Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06418.t1 | XP_003613143.1 | 87.8 | 319 | 39 | 0 | 1 | 319 | 64 | 382 | 3.80E-159 | 570.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06418.t1 | Q9FVQ0 | 52.4 | 315 | 150 | 0 | 1 | 315 | 63 | 377 | 3.3e-95 | 349.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06418.t1 | G7JYZ1 | 87.8 | 319 | 39 | 0 | 1 | 319 | 64 | 382 | 2.8e-159 | 570.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94810 | MS.gene06418 | PPI |
| MS.gene014685 | MS.gene06418 | PPI |
| MS.gene061851 | MS.gene06418 | PPI |
| MS.gene038029 | MS.gene06418 | PPI |
| MS.gene32792 | MS.gene06418 | PPI |
| MS.gene64265 | MS.gene06418 | PPI |
| MS.gene064951 | MS.gene06418 | PPI |
| MS.gene56048 | MS.gene06418 | PPI |
| MS.gene09884 | MS.gene06418 | PPI |
| MS.gene031178 | MS.gene06418 | PPI |
| MS.gene021474 | MS.gene06418 | PPI |
| MS.gene06418 | MS.gene064951 | PPI |
| MS.gene40340 | MS.gene06418 | PPI |
| MS.gene61665 | MS.gene06418 | PPI |
| MS.gene24021 | MS.gene06418 | PPI |
| MS.gene059136 | MS.gene06418 | PPI |
| MS.gene059027 | MS.gene06418 | PPI |
| MS.gene018590 | MS.gene06418 | PPI |
| MS.gene23537 | MS.gene06418 | PPI |
| MS.gene53594 | MS.gene06418 | PPI |
| MS.gene31616 | MS.gene06418 | PPI |
| MS.gene51580 | MS.gene06418 | PPI |
| MS.gene60245 | MS.gene06418 | PPI |
| MS.gene015953 | MS.gene06418 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06418.t1 | MTR_5g033260 | 87.774 | 319 | 39 | 0 | 1 | 319 | 64 | 382 | 0.0 | 575 |
| MS.gene06418.t1 | MTR_8g432640 | 82.759 | 319 | 55 | 0 | 1 | 319 | 64 | 382 | 0.0 | 558 |
| MS.gene06418.t1 | MTR_7g107690 | 48.254 | 315 | 163 | 0 | 2 | 316 | 67 | 381 | 1.34e-112 | 331 |
| MS.gene06418.t1 | MTR_3g088925 | 48.265 | 317 | 162 | 2 | 1 | 316 | 65 | 380 | 4.87e-108 | 320 |
| MS.gene06418.t1 | MTR_7g107710 | 48.589 | 319 | 162 | 2 | 1 | 318 | 64 | 381 | 6.57e-107 | 317 |
| MS.gene06418.t1 | MTR_3g088945 | 47.634 | 317 | 164 | 2 | 1 | 316 | 65 | 380 | 1.48e-106 | 316 |
| MS.gene06418.t1 | MTR_4g051642 | 49.527 | 317 | 157 | 3 | 1 | 316 | 65 | 379 | 2.72e-106 | 316 |
| MS.gene06418.t1 | MTR_3g088955 | 47.003 | 317 | 166 | 2 | 1 | 316 | 65 | 380 | 1.81e-104 | 311 |
| MS.gene06418.t1 | MTR_3g109520 | 44.375 | 320 | 172 | 2 | 1 | 315 | 97 | 415 | 1.09e-93 | 285 |
| MS.gene06418.t1 | MTR_1g008380 | 42.947 | 319 | 175 | 3 | 1 | 314 | 100 | 416 | 3.03e-90 | 276 |
| MS.gene06418.t1 | MTR_1g069275 | 45.625 | 320 | 164 | 5 | 1 | 314 | 83 | 398 | 6.72e-90 | 275 |
| MS.gene06418.t1 | MTR_1g046230 | 44.860 | 321 | 168 | 5 | 1 | 314 | 82 | 400 | 2.34e-88 | 271 |
| MS.gene06418.t1 | MTR_6g086870 | 42.724 | 323 | 174 | 4 | 1 | 314 | 78 | 398 | 4.57e-87 | 267 |
| MS.gene06418.t1 | MTR_7g099330 | 45.000 | 320 | 162 | 5 | 1 | 314 | 82 | 393 | 7.40e-87 | 267 |
| MS.gene06418.t1 | MTR_1g011630 | 43.849 | 317 | 167 | 5 | 1 | 312 | 74 | 384 | 2.92e-86 | 265 |
| MS.gene06418.t1 | MTR_7g099160 | 44.918 | 305 | 154 | 5 | 15 | 313 | 217 | 513 | 5.44e-81 | 255 |
