AlfalfaGEDB | MS.gene063003

M. sativa cultivar XinJiangDaYe / MS.gene063003

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063003.t1	XP_024638247.1	94.5	642	35	0	1	642	1	642	0.00E+00	1198.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063003.t1	Q5XF57	30.1	611	339	15	8	595	12	557	6.6e-66	253.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063003.t1	G7JMD5	94.3	644	35	1	1	642	1	644	0.0e+00	1193.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050170	MS.gene063003	-0.811845	5.71E-51	-1.69E-46
MS.gene052494	MS.gene063003	0.820397	7.01E-53	-1.69E-46
MS.gene052606	MS.gene063003	0.839844	1.24E-57	-1.69E-46
MS.gene053097	MS.gene063003	0.812958	3.26E-51	-1.69E-46
MS.gene05470	MS.gene063003	-0.813527	2.45E-51	-1.69E-46
MS.gene055158	MS.gene063003	0.800104	1.69E-48	-1.69E-46
MS.gene055240	MS.gene063003	0.814093	1.84E-51	-1.69E-46
MS.gene05589	MS.gene063003	-0.829478	5.03E-55	-1.69E-46
MS.gene056504	MS.gene063003	-0.806074	9.81E-50	-1.69E-46
MS.gene056748	MS.gene063003	0.807856	4.12E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene012239	MS.gene063003	PPI
MS.gene016742	MS.gene063003	PPI
MS.gene016743	MS.gene063003	PPI
MS.gene016758	MS.gene063003	PPI
MS.gene037019	MS.gene063003	PPI
MS.gene051793	MS.gene063003	PPI
MS.gene051828	MS.gene063003	PPI
MS.gene057883	MS.gene063003	PPI
MS.gene057884	MS.gene063003	PPI
MS.gene057886	MS.gene063003	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063003.t1	MTR_4g073140	95.963	644	24	1	1	642	1	644	0.0	1259
MS.gene063003.t1	MTR_4g073140	95.402	522	22	1	1	520	1	522	0.0	988
MS.gene063003.t1	MTR_4g073140	94.013	451	25	1	1	449	1	451	0.0	832
MS.gene063003.t1	MTR_3g117850	60.784	663	199	15	1	642	1	623	0.0	754
MS.gene063003.t1	MTR_3g117850	59.677	558	167	13	105	642	5	524	0.0	616
MS.gene063003.t1	MTR_3g117850	59.345	519	154	12	143	642	14	494	0.0	566
MS.gene063003.t1	MTR_1g029690	42.857	700	327	13	6	642	12	701	4.99e-162	481
MS.gene063003.t1	MTR_3g096555	42.836	677	308	17	6	642	11	648	1.08e-158	471
MS.gene063003.t1	MTR_3g096555	42.651	694	327	18	6	642	11	690	1.96e-157	469
MS.gene063003.t1	MTR_3g088640	45.914	514	249	11	158	642	241	754	1.51e-132	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063003.t1	AT2G16750	47.943	632	275	11	4	624	10	598	0.0	530
MS.gene063003.t1	AT2G16750	47.943	632	275	11	4	624	10	598	0.0	530
MS.gene063003.t1	AT4G35030	53.965	454	174	7	178	623	2	428	1.43e-157	461
MS.gene063003.t1	AT4G35030	53.965	454	174	7	178	623	2	428	1.43e-157	461
MS.gene063003.t1	AT4G35030	53.965	454	174	7	178	623	2	428	1.43e-157	461
MS.gene063003.t1	AT4G35030	53.965	454	174	7	178	623	2	428	1.43e-157	461
MS.gene063003.t1	AT5G63940	39.538	693	352	14	7	642	21	703	9.13e-148	445
MS.gene063003.t1	AT1G77280	49.680	469	222	6	186	642	287	753	2.82e-138	422
MS.gene063003.t1	AT1G77280	42.069	145	68	3	6	135	19	162	3.02e-24	108
MS.gene063003.t1	AT1G77280	49.680	469	222	6	186	642	287	753	2.82e-138	422

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Find 138 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATAATAGAGAGTG+GGG	0.627119	4.2:+35223092	MS.gene063003:CDS
AAAAGAGGTTTGTGTTGGTT+GGG	0.444879	4.2:+35220117	MS.gene063003:CDS
AAAATTTGATTGGGAAAGGA+GGG	0.571947	4.2:+35221942	MS.gene063003:CDS
AAACATTTGACGGATCAGAA+AGG	0.597247	4.2:+35221376	MS.gene063003:CDS
AAGATAGATGTCTATGCCTT+CGG	0.484358	4.2:+35222787	MS.gene063003:CDS
AAGATTCAAGAATCGTCTTC+GGG	0.529437	4.2:+35220863	MS.gene063003:CDS
AAGCTCTCCTGTCCTTTGCA+AGG	0.534557	4.2:-35222859	None:intergenic
AATATCCCCTCTAGGCCTTT+TGG	0.259919	4.2:-35221669	None:intergenic
AATGGATGCAGGAAAGAACA+AGG	0.618113	4.2:+35222278	MS.gene063003:intron
AATTGAGAAGCTGTCTGCTA+TGG	0.541023	4.2:-35220154	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAGAGCCTAATAGA+TGG	+	chr4.2:35220448-35220467	MS.gene063003:CDS	30.0%
AAAACATGTTTCAATTGCAG+AGG	+	chr4.2:35220775-35220794	MS.gene063003:intron	30.0%
AAAACCAATAATAGAGAGTG+GGG	+	chr4.2:35223092-35223111	MS.gene063003:CDS	30.0%
AAAATTTGATTGGGAAAGGA+GGG	+	chr4.2:35221942-35221961	MS.gene063003:CDS	30.0%
AAAGTTGTCGAGACTAAATT+TGG	+	chr4.2:35222550-35222569	MS.gene063003:intron	30.0%
AAATTGTGAGTTCAACTATC+GGG	+	chr4.2:35222985-35223004	MS.gene063003:intron	30.0%
ACTTCGTCCTAAATTTAATC+AGG	+	chr4.2:35223218-35223237	MS.gene063003:CDS	30.0%
AGATACTGAAGATCCTAAAA+GGG	+	chr4.2:35223431-35223450	MS.gene063003:intron	30.0%
AGATGTCTGAATTCGATTTA+CGG	-	chr4.2:35221470-35221489	None:intergenic	30.0%
ATTACTTGGAATTTGCATAG+AGG	+	chr4.2:35222105-35222124	MS.gene063003:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35220107	35223660	35220107	ID=MS.gene063003
chr4.2	mRNA	35220107	35223660	35220107	ID=MS.gene063003.t1;Parent=MS.gene063003
chr4.2	exon	35220107	35220248	35220107	ID=MS.gene063003.t1.exon1;Parent=MS.gene063003.t1
chr4.2	CDS	35220107	35220248	35220107	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35220437	35220510	35220437	ID=MS.gene063003.t1.exon2;Parent=MS.gene063003.t1
chr4.2	CDS	35220437	35220510	35220437	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35220597	35220691	35220597	ID=MS.gene063003.t1.exon3;Parent=MS.gene063003.t1
chr4.2	CDS	35220597	35220691	35220597	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35220795	35220910	35220795	ID=MS.gene063003.t1.exon4;Parent=MS.gene063003.t1
chr4.2	CDS	35220795	35220910	35220795	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35221283	35221765	35221283	ID=MS.gene063003.t1.exon5;Parent=MS.gene063003.t1
chr4.2	CDS	35221283	35221765	35221283	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35221942	35222190	35221942	ID=MS.gene063003.t1.exon6;Parent=MS.gene063003.t1
chr4.2	CDS	35221942	35222190	35221942	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35222289	35222452	35222289	ID=MS.gene063003.t1.exon7;Parent=MS.gene063003.t1
chr4.2	CDS	35222289	35222452	35222289	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35222664	35222891	35222664	ID=MS.gene063003.t1.exon8;Parent=MS.gene063003.t1
chr4.2	CDS	35222664	35222891	35222664	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35223090	35223239	35223090	ID=MS.gene063003.t1.exon9;Parent=MS.gene063003.t1
chr4.2	CDS	35223090	35223239	35223090	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1
chr4.2	exon	35223433	35223660	35223433	ID=MS.gene063003.t1.exon10;Parent=MS.gene063003.t1
chr4.2	CDS	35223433	35223660	35223433	ID=cds.MS.gene063003.t1;Parent=MS.gene063003.t1

Gene Sequence

>MS.gene063003

ATGACAGTTGAAAAGAGGTTTGTGTTGGTTGGGATTAGAATAGATAGCCATAGCAGACAGCTTCTCAATTGGGCTCTTGTTAAAGTTGCTGAACCTGGTGATTGTGTTATTGCTGTTCATGTAGTTAAAACTAAAAGCTCAGGTAAAGTTCAGGACTTCTATGTGCATGTTTGATATCATTGTGAGTTTGACATAATTACGGTGAGTCATCGCGGTTTTGCAGAACCGGATGACTCGTCGTGATTCTGTCAAACCTACTATGATTCGTTTTCCCCTTATGTATTGTAAATTTTGTGCTTCTTAGCAGTGAAATAAGTTATTTCAATGCAGATTATGTTTCTAAAAACAAGAGCCTAATAGATGGATATTTAGAGGTTTATGAAGGCTTGTGTGATGTGAAAAAGGTAAACCTTTTTTTTTTCCACCTTATTTTTGTTTTCTTTTCAATAATGGGGGTTGGGAAATATATGTTGATTGTTTGGATTTTTAGGTTGGTCTTTCTAGTCAAATCATAACGGGAAAGTCCATTAAAAATATCCTTGTTAGAGAAGCAAAAAACCAAGGTGCTTTGGCTCTAGTGGTAGGGTATGTGGAGATTGTATTTCAGAAAATTTTGTTATTTGGTTTTTATGGTTTGTTTTGCCTGGTTTGGTTCATTTAGAAGACTCAAAACATGTTTCAATTGCAGAGGTAAAGCTGCCACGGCTAAATATTGCGCCAAACGTCTTCCACCCACCACCAATGTTCTTGCCATCCAAGATTCAAGAATCGTCTTCGGGAGGTGCAATAATAAACGACCACCAGGTTCATATTTGTGCCCTTAATTAGGCTTAGGCCATGATTGGATAAACATTTTTATTCATCGCTTATAGCATAAGTGTCTATCATAGAAGTGCTTGTGTATAAGTTATTTCCACAACAAAGATAAAATAAAGTCAAAAAATTTCATATAAACTATATGTTGTTTTTATAAACTATGTTGAAGAGCTTATAGACATCTCTTAAATTGTTTTCATAAGTTCTATCAAGCCGGCTCACAGGTGCTTATGCTAGCTAGATAAGTTTTAATCAACCAATTCAAACATGCTCTAAATATCAGTCTTATAAAGAAGTTATATCATTAGTGAGTCGGTGGAAAAAGAAAGTATTGTAAAGTTTTGTTTCCATTCGTCACAGGTAGTCTTATATTGGATCCAAGACCAAGTTTAACAAGCATAGATAACCTGAGTGAGAAATCACCACACCAAAACACCAAGGAATCGAAAGAAGAAACATTTGACGGATCAGAAAGGCAAAAGTCACGATCGATATCCATGTTTGCAGACGATCCTTCGAAGCGGAAGCTTGGATGGCCTCTGCTCCGTAAATCGAATTCAGACATCTCACAAAGTCATCATGGAAGGGGTATTTCGGTAGTACAATGGGTAATGAGCTTACCAGATCGTTCACCACATAGTAGTCCTCAATCATCCTCCTCAGACGAAAATCCATTCGAGAGGAGCATAAGTGACATTCTTGAGGATGAGAGCTTCAAAAATCATTTACCTCCATCAGTTGTACTCCCAAAAGGCCTAGAGGGGATATTAAATGTAAATTCACTCAATTGCAAGTGGCTCAGCCTTGAGGCTCTCAAGTCTTGTACCAGTCAATTCTCTTCAGGTTGGAACTGTGATTCTTAATATCATTTTCCACGATCTTTAAATAAACTAGCATATCGTACTCGTGCAATCTGTTGATAAAAGATAGATGAAGACCATGTCATATGATGTAACGCAGATAATCAAACTGTGTTTTATTAATATTATAATACAATATAATCTTGTGTTTCATTGCAGAAAATTTGATTGGGAAAGGAGGGAGCAACCGTGTGTATAAAGGAATTCTCCCTGATGGAAAACCAATTGCAGTTAAAGTATTGCGATCATCAAACGAAGCATGGAAAGATTTTGCCTTTGAGATGGAAATAATATCCTCATTGAAGCACAAAAACATTACTCAATTACTTGGAATTTGCATAGAGGACAATACTTTAATATCTATTTATGAGTATTTCCCTAAAGGAAGCTTAGAGGAAAATCTACATGGTAAAAGTTTGAGTTCAGTTTCTGTTTTCACCTTTCAACCATCATATAAATTGTTGTAAATGGAAAAGATGCTTATATGAATTTATAAATGGATGCAGGAAAGAACAAGGATGGATCTCTTTTATCATGGGAAGTGAGATTTAATGTAGCTGTTGGAGTAGCTGAGGCTCTTGATTACCTACACACAGAAGCTTCGAAGCATGTCATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCAAGGAGCTTGAGCCACAAGTAATCAAATTTTTTGACATCGTTAACATTGAAATAACCATTTTGTAAAGAGAAATGATTTTTGGACAACCAAATTTAGACATCTTACAACTTTTTGAAAGTTGTCGAGACTAAATTTGGTTGATACGACTTTCAGTCAATCAAAGTAAAACATTATGTAGAAAATTGATTGTGTCACTCATGAATAATAATTTTGTCCTTTTTGTTGCAGTTGTCTGATTTTGGACTTGCAATATGGGGACCAACAACAACATCCTTTTTGACACAAGAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATATTTCATGTATGGAAAAGTTAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTACTACTTGAACTACTATCAGGTAGGGAACCAATCAGCTCTGAACCTTGCAAAGGACAGGAGAGCTTGGTAGCTTGGGTAAGACGTAACTTCAGTTAGAATAAATTTTTATTGAACCAATAAAATCTCCGAGTCACGATTCAGCTGTTTAAAATTGTTCGAACTGATACGAAATTGTGAGTTCAACTATCGGGTCCGATTTTTGAAATATTGATAAATATGCTTTTAGTGTAGAATGTATAAAATTTGAAGGATAAAAAATGACTTCATTTTCAGGCAAAACCAATAATAGAGAGTGGGGATATTAAAGGTTTGTTGGACCCAAAATTAGAAGGGAAGTTTGATGAGACTCAAATGAAAAGAATGGTTTTGGCAGCATCTTTATGCATCGCACGGGCTGCTAGACTTCGTCCTAAATTTAATCAGGTAATAACATTTTTTACACATGCATCCAATAATTTAATCGCAGTAATGGATAAATAGAACTTGTTTATGAAAATATCAAATAAATCTAATAATAAATTACAGTGAAGTTGTCAAATTTTCAATATGAAGTCACATTACCAATTATATATTTTGAAAACCTTCAGCTCCTAAAGTTTATCATTCCTATGTACAGATACTGAAGATCCTAAAAGGGAACAATGAAGATGAATATTGCTTCAATGAGTATTCAGAAAATGAAGAAAACATTGATGATGAAGTGTATCCAAATTCAAGTACAGAGTTACACCTATCTCTTGCATTACTTGGTGTTGATGATGACAGTACATCATGTAGTAGTACAGACCACAACTACAGTGAGAATTTGAAAGATCAATGGAGCATGTCTTTGAGTTTTAACTAG

Protein sequence

>MS.gene063003.t1

MTVEKRFVLVGIRIDSHSRQLLNWALVKVAEPGDCVIAVHVVKTKSSDYVSKNKSLIDGYLEVYEGLCDVKKVGLSSQIITGKSIKNILVREAKNQGALALVVGGKAATAKYCAKRLPPTTNVLAIQDSRIVFGRCNNKRPPGSLILDPRPSLTSIDNLSEKSPHQNTKESKEETFDGSERQKSRSISMFADDPSKRKLGWPLLRKSNSDISQSHHGRGISVVQWVMSLPDRSPHSSPQSSSSDENPFERSISDILEDESFKNHLPPSVVLPKGLEGILNVNSLNCKWLSLEALKSCTSQFSSENLIGKGGSNRVYKGILPDGKPIAVKVLRSSNEAWKDFAFEMEIISSLKHKNITQLLGICIEDNTLISIYEYFPKGSLEENLHGKNKDGSLLSWEVRFNVAVGVAEALDYLHTEASKHVIHRDVKSSNILLSKELEPQLSDFGLAIWGPTTTSFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELLSGREPISSEPCKGQESLVAWAKPIIESGDIKGLLDPKLEGKFDETQMKRMVLAASLCIARAARLRPKFNQILKILKGNNEDEYCFNEYSENEENIDDEVYPNSSTELHLSLALLGVDDDSTSCSSTDHNYSENLKDQWSMSLSFN