | 45.0% |
| ! | GGATAACTTTGAAGGAGAGG+TGG | - | chr3.1:76487920-76487939 | MS.gene054944:intron | 45.0% |
| ! | GGTTTAGGGTGCTTCTAACA+TGG | - | chr3.1:76488582-76488601 | MS.gene054944:intron | 45.0% |
| !!! | TGGCTCGGGTAAGCATTTTT+TGG | + | chr3.1:76490385-76490404 | None:intergenic | 45.0% |
| !! | TTTATTTAAAAATTTAATGA+CGG | - | chr3.1:76488248-76488267 | MS.gene054944:intron | 5.0% |
| AAGCTGATTGCTAGGCCAGA+AGG | + | chr3.1:76487512-76487531 | None:intergenic | 50.0% | |
| ACTAGCAAGGAGAGGCTTGT+GGG | - | chr3.1:76490438-76490457 | MS.gene054944:intron | 50.0% | |
| ATCCATGATCCCCCTTCCAA+TGG | + | chr3.1:76490405-76490424 | None:intergenic | 50.0% | |
| CATAGCTCATGGGTGGCTTA+AGG | - | chr3.1:76490154-76490173 | MS.gene054944:intron | 50.0% | |
| GATGCAATCGTATTCGCGAC+TGG | - | chr3.1:76490122-76490141 | MS.gene054944:intron | 50.0% | |
| GATTCGTCAAGGGATGCGAA+TGG | - | chr3.1:76489579-76489598 | MS.gene054944:intron | 50.0% | |
| GCCACCGGTGAAAATAGTGA+AGG | - | chr3.1:76487873-76487892 | MS.gene054944:intron | 50.0% | |
| GGATGCAGAGTCAATTGCAG+AGG | - | chr3.1:76490471-76490490 | MS.gene054944:intron | 50.0% | |
| GTAGTTGGGAGTGGTAACTC+AGG | - | chr3.1:76487996-76488015 | MS.gene054944:CDS | 50.0% | |
| TGGGAGTGGTAACTCAGGAA+TGG | - | chr3.1:76488001-76488020 | MS.gene054944:CDS | 50.0% | |
| ! | TATACTGCGCAGGACTAGCA+AGG | - | chr3.1:76490425-76490444 | MS.gene054944:intron | 50.0% |
| !! | GAGGTTTTGGTAGTTGGGAG+TGG | - | chr3.1:76487987-76488006 | MS.gene054944:CDS | 50.0% |
| !! | GTCAGTTATTCTGGGACGGA+GGG | - | chr3.1:76489221-76489240 | MS.gene054944:intron | 50.0% |
| AAGCTTCTTGTGGTCGCCAC+CGG | - | chr3.1:76487858-76487877 | MS.gene054944:intron | 55.0% | |
| AGCCATTGGAAGGGGGATCA+TGG | - | chr3.1:76490400-76490419 | MS.gene054944:intron | 55.0% | |
| AGGCTTGTGGGGAGTCAAGA+TGG | - | chr3.1:76490450-76490469 | MS.gene054944:intron | 55.0% | |
| CTAGCAAGGAGAGGCTTGTG+GGG | - | chr3.1:76490439-76490458 | MS.gene054944:intron | 55.0% | |
| CTTACCCGAGCCATTGGAAG+GGG | - | chr3.1:76490392-76490411 | MS.gene054944:intron | 55.0% | |
| GACTAGCAAGGAGAGGCTTG+TGG | - | chr3.1:76490437-76490456 | MS.gene054944:intron | 55.0% | |
| GCTTACCCGAGCCATTGGAA+GGG | - | chr3.1:76490391-76490410 | MS.gene054944:intron | 55.0% | |
| TGATCCCCCTTCCAATGGCT+CGG | + | chr3.1:76490400-76490419 | None:intergenic | 55.0% | |
| TGCTTACCCGAGCCATTGGA+AGG | - | chr3.1:76490390-76490409 | MS.gene054944:intron | 55.0% | |
| TTACCCGAGCCATTGGAAGG+GGG | - | chr3.1:76490393-76490412 | MS.gene054944:intron | 55.0% | |
| ! | GATAGGTAGGTTGGGCCTGA+GGG | + | chr3.1:76487675-76487694 | None:intergenic | 55.0% |
| !! | GGTCAGTTATTCTGGGACGG+AGG | - | chr3.1:76489220-76489239 | MS.gene054944:intron | 55.0% |
| GATCCCCCTTCCAATGGCTC+GGG | + | chr3.1:76490399-76490418 | None:intergenic | 60.0% | |
| TGAGGGTGGGTGAGGCATGA+GGG | + | chr3.1:76487658-76487677 | None:intergenic | 60.0% | |
| ! | GGATAGGTAGGTTGGGCCTG+AGG | + | chr3.1:76487676-76487695 | None:intergenic | 60.0% |
| ! | TGCGCAGGACTAGCAAGGAG+AGG | - | chr3.1:76490430-76490449 | MS.gene054944:intron | 60.0% |
| CTCATGCCTCACCCACCCTC+AGG | - | chr3.1:76487657-76487676 | MS.gene054944:CDS | 65.0% | |
| CTGAGGGTGGGTGAGGCATG+AGG | + | chr3.1:76487659-76487678 | None:intergenic | 65.0% | |
| GAGGGTGGGTGAGGCATGAG+GGG | + | chr3.1:76487657-76487676 | None:intergenic | 65.0% | |
| ! | AGGTAGGTTGGGCCTGAGGG+TGG | + | chr3.1:76487672-76487691 | None:intergenic | 65.0% |
| ! | GGTAGGTTGGGCCTGAGGGT+GGG | + | chr3.1:76487671-76487690 | None:intergenic | 65.0% |
| GTTGGGCCTGAGGGTGGGTG+AGG | + | chr3.1:76487666-76487685 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 76487223 | 76490525 | 76487223 | ID=MS.gene054944 |
| chr3.1 | mRNA | 76487223 | 76490525 | 76487223 | ID=MS.gene054944.t1;Parent=MS.gene054944 |
| chr3.1 | exon | 76490519 | 76490525 | 76490519 | ID=MS.gene054944.t1.exon1;Parent=MS.gene054944.t1 |
| chr3.1 | CDS | 76490519 | 76490525 | 76490519 | ID=cds.MS.gene054944.t1;Parent=MS.gene054944.t1 |
| chr3.1 | exon | 76489666 | 76490069 | 76489666 | ID=MS.gene054944.t1.exon2;Parent=MS.gene054944.t1 |
| chr3.1 | CDS | 76489666 | 76490069 | 76489666 | ID=cds.MS.gene054944.t1;Parent=MS.gene054944.t1 |
| chr3.1 | exon | 76487959 | 76488192 | 76487959 | ID=MS.gene054944.t1.exon3;Parent=MS.gene054944.t1 |
| chr3.1 | CDS | 76487959 | 76488192 | 76487959 | ID=cds.MS.gene054944.t1;Parent=MS.gene054944.t1 |
| chr3.1 | exon | 76487573 | 76487698 | 76487573 | ID=MS.gene054944.t1.exon4;Parent=MS.gene054944.t1 |
| chr3.1 | CDS | 76487573 | 76487698 | 76487573 | ID=cds.MS.gene054944.t1;Parent=MS.gene054944.t1 |
| chr3.1 | exon | 76487223 | 76487399 | 76487223 | ID=MS.gene054944.t1.exon5;Parent=MS.gene054944.t1 |
| chr3.1 | CDS | 76487223 | 76487399 | 76487223 | ID=cds.MS.gene054944.t1;Parent=MS.gene054944.t1 |
| Gene Sequence |
| Protein sequence |
