AlfalfaGEDB | MS.gene47049

M. sativa cultivar XinJiangDaYe / MS.gene47049

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0030234 GO:0030414 GO:0061134 GO:0061135 GO:0098772
PFAM: PF16845.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47049.t1	XP_003617185.1	94.2	104	6	0	1	104	1	104	3.00E-44	187.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47049.t1	Q06445	65.0	100	32	1	1	100	1	97	5.7e-28	124.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47049.t1	G7KCS3	94.2	104	6	0	1	104	1	104	2.1e-44	187.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene47049	0.884487	1.84E-71	-1.69E-46
MS.gene049182	MS.gene47049	0.812204	4.77E-51	-1.69E-46
MS.gene049259	MS.gene47049	0.811878	5.62E-51	-1.69E-46
MS.gene049281	MS.gene47049	0.804173	2.45E-49	-1.69E-46
MS.gene050381	MS.gene47049	0.803292	3.74E-49	-1.69E-46
MS.gene050883	MS.gene47049	0.82844	8.98E-55	-1.69E-46
MS.gene051364	MS.gene47049	0.820876	5.44E-53	-1.69E-46
MS.gene051366	MS.gene47049	0.819522	1.11E-52	-1.69E-46
MS.gene051367	MS.gene47049	0.846408	2.21E-59	-1.69E-46
MS.gene051410	MS.gene47049	0.816685	4.87E-52	-1.69E-46
MS.gene051959	MS.gene47049	0.819452	1.15E-52	-1.69E-46
MS.gene051960	MS.gene47049	0.827834	1.26E-54	-1.69E-46
MS.gene052053	MS.gene47049	0.846729	1.81E-59	-1.69E-46
MS.gene052089	MS.gene47049	0.822301	2.55E-53	-1.69E-46
MS.gene052560	MS.gene47049	0.844177	8.89E-59	-1.69E-46
MS.gene052579	MS.gene47049	0.807065	6.06E-50	-1.69E-46
MS.gene053083	MS.gene47049	0.812301	4.54E-51	-1.69E-46
MS.gene053420	MS.gene47049	0.80509	1.58E-49	-1.69E-46
MS.gene053826	MS.gene47049	0.832751	7.91E-56	-1.69E-46
MS.gene054056	MS.gene47049	0.834022	3.81E-56	-1.69E-46
MS.gene054057	MS.gene47049	0.808599	2.86E-50	-1.69E-46
MS.gene054616	MS.gene47049	0.810316	1.22E-50	-1.69E-46
MS.gene055150	MS.gene47049	0.801793	7.61E-49	-1.69E-46
MS.gene055154	MS.gene47049	0.800234	1.59E-48	-1.69E-46
MS.gene055549	MS.gene47049	0.841834	3.74E-58	-1.69E-46
MS.gene055550	MS.gene47049	0.841222	5.42E-58	-1.69E-46
MS.gene055634	MS.gene47049	-0.825985	3.48E-54	-1.69E-46
MS.gene055942	MS.gene47049	0.80463	1.97E-49	-1.69E-46
MS.gene056185	MS.gene47049	0.812392	4.34E-51	-1.69E-46
MS.gene056311	MS.gene47049	0.840697	7.44E-58	-1.69E-46
MS.gene056530	MS.gene47049	0.861848	7.69E-64	-1.69E-46
MS.gene056761	MS.gene47049	0.828047	1.12E-54	-1.69E-46
MS.gene057001	MS.gene47049	0.812856	3.43E-51	-1.69E-46
MS.gene057014	MS.gene47049	0.811717	6.09E-51	-1.69E-46
MS.gene057148	MS.gene47049	-0.817082	3.97E-52	-1.69E-46
MS.gene057499	MS.gene47049	0.800207	1.61E-48	-1.69E-46
MS.gene058111	MS.gene47049	0.824088	9.75E-54	-1.69E-46
MS.gene058171	MS.gene47049	0.808136	3.59E-50	-1.69E-46
MS.gene058175	MS.gene47049	0.805432	1.34E-49	-1.69E-46
MS.gene058349	MS.gene47049	0.817295	3.55E-52	-1.69E-46
MS.gene058493	MS.gene47049	0.863718	2.04E-64	-1.69E-46
MS.gene058494	MS.gene47049	0.852226	5.31E-61	-1.69E-46
MS.gene058496	MS.gene47049	0.827331	1.66E-54	-1.69E-46
MS.gene058628	MS.gene47049	0.840933	6.45E-58	-1.69E-46
MS.gene058629	MS.gene47049	0.812456	4.20E-51	-1.69E-46
MS.gene058630	MS.gene47049	0.822964	1.79E-53	-1.69E-46
MS.gene05884	MS.gene47049	0.872644	2.71E-67	-1.69E-46
MS.gene059052	MS.gene47049	0.801896	7.25E-49	-1.69E-46
MS.gene059436	MS.gene47049	0.801596	8.36E-49	-1.69E-46
MS.gene059514	MS.gene47049	0.813041	3.13E-51	-1.69E-46
MS.gene059589	MS.gene47049	0.809081	2.26E-50	-1.69E-46
MS.gene060595	MS.gene47049	0.858175	9.86E-63	-1.69E-46
MS.gene060703	MS.gene47049	-0.813531	2.44E-51	-1.69E-46
MS.gene060929	MS.gene47049	0.810972	8.84E-51	-1.69E-46
MS.gene060975	MS.gene47049	0.809452	1.88E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47049.t1	MTR_5g088770	94.231	104	6	0	1	104	1	104	5.38e-67	196
MS.gene47049.t1	MTR_3g043750	62.000	100	35	1	1	100	1	97	8.00e-39	125
MS.gene47049.t1	MTR_8g041410	50.476	105	50	2	1	104	38	141	2.15e-31	110
MS.gene47049.t1	MTR_3g451210	46.000	100	51	1	4	103	31	127	1.84e-21	82.8
MS.gene47049.t1	MTR_3g452280	46.000	100	51	1	4	103	31	127	1.84e-21	82.8
MS.gene47049.t1	MTR_4g133540	37.647	85	52	1	5	89	29	112	1.50e-14	64.3
MS.gene47049.t1	MTR_0526s0020	42.466	73	42	0	19	91	28	100	9.51e-12	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47049.t1	AT3G12490	54.808	104	44	1	1	104	1	101	2.30e-35	118
MS.gene47049.t1	AT3G12490	54.808	104	44	1	1	104	34	134	2.55e-34	118
MS.gene47049.t1	AT2G40880	51.163	86	42	0	4	89	35	120	1.98e-27	97.4
MS.gene47049.t1	AT5G05110	51.064	94	45	1	4	96	45	138	8.20e-27	99.0
MS.gene47049.t1	AT5G12140	47.126	87	46	0	4	90	10	96	3.13e-25	91.3
MS.gene47049.t1	AT4G16500	44.444	72	39	1	22	92	46	117	1.03e-13	62.4
MS.gene47049.t1	AT4G16500	44.444	72	39	1	22	92	46	117	1.03e-13	62.4

Find 0 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATATATATATATATATAT+AGG	-	38024:21663-21682	MS.gene47049:intron	0.0%
!!	AACTTATTCATAATTTATTA+GGG	+	38024:21629-21648	MS.gene47049:intergenic	10.0%
!!	ATAAATGAACATTAAATAAA+TGG	-	38024:21426-21445	MS.gene47049:intron	10.0%
!!	TAACTTATTCATAATTTATT+AGG	+	38024:21630-21649	MS.gene47049:intergenic	10.0%
!!	TTAATCTAACTAAAATTAAT+TGG	-	38024:22092-22111	MS.gene47049:intron	10.0%
!!	ACTTATTCATAATTTATTAG+GGG	+	38024:21628-21647	MS.gene47049:intergenic	15.0%
!!	ATGAATAAGTTATTAACATT+TGG	-	38024:21638-21657	MS.gene47049:intron	15.0%
!!	TAATCATTAATATAACGATT+TGG	+	38024:21765-21784	MS.gene47049:intergenic	15.0%
!!!	TTCTATACTATATTTTACAA+AGG	+	38024:21152-21171	MS.gene47049:intergenic	15.0%
!!	ACTCAAATGCATATATATTA+TGG	-	38024:21946-21965	MS.gene47049:intron	20.0%
!!	ATATATATAGGCAAATTCTA+TGG	-	38024:21709-21728	MS.gene47049:intron	20.0%
!!	TGAGATTCACTTATTAAAAA+GGG	-	38024:21370-21389	MS.gene47049:intron	20.0%
!!	TTAATGTTTATCTCTTTACA+CGG	+	38024:21340-21359	MS.gene47049:intergenic	20.0%
!	GTGAGATTCACTTATTAAAA+AGG	-	38024:21369-21388	MS.gene47049:intron	25.0%
!!	CTATATTTTACAAAGGAAAC+TGG	+	38024:21145-21164	MS.gene47049:intergenic	25.0%
!!	TATCATTGTATTAGTCTAGA+AGG	-	38024:21520-21539	MS.gene47049:intron	25.0%
!!!	TTCAAAAGTACTAAGAGTTT+CGG	+	38024:21264-21283	MS.gene47049:intergenic	25.0%
	AGGACAGAACAAAATTGAAA+TGG	+	38024:21089-21108	MS.gene47049:intergenic	30.0%
	TCAAGAACACAATATCAAAC+AGG	-	38024:21054-21073	MS.gene47049:CDS	30.0%
	TTATCAAGCAAACAAAACAC+AGG	+	38024:21109-21128	MS.gene47049:intergenic	30.0%
!!	AATATAACGATTTGGTGTAC+CGG	+	38024:21757-21776	MS.gene47049:intergenic	30.0%
!!	TTTTATTTCGTCGAAGCTTT+TGG	+	38024:21856-21875	MS.gene47049:intergenic	30.0%
!!!	CGTTTTTTTTTCCTTTGTAC+CGG	-	38024:21208-21227	MS.gene47049:intron	30.0%
!!!	GTTTTTTTTTCCTTTGTACC+GGG	-	38024:21209-21228	MS.gene47049:intron	30.0%
	AAATCGATCATGAAATGACC+CGG	+	38024:21230-21249	MS.gene47048:intergenic	35.0%
	ACCCAAAAATTTGAGTGTAC+CGG	-	38024:21735-21754	MS.gene47049:intron	35.0%
	GTTAAATGCAAAGAAGCAAG+TGG	-	38024:22197-22216	MS.gene47049:intron	35.0%
!	ACCGGTACACTCAAATTTTT+GGG	+	38024:21739-21758	MS.gene47049:intergenic	35.0%
!	ATCACTTTAGAGACAATGGA+TGG	-	38024:22240-22259	MS.gene47049:intron	35.0%
!	TACCGGTACACTCAAATTTT+TGG	+	38024:21740-21759	MS.gene47049:intergenic	35.0%
!!	CCAAGATTTTAGAGAAGCTA+TGG	-	38024:22286-22305	MS.gene47049:CDS	35.0%
!!	CCATAGCTTCTCTAAAATCT+TGG	+	38024:22289-22308	MS.gene47049:intergenic	35.0%
	CGTGACATAATAATGAGACG+TGG	-	38024:22033-22052	MS.gene47049:intron	40.0%
	CTTGAACAGCAAAGATAGCA+AGG	+	38024:21039-21058	MS.gene47049:intergenic	40.0%
	GAAGCTATGGTTGAACTTCA+AGG	-	38024:22299-22318	MS.gene47049:CDS	40.0%
	GTGAAGGAGTTATATGCAGT+AGG	-	38024:21571-21590	MS.gene47049:intron	40.0%
	TTCTGCGCATTTAAGCATCA+AGG	+	38024:22153-22172	MS.gene47049:intergenic	40.0%
!	ACTTTAGAGACAATGGATGG+TGG	-	38024:22243-22262	MS.gene47049:intron	40.0%
!	CGACATCACTTTAGAGACAA+TGG	-	38024:22236-22255	MS.gene47049:intron	40.0%
!	CTTTAGAGACAATGGATGGT+GGG	-	38024:22244-22263	MS.gene47049:intron	40.0%
!!	AAGGAGTATCCAACTGGTTT+GGG	-	38024:21539-21558	MS.gene47049:intron	40.0%
!!	ATGCAGTTCTAGAGTTTGTG+AGG	-	38024:22172-22191	MS.gene47049:intron	40.0%
!!	CTCTAAAGTGATGTCGTACA+AGG	+	38024:22232-22251	MS.gene47049:intergenic	40.0%
!!	TGCAGTTCTAGAGTTTGTGA+GGG	-	38024:22173-22192	MS.gene47049:intron	40.0%
!!!	CAGAAGGAGCATCGTAATTT+TGG	+	38024:22350-22369	MS.gene47049:intergenic	40.0%
	CATGAAATGACCCGGTACAA+AGG	+	38024:21222-21241	MS.gene47049:intergenic	45.0%
	GCAAAGAAGCAAGTGGTTTC+TGG	-	38024:22204-22223	MS.gene47049:intron	45.0%
	GCTATGGTTGAACTTCAAGG+AGG	-	38024:22302-22321	MS.gene47049:CDS	45.0%
!!	AATGGATGGTGGGAAGCAAA+AGG	-	38024:22254-22273	MS.gene47049:intron	45.0%
!!	GAAGGAGTATCCAACTGGTT+TGG	-	38024:21538-21557	MS.gene47049:intron	45.0%
!!	GTCTAGAAGGAGTATCCAAC+TGG	-	38024:21533-21552	MS.gene47049:intron	45.0%
	GTGTTACAGCCCAAACCAGT+TGG	+	38024:21551-21570	MS.gene47049:intergenic	50.0%
	GTTTGGGCTGTAACACGTGA+AGG	-	38024:21555-21574	MS.gene47049:intron	50.0%
!	GTTGAACTTCAAGGAGGTGC+AGG	-	38024:22308-22327	MS.gene47049:CDS	50.0%
	GACTCTAGGTGGTAGCACTG+AGG	-	38024:20979-20998	MS.gene47049:CDS	55.0%
!	TCTAGGTGGTAGCACTGAGG+TGG	-	38024:20982-21001	MS.gene47049:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
38024	gene	20974	22383	20974	ID=MS.gene47049
38024	mRNA	20974	22383	20974	ID=MS.gene47049.t1;Parent=MS.gene47049
38024	exon	22282	22383	22282	ID=MS.gene47049.t1.exon1;Parent=MS.gene47049.t1
38024	CDS	22282	22383	22282	ID=cds.MS.gene47049.t1;Parent=MS.gene47049.t1
38024	exon	20974	21186	20974	ID=MS.gene47049.t1.exon2;Parent=MS.gene47049.t1
38024	CDS	20974	21186	20974	ID=cds.MS.gene47049.t1;Parent=MS.gene47049.t1

Gene Sequence

>MS.gene47049

ATGGCGACTCTAGGTGGTAGCACTGAGGTGGAATATACACAAAACAGTGTTGAGATAGATAACCTTGCTATCTTTGCTGTTCAAGAACACAATATCAAACAGGTTTTTTTTACCATTTCAATTTTGTTCTGTCCTGTGTTTTGTTTGCTTGATAATGTTTTTGTTTGACCAGTTTCCTTTGTAAAATATAGTATAGAATAAAAGTGATTTTTACAACTTTAATCTCATTTTGTACGTTTTTTTTTCCTTTGTACCGGGTCATTTCATGATCGATTTTTAAACATGATCCGAAACTCTTAGTACTTTTGAAGTTCTAAATTAGATGTTAGTCTGAATTTGCTTAATTTATCTATTCTTCATTTACCGTGTAAAGAGATAAACATTAACGATAGATTGTGAGATTCACTTATTAAAAAGGGTTTATTAATCTTTGATTTGTGTTTATCTTTGTTATAAATGAACATTAAATAAATGGTAAATTTAGAGCAAATTCAGACACACTAATATAAATTTAATTTAATTTTTTTTATGTATAAGTAAATCGTCTATCATTGTATTAGTCTAGAAGGAGTATCCAACTGGTTTGGGCTGTAACACGTGAAGGAGTTATATGCAGTAGGTGCATGTTCAATTTAGCTATTAACATTTTCTCCCCTAATAAATTATGAATAAGTTATTAACATTTGGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGCAAATTCTATGGTACACCCAAAAATTTGAGTGTACCGGTACACCAAATCGTTATATTAATGATTAAATGAGTTGTTTTTTTTAAGAAAAAGAATTTTTTTTCATTAACAATTATAATAATTAAATCTTATTTACCAAAAGCTTCGACGAAATAAAATTTACTTTTATATATATATATATATATATTGATAAAAGACAAATCACATTTTTTAAACTTATTTATTCAAACTCAAATGCATATATATTATGGCTAATTATATTTTATTAACTTTAAGAAATAGATATGTATAGAGATATTTTAAGAACAAATACAACGTGACATAATAATGAGACGTGGTTAGATATACGTGCAAATTACAAATACTAATGAAATTTAATCTAACTAAAATTAATTGGATATTATATTTCTCTCTATTTTGACTTGATTGAATCCTTGATGCTTAAATGCGCAGAATGCAGTTCTAGAGTTTGTGAGGGTGTTAAATGCAAAGAAGCAAGTGGTTTCTGGCACCTTGTACGACATCACTTTAGAGACAATGGATGGTGGGAAGCAAAAGGTGTATGAAGCCAAGATTTTAGAGAAGCTATGGTTGAACTTCAAGGAGGTGCAGGAATTCAATCTCATTAGCCAAAATTACGATGCTCCTTCTGTATCTAGCACTTAG

Protein sequence

>MS.gene47049.t1

MATLGGSTEVEYTQNSVEIDNLAIFAVQEHNIKQNAVLEFVRVLNAKKQVVSGTLYDITLETMDGGKQKVYEAKILEKLWLNFKEVQEFNLISQNYDAPSVSST