Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55101.t1 | XP_003595094.2 | 95.6 | 1009 | 41 | 3 | 1 | 1006 | 1 | 1009 | 0.00E+00 | 1867 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55101.t1 | Q9SZR3 | 42.4 | 1083 | 471 | 36 | 1 | 1000 | 1 | 1013 | 3.4e-178 | 627.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55101.t1 | G7IGA7 | 95.6 | 1009 | 41 | 3 | 1 | 1006 | 1 | 1009 | 0.0e+00 | 1867.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene55101 | 0.811205 | 7.86E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene55101 | 0.832964 | 7.00E-56 | -1.69E-46 |
| MS.gene049418 | MS.gene55101 | 0.829587 | 4.73E-55 | -1.69E-46 |
| MS.gene049672 | MS.gene55101 | 0.803859 | 2.85E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene55101 | 0.848865 | 4.67E-60 | -1.69E-46 |
| MS.gene049807 | MS.gene55101 | 0.850331 | 1.82E-60 | -1.69E-46 |
| MS.gene050258 | MS.gene55101 | 0.816374 | 5.71E-52 | -1.69E-46 |
| MS.gene051018 | MS.gene55101 | 0.845235 | 4.61E-59 | -1.69E-46 |
| MS.gene051478 | MS.gene55101 | 0.827255 | 1.73E-54 | -1.69E-46 |
| MS.gene051648 | MS.gene55101 | 0.859042 | 5.44E-63 | -1.69E-46 |
| MS.gene051660 | MS.gene55101 | 0.816164 | 6.37E-52 | -1.69E-46 |
| MS.gene051664 | MS.gene55101 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene051719 | MS.gene55101 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene55101 | 0.829192 | 5.91E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene55101 | 0.810184 | 1.31E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene55101 | 0.815763 | 7.83E-52 | -1.69E-46 |
| MS.gene052150 | MS.gene55101 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene052151 | MS.gene55101 | 0.826902 | 2.10E-54 | -1.69E-46 |
| MS.gene052155 | MS.gene55101 | -0.837138 | 6.20E-57 | -1.69E-46 |
| MS.gene052514 | MS.gene55101 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene55101 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene55101 | 0.860038 | 2.73E-63 | -1.69E-46 |
| MS.gene053536 | MS.gene55101 | 0.891981 | 2.42E-74 | -1.69E-46 |
| MS.gene053538 | MS.gene55101 | 0.891541 | 3.62E-74 | -1.69E-46 |
| MS.gene053540 | MS.gene55101 | 0.830044 | 3.67E-55 | -1.69E-46 |
| MS.gene053945 | MS.gene55101 | 0.81948 | 1.14E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene55101 | 0.817395 | 3.37E-52 | -1.69E-46 |
| MS.gene054557 | MS.gene55101 | 0.808338 | 3.25E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene55101 | 0.84912 | 3.96E-60 | -1.69E-46 |
| MS.gene055465 | MS.gene55101 | 0.814446 | 1.53E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene55101 | 0.803215 | 3.88E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene55101 | 0.876984 | 9.04E-69 | -1.69E-46 |
| MS.gene055580 | MS.gene55101 | -0.817343 | 3.46E-52 | -1.69E-46 |
| MS.gene055653 | MS.gene55101 | 0.810383 | 1.18E-50 | -1.69E-46 |
| MS.gene055764 | MS.gene55101 | 0.818718 | 1.69E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene55101 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene55101 | 0.85497 | 8.63E-62 | -1.69E-46 |
| MS.gene056228 | MS.gene55101 | 0.81199 | 5.31E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene55101 | 0.816534 | 5.26E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene55101 | 0.852311 | 5.02E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene55101 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene057132 | MS.gene55101 | 0.834193 | 3.45E-56 | -1.69E-46 |
| MS.gene058149 | MS.gene55101 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene058210 | MS.gene55101 | 0.806144 | 9.49E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene55101 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene55101 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene55101 | 0.840006 | 1.13E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene55101 | 0.883245 | 5.28E-71 | -1.69E-46 |
| MS.gene059424 | MS.gene55101 | 0.885919 | 5.37E-72 | -1.69E-46 |
| MS.gene05971 | MS.gene55101 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene55101 | 0.833933 | 4.01E-56 | -1.69E-46 |
| MS.gene060519 | MS.gene55101 | 0.823029 | 1.73E-53 | -1.69E-46 |
| MS.gene060962 | MS.gene55101 | 0.847163 | 1.38E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55101.t1 | MTR_2g038200 | 96.928 | 1009 | 28 | 3 | 1 | 1006 | 1 | 1009 | 0.0 | 2016 |
| MS.gene55101.t1 | MTR_4g127290 | 52.276 | 637 | 214 | 20 | 397 | 1006 | 247 | 820 | 1.04e-180 | 546 |
| MS.gene55101.t1 | MTR_4g127290 | 62.097 | 248 | 54 | 8 | 1 | 212 | 1 | 244 | 4.53e-67 | 241 |
| MS.gene55101.t1 | MTR_4g129230 | 30.112 | 1076 | 548 | 41 | 1 | 964 | 1 | 984 | 1.44e-108 | 362 |
| MS.gene55101.t1 | MTR_1g090640 | 40.613 | 522 | 251 | 16 | 1 | 495 | 1 | 490 | 2.43e-103 | 343 |
| MS.gene55101.t1 | MTR_1g057150 | 40.927 | 518 | 234 | 16 | 1 | 491 | 1 | 473 | 9.97e-100 | 332 |
| MS.gene55101.t1 | MTR_5g071060 | 25.944 | 1006 | 524 | 38 | 1 | 863 | 1 | 928 | 8.06e-43 | 170 |
| MS.gene55101.t1 | MTR_5g071060 | 26.265 | 1028 | 526 | 41 | 1 | 863 | 1 | 961 | 1.37e-42 | 169 |
| MS.gene55101.t1 | MTR_3g464150 | 30.144 | 554 | 283 | 23 | 1 | 498 | 1 | 506 | 4.47e-34 | 142 |
| MS.gene55101.t1 | MTR_3g070850 | 32.464 | 422 | 214 | 14 | 1 | 397 | 1 | 376 | 1.52e-33 | 140 |
| MS.gene55101.t1 | MTR_4g109450 | 30.078 | 256 | 144 | 9 | 26 | 280 | 20 | 241 | 1.81e-17 | 88.2 |
| MS.gene55101.t1 | MTR_4g109450 | 30.078 | 256 | 144 | 9 | 26 | 280 | 20 | 241 | 3.35e-17 | 87.4 |
| MS.gene55101.t1 | MTR_7g028970 | 28.063 | 253 | 147 | 8 | 26 | 277 | 20 | 238 | 9.81e-16 | 82.8 |
| MS.gene55101.t1 | MTR_1384s0010 | 52.632 | 76 | 30 | 3 | 52 | 124 | 32 | 104 | 1.70e-14 | 70.9 |
| MS.gene55101.t1 | MTR_1183s0010 | 46.392 | 97 | 46 | 3 | 86 | 179 | 16 | 109 | 3.32e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55101.t1 | AT4G29920 | 42.318 | 1087 | 469 | 39 | 1 | 1000 | 1 | 1016 | 0.0 | 663 |
| MS.gene55101.t1 | AT4G29920 | 42.134 | 1087 | 468 | 39 | 1 | 1000 | 1 | 1013 | 0.0 | 657 |
| MS.gene55101.t1 | AT5G57130 | 41.547 | 1112 | 456 | 47 | 1 | 1003 | 1 | 1027 | 0.0 | 630 |
| MS.gene55101.t1 | AT3G52490 | 40.883 | 521 | 235 | 15 | 1 | 500 | 1 | 469 | 5.22e-105 | 347 |
| MS.gene55101.t1 | AT5G57710 | 33.455 | 825 | 420 | 30 | 1 | 758 | 1 | 763 | 2.75e-100 | 338 |
| MS.gene55101.t1 | AT4G30350 | 38.333 | 540 | 255 | 17 | 1 | 498 | 1 | 504 | 1.02e-78 | 277 |
| MS.gene55101.t1 | AT2G29970 | 26.755 | 1054 | 588 | 43 | 1 | 962 | 1 | 962 | 3.18e-54 | 205 |
| MS.gene55101.t1 | AT1G07200 | 27.179 | 872 | 453 | 37 | 1 | 779 | 1 | 783 | 7.07e-46 | 179 |
| MS.gene55101.t1 | AT2G40130 | 31.655 | 417 | 232 | 16 | 1 | 397 | 1 | 384 | 1.69e-40 | 162 |
| MS.gene55101.t1 | AT2G40130 | 31.655 | 417 | 232 | 16 | 1 | 397 | 1 | 384 | 2.14e-40 | 162 |
| MS.gene55101.t1 | AT1G74310 | 26.953 | 256 | 152 | 9 | 26 | 280 | 20 | 241 | 6.97e-15 | 80.1 |
| MS.gene55101.t1 | AT1G74310 | 27.692 | 260 | 145 | 11 | 26 | 280 | 20 | 241 | 1.07e-14 | 79.3 |
Find 153 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTGTTAACTACTTAA+TGG | 0.116030 | 2.2:-49353596 | MS.gene55101:CDS |
| ATAATTCATCATACCCTTAT+TGG | 0.138198 | 2.2:-49355040 | MS.gene55101:CDS |
| AAAATGGGATAGTGGGTTTA+TGG | 0.183846 | 2.2:-49353641 | MS.gene55101:CDS |
| CTTGTCAAATCACTTGAAAT+TGG | 0.210696 | 2.2:+49353994 | None:intergenic |
| CTACCTTGGTTTGGCCAATA+AGG | 0.218068 | 2.2:+49355026 | None:intergenic |
| CAATGAAAAGTTTGTTGTTT+TGG | 0.224683 | 2.2:-49354442 | MS.gene55101:CDS |
| GATATTGAACTTGGTGTATC+TGG | 0.233918 | 2.2:+49354993 | None:intergenic |
| AGCACACTCCTTTGATGATT+TGG | 0.236617 | 2.2:+49354632 | None:intergenic |
| CCATTAAGTAGTTAACAATT+TGG | 0.247388 | 2.2:+49353596 | None:intergenic |
| TAAGGGTATGATGAATTATA+AGG | 0.279485 | 2.2:+49355044 | None:intergenic |
| ATTGCAAAGTTTGGAACTTT+AGG | 0.282514 | 2.2:-49354360 | MS.gene55101:CDS |
| ACAAGTTTAGAGAGGGTTAA+TGG | 0.285676 | 2.2:-49353718 | MS.gene55101:CDS |
| AGAAGAATCTGTTGCCTTCA+TGG | 0.287597 | 2.2:-49355550 | MS.gene55101:CDS |
| CTTGGAATTGGATTCTCTTA+AGG | 0.294768 | 2.2:-49354838 | MS.gene55101:CDS |
| CCTGTTCCATCTGGTGGACT+TGG | 0.302111 | 2.2:-49356969 | MS.gene55101:CDS |
| TATAGTTTATACACTTTGTT+GGG | 0.306813 | 2.2:-49353680 | MS.gene55101:CDS |
| TTGGAATTGGATTCTCTTAA+GGG | 0.308860 | 2.2:-49354837 | MS.gene55101:CDS |
| AAAATCTTCTGAGTCTAATA+AGG | 0.315204 | 2.2:-49357498 | MS.gene55101:CDS |
| GATTATGTTGTGGAAGAAAT+AGG | 0.322451 | 2.2:-49357122 | MS.gene55101:CDS |
| GTCATTTCCTTGTTCTTAGC+TGG | 0.323821 | 2.2:+49353895 | None:intergenic |
| AGTAACAACAACCTTGGAAT+TGG | 0.329743 | 2.2:-49354850 | MS.gene55101:CDS |
| TCATCAAAATCACCTTGTTT+AGG | 0.334064 | 2.2:-49354201 | MS.gene55101:CDS |
| GGAACAAGAATGGTAAGATT+TGG | 0.338899 | 2.2:-49357079 | MS.gene55101:CDS |
| GTTAGTGATTATGTTGCATT+AGG | 0.341264 | 2.2:-49357227 | MS.gene55101:CDS |
| ATGTTTGAGAAATGGCTAAA+AGG | 0.352149 | 2.2:-49353751 | MS.gene55101:CDS |
| GATAAGGTGATAGAGGAAAT+TGG | 0.356476 | 2.2:-49353802 | MS.gene55101:CDS |
| CTAACAACATGTTTGAGAAA+TGG | 0.359340 | 2.2:-49353759 | MS.gene55101:CDS |
| AGTAGAGTTATGAGAGAAGC+TGG | 0.362568 | 2.2:-49357695 | MS.gene55101:CDS |
| GTGGTTGCTGCTGCTGTTGT+TGG | 0.363016 | 2.2:+49357780 | None:intergenic |
| AAATGGGATAGTGGGTTTAT+GGG | 0.369377 | 2.2:-49353640 | MS.gene55101:CDS |
| GGCAACAGATTCTTCTGGTC+TGG | 0.371234 | 2.2:+49355557 | None:intergenic |
| TACCTTGGTTTGGCCAATAA+GGG | 0.372431 | 2.2:+49355027 | None:intergenic |
| TTGGTTGAAAATGCTGATTT+TGG | 0.372782 | 2.2:-49354423 | MS.gene55101:CDS |
| GAATTTGAGATTGCAAAGTT+TGG | 0.378824 | 2.2:-49354369 | MS.gene55101:CDS |
| CAAGCTGTTCCTGTTCCATC+TGG | 0.386300 | 2.2:-49356978 | MS.gene55101:CDS |
| ATTCCAAGGTTGTTGTTACT+TGG | 0.386999 | 2.2:+49354853 | None:intergenic |
| GTTTGAACTATAAGCTGGTT+TGG | 0.387155 | 2.2:+49354953 | None:intergenic |
| GCAATTGCAGAATCAGTGTT+TGG | 0.389107 | 2.2:-49354555 | MS.gene55101:CDS |
| CGCGACGGAACCGAGGTATA+AGG | 0.416162 | 2.2:+49354931 | None:intergenic |
| ATCATTGAAGTTGAACTCAA+TGG | 0.420697 | 2.2:+49354893 | None:intergenic |
| TGCAAGGAAATGATTCTGTT+GGG | 0.420831 | 2.2:-49354596 | MS.gene55101:CDS |
| GGAAAGTTGTTTGGTGAAGA+AGG | 0.427180 | 2.2:-49357101 | MS.gene55101:CDS |
| TCATATATACAAAGTGTTGC+AGG | 0.428362 | 2.2:-49354712 | MS.gene55101:CDS |
| AACTGTGATTGTTGCTCCAA+TGG | 0.429174 | 2.2:+49355084 | None:intergenic |
| GTGGTAAAGAGGATAGAAAA+TGG | 0.429390 | 2.2:-49353657 | MS.gene55101:CDS |
| CACCATTGATTCTCAAAAGT+TGG | 0.432170 | 2.2:+49357005 | None:intergenic |
| TAGTTCAATAGCAGAAGCTT+TGG | 0.437063 | 2.2:-49354661 | MS.gene55101:CDS |
| TCTTTAACTGAAGGACTAGT+TGG | 0.442649 | 2.2:-49357401 | MS.gene55101:CDS |
| TGGAGATTTGAAGTGGATAG+TGG | 0.446714 | 2.2:-49357183 | MS.gene55101:CDS |
| GAAGGATTCAGTGATGAAGT+TGG | 0.452059 | 2.2:-49354283 | MS.gene55101:CDS |
| GAGGATAGAAAATGGGATAG+TGG | 0.454439 | 2.2:-49353649 | MS.gene55101:CDS |
| GTATAGTTTATACACTTTGT+TGG | 0.454781 | 2.2:-49353681 | MS.gene55101:CDS |
| CAAATTCTCAATTGAGTCTA+GGG | 0.457600 | 2.2:+49353936 | None:intergenic |
| ATTGGATTCTCTTAAGGGTA+TGG | 0.458957 | 2.2:-49354832 | MS.gene55101:CDS |
| GTGATAGAGGAAATTGGTGT+AGG | 0.463249 | 2.2:-49353796 | MS.gene55101:CDS |
| TTGCAAGGAAATGATTCTGT+TGG | 0.465938 | 2.2:-49354597 | MS.gene55101:CDS |
| TGTACAAGATAAGGTGATAG+AGG | 0.466717 | 2.2:-49353809 | MS.gene55101:CDS |
| AAGATACTACTACCTTGGTT+TGG | 0.466919 | 2.2:+49355017 | None:intergenic |
| ATTGACAATACTGCCACCAT+TGG | 0.472037 | 2.2:+49354317 | None:intergenic |
| AAAATTTAGTGTACAAGATA+AGG | 0.472610 | 2.2:-49353818 | MS.gene55101:CDS |
| ACAAATTCTCAATTGAGTCT+AGG | 0.473106 | 2.2:+49353935 | None:intergenic |
| GATGGTGATAACTCAAAAGT+TGG | 0.473844 | 2.2:+49354231 | None:intergenic |
| TCAAAACCCATCTCCTATGC+TGG | 0.480572 | 2.2:-49355675 | MS.gene55101:CDS |
| AACAGAAGGGTCATCAAGAA+TGG | 0.480936 | 2.2:+49357718 | None:intergenic |
| CTGGCAAGATACTACTACCT+TGG | 0.481842 | 2.2:+49355012 | None:intergenic |
| AAGGGTATGATGAATTATAA+GGG | 0.483177 | 2.2:+49355045 | None:intergenic |
| ATAAGGTTTGAACTATAAGC+TGG | 0.485992 | 2.2:+49354948 | None:intergenic |
| AAAGGTGAAGTAGTAGTAGT+TGG | 0.486118 | 2.2:+49357899 | None:intergenic |
| ATGAAGGCAACAGATTCTTC+TGG | 0.489093 | 2.2:+49355552 | None:intergenic |
| GCTGTTCCTGTTCCATCTGG+TGG | 0.490790 | 2.2:-49356975 | MS.gene55101:CDS |
| CCAAGGATTGAAGAAAATGA+AGG | 0.493746 | 2.2:-49354132 | MS.gene55101:CDS |
| GAGCTCAAGCTCATCAAAGA+AGG | 0.494543 | 2.2:-49357820 | MS.gene55101:CDS |
| GTTTGAGTCTTCATTCATCA+AGG | 0.497632 | 2.2:-49356947 | MS.gene55101:intron |
| AGGATAGAAAATGGGATAGT+GGG | 0.497966 | 2.2:-49353648 | MS.gene55101:CDS |
| CATCAAAGGAGTGTGCTACT+TGG | 0.499695 | 2.2:-49354626 | MS.gene55101:CDS |
| GATTTGACAAGAGAAACATT+AGG | 0.500539 | 2.2:-49353982 | MS.gene55101:CDS |
| ATGTTATAAGAGTGTTGAAA+AGG | 0.504959 | 2.2:-49357253 | MS.gene55101:CDS |
| GAAAGTTGTTTGGTGAAGAA+GGG | 0.506532 | 2.2:-49357100 | MS.gene55101:CDS |
| TCAACTTTAACACTCAAAAG+TGG | 0.507140 | 2.2:+49357761 | None:intergenic |
| CCAAGTCCACCAGATGGAAC+AGG | 0.510866 | 2.2:+49356969 | None:intergenic |
| TCAATCTTGAAGCACTCTCT+AGG | 0.512470 | 2.2:-49358097 | MS.gene55101:CDS |
| TGGTAAAGAGGATAGAAAAT+GGG | 0.517397 | 2.2:-49353656 | MS.gene55101:CDS |
| GTTGGAGCTATATTCTATGT+TGG | 0.520127 | 2.2:-49357203 | MS.gene55101:CDS |
| TTGATTCCAGCATAGGAGAT+GGG | 0.522179 | 2.2:+49355669 | None:intergenic |
| ACTTTGTTGGGGTGGTAAAG+AGG | 0.524368 | 2.2:-49353668 | MS.gene55101:CDS |
| GAGGAAATTGGTGTAGGGTG+TGG | 0.525237 | 2.2:-49353790 | MS.gene55101:CDS |
| AGAAGATGAAGACTATGATG+AGG | 0.527194 | 2.2:-49354028 | MS.gene55101:CDS |
| GATACAGTTTCTTTAACTGA+AGG | 0.527453 | 2.2:-49357410 | MS.gene55101:CDS |
| ATAGTTCAAACCTTATACCT+CGG | 0.527851 | 2.2:-49354941 | MS.gene55101:CDS |
| TTTGATTCCAGCATAGGAGA+TGG | 0.528413 | 2.2:+49355668 | None:intergenic |
| GTTACATGAGGTGTCAAATG+AGG | 0.528631 | 2.2:-49357031 | MS.gene55101:CDS |
| TGGATAGTGGATGATAATGA+TGG | 0.530923 | 2.2:-49357170 | MS.gene55101:CDS |
| TATAAGAGTGTTGAAAAGGA+AGG | 0.531869 | 2.2:-49357249 | MS.gene55101:CDS |
| GCATTTCTTAAAGAAGAAGA+TGG | 0.533196 | 2.2:+49358007 | None:intergenic |
| AAGAAGAACACTGTGATAGT+TGG | 0.533806 | 2.2:-49357434 | MS.gene55101:CDS |
| GAAGATGAAGACTATGATGA+GGG | 0.534488 | 2.2:-49354027 | MS.gene55101:CDS |
| GAAGAAATAGGAAAGTTGTT+TGG | 0.534540 | 2.2:-49357110 | MS.gene55101:CDS |
| CTTGGAAATTCAACATTCAG+TGG | 0.534821 | 2.2:-49354777 | MS.gene55101:CDS |
| GACAAAGATGTTTATGTCAA+GGG | 0.535057 | 2.2:-49353875 | MS.gene55101:CDS |
| GTTTATACACTTTGTTGGGG+TGG | 0.536531 | 2.2:-49353676 | MS.gene55101:CDS |
| GTTTAGAGAGGGTTAATGGT+GGG | 0.538900 | 2.2:-49353714 | MS.gene55101:CDS |
| TGACAAAGATGTTTATGTCA+AGG | 0.539341 | 2.2:-49353876 | MS.gene55101:CDS |
| GATTATGTTGCATTAGGTGT+TGG | 0.539481 | 2.2:-49357221 | MS.gene55101:CDS |
| GGTGAAGAAGGGAACAAGAA+TGG | 0.542309 | 2.2:-49357089 | MS.gene55101:CDS |
| GGTTGATTCCAAATCATCAA+AGG | 0.544126 | 2.2:-49354640 | MS.gene55101:CDS |
| AGCTCAAGCTCATCAAAGAA+GGG | 0.544619 | 2.2:-49357819 | MS.gene55101:CDS |
| CTCATAACTCTACTAACAGA+AGG | 0.547154 | 2.2:+49357704 | None:intergenic |
| TAGCAAATTGTAATGCGCTC+AGG | 0.548048 | 2.2:-49358160 | None:intergenic |
| ATAATGAAAAGATTTGAAAG+AGG | 0.551174 | 2.2:-49357374 | MS.gene55101:CDS |
| GTAAAGACAACTCTTGCACT+TGG | 0.555155 | 2.2:-49354795 | MS.gene55101:CDS |
| TCAACAAAAGATATTGAACT+TGG | 0.555816 | 2.2:+49354984 | None:intergenic |
| AAACCAAGTAACAACAACCT+TGG | 0.559847 | 2.2:-49354856 | MS.gene55101:CDS |
| CTTAAGAGAATCCAATTCCA+AGG | 0.560395 | 2.2:+49354839 | None:intergenic |
| GATTCTCTTAAGGGTATGGA+AGG | 0.560727 | 2.2:-49354828 | MS.gene55101:CDS |
| TTAGAGAGGGTTAATGGTGG+GGG | 0.564593 | 2.2:-49353712 | MS.gene55101:CDS |
| TCTATGTTGGAGATTTGAAG+TGG | 0.565268 | 2.2:-49357190 | MS.gene55101:CDS |
| CTAACTGTTTCACATTGCCA+TGG | 0.568665 | 2.2:+49354681 | None:intergenic |
| TGATAGAGGAAATTGGTGTA+GGG | 0.570147 | 2.2:-49353795 | MS.gene55101:CDS |
| CTTCAAGATTGAAGCAGCCT+CGG | 0.571682 | 2.2:+49358108 | None:intergenic |
| CAAGGATTGAAGAAAATGAA+GGG | 0.573650 | 2.2:-49354131 | MS.gene55101:CDS |
| AGTGTAGCAGCAACGTGAAG+AGG | 0.575327 | 2.2:+49358040 | None:intergenic |
| TAGCACAGAAGCACGTCAGA+AGG | 0.576747 | 2.2:-49355516 | MS.gene55101:intron |
| TTTAGAGAGGGTTAATGGTG+GGG | 0.579670 | 2.2:-49353713 | MS.gene55101:CDS |
| TGTCAATGAAGATCAGAAGA+AGG | 0.579932 | 2.2:-49354301 | MS.gene55101:CDS |
| AAAATATTCATATTGTCCAA+TGG | 0.583934 | 2.2:-49354333 | MS.gene55101:CDS |
| TGAACTTGACTTGTTTAGCA+AGG | 0.587561 | 2.2:-49354163 | MS.gene55101:CDS |
| ATGAGTGCATTAGAAAGAGA+AGG | 0.588534 | 2.2:+49357857 | None:intergenic |
| ATAGTTTATACACTTTGTTG+GGG | 0.593962 | 2.2:-49353679 | MS.gene55101:CDS |
| GGTAAAAGAGTCATTTGAGG+AGG | 0.594837 | 2.2:-49353854 | MS.gene55101:CDS |
| TCAAGAGCTCTACATTGAAG+AGG | 0.598089 | 2.2:+49357953 | None:intergenic |
| ACATGCTGTGGTTGAAGCAA+AGG | 0.603439 | 2.2:+49357881 | None:intergenic |
| TTACATGAGGTGTCAAATGA+GGG | 0.606608 | 2.2:-49357030 | MS.gene55101:CDS |
| AGAGATTGTTGATTATGTTG+TGG | 0.609416 | 2.2:-49357132 | MS.gene55101:CDS |
| AGTTTAGAGAGGGTTAATGG+TGG | 0.613323 | 2.2:-49353715 | MS.gene55101:CDS |
| CTAGGCTTAGCACGTAGAAG+AGG | 0.615440 | 2.2:-49358079 | MS.gene55101:CDS |
| CTCAAACCAAGTCCACCAGA+TGG | 0.615673 | 2.2:+49356963 | None:intergenic |
| GAAAGAGAAGGAACATGCTG+TGG | 0.616344 | 2.2:+49357869 | None:intergenic |
| CTATGAGAGTGAAGCCATGA+AGG | 0.621620 | 2.2:+49355536 | None:intergenic |
| AAGGGTAAAAGAGTCATTTG+AGG | 0.622133 | 2.2:-49353857 | MS.gene55101:CDS |
| GCTCAAGCTCATCAAAGAAG+GGG | 0.624859 | 2.2:-49357818 | MS.gene55101:CDS |
| TCAAAGTCCAGCTAAGAACA+AGG | 0.627959 | 2.2:-49353902 | MS.gene55101:CDS |
| TGTTGTCCGCGACGGAACCG+AGG | 0.638050 | 2.2:+49354924 | None:intergenic |
| AAATGGTTATGACTAAGAGA+AGG | 0.639749 | 2.2:+49357596 | None:intergenic |
| ATATTCATATTGTCCAATGG+TGG | 0.641525 | 2.2:-49354330 | MS.gene55101:CDS |
| TCATAACTCTACTAACAGAA+GGG | 0.643236 | 2.2:+49357705 | None:intergenic |
| TACCCTTATTGGCCAAACCA+AGG | 0.646502 | 2.2:-49355029 | MS.gene55101:CDS |
| GAAGAGGTGTGATTTGTGCA+TGG | 0.654069 | 2.2:+49358056 | None:intergenic |
| TGTTGCAGGAGAATGTTCCA+TGG | 0.660728 | 2.2:-49354698 | MS.gene55101:CDS |
| CTCAAGCTCATCAAAGAAGG+GGG | 0.661271 | 2.2:-49357817 | MS.gene55101:CDS |
| CTAGTTATCAAAGTTACATG+AGG | 0.668274 | 2.2:-49357043 | MS.gene55101:CDS |
| TGCATGATTGTTGTCCGCGA+CGG | 0.675917 | 2.2:+49354916 | None:intergenic |
| CTTATACCTCGGTTCCGTCG+CGG | 0.679756 | 2.2:-49354930 | MS.gene55101:CDS |
| GCAAGAGACACTAACAGCCG+AGG | 0.683106 | 2.2:-49358125 | MS.gene55101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTATTTTAAAATA+TGG | - | chr2.2:49355257-49355276 | MS.gene55101:intron | 0.0% |
| !! | TAAAAAAAATACAAAAAAGA+GGG | - | chr2.2:49355186-49355205 | MS.gene55101:intron | 10.0% |
| !! | AAAACAAAAAACATATATGA+AGG | - | chr2.2:49354897-49354916 | MS.gene55101:CDS | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr2.2:49355646-49355665 | MS.gene55101:CDS | 15.0% |
| !! | CAATAATACACAAAATATAT+CGG | + | chr2.2:49355949-49355968 | None:intergenic | 15.0% |
| !! | CTAAAAAAAATACAAAAAAG+AGG | - | chr2.2:49355185-49355204 | MS.gene55101:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr2.2:49355645-49355664 | MS.gene55101:CDS | 15.0% |
| !!! | AGTGTTTATTTGTTTAATTT+TGG | - | chr2.2:49355982-49356001 | MS.gene55101:intron | 15.0% |
| !!! | TTAACAATTTGGATATTTTT+AGG | + | chr2.2:49358135-49358154 | None:intergenic | 15.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr2.2:49355604-49355623 | MS.gene55101:CDS | 20.0% |
| !! | AAAATATTCATATTGTCCAA+TGG | - | chr2.2:49357406-49357425 | MS.gene55101:CDS | 20.0% |
| !! | AAAATTTAGTGTACAAGATA+AGG | - | chr2.2:49357921-49357940 | MS.gene55101:CDS | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2.2:49355605-49355624 | MS.gene55101:CDS | 20.0% |
| !! | ATAATGAAAAGATTTGAAAG+AGG | - | chr2.2:49354365-49354384 | MS.gene55101:CDS | 20.0% |
| !! | ATCATTAGATCAAAATTAGA+CGG | - | chr2.2:49356447-49356466 | MS.gene55101:intron | 20.0% |
| !! | ATGATTAAAATGTTTCAACT+AGG | + | chr2.2:49356432-49356451 | None:intergenic | 20.0% |
| !! | GTCTTTCATTAGTAAATTTA+TGG | + | chr2.2:49355005-49355024 | None:intergenic | 20.0% |
| !! | TATAGTTTATACACTTTGTT+GGG | - | chr2.2:49358059-49358078 | MS.gene55101:CDS | 20.0% |
| !!! | AACTTATGTGATTTTTTACT+TGG | - | chr2.2:49356512-49356531 | MS.gene55101:intron | 20.0% |
| !!! | AACTTTTCATTGTTTTTCAA+TGG | + | chr2.2:49357289-49357308 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | - | chr2.2:49355581-49355600 | MS.gene55101:CDS | 20.0% |
| !!! | CGATATATTTTGTGTATTAT+TGG | - | chr2.2:49355947-49355966 | MS.gene55101:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2.2:49355715-49355734 | MS.gene55101:intron | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | - | chr2.2:49355580-49355599 | MS.gene55101:CDS | 20.0% |
| !!! | TAAGAATAAATAGTCCTTTT+TGG | - | chr2.2:49354847-49354866 | MS.gene55101:CDS | 20.0% |
| !!! | TGGACAATATGAATATTTTT+TGG | + | chr2.2:49357405-49357424 | None:intergenic | 20.0% |
| !!! | TTTTGTAATTTTGATACAGT+CGG | - | chr2.2:49355136-49355155 | MS.gene55101:CDS | 20.0% |
| ! | AAAATCTTCTGAGTCTAATA+AGG | - | chr2.2:49354241-49354260 | MS.gene55101:CDS | 25.0% |
| ! | AACCATAAGAACTCAAAAAA+TGG | + | chr2.2:49354163-49354182 | None:intergenic | 25.0% |
| ! | ACTAGGATATGATAAATGTA+TGG | + | chr2.2:49356415-49356434 | None:intergenic | 25.0% |
| ! | ATAATTCATCATACCCTTAT+TGG | - | chr2.2:49356699-49356718 | MS.gene55101:intron | 25.0% |
| ! | ATAGTTTATACACTTTGTTG+GGG | - | chr2.2:49358060-49358079 | MS.gene55101:CDS | 25.0% |
| ! | CCAAATTGTTAACTACTTAA+TGG | - | chr2.2:49358143-49358162 | MS.gene55101:CDS | 25.0% |
| ! | CCATTAAGTAGTTAACAATT+TGG | + | chr2.2:49358146-49358165 | None:intergenic | 25.0% |
| ! | GTATAGTTTATACACTTTGT+TGG | - | chr2.2:49358058-49358077 | MS.gene55101:CDS | 25.0% |
| ! | TATTTAAGAGAATGAAACGT+TGG | + | chr2.2:49355815-49355834 | None:intergenic | 25.0% |
| ! | TCAACAAAAGATATTGAACT+TGG | + | chr2.2:49356758-49356777 | None:intergenic | 25.0% |
| ! | TCCTTCTGTTAAAAACAATT+TGG | - | chr2.2:49354076-49354095 | MS.gene55101:CDS | 25.0% |
| ! | TTACTAACAAAACACGTTTA+AGG | - | chr2.2:49355109-49355128 | MS.gene55101:CDS | 25.0% |
| ! | TTTGTATTCTTGTACAAGTT+GGG | + | chr2.2:49356270-49356289 | None:intergenic | 25.0% |
| !! | AAGGGTATGATGAATTATAA+GGG | + | chr2.2:49356697-49356716 | None:intergenic | 25.0% |
| !! | CTTCTTTTATTACCTAAACA+AGG | + | chr2.2:49357553-49357572 | None:intergenic | 25.0% |
| !! | TAAGGGTATGATGAATTATA+AGG | + | chr2.2:49356698-49356717 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr2.2:49355692-49355711 | MS.gene55101:CDS | 25.0% |
| !! | TTGGTGTATGTTTGAAATAA+TGG | - | chr2.2:49356531-49356550 | MS.gene55101:intron | 25.0% |
| !! | TTTTCAAACAAGTTTAGAGA+GGG | - | chr2.2:49358014-49358033 | MS.gene55101:CDS | 25.0% |
| !! | TTTTGTATTCTTGTACAAGT+TGG | + | chr2.2:49356271-49356290 | None:intergenic | 25.0% |
| !!! | AACCATTTTTTGAGTTCTTA+TGG | - | chr2.2:49354158-49354177 | MS.gene55101:CDS | 25.0% |
| !!! | AATTTGTTGCTAAGTATGTA+CGG | - | chr2.2:49355330-49355349 | MS.gene55101:intron | 25.0% |
| !!! | ATCAAAGTTTTTCAGTAACA+AGG | - | chr2.2:49356088-49356107 | MS.gene55101:intron | 25.0% |
| !!! | ATGATAAGTGTTTTTGTGAA+AGG | - | chr2.2:49355305-49355324 | MS.gene55101:intron | 25.0% |
| !!! | ATGTTATAAGAGTGTTGAAA+AGG | - | chr2.2:49354486-49354505 | MS.gene55101:CDS | 25.0% |
| !!! | CAATGAAAAGTTTGTTGTTT+TGG | - | chr2.2:49357297-49357316 | MS.gene55101:CDS | 25.0% |
| !!! | GAACAATTCAATGTTTTTTC+AGG | - | chr2.2:49356559-49356578 | MS.gene55101:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2.2:49355714-49355733 | MS.gene55101:intron | 25.0% |
| !!! | GTGTATTTTGTTACTTAGTT+TGG | - | chr2.2:49354919-49354938 | MS.gene55101:CDS | 25.0% |
| !!! | GTTTAATTTTGGATGCTAAT+TGG | - | chr2.2:49355993-49356012 | MS.gene55101:intron | 25.0% |
| !!! | TCCAAATTGTTTTTAACAGA+AGG | + | chr2.2:49354080-49354099 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr2.2:49355693-49355712 | MS.gene55101:CDS | 25.0% |
| !!! | TTGAGCTTCTTTTTCATAAT+TGG | + | chr2.2:49356153-49356172 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGATGTTCTTTTG+AGG | - | chr2.2:49354276-49354295 | MS.gene55101:CDS | 25.0% |
| !!! | TTTTTCAAACAAGTTTAGAG+AGG | - | chr2.2:49358013-49358032 | MS.gene55101:CDS | 25.0% |
| !!! | TTTTTGAGTTCTTATGGTTA+TGG | - | chr2.2:49354164-49354183 | MS.gene55101:CDS | 25.0% |
| AAAAACTTTGATTCCAGCAT+AGG | + | chr2.2:49356080-49356099 | None:intergenic | 30.0% | |
| AAATGGTTATGACTAAGAGA+AGG | + | chr2.2:49354146-49354165 | None:intergenic | 30.0% | |
| ACAAAAAACCTCAAAACCAT+TGG | - | chr2.2:49356639-49356658 | MS.gene55101:intron | 30.0% | |
| ACAAATTCTCAATTGAGTCT+AGG | + | chr2.2:49357807-49357826 | None:intergenic | 30.0% | |
| ATAAGGTTTGAACTATAAGC+TGG | + | chr2.2:49356794-49356813 | None:intergenic | 30.0% | |
| ATAGTTCAAACCTTATACCT+CGG | - | chr2.2:49356798-49356817 | MS.gene55101:intron | 30.0% | |
| ATATTCATATTGTCCAATGG+TGG | - | chr2.2:49357409-49357428 | MS.gene55101:CDS | 30.0% | |
| ATCATTGAAGTTGAACTCAA+TGG | + | chr2.2:49356849-49356868 | None:intergenic | 30.0% | |
| ATGATTCTGTTGGGAAAAAA+AGG | - | chr2.2:49357152-49357171 | MS.gene55101:CDS | 30.0% | |
| ATGTTTGAGAAATGGCTAAA+AGG | - | chr2.2:49357988-49358007 | MS.gene55101:CDS | 30.0% | |
| CAAAACCTCTTTAGACATTA+CGG | - | chr2.2:49355461-49355480 | MS.gene55101:intron | 30.0% | |
| CAAATTCTCAATTGAGTCTA+GGG | + | chr2.2:49357806-49357825 | None:intergenic | 30.0% | |
| CAAGGATTGAAGAAAATGAA+GGG | - | chr2.2:49357608-49357627 | MS.gene55101:CDS | 30.0% | |
| CTAACAACATGTTTGAGAAA+TGG | - | chr2.2:49357980-49357999 | MS.gene55101:CDS | 30.0% | |
| CTAGTTATCAAAGTTACATG+AGG | - | chr2.2:49354696-49354715 | MS.gene55101:CDS | 30.0% | |
| CTTGTCAAATCACTTGAAAT+TGG | + | chr2.2:49357748-49357767 | None:intergenic | 30.0% | |
| GAAGAAATAGGAAAGTTGTT+TGG | - | chr2.2:49354629-49354648 | MS.gene55101:CDS | 30.0% | |
| GACAAAGATGTTTATGTCAA+GGG | - | chr2.2:49357864-49357883 | MS.gene55101:CDS | 30.0% | |
| GATACAGTTTCTTTAACTGA+AGG | - | chr2.2:49354329-49354348 | MS.gene55101:CDS | 30.0% | |
| GATTATGTTGTGGAAGAAAT+AGG | - | chr2.2:49354617-49354636 | MS.gene55101:CDS | 30.0% | |
| GATTTGACAAGAGAAACATT+AGG | - | chr2.2:49357757-49357776 | MS.gene55101:CDS | 30.0% | |
| GCATTTCTTAAAGAAGAAGA+TGG | + | chr2.2:49353735-49353754 | None:intergenic | 30.0% | |
| GTTAGTGATTATGTTGCATT+AGG | - | chr2.2:49354512-49354531 | MS.gene55101:CDS | 30.0% | |
| TCAACTTTAACACTCAAAAG+TGG | + | chr2.2:49353981-49354000 | None:intergenic | 30.0% | |
| TCATAACTCTACTAACAGAA+GGG | + | chr2.2:49354037-49354056 | None:intergenic | 30.0% | |
| TGACAAAGATGTTTATGTCA+AGG | - | chr2.2:49357863-49357882 | MS.gene55101:CDS | 30.0% | |
| TGGTAAAGAGGATAGAAAAT+GGG | - | chr2.2:49358083-49358102 | MS.gene55101:CDS | 30.0% | |
| TGTATAAATGAAGGGAAAAG+TGG | - | chr2.2:49355589-49355608 | MS.gene55101:CDS | 30.0% | |
| TTGGAATTGGATTCTCTTAA+GGG | - | chr2.2:49356902-49356921 | MS.gene55101:intron | 30.0% | |
| ! | ACTCATTTTGTGAAGTTTCA+TGG | - | chr2.2:49354413-49354432 | MS.gene55101:CDS | 30.0% |
| ! | AGAGATTGTTGATTATGTTG+TGG | - | chr2.2:49354607-49354626 | MS.gene55101:CDS | 30.0% |
| ! | AGCAAGCATTTTCCTTAAAA+GGG | + | chr2.2:49357347-49357366 | None:intergenic | 30.0% |
| ! | AGTTGAAATGTTTTCTCAGA+TGG | - | chr2.2:49357210-49357229 | MS.gene55101:CDS | 30.0% |
| ! | ATTGCAAAGTTTGGAACTTT+AGG | - | chr2.2:49357379-49357398 | MS.gene55101:CDS | 30.0% |
| ! | CATAGACTAAAGTACCAAAA+AGG | + | chr2.2:49354864-49354883 | None:intergenic | 30.0% |
| ! | GAATTTGAGATTGCAAAGTT+TGG | - | chr2.2:49357370-49357389 | MS.gene55101:CDS | 30.0% |
| ! | TCATCAAAATCACCTTGTTT+AGG | - | chr2.2:49357538-49357557 | MS.gene55101:CDS | 30.0% |
| ! | TTCACATGATGTTTTGTACA+AGG | - | chr2.2:49355485-49355504 | MS.gene55101:intron | 30.0% |
| !! | AAAGTTTTTCAGTAACAAGG+AGG | - | chr2.2:49356091-49356110 | MS.gene55101:intron | 30.0% |
| !! | AGCTTCTTTTTCATAATTGG+AGG | + | chr2.2:49356150-49356169 | None:intergenic | 30.0% |
| !! | GACTCAGAAGATTTTAAGAA+AGG | + | chr2.2:49354236-49354255 | None:intergenic | 30.0% |
| !! | TACCAACTTTTGAGAATCAA+TGG | - | chr2.2:49354732-49354751 | MS.gene55101:CDS | 30.0% |
| !! | TATAAGAGTGTTGAAAAGGA+AGG | - | chr2.2:49354490-49354509 | MS.gene55101:CDS | 30.0% |
| !! | TCATATATACAAAGTGTTGC+AGG | - | chr2.2:49357027-49357046 | MS.gene55101:CDS | 30.0% |
| !!! | GATTTTGATGATGATGAAGA+TGG | + | chr2.2:49357529-49357548 | None:intergenic | 30.0% |
| !!! | TGAGTTTTTTTCATCTCATC+AGG | + | chr2.2:49354398-49354417 | None:intergenic | 30.0% |
| !!! | TTGGTTGAAAATGCTGATTT+TGG | - | chr2.2:49357316-49357335 | MS.gene55101:CDS | 30.0% |
| AAACCAAGTAACAACAACCT+TGG | - | chr2.2:49356883-49356902 | MS.gene55101:intron | 35.0% | |
| AAAGGTGAAGTAGTAGTAGT+TGG | + | chr2.2:49353843-49353862 | None:intergenic | 35.0% | |
| AAGAAGAACACTGTGATAGT+TGG | - | chr2.2:49354305-49354324 | MS.gene55101:CDS | 35.0% | |
| AAGATACTACTACCTTGGTT+TGG | + | chr2.2:49356725-49356744 | None:intergenic | 35.0% | |
| AAGGGTAAAAGAGTCATTTG+AGG | - | chr2.2:49357882-49357901 | MS.gene55101:CDS | 35.0% | |
| AATTGTTGTCAATTGTCGCA+TGG | + | chr2.2:49355068-49355087 | None:intergenic | 35.0% | |
| ACAAGTTTAGAGAGGGTTAA+TGG | - | chr2.2:49358021-49358040 | MS.gene55101:CDS | 35.0% | |
| ACGCATTAATTAACCTAGAC+CGG | + | chr2.2:49356350-49356369 | None:intergenic | 35.0% | |
| AGAAGATGAAGACTATGATG+AGG | - | chr2.2:49357711-49357730 | MS.gene55101:CDS | 35.0% | |
| AGGATAGAAAATGGGATAGT+GGG | - | chr2.2:49358091-49358110 | MS.gene55101:CDS | 35.0% | |
| AGTAACAACAACCTTGGAAT+TGG | - | chr2.2:49356889-49356908 | MS.gene55101:intron | 35.0% | |
| ATGAGTGCATTAGAAAGAGA+AGG | + | chr2.2:49353885-49353904 | None:intergenic | 35.0% | |
| ATTGGATTCTCTTAAGGGTA+TGG | - | chr2.2:49356907-49356926 | MS.gene55101:intron | 35.0% | |
| CAAAACAAAGTGAAGCAGAA+AGG | + | chr2.2:49355431-49355450 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr2.2:49355545-49355564 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr2.2:49355546-49355565 | None:intergenic | 35.0% | |
| CCAAGGATTGAAGAAAATGA+AGG | - | chr2.2:49357607-49357626 | MS.gene55101:CDS | 35.0% | |
| CTCATAACTCTACTAACAGA+AGG | + | chr2.2:49354038-49354057 | None:intergenic | 35.0% | |
| CTGTCTACGGTTAATCATTT+CGG | - | chr2.2:49354978-49354997 | MS.gene55101:CDS | 35.0% | |
| CTTAAGAGAATCCAATTCCA+AGG | + | chr2.2:49356903-49356922 | None:intergenic | 35.0% | |
| CTTGGAAATTCAACATTCAG+TGG | - | chr2.2:49356962-49356981 | MS.gene55101:CDS | 35.0% | |
| CTTGGAATTGGATTCTCTTA+AGG | - | chr2.2:49356901-49356920 | MS.gene55101:intron | 35.0% | |
| GAAGATGAAGACTATGATGA+GGG | - | chr2.2:49357712-49357731 | MS.gene55101:CDS | 35.0% | |
| GATAAGGTGATAGAGGAAAT+TGG | - | chr2.2:49357937-49357956 | MS.gene55101:CDS | 35.0% | |
| GATGGTGATAACTCAAAAGT+TGG | + | chr2.2:49357511-49357530 | None:intergenic | 35.0% | |
| GATTATGTTGCATTAGGTGT+TGG | - | chr2.2:49354518-49354537 | MS.gene55101:CDS | 35.0% | |
| GGAACAAGAATGGTAAGATT+TGG | - | chr2.2:49354660-49354679 | MS.gene55101:CDS | 35.0% | |
| GTGGTAAAGAGGATAGAAAA+TGG | - | chr2.2:49358082-49358101 | MS.gene55101:CDS | 35.0% | |
| GTTGGAGCTATATTCTATGT+TGG | - | chr2.2:49354536-49354555 | MS.gene55101:CDS | 35.0% | |
| GTTTGAACTATAAGCTGGTT+TGG | + | chr2.2:49356789-49356808 | None:intergenic | 35.0% | |
| GTTTGAGTCTTCATTCATCA+AGG | - | chr2.2:49354792-49354811 | MS.gene55101:CDS | 35.0% | |
| TAGTTCAATAGCAGAAGCTT+TGG | - | chr2.2:49357078-49357097 | MS.gene55101:CDS | 35.0% | |
| TCTATGTTGGAGATTTGAAG+TGG | - | chr2.2:49354549-49354568 | MS.gene55101:CDS | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr2.2:49355559-49355578 | None:intergenic | 35.0% | |
| TGAATCCGTAATGTCTAAAG+AGG | + | chr2.2:49355469-49355488 | None:intergenic | 35.0% | |
| TGATAGAGGAAATTGGTGTA+GGG | - | chr2.2:49357944-49357963 | MS.gene55101:CDS | 35.0% | |
| TGCAAGGAAATGATTCTGTT+GGG | - | chr2.2:49357143-49357162 | MS.gene55101:CDS | 35.0% | |
| TGGTTCAGATCAGAAAAAGA+TGG | - | chr2.2:49356982-49357001 | MS.gene55101:CDS | 35.0% | |
| TGTACAAGATAAGGTGATAG+AGG | - | chr2.2:49357930-49357949 | MS.gene55101:CDS | 35.0% | |
| TGTCAATGAAGATCAGAAGA+AGG | - | chr2.2:49357438-49357457 | MS.gene55101:CDS | 35.0% | |
| TTCTGTTGGGAAAAAAAGGT+TGG | - | chr2.2:49357156-49357175 | MS.gene55101:CDS | 35.0% | |
| TTGCAAGGAAATGATTCTGT+TGG | - | chr2.2:49357142-49357161 | MS.gene55101:CDS | 35.0% | |
| ! | AGTCATTTGAGGAGGTTTTT+GGG | - | chr2.2:49357893-49357912 | MS.gene55101:CDS | 35.0% |
| ! | ATTCCAAGGTTGTTGTTACT+TGG | + | chr2.2:49356889-49356908 | None:intergenic | 35.0% |
| ! | CAGCAAGCATTTTCCTTAAA+AGG | + | chr2.2:49357348-49357367 | None:intergenic | 35.0% |
| ! | CCAACAACCTTTTCAGAAAA+GGG | + | chr2.2:49357265-49357284 | None:intergenic | 35.0% |
| ! | CCTTCATTTTCTTCAATCCT+TGG | + | chr2.2:49357610-49357629 | None:intergenic | 35.0% |
| ! | GAAAGTTGTTTGGTGAAGAA+GGG | - | chr2.2:49354639-49354658 | MS.gene55101:CDS | 35.0% |
| ! | GGTTGATTCCAAATCATCAA+AGG | - | chr2.2:49357099-49357118 | MS.gene55101:CDS | 35.0% |
| ! | TCTTTAACTGAAGGACTAGT+TGG | - | chr2.2:49354338-49354357 | MS.gene55101:CDS | 35.0% |
| ! | TTACATGAGGTGTCAAATGA+GGG | - | chr2.2:49354709-49354728 | MS.gene55101:CDS | 35.0% |
| !! | AAAAGCATTGTTGGTTGGTA+AGG | - | chr2.2:49355384-49355403 | MS.gene55101:intron | 35.0% |
| !! | AAAATGGGATAGTGGGTTTA+TGG | - | chr2.2:49358098-49358117 | MS.gene55101:CDS | 35.0% |
| !! | AAATGGGATAGTGGGTTTAT+GGG | - | chr2.2:49358099-49358118 | MS.gene55101:CDS | 35.0% |
| !! | ACTGTTGATTTGAGATCAAC+CGG | - | chr2.2:49356328-49356347 | MS.gene55101:intron | 35.0% |
| !! | ATTTTGGTGACACCCTTTTA+AGG | - | chr2.2:49357332-49357351 | MS.gene55101:CDS | 35.0% |
| !! | CACCATTGATTCTCAAAAGT+TGG | + | chr2.2:49354737-49354756 | None:intergenic | 35.0% |
| !! | CCTTTTCTGAAAAGGTTGTT+GGG | - | chr2.2:49357263-49357282 | MS.gene55101:CDS | 35.0% |
| !! | GATATTGAACTTGGTGTATC+TGG | + | chr2.2:49356749-49356768 | None:intergenic | 35.0% |
| !! | TGGATAGTGGATGATAATGA+TGG | - | chr2.2:49354569-49354588 | MS.gene55101:CDS | 35.0% |
| !!! | GGTTTTGAGGTTTTTTGTTC+AGG | + | chr2.2:49356637-49356656 | None:intergenic | 35.0% |
| !!! | GTTCCACTTTTTGTTCAACT+GGG | + | chr2.2:49356594-49356613 | None:intergenic | 35.0% |
| !!! | TGTTCCACTTTTTGTTCAAC+TGG | + | chr2.2:49356595-49356614 | None:intergenic | 35.0% |
| !!! | TTTGAGGTTTTTTGTTCAGG+TGG | + | chr2.2:49356634-49356653 | None:intergenic | 35.0% |
| AACAGAAGGGTCATCAAGAA+TGG | + | chr2.2:49354024-49354043 | None:intergenic | 40.0% | |
| AACTGTGATTGTTGCTCCAA+TGG | + | chr2.2:49356658-49356677 | None:intergenic | 40.0% | |
| AGAAGAATCTGTTGCCTTCA+TGG | - | chr2.2:49356189-49356208 | MS.gene55101:intron | 40.0% | |
| AGCTCAAGCTCATCAAAGAA+GGG | - | chr2.2:49353920-49353939 | MS.gene55101:CDS | 40.0% | |
| AGTAGAGTTATGAGAGAAGC+TGG | - | chr2.2:49354044-49354063 | MS.gene55101:CDS | 40.0% | |
| AGTTTAGAGAGGGTTAATGG+TGG | - | chr2.2:49358024-49358043 | MS.gene55101:CDS | 40.0% | |
| ATGAAGGCAACAGATTCTTC+TGG | + | chr2.2:49356190-49356209 | None:intergenic | 40.0% | |
| ATTCTGGACTATATGGCAGA+AGG | - | chr2.2:49355354-49355373 | MS.gene55101:intron | 40.0% | |
| ATTGACAATACTGCCACCAT+TGG | + | chr2.2:49357425-49357444 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr2.2:49355543-49355562 | MS.gene55101:CDS | 40.0% | |
| CGAAATGATTAACCGTAGAC+AGG | + | chr2.2:49354980-49354999 | None:intergenic | 40.0% | |
| CTAACTGTTTCACATTGCCA+TGG | + | chr2.2:49357061-49357080 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+AGG | - | chr2.2:49355729-49355748 | MS.gene55101:intron | 40.0% | |
| GAAGGATTCAGTGATGAAGT+TGG | - | chr2.2:49357456-49357475 | MS.gene55101:CDS | 40.0% | |
| GAGGATAGAAAATGGGATAG+TGG | - | chr2.2:49358090-49358109 | MS.gene55101:CDS | 40.0% | |
| GCAATTGCAGAATCAGTGTT+TGG | - | chr2.2:49357184-49357203 | MS.gene55101:CDS | 40.0% | |
| GCTAAGTATGTACGGTATTC+TGG | - | chr2.2:49355338-49355357 | MS.gene55101:intron | 40.0% | |
| GGTAAAAGAGTCATTTGAGG+AGG | - | chr2.2:49357885-49357904 | MS.gene55101:CDS | 40.0% | |
| GTAAAGACAACTCTTGCACT+TGG | - | chr2.2:49356944-49356963 | MS.gene55101:intron | 40.0% | |
| GTACGGTATTCTGGACTATA+TGG | - | chr2.2:49355347-49355366 | MS.gene55101:intron | 40.0% | |
| GTCATTTCCTTGTTCTTAGC+TGG | + | chr2.2:49357847-49357866 | None:intergenic | 40.0% | |
| GTGATAGAGGAAATTGGTGT+AGG | - | chr2.2:49357943-49357962 | MS.gene55101:CDS | 40.0% | |
| GTTTAGAGAGGGTTAATGGT+GGG | - | chr2.2:49358025-49358044 | MS.gene55101:CDS | 40.0% | |
| GTTTATACACTTTGTTGGGG+TGG | - | chr2.2:49358063-49358082 | MS.gene55101:CDS | 40.0% | |
| TCAAAGTCCAGCTAAGAACA+AGG | - | chr2.2:49357837-49357856 | MS.gene55101:CDS | 40.0% | |
| TCAAGAGCTCTACATTGAAG+AGG | + | chr2.2:49353789-49353808 | None:intergenic | 40.0% | |
| TGACCCAGTTGAACAAAAAG+TGG | - | chr2.2:49356588-49356607 | MS.gene55101:intron | 40.0% | |
| TTGAACTTAGCACCTGTCTA+CGG | - | chr2.2:49354965-49354984 | MS.gene55101:CDS | 40.0% | |
| TTGATTCCAGCATAGGAGAT+GGG | + | chr2.2:49356073-49356092 | None:intergenic | 40.0% | |
| TTTAGAGAGGGTTAATGGTG+GGG | - | chr2.2:49358026-49358045 | MS.gene55101:CDS | 40.0% | |
| TTTGATTCCAGCATAGGAGA+TGG | + | chr2.2:49356074-49356093 | None:intergenic | 40.0% | |
| ! | AGCACACTCCTTTGATGATT+TGG | + | chr2.2:49357110-49357129 | None:intergenic | 40.0% |
| ! | CCCAACAACCTTTTCAGAAA+AGG | + | chr2.2:49357266-49357285 | None:intergenic | 40.0% |
| ! | GAGTCATTTGAGGAGGTTTT+TGG | - | chr2.2:49357892-49357911 | MS.gene55101:CDS | 40.0% |
| ! | GATTCTCTTAAGGGTATGGA+AGG | - | chr2.2:49356911-49356930 | MS.gene55101:intron | 40.0% |
| ! | GGAAAGTTGTTTGGTGAAGA+AGG | - | chr2.2:49354638-49354657 | MS.gene55101:CDS | 40.0% |
| ! | GTTAATGGTGGGGGTAAAAA+TGG | - | chr2.2:49358036-49358055 | MS.gene55101:CDS | 40.0% |
| ! | GTTACATGAGGTGTCAAATG+AGG | - | chr2.2:49354708-49354727 | MS.gene55101:CDS | 40.0% |
| ! | TCAATCTTGAAGCACTCTCT+AGG | - | chr2.2:49353642-49353661 | MS.gene55101:CDS | 40.0% |
| ! | TGGAGATTTGAAGTGGATAG+TGG | - | chr2.2:49354556-49354575 | MS.gene55101:CDS | 40.0% |
| ! | TTTTGTTCAGGTGGAGACAT+TGG | + | chr2.2:49356625-49356644 | None:intergenic | 40.0% |
| !! | AGAGACACCCTTTTCTGAAA+AGG | - | chr2.2:49357255-49357274 | MS.gene55101:CDS | 40.0% |
| !! | CATTGTTGGTTGGTAAGGTA+AGG | - | chr2.2:49355389-49355408 | MS.gene55101:intron | 40.0% |
| !! | CCCTTTTCTGAAAAGGTTGT+TGG | - | chr2.2:49357262-49357281 | MS.gene55101:CDS | 40.0% |
| !! | CTGTGAAAAGCATTGTTGGT+TGG | - | chr2.2:49355379-49355398 | MS.gene55101:intron | 40.0% |
| !! | TACCTTGGTTTGGCCAATAA+GGG | + | chr2.2:49356715-49356734 | None:intergenic | 40.0% |
| !! | TTGTTGCTCCAATGGTTTTG+AGG | + | chr2.2:49356650-49356669 | None:intergenic | 40.0% |
| !!! | GCTACTTGGTTGTTTTTGCA+AGG | - | chr2.2:49357127-49357146 | MS.gene55101:CDS | 40.0% |
| ACATGCTGTGGTTGAAGCAA+AGG | + | chr2.2:49353861-49353880 | None:intergenic | 45.0% | |
| ACTTTGTTGGGGTGGTAAAG+AGG | - | chr2.2:49358071-49358090 | MS.gene55101:CDS | 45.0% | |
| ATGGGTCAGTTATTCCAGGA+CGG | - | chr2.2:49355733-49355752 | MS.gene55101:intron | 45.0% | |
| CTATGAGAGTGAAGCCATGA+AGG | + | chr2.2:49356206-49356225 | None:intergenic | 45.0% | |
| CTCAAGCTCATCAAAGAAGG+GGG | - | chr2.2:49353922-49353941 | MS.gene55101:CDS | 45.0% | |
| CTGGCAAGATACTACTACCT+TGG | + | chr2.2:49356730-49356749 | None:intergenic | 45.0% | |
| CTTCAAGATTGAAGCAGCCT+CGG | + | chr2.2:49353634-49353653 | None:intergenic | 45.0% | |
| GAAAGAGAAGGAACATGCTG+TGG | + | chr2.2:49353873-49353892 | None:intergenic | 45.0% | |
| GAGCTCAAGCTCATCAAAGA+AGG | - | chr2.2:49353919-49353938 | MS.gene55101:CDS | 45.0% | |
| GCTCAAGCTCATCAAAGAAG+GGG | - | chr2.2:49353921-49353940 | MS.gene55101:CDS | 45.0% | |
| GGTGAAGAAGGGAACAAGAA+TGG | - | chr2.2:49354650-49354669 | MS.gene55101:CDS | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr2.2:49355541-49355560 | None:intergenic | 45.0% | |
| TACCCTTATTGGCCAAACCA+AGG | - | chr2.2:49356710-49356729 | MS.gene55101:intron | 45.0% | |
| TCAAAACCCATCTCCTATGC+TGG | - | chr2.2:49356064-49356083 | MS.gene55101:intron | 45.0% | |
| TGTTGCAGGAGAATGTTCCA+TGG | - | chr2.2:49357041-49357060 | MS.gene55101:CDS | 45.0% | |
| TTAGAGAGGGTTAATGGTGG+GGG | - | chr2.2:49358027-49358046 | MS.gene55101:CDS | 45.0% | |
| ! | CATCAAAGGAGTGTGCTACT+TGG | - | chr2.2:49357113-49357132 | MS.gene55101:CDS | 45.0% |
| ! | GAAGAGGTGTGATTTGTGCA+TGG | + | chr2.2:49353686-49353705 | None:intergenic | 45.0% |
| ! | GATTTGAGATCAACCGGTCT+AGG | - | chr2.2:49356334-49356353 | MS.gene55101:intron | 45.0% |
| !! | CTACCTTGGTTTGGCCAATA+AGG | + | chr2.2:49356716-49356735 | None:intergenic | 45.0% |
| !! | GGCACTGTGAAAAGCATTGT+TGG | - | chr2.2:49355375-49355394 | MS.gene55101:intron | 45.0% |
| !! | TAAATTATTTAAAAATGATT+CGG | + | chr2.2:49356307-49356326 | None:intergenic | 5.0% |
| AGTGTAGCAGCAACGTGAAG+AGG | + | chr2.2:49353702-49353721 | None:intergenic | 50.0% | |
| CAAGCTGTTCCTGTTCCATC+TGG | - | chr2.2:49354761-49354780 | MS.gene55101:CDS | 50.0% | |
| CTAGGCTTAGCACGTAGAAG+AGG | - | chr2.2:49353660-49353679 | MS.gene55101:CDS | 50.0% | |
| CTCAAACCAAGTCCACCAGA+TGG | + | chr2.2:49354779-49354798 | None:intergenic | 50.0% | |
| GAGGAAATTGGTGTAGGGTG+TGG | - | chr2.2:49357949-49357968 | MS.gene55101:CDS | 50.0% | |
| GGCAACAGATTCTTCTGGTC+TGG | + | chr2.2:49356185-49356204 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | + | chr2.2:49355537-49355556 | None:intergenic | 50.0% | |
| GTCAGTTATTCCAGGACGGA+GGG | - | chr2.2:49355737-49355756 | MS.gene55101:intron | 50.0% | |
| TGCATGATTGTTGTCCGCGA+CGG | + | chr2.2:49356826-49356845 | None:intergenic | 50.0% | |
| TTATGATACTCCCTCCGTCC+TGG | + | chr2.2:49355750-49355769 | None:intergenic | 50.0% | |
| ! | TAGCACAGAAGCACGTCAGA+AGG | - | chr2.2:49356223-49356242 | MS.gene55101:intron | 50.0% |
| !!! | GACGGAGGGAGTATTGCTTT+TGG | + | chr2.2:49355523-49355542 | None:intergenic | 50.0% |
| AAGCAATACTCCCTCCGTCC+CGG | - | chr2.2:49355524-49355543 | MS.gene55101:CDS | 55.0% | |
| CCAAGTCCACCAGATGGAAC+AGG | + | chr2.2:49354773-49354792 | None:intergenic | 55.0% | |
| CTTATACCTCGGTTCCGTCG+CGG | - | chr2.2:49356809-49356828 | MS.gene55101:intron | 55.0% | |
| GCAAGAGACACTAACAGCCG+AGG | - | chr2.2:49353614-49353633 | MS.gene55101:CDS | 55.0% | |
| GCTGTTCCTGTTCCATCTGG+TGG | - | chr2.2:49354764-49354783 | MS.gene55101:CDS | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr2.2:49355538-49355557 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCAGGACGG+AGG | - | chr2.2:49355736-49355755 | MS.gene55101:intron | 55.0% | |
| GTGGTTGCTGCTGCTGTTGT+TGG | + | chr2.2:49353962-49353981 | None:intergenic | 55.0% | |
| !! | CCTGTTCCATCTGGTGGACT+TGG | - | chr2.2:49354770-49354789 | MS.gene55101:CDS | 55.0% |
| CGCGACGGAACCGAGGTATA+AGG | + | chr2.2:49356811-49356830 | None:intergenic | 60.0% | |
| TGTTGTCCGCGACGGAACCG+AGG | + | chr2.2:49356818-49356837 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 49353591 | 49358170 | 49353591 | ID=MS.gene55101 |
| chr2.2 | mRNA | 49353591 | 49358170 | 49353591 | ID=MS.gene55101.t1;Parent=MS.gene55101 |
| chr2.2 | exon | 49356948 | 49358170 | 49356948 | ID=MS.gene55101.t1.exon1;Parent=MS.gene55101.t1 |
| chr2.2 | CDS | 49356948 | 49358170 | 49356948 | ID=cds.MS.gene55101.t1;Parent=MS.gene55101.t1 |
| chr2.2 | exon | 49355517 | 49355724 | 49355517 | ID=MS.gene55101.t1.exon2;Parent=MS.gene55101.t1 |
| chr2.2 | CDS | 49355517 | 49355724 | 49355517 | ID=cds.MS.gene55101.t1;Parent=MS.gene55101.t1 |
| chr2.2 | exon | 49353591 | 49355180 | 49353591 | ID=MS.gene55101.t1.exon3;Parent=MS.gene55101.t1 |
| chr2.2 | CDS | 49353591 | 49355180 | 49353591 | ID=cds.MS.gene55101.t1;Parent=MS.gene55101.t1 |
| Gene Sequence |
| Protein sequence |
