AlfalfaGEDB | MS.gene22569

M. sativa cultivar XinJiangDaYe / MS.gene22569

KEGG: -
GO: -
PFAM: PF10693.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22569.t1	XP_003611209.1	95.3	172	8	0	1	172	1	172	7.20E-88	333.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22569.t1	Q55720	61.6	99	38	0	71	169	2	100	2.0e-30	133.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22569.t1	G7KEW0	95.3	172	8	0	1	172	1	172	5.2e-88	333.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene22569	0.812618	3.87E-51	-1.69E-46
MS.gene049171	MS.gene22569	0.929237	9.26E-93	-1.69E-46
MS.gene049173	MS.gene22569	0.838565	2.67E-57	-1.69E-46
MS.gene049181	MS.gene22569	-0.80523	1.48E-49	-1.69E-46
MS.gene049217	MS.gene22569	0.864685	1.02E-64	-1.69E-46
MS.gene049222	MS.gene22569	0.902839	6.43E-79	-1.69E-46
MS.gene049232	MS.gene22569	0.883757	3.42E-71	-1.69E-46
MS.gene049281	MS.gene22569	-0.842826	2.04E-58	-1.69E-46
MS.gene049285	MS.gene22569	0.928527	2.55E-92	-1.69E-46
MS.gene049312	MS.gene22569	-0.800278	1.55E-48	-1.69E-46

Showing 1 to 10 of 249 entries

Previous1 2 3 4 5…25Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22569.t1	MTR_5g011460	95.349	172	8	0	1	172	1	172	2.74e-120	337
MS.gene22569.t1	MTR_5g011478	80.000	45	7	1	130	172	26	70	1.53e-15	67.8

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22569.t1	AT4G22830	81.905	105	19	0	63	167	82	186	1.53e-60	186
MS.gene22569.t1	AT4G22830	82.692	104	18	0	64	167	91	194	4.51e-60	185

Showing 1 to 2 of 2 entries

Previous1Next

Find 48 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTTCTCACCTCAA+GGG	0.622988	5.2:-4162895	None:intergenic
AAATAAAAGGATTATAGCTA+TGG	0.511627	5.2:+4161806	MS.gene22569:intron
AAATATTCTCAGAGCTTTCG+CGG	0.544529	5.2:-4165434	None:intergenic
AAGCTTGGAAGGGTCTTTCC+TGG	0.322451	5.2:+4161865	MS.gene22569:CDS
AAGGATTATAGCTATGGCTT+TGG	0.438111	5.2:+4161812	MS.gene22569:intron
AAGTGGAAGTTGAATGTACG+AGG	0.666941	5.2:-4161589	None:intergenic
AAGTGGGATAGACCAGCTTT+CGG	0.451603	5.2:-4161543	None:intergenic
AAGTTGTTTCTACAACGTTG+AGG	0.647322	5.2:-4161566	None:intergenic
AATAACAGTAGCTATCGATT+TGG	0.348207	5.2:+4161510	MS.gene22569:CDS
AATATTCTCAGAGCTTTCGC+GGG	0.537497	5.2:-4165433	None:intergenic

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAAGACTGTAAGTTAG+TGG	+	chr5.2:4164741-4164760	MS.gene22569:intron	30.0%
AAATCTGGTCTATTAGGAAT+TGG	+	chr5.2:4163598-4163617	MS.gene22569:intron	30.0%
AAGTCCTACATTTCTTGTAA+AGG	+	chr5.2:4162047-4162066	MS.gene22569:intron	30.0%
AAGTCTACATTCAGATAGAA+AGG	-	chr5.2:4164845-4164864	None:intergenic	30.0%
AATCGTGATTAATGACATGT+AGG	+	chr5.2:4162280-4162299	MS.gene22569:intron	30.0%
AATGAGTGAATGATCGTAAA+AGG	+	chr5.2:4163961-4163980	MS.gene22569:intron	30.0%
ACATTTCTTGTAAAGGAAGA+AGG	+	chr5.2:4162054-4162073	MS.gene22569:intron	30.0%
ACTACATTTGCAATTGCAAA+TGG	-	chr5.2:4162775-4162794	None:intergenic	30.0%
AGTCTACATTCAGATAGAAA+GGG	-	chr5.2:4164844-4164863	None:intergenic	30.0%
ATCGTGATTAATGACATGTA+GGG	+	chr5.2:4162281-4162300	MS.gene22569:intron	30.0%

Showing 1 to 10 of 270 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	4161426	4165458	4161426	ID=MS.gene22569
chr5.2	mRNA	4161426	4165458	4161426	ID=MS.gene22569.t1;Parent=MS.gene22569
chr5.2	exon	4161426	4161688	4161426	ID=MS.gene22569.t1.exon1;Parent=MS.gene22569.t1
chr5.2	CDS	4161426	4161688	4161426	ID=cds.MS.gene22569.t1;Parent=MS.gene22569.t1
chr5.2	exon	4161815	4161893	4161815	ID=MS.gene22569.t1.exon2;Parent=MS.gene22569.t1
chr5.2	CDS	4161815	4161893	4161815	ID=cds.MS.gene22569.t1;Parent=MS.gene22569.t1
chr5.2	exon	4162834	4162902	4162834	ID=MS.gene22569.t1.exon3;Parent=MS.gene22569.t1
chr5.2	CDS	4162834	4162902	4162834	ID=cds.MS.gene22569.t1;Parent=MS.gene22569.t1
chr5.2	exon	4165351	4165458	4165351	ID=MS.gene22569.t1.exon4;Parent=MS.gene22569.t1
chr5.2	CDS	4165351	4165458	4165351	ID=cds.MS.gene22569.t1;Parent=MS.gene22569.t1

Gene Sequence

>MS.gene22569

ATGGCTGCTGCAGCCAAGTTGTACTTAGCAAAACCATGTTGTTCTACTCCCAAAATCCCGTTTCCGTCAAATTCAAGAGTTTTCAATAACAGTAGCTATCGATTTGGAACCTTAAAACCGAAAGCTGGTCTATCCCACTTCCTCAACGTTGTAGAAACAACTTCCTCGTACATTCAACTTCCACTTCAACTTGAACTTCAAGAACCATCCAATGCACTGTCTTTGCCCACTTGGGCTGTTCATGTCTCCAGCGTCGTTGAATGGTATCAATTTGACTTTTAACTTATCCGTTCTATCTGGTACTCTAGTATTTTTTTTTTTTTGACCAATACTACTCTAGTATTTTAATGTTCATTGTTTGTGTTTTTTTTATAAAAAAAAAATAAAAGGATTATAGCTATGGCTTTGGTGTGGCAATATGGGGAGAAATCTGGGCATGAAGCTTGGAAGGGTCTTTCCTGGGGCATGGTAAGTTTTTTAATTTTAATTCTTTCAAAAAAATTATTTTACTGTTATTATTATTAGGTTTATTATTTTGACGTAAGATAAGATAAAAAATTGAGTATAGTTGAGGTAGTTCAAATTGTTGGTGTTGTTGGTTGAAAATATACAATGTTGAAGAAGTCCTACATTTCTTGTAAAGGAAGAAGGAGACCAACCAAGACTATATACATGGACTCTAGTTCTTCATTACAAGTTACGCTAGTCATACCATAAATCAAACGCAATTTTGAACGTCATTAACTATGGTTTTTAGGTGTATATTTGAACATAAAGCGTAGTTAACAAATATCATGTATATTTGAACACAATTTGAATGGTTAATTGATATCGTGTATATTTGAACACTTGAAAATCGTGATTAATGACATGTAGGGACGGTTAATGAGTTGTGATAGATTGTTATATTCATTCTTTTTTTTTTTTTTTGGAAAAAAGATTGTTATATTCATTAATCACCACCGGATGTAACCACATATTTAAAATGTCTTTAATCGTCCAGATTGTTGTCGAAATTTGCTTGAAAATGTGTATCAAAATGTCATTTTTGTATTATTATAATTTCTTTGTTCCATTGCTACTCTAGAGCTAGTCTTGTATGGTCACAAACCAAACGTATAATGTTTAGATACTCATACAAAGAGACATTTTTTCTAGTAATTTAAAATAAAATTGATTTTGACCAAAAAATAAATTAAAAAAAAATTGATTTATCATTTTGGGGATAAGTGCCTCTTTGCATCTCTGTGTGTGTGCGCGCGCGCTTAAACACTATACATTCGGTTTTGTGACCAAGCAAGTATTTCTCTGCTACTGGCATGTCTTTTACTTCATATCTTATATTTCCATTTGCAATTGCAAATGTAGTTTGCATAACTCTTAACCCTATGTTATCTAATTGTTGTAGGTACCTCTACTTGGTGGAGCATTTTGTGCATGCACATGGCATTTCTTTTATAACTCTGACTCCCTTGAGGTGAGAAAGCCTTTTTTCCTCTATACAGAACATCTATTAATTTATTACTACTAGAATTGTTGATTGAGGGCACCGTTCATATTTAAAGCCGAAATGGGTCTTCTTGTATAATTTAATTTGTCACAAAACACCATGAATGGCTACGGAAGGTTTTGTACCTGAATGATTTTCTCTCAACATTGTTGAACACATTTTACTTGTCGCAGCAATGGTTACTAAACTCTGCATCTAGACTAAAGAATTTCTACAATGTCTGTATTTTGCAATGCTTTTTCTTCATCAAAACTCAACAACGTCTCGACCTTATGGAACAAATTCATGACAGTTTAAACTAAGCCGCTGGAGCTTAAAAGCAAATTTCTATGCTCTTACCTATTCTTTCAAGTGTTGTTTAAAAAGCATTCTGTTGTGCAAGAAAAAGCAAAGCACGGGGTGGGGGGGGTGGGGGCAGGATTGAATTTGGTCAAAATGAGGGCTCAGGTAGAGGTTGCATTTAGGGGACATTTAAATTGGCTTATTTGAGTTTACCTACTACCATAAGCACTCGTGATACTGTTTGATAGAACTTATGAAAACTGTTCATGACATGTTCAAAAACTGTTTTTTATTTATTGCCATAAGCTCTCCATGATAAACACTTATATGATGCTGCTCCAGTCCTTCATATGCTGTCTAAAGCGAATGCCAAATGGTCAAAATCTGGTCTATTAGGAATTGGATTGGTGTAACCTCTGATCAAAATCTCATCACACCAATTCCATAAAAAGAGATTATTTATATTCATTGTCATGATAGGCAGCTTGGTGGATGTTGGTTGGTTGATTCCACAATACATTCAGAATTTTGCACAAAGCAAAGCTGAAAGCTGGGCTTTGGTAACTATCTCATTTGCCTAGTTGTGAAAGGCGGTTGGAGTTGAAATTATTGGTGACAAGCAAAACAATCCATCTTTTGCTGTCAACAATTGTTGCCATCACCAAGGCCGGCCGGTTTCTCCTCCTTTTGTTGTTGTTGATGCTGTCATTATTACCAAAATCTATATTATACCTAAGGTTGGGAATGAGTGAATGATCGTAAAAGGAAGGATTGTAGCATAGACTGTAAAATCCTTCATGAAATTAAAACTGTTACTTAAGCACACTGTTCATACACATGCATAGAACTGTGCTAGTTCACACATGCATAGATGCTTTTGTAACTTGCTTCTTTTTGGCCAATTAACCACCACAAAAACATCATTCTTATTTTGTTTTAAACAGTTTCTTTTCTTGGTGTGACATAGAAAATTATACAACCAATTCAGACATTGTAGGTACCAAGTAATTTGAGGAATTGAATACAATTTGTTTCATTAATTTGGTTTCTTACCATCTCTAACCATTCTCAAAATCTAAGGTAAAACATACTTCAGAAACAACACACTTCTGCAGGTTCGCCTTCAGAAAAAGAAAAAAAAAACTTCTGTAGGTTTGGATACAGGTCATTGCCATAAGATTCCGACAACTGTGCTAGAGTTTTGATTTTTCAAGTGTAGAATTTTCACTCTGCACTTTAAACTTTTTTTGATCTATTTTCAAAATCTACAATTTGATCATCAATCTTATTTATCTTTTCCACATCTCTCACCATCCTTTTTAGACAATCTAGGCCTGATTGTTCAACTGTGCTAGTTCACATTTTATTTCATAGTCAACTTTGAAATTATGACTATAATACAAAATGTGGCTTAGGTGATAAGTTTGCTGTGTTTAAAGGCCTGTGCAGATAGTTATCCCTTCTTTCATCAACCATGTCCTATGGAGGTATGTAACTAGAGAATGGGACAAAAATCAGTTCTAAAACTAAGACTGTAAGTTAGTGGAAATTGGAAAACAATAATTTACCTCTGTCTAAGACCATTGAAGGAAAACTAATAATTAAAGACGAAATGGGAGAATCCCCTTTCTATCTGAATGTAGACTTAAATTTTCTCATTTATTTAGAAACAAAACTGCCATTTGGTATACCAATGTATTAGGCATAGCCTTGCTATGCGTAGCCTGTCCCAAGCCCGGATGAAAGAAGAGGGTTGTGTTAGGCCTCAACGGCCAACGTAAAACTTTGTCGAATCTCTATGACATGGACCAAATACGATTATGGCGCAATCTGATCCATGTAGCCGATCCAACTTAGTGGGAAAAGGCCTGGTTGTTGTTGTATACCATTGTACTGCTATTATATATATATATATATATATTTGTGAAAATACAGAAAATTTGTTTTTTGGATTACTGAGTTTTTCTGCAATCATAATGTCTTCTATGGCTCAACACAGAGACGTTGTCATGAAATTTTTCTTGTTGCATGAGAACAATGGATAATGATCCGTACATATTGTGCTAAAATCTGATTGAATGTGAAATAGGGGTTCTGCATATGAAATTAATGGCTTTTTGAAATGAATTGCAGGTATTGGTAGCTCTTCAAGCGGCACTAACTGTTATAGGTAATATAACAATGTGCATAGCCGCATACCGGATATATAAATCATCCCGCGAAAGCTCTGAGAATATTTGA

Protein sequence

>MS.gene22569.t1

MAAAAKLYLAKPCCSTPKIPFPSNSRVFNNSSYRFGTLKPKAGLSHFLNVVETTSSYIQLPLQLELQEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGHEAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTVIGNITMCIAAYRIYKSSRESSENI