| MS.gene06418.t1 | MTR_3g096030 | 86.607 | 112 | 15 | 0 | 8 | 119 | 47 | 158 | 2.42e-65 | 203 |
| MS.gene06418.t1 | MTR_3g096020 | 61.062 | 113 | 6 | 3 | 149 | 260 | 1 | 76 | 5.40e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06418.t1 | AT1G48910 | 52.381 | 315 | 150 | 0 | 1 | 315 | 63 | 377 | 5.12e-120 | 350 |
| MS.gene06418.t1 | AT1G21430 | 48.580 | 317 | 158 | 4 | 1 | 315 | 67 | 380 | 4.78e-101 | 302 |
| MS.gene06418.t1 | AT1G04610 | 46.226 | 318 | 161 | 5 | 2 | 311 | 96 | 411 | 2.84e-95 | 289 |
| MS.gene06418.t1 | AT5G25620 | 45.171 | 321 | 166 | 5 | 1 | 314 | 90 | 407 | 6.40e-93 | 282 |
| MS.gene06418.t1 | AT5G25620 | 45.171 | 321 | 166 | 5 | 1 | 314 | 90 | 407 | 8.79e-93 | 283 |
| MS.gene06418.t1 | AT5G11320 | 43.849 | 317 | 165 | 4 | 1 | 312 | 75 | 383 | 1.47e-87 | 268 |
| MS.gene06418.t1 | AT5G43890 | 44.654 | 318 | 167 | 5 | 1 | 311 | 83 | 398 | 3.81e-87 | 268 |
| MS.gene06418.t1 | AT4G13260 | 42.902 | 317 | 175 | 2 | 1 | 312 | 86 | 401 | 1.16e-86 | 266 |
| MS.gene06418.t1 | AT1G04180 | 43.218 | 317 | 170 | 5 | 1 | 311 | 83 | 395 | 4.39e-86 | 265 |
| MS.gene06418.t1 | AT4G32540 | 43.548 | 310 | 162 | 5 | 8 | 311 | 86 | 388 | 7.64e-86 | 264 |
| MS.gene06418.t1 | AT4G32540 | 43.730 | 311 | 162 | 5 | 8 | 311 | 86 | 390 | 8.45e-86 | 264 |
| MS.gene06418.t1 | AT4G28720 | 42.813 | 327 | 177 | 6 | 1 | 319 | 83 | 407 | 1.75e-85 | 263 |
| MS.gene06418.t1 | AT2G33230 | 42.857 | 322 | 173 | 5 | 1 | 314 | 90 | 408 | 8.12e-82 | 254 |
| MS.gene06418.t1 | AT4G13260 | 41.724 | 290 | 163 | 2 | 27 | 311 | 9 | 297 | 9.12e-74 | 230 |
| MS.gene06418.t1 | AT5G11320 | 43.233 | 266 | 139 | 3 | 1 | 261 | 75 | 333 | 2.05e-69 | 220 |
| MS.gene06418.t1 | AT4G13260 | 44.444 | 225 | 120 | 1 | 1 | 220 | 86 | 310 | 5.29e-63 | 202 |
Find 79 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTATGATCTCTATAAT+TGG | 0.192502 | 3.2:-80212993 | MS.gene06418:CDS |
| CGGTATTTATCGTCCCAAAT+TGG | 0.220274 | 3.2:-80211314 | MS.gene06418:CDS |
| AATTATGCAGATTAAGAGTT+TGG | 0.267840 | 3.2:+80210494 | None:intergenic |
| GTATTGAAGGAATTGGTCTT+TGG | 0.306079 | 3.2:+80213326 | None:intergenic |
| AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 3.2:+80213351 | None:intergenic |
| TGCTTATGATCTCTATAATT+GGG | 0.311048 | 3.2:-80212992 | MS.gene06418:CDS |
| ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 3.2:-80213046 | MS.gene06418:CDS |
| GAGTTGTAAAGGTCCCAATT+TGG | 0.331158 | 3.2:+80211300 | None:intergenic |
| AGTTGTAAAGGTCCCAATTT+GGG | 0.358601 | 3.2:+80211301 | None:intergenic |
| TGTCTATGTATTGAAGGAAT+TGG | 0.360875 | 3.2:+80213319 | None:intergenic |
| CACTCAAAATACTACAAATC+TGG | 0.376434 | 3.2:-80213075 | MS.gene06418:CDS |
| GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 3.2:+80213357 | None:intergenic |
| TTATCCAGTCCAGGCACATT+AGG | 0.388569 | 3.2:+80213117 | None:intergenic |
| AATTAAAGAGGGATCTATAA+AGG | 0.391104 | 3.2:-80211227 | MS.gene06418:intron |
| GTCTATTGTCGTTCGAAGTC+CGG | 0.391484 | 3.2:-80212959 | MS.gene06418:intron |
| GGTATTTATCGTCCCAAATT+GGG | 0.412423 | 3.2:-80211313 | MS.gene06418:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 3.2:+80213313 | None:intergenic |
| GGTCTTTGGATAGGTAGGTT+GGG | 0.424128 | 3.2:+80213340 | None:intergenic |
| CATAGCTCATGGGTGGCTTA+AGG | 0.432624 | 3.2:-80210841 | MS.gene06418:intron |
| CTCATGCCTCACCCACCCTC+AGG | 0.439321 | 3.2:-80213363 | MS.gene06418:CDS |
| GGGACGATAAATACCGTACT+TGG | 0.439663 | 3.2:+80211321 | None:intergenic |
| AGGAACATTGGAAGTTTATG+AGG | 0.446242 | 3.2:-80213187 | MS.gene06418:CDS |
| ACTAGCAAGGAGAGGCTTGT+GGG | 0.449924 | 3.2:-80210557 | MS.gene06418:CDS |
| TGGTCTTTGGATAGGTAGGT+TGG | 0.458799 | 3.2:+80213339 | None:intergenic |
| GCGAATGGTGAATTATTTGC+CGG | 0.460895 | 3.2:-80211401 | MS.gene06418:CDS |
| TATTCCTAATGTGCCTGGAC+TGG | 0.461163 | 3.2:-80213121 | MS.gene06418:CDS |
| GAATTGGTCTTTGGATAGGT+AGG | 0.465992 | 3.2:+80213335 | None:intergenic |
| GGATAGGTAGGTTGGGCCTG+AGG | 0.466487 | 3.2:+80213347 | None:intergenic |
| ATGATGAAGTTAGAGACAAA+TGG | 0.467665 | 3.2:-80213236 | MS.gene06418:CDS |
| AAATATGCTCTCAATGAGAA+AGG | 0.471673 | 3.2:-80210640 | MS.gene06418:CDS |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 3.2:-80213126 | MS.gene06418:CDS |
| GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 3.2:+80213348 | None:intergenic |
| AAGCTTCTTGTGGTCGCCAC+CGG | 0.491235 | 3.2:-80213162 | MS.gene06418:CDS |
| ATAGCATCCACAACATCAAC+CGG | 0.492553 | 3.2:+80211382 | None:intergenic |
| GATGCAATCGTATTCGCGAC+TGG | 0.499555 | 3.2:-80210873 | MS.gene06418:CDS |
| GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 3.2:+80213352 | None:intergenic |
| AGGCTTGTGGGGAGTCAAGA+TGG | 0.506541 | 3.2:-80210545 | MS.gene06418:CDS |
| GAAGGAATTGGTCTTTGGAT+AGG | 0.509607 | 3.2:+80213331 | None:intergenic |
| AAGTCTGCAGTTATTGATGT+TGG | 0.511414 | 3.2:-80211262 | MS.gene06418:CDS |
| AATATGCTCTCAATGAGAAA+GGG | 0.511763 | 3.2:-80210639 | MS.gene06418:CDS |
| AAAATGCTTACCCGAGCCAT+TGG | 0.511789 | 3.2:-80210609 | MS.gene06418:CDS |
| CCTGGACTGGATAACTTTGA+AGG | 0.516577 | 3.2:-80213108 | MS.gene06418:CDS |
| TTATTTGCCGGTTGATGTTG+TGG | 0.517505 | 3.2:-80211389 | MS.gene06418:CDS |
| GTCACGTTCTTGAGTTGTAA+AGG | 0.520118 | 3.2:+80211289 | None:intergenic |
| TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 3.2:-80213052 | MS.gene06418:CDS |
| TCAATTCTCGTAATATCTGA+AGG | 0.531023 | 3.2:+80210939 | None:intergenic |
| GAAACAAAGAACACTAAAGA+AGG | 0.532498 | 3.2:-80213207 | MS.gene06418:CDS |
| TTACAACTCAAGAACGTGAC+AGG | 0.534326 | 3.2:-80211286 | MS.gene06418:CDS |
| TGCTTACCCGAGCCATTGGA+AGG | 0.540363 | 3.2:-80210605 | MS.gene06418:CDS |
| TACGGTGATCTGTCCAAGTA+CGG | 0.541244 | 3.2:-80211334 | MS.gene06418:CDS |
| CCTTCAAAGTTATCCAGTCC+AGG | 0.541905 | 3.2:+80213108 | None:intergenic |
| GAACACTAAAGAAGGAACAT+TGG | 0.544778 | 3.2:-80213199 | MS.gene06418:CDS |
| GACTAGCAAGGAGAGGCTTG+TGG | 0.559365 | 3.2:-80210558 | MS.gene06418:CDS |
| GCTTATGATCTCTATAATTG+GGG | 0.559964 | 3.2:-80212991 | MS.gene06418:CDS |
| CTTACCCGAGCCATTGGAAG+GGG | 0.560574 | 3.2:-80210603 | MS.gene06418:CDS |
| GGACTTCGAACGACAATAGA+CGG | 0.563490 | 3.2:+80212961 | None:intergenic |
| GATCATGGATTATACTGCGC+AGG | 0.573202 | 3.2:-80210580 | MS.gene06418:CDS |
| GGATACAAAAGCATAGCTCA+TGG | 0.579034 | 3.2:-80210852 | MS.gene06418:CDS |
| TGGGAGTGGTAACTCAGGAA+TGG | 0.579719 | 3.2:-80213019 | MS.gene06418:CDS |
| AATAGAGAAATGATTCGTCA+AGG | 0.580272 | 3.2:-80211427 | MS.gene06418:CDS |
| TTATGAGGCAAAGCTTCTTG+TGG | 0.587741 | 3.2:-80213172 | MS.gene06418:CDS |
| CTAGCAAGGAGAGGCTTGTG+GGG | 0.590569 | 3.2:-80210556 | MS.gene06418:CDS |
| ATAGAGAAATGATTCGTCAA+GGG | 0.595594 | 3.2:-80211426 | MS.gene06418:CDS |
| GCTTACCCGAGCCATTGGAA+GGG | 0.611153 | 3.2:-80210604 | MS.gene06418:CDS |
| GATACAAAAGCATAGCTCAT+GGG | 0.613114 | 3.2:-80210851 | MS.gene06418:CDS |
| GTAGTTGGGAGTGGTAACTC+AGG | 0.620564 | 3.2:-80213024 | MS.gene06418:CDS |
| TATACTGCGCAGGACTAGCA+AGG | 0.623691 | 3.2:-80210570 | MS.gene06418:CDS |
| AGTTGTATTTGGAAACAACA+TGG | 0.629375 | 3.2:-80210907 | MS.gene06418:CDS |
| ACTGGATAACTTTGAAGGAG+AGG | 0.632240 | 3.2:-80213103 | MS.gene06418:CDS |
| GACTTCGAACGACAATAGAC+GGG | 0.636542 | 3.2:+80212962 | None:intergenic |
| GGATAACTTTGAAGGAGAGG+TGG | 0.646286 | 3.2:-80213100 | MS.gene06418:CDS |
| ATGAAGTTAGAGACAAATGG+AGG | 0.649410 | 3.2:-80213233 | MS.gene06418:CDS |
| TGCGCAGGACTAGCAAGGAG+AGG | 0.654870 | 3.2:-80210565 | MS.gene06418:CDS |
| GGATGCAGAGTCAATTGCAG+AGG | 0.658304 | 3.2:-80210524 | MS.gene06418:CDS |
| GCCACCGGTGAAAATAGTGA+AGG | 0.667655 | 3.2:-80213147 | MS.gene06418:CDS |
| GATTCGTCAAGGGATGCGAA+TGG | 0.671019 | 3.2:-80211416 | MS.gene06418:CDS |
| ACAAAAGCATAGCTCATGGG+TGG | 0.672473 | 3.2:-80210848 | MS.gene06418:CDS |
| TTACCCGAGCCATTGGAAGG+GGG | 0.715554 | 3.2:-80210602 | MS.gene06418:CDS |
| TCAACTGTGCGACAATAACG+AGG | 0.715629 | 3.2:+80213270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3.2:80211644-80211663 | MS.gene06418:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3.2:80211643-80211662 | MS.gene06418:intron | 10.0% |
| !!! | TATTTTATGTATTTTTTCAA+AGG | - | chr3.2:80213184-80213203 | MS.gene06418:CDS | 10.0% |
| !! | AAAATGTATGTATATTGTAA+TGG | + | chr3.2:80213083-80213102 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr3.2:80211608-80211627 | None:intergenic | 15.0% |
| !! | AATGAGACATTAAATAAATA+AGG | - | chr3.2:80211859-80211878 | MS.gene06418:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3.2:80211645-80211664 | MS.gene06418:intron | 15.0% |
| !! | TAGAGAATTATAATGAATAT+GGG | + | chr3.2:80213150-80213169 | None:intergenic | 15.0% |
| !! | TTAGAGAATTATAATGAATA+TGG | + | chr3.2:80213151-80213170 | None:intergenic | 15.0% |
| !!! | TAACTATCTTTAAGATTTTA+AGG | - | chr3.2:80212121-80212140 | MS.gene06418:intron | 15.0% |
| !!! | TAATGAAAATATGTATTTTG+TGG | - | chr3.2:80212359-80212378 | MS.gene06418:intron | 15.0% |
| !! | AGAGAATTATAATGAATATG+GGG | + | chr3.2:80213149-80213168 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3.2:80212019-80212038 | MS.gene06418:intron | 20.0% |
| !! | ATACGTCATAATTAAGATAA+AGG | - | chr3.2:80213035-80213054 | MS.gene06418:CDS | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr3.2:80211609-80211628 | None:intergenic | 20.0% |
| !! | CTTCTCTCAAAAAAAAAAAA+AGG | + | chr3.2:80211519-80211538 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr3.2:80212020-80212039 | MS.gene06418:intron | 20.0% |
| !! | TACGTCATAATTAAGATAAA+GGG | - | chr3.2:80213036-80213055 | MS.gene06418:CDS | 20.0% |
| !! | TAGTAGTGTTATATTGTATT+GGG | - | chr3.2:80211987-80212006 | MS.gene06418:intron | 20.0% |
| !! | TATTAATACCATGTTTATGT+AGG | - | chr3.2:80212660-80212679 | MS.gene06418:intron | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr3.2:80211956-80211975 | MS.gene06418:intron | 20.0% |
| !! | TTCAAAATATGAATCAAAAG+AGG | - | chr3.2:80210800-80210819 | MS.gene06418:intron | 20.0% |
| !!! | ATTACCCTTATTTATTAATG+TGG | - | chr3.2:80211818-80211837 | MS.gene06418:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+TGG | - | chr3.2:80212056-80212075 | MS.gene06418:intron | 20.0% |
| !!! | TCAATTGAATGGTTTTAATA+TGG | + | chr3.2:80212198-80212217 | None:intergenic | 20.0% |
| ! | AACCATCGAAAAAATTAAAG+AGG | - | chr3.2:80212613-80212632 | MS.gene06418:intron | 25.0% |
| ! | AATTAAAGAGGGATCTATAA+AGG | - | chr3.2:80212625-80212644 | MS.gene06418:intron | 25.0% |
| ! | AATTATGCAGATTAAGAGTT+TGG | + | chr3.2:80213361-80213380 | None:intergenic | 25.0% |
| ! | ACCATCGAAAAAATTAAAGA+GGG | - | chr3.2:80212614-80212633 | MS.gene06418:intron | 25.0% |
| ! | ATGTAAAGTGACACTTAAAT+AGG | + | chr3.2:80211764-80211783 | None:intergenic | 25.0% |
| ! | ATGTGACAATTAAAAAGGAA+CGG | - | chr3.2:80211961-80211980 | MS.gene06418:intron | 25.0% |
| ! | ATTAATCACCTACATAAACA+TGG | + | chr3.2:80212671-80212690 | None:intergenic | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | + | chr3.2:80210542-80210561 | None:intergenic | 25.0% |
| ! | CTCTCCACATTAATAAATAA+GGG | + | chr3.2:80211825-80211844 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAAGTTGTATT+TGG | - | chr3.2:80212934-80212953 | MS.gene06418:intron | 25.0% |
| ! | GCTATGTTAACTATCTTTAA+GGG | - | chr3.2:80211417-80211436 | MS.gene06418:CDS | 25.0% |
| ! | GTAGTAGTGTTATATTGTAT+TGG | - | chr3.2:80211986-80212005 | MS.gene06418:intron | 25.0% |
| ! | TCTCTCCACATTAATAAATA+AGG | + | chr3.2:80211826-80211845 | None:intergenic | 25.0% |
| ! | TGCTATGTTAACTATCTTTA+AGG | - | chr3.2:80211416-80211435 | MS.gene06418:CDS | 25.0% |
| ! | TGCTTATGATCTCTATAATT+GGG | - | chr3.2:80210860-80210879 | MS.gene06418:CDS | 25.0% |
| ! | TTATGGATATCTATCTAGAT+AGG | + | chr3.2:80211366-80211385 | None:intergenic | 25.0% |
| ! | TTGCTTATGATCTCTATAAT+TGG | - | chr3.2:80210859-80210878 | MS.gene06418:CDS | 25.0% |
| ! | TTGTATACCTAAAAAGAGTA+AGG | - | chr3.2:80210980-80210999 | MS.gene06418:intron | 25.0% |
| ! | TTTATAGTTGAAAATGACAG+TGG | - | chr3.2:80212236-80212255 | MS.gene06418:intron | 25.0% |
| !! | ATATGAATCAAAAGAGGTTT+TGG | - | chr3.2:80210806-80210825 | MS.gene06418:intron | 25.0% |
| !! | TAACTATCTTTAAGGGTTTA+GGG | - | chr3.2:80211424-80211443 | MS.gene06418:CDS | 25.0% |
| !! | TTAACTATCTTTAAGGGTTT+AGG | - | chr3.2:80211423-80211442 | MS.gene06418:CDS | 25.0% |
| !! | TTTGTATCCTTACTCTTTTT+AGG | + | chr3.2:80210990-80211009 | None:intergenic | 25.0% |
| !! | TTTTCGGCAAAACTAAAATA+CGG | - | chr3.2:80212500-80212519 | MS.gene06418:intron | 25.0% |
| !! | TTTTGCATGTGTTTATTCAT+TGG | - | chr3.2:80213115-80213134 | MS.gene06418:CDS | 25.0% |
| !!! | AACGAGGTTTTATGTTAAAA+TGG | + | chr3.2:80210569-80210588 | None:intergenic | 25.0% |
| AAAGCTGAATTCCATTATGT+TGG | - | chr3.2:80212264-80212283 | MS.gene06418:intron | 30.0% | |
| AAATATGCTCTCAATGAGAA+AGG | - | chr3.2:80213212-80213231 | MS.gene06418:CDS | 30.0% | |
| AACTCACAACACTTTCATTA+AGG | - | chr3.2:80212847-80212866 | MS.gene06418:intron | 30.0% | |
| AAGTGACACTTAAAAAGGAA+CGG | + | chr3.2:80211723-80211742 | None:intergenic | 30.0% | |
| AATAGAGAAATGATTCGTCA+AGG | - | chr3.2:80212425-80212444 | MS.gene06418:intron | 30.0% | |
| AATATGCTCTCAATGAGAAA+GGG | - | chr3.2:80213213-80213232 | MS.gene06418:CDS | 30.0% | |
| AGAAAATTGGTCAGTTATTC+CGG | - | chr3.2:80212069-80212088 | MS.gene06418:intron | 30.0% | |
| AGTTGTATTTGGAAACAACA+TGG | - | chr3.2:80212945-80212964 | MS.gene06418:intron | 30.0% | |
| ATAGAGAAATGATTCGTCAA+GGG | - | chr3.2:80212426-80212445 | MS.gene06418:intron | 30.0% | |
| ATGATGAAGTTAGAGACAAA+TGG | - | chr3.2:80210616-80210635 | MS.gene06418:CDS | 30.0% | |
| CACTCAAAATACTACAAATC+TGG | - | chr3.2:80210777-80210796 | MS.gene06418:intron | 30.0% | |
| CATTGATATGTCGAAAGTTA+TGG | + | chr3.2:80211383-80211402 | None:intergenic | 30.0% | |
| GAAACAAAGAACACTAAAGA+AGG | - | chr3.2:80210645-80210664 | MS.gene06418:CDS | 30.0% | |
| GAGTTAGAAATGTTCTTTAC+CGG | + | chr3.2:80210915-80210934 | None:intergenic | 30.0% | |
| GCTTATGATCTCTATAATTG+GGG | - | chr3.2:80210861-80210880 | MS.gene06418:CDS | 30.0% | |
| GTCATAATTAAGATAAAGGG+AGG | - | chr3.2:80213039-80213058 | MS.gene06418:CDS | 30.0% | |
| TCAATTCTCGTAATATCTGA+AGG | + | chr3.2:80212916-80212935 | None:intergenic | 30.0% | |
| TCCAAAAGTGACACTTAAAA+AGG | + | chr3.2:80211728-80211747 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3.2:80211652-80211671 | MS.gene06418:intron | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | + | chr3.2:80210536-80210555 | None:intergenic | 30.0% | |
| TTATAGATGTCTAGCTAGAT+AGG | + | chr3.2:80211553-80211572 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr3.2:80211604-80211623 | None:intergenic | 30.0% | |
| ! | ATAACCTTCACTATTTTCAC+CGG | + | chr3.2:80210712-80210731 | None:intergenic | 30.0% |
| ! | ATAATGGAATTCAGCTTTAC+AGG | + | chr3.2:80212262-80212281 | None:intergenic | 30.0% |
| ! | GCAACATTTATTGATTGTCT+TGG | - | chr3.2:80211920-80211939 | MS.gene06418:intron | 30.0% |
| ! | TACTGCACTTTTCAATTGAA+TGG | + | chr3.2:80212209-80212228 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr3.2:80212033-80212052 | MS.gene06418:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr3.2:80212034-80212053 | MS.gene06418:intron | 30.0% |
| !!! | ATTTTAAGGTGCTTCTAACA+TGG | - | chr3.2:80212135-80212154 | MS.gene06418:intron | 30.0% |
| !!! | GGATGCTATCATTACTTTTT+CGG | - | chr3.2:80212484-80212503 | MS.gene06418:intron | 30.0% |
| !!! | TCCCTCTTTAATTTTTTCGA+TGG | + | chr3.2:80212618-80212637 | None:intergenic | 30.0% |
| !!! | TCCTTTTTAAGTGTCACTTT+TGG | - | chr3.2:80211724-80211743 | MS.gene06418:intron | 30.0% |
| AAGTCTGCAGTTATTGATGT+TGG | - | chr3.2:80212590-80212609 | MS.gene06418:intron | 35.0% | |
| AGGAACATTGGAAGTTTATG+AGG | - | chr3.2:80210665-80210684 | MS.gene06418:intron | 35.0% | |
| AGTTGTAAAGGTCCCAATTT+GGG | + | chr3.2:80212554-80212573 | None:intergenic | 35.0% | |
| ATGAAGTTAGAGACAAATGG+AGG | - | chr3.2:80210619-80210638 | MS.gene06418:CDS | 35.0% | |
| CTCTATTGAAGACATGAAAC+TGG | + | chr3.2:80212412-80212431 | None:intergenic | 35.0% | |
| GAAAATTGGTCAGTTATTCC+GGG | - | chr3.2:80212070-80212089 | MS.gene06418:intron | 35.0% | |
| GAACACTAAAGAAGGAACAT+TGG | - | chr3.2:80210653-80210672 | MS.gene06418:intron | 35.0% | |
| GGTATTTATCGTCCCAAATT+GGG | - | chr3.2:80212539-80212558 | MS.gene06418:intron | 35.0% | |
| GTATGAGTGTGACATAACTT+TGG | - | chr3.2:80212869-80212888 | MS.gene06418:intron | 35.0% | |
| GTGTGACATAACTTTGGATT+TGG | - | chr3.2:80212875-80212894 | MS.gene06418:intron | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr3.2:80211964-80211983 | MS.gene06418:intron | 35.0% | |
| ! | GATACAAAAGCATAGCTCAT+GGG | - | chr3.2:80213001-80213020 | MS.gene06418:CDS | 35.0% |
| !! | CAAAAGAGGTTTTGGTAGTT+GGG | - | chr3.2:80210814-80210833 | MS.gene06418:intron | 35.0% |
| !! | GTATTGAAGGAATTGGTCTT+TGG | + | chr3.2:80210529-80210548 | None:intergenic | 35.0% |
| !! | TCAAAAGAGGTTTTGGTAGT+TGG | - | chr3.2:80210813-80210832 | MS.gene06418:intron | 35.0% |
| ACTTTGGATTTGGATGTCAC+AGG | - | chr3.2:80212885-80212904 | MS.gene06418:intron | 40.0% | |
| ATAGCATCCACAACATCAAC+CGG | + | chr3.2:80212473-80212492 | None:intergenic | 40.0% | |
| CAACTATCGAGCCAACATAA+TGG | + | chr3.2:80212278-80212297 | None:intergenic | 40.0% | |
| CGGTATTTATCGTCCCAAAT+TGG | - | chr3.2:80212538-80212557 | MS.gene06418:intron | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | chr3.2:80211719-80211738 | None:intergenic | 40.0% | |
| GAGTTGTAAAGGTCCCAATT+TGG | + | chr3.2:80212555-80212574 | None:intergenic | 40.0% | |
| GCGAATGGTGAATTATTTGC+CGG | - | chr3.2:80212451-80212470 | MS.gene06418:intron | 40.0% | |
| GCTTCTAACATGGAAAAGTG+CGG | - | chr3.2:80212145-80212164 | MS.gene06418:intron | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | - | chr3.2:80210726-80210745 | MS.gene06418:intron | 40.0% | |
| TGACACTTAAAAAGGAACGG+AGG | + | chr3.2:80211720-80211739 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr3.2:80211601-80211620 | None:intergenic | 40.0% | |
| TTACAACTCAAGAACGTGAC+AGG | - | chr3.2:80212566-80212585 | MS.gene06418:intron | 40.0% | |
| TTATGAGGCAAAGCTTCTTG+TGG | - | chr3.2:80210680-80210699 | MS.gene06418:intron | 40.0% | |
| ! | ACTGGATAACTTTGAAGGAG+AGG | - | chr3.2:80210749-80210768 | MS.gene06418:intron | 40.0% |
| ! | GGATACAAAAGCATAGCTCA+TGG | - | chr3.2:80213000-80213019 | MS.gene06418:CDS | 40.0% |
| ! | GTCACGTTCTTGAGTTGTAA+AGG | + | chr3.2:80212566-80212585 | None:intergenic | 40.0% |
| ! | TTATTTGCCGGTTGATGTTG+TGG | - | chr3.2:80212463-80212482 | MS.gene06418:intron | 40.0% |
| !! | ACGGAGGGAGTACAATATTT+TGG | - | chr3.2:80212093-80212112 | MS.gene06418:intron | 40.0% |
| !! | GAAGGAATTGGTCTTTGGAT+AGG | + | chr3.2:80210524-80210543 | None:intergenic | 40.0% |
| !! | GAATTGGTCTTTGGATAGGT+AGG | + | chr3.2:80210520-80210539 | None:intergenic | 40.0% |
| AAAATGCTTACCCGAGCCAT+TGG | - | chr3.2:80213243-80213262 | MS.gene06418:CDS | 45.0% | |
| ATTGGTCAGTTATTCCGGGA+CGG | - | chr3.2:80212074-80212093 | MS.gene06418:intron | 45.0% | |
| CCTTCAAAGTTATCCAGTCC+AGG | + | chr3.2:80210747-80210766 | None:intergenic | 45.0% | |
| GACTTCGAACGACAATAGAC+GGG | + | chr3.2:80210893-80210912 | None:intergenic | 45.0% | |
| GGACTTCGAACGACAATAGA+CGG | + | chr3.2:80210894-80210913 | None:intergenic | 45.0% | |
| GGGACGATAAATACCGTACT+TGG | + | chr3.2:80212534-80212553 | None:intergenic | 45.0% | |
| GGTCTTTGGATAGGTAGGTT+GGG | + | chr3.2:80210515-80210534 | None:intergenic | 45.0% | |
| GTCTATTGTCGTTCGAAGTC+CGG | - | chr3.2:80210893-80210912 | MS.gene06418:CDS | 45.0% | |
| TACGGTGATCTGTCCAAGTA+CGG | - | chr3.2:80212518-80212537 | MS.gene06418:intron | 45.0% | |
| TATTCCTAATGTGCCTGGAC+TGG | - | chr3.2:80210731-80210750 | MS.gene06418:intron | 45.0% | |
| TCAACTGTGCGACAATAACG+AGG | + | chr3.2:80210585-80210604 | None:intergenic | 45.0% | |
| TGGTCTTTGGATAGGTAGGT+TGG | + | chr3.2:80210516-80210535 | None:intergenic | 45.0% | |
| TTATCCAGTCCAGGCACATT+AGG | + | chr3.2:80210738-80210757 | None:intergenic | 45.0% | |
| ! | ACAAAAGCATAGCTCATGGG+TGG | - | chr3.2:80213004-80213023 | MS.gene06418:CDS | 45.0% |
| ! | ACCTTCACTATTTTCACCGG+TGG | + | chr3.2:80210709-80210728 | None:intergenic | 45.0% |
| ! | CCTGGACTGGATAACTTTGA+AGG | - | chr3.2:80210744-80210763 | MS.gene06418:intron | 45.0% |
| ! | GATCATGGATTATACTGCGC+AGG | - | chr3.2:80213272-80213291 | MS.gene06418:CDS | 45.0% |
| ! | GGATAACTTTGAAGGAGAGG+TGG | - | chr3.2:80210752-80210771 | MS.gene06418:intron | 45.0% |
| ! | GGTTTAGGGTGCTTCTAACA+TGG | - | chr3.2:80211438-80211457 | MS.gene06418:CDS | 45.0% |
| !!! | TGGCTCGGGTAAGCATTTTT+TGG | + | chr3.2:80213242-80213261 | None:intergenic | 45.0% |
| !! | TTTATTTAAAAATTTAATGA+CGG | - | chr3.2:80211080-80211099 | MS.gene06418:intron | 5.0% |
| ACTAGCAAGGAGAGGCTTGT+GGG | - | chr3.2:80213295-80213314 | MS.gene06418:CDS | 50.0% | |
| ATATTGTACTCCCTCCGTCC+CGG | + | chr3.2:80212091-80212110 | None:intergenic | 50.0% | |
| ATCCATGATCCCCCTTCCAA+TGG | + | chr3.2:80213262-80213281 | None:intergenic | 50.0% | |
| CATAGCTCATGGGTGGCTTA+AGG | - | chr3.2:80213011-80213030 | MS.gene06418:CDS | 50.0% | |
| GATGCAATCGTATTCGCGAC+TGG | - | chr3.2:80212979-80212998 | MS.gene06418:CDS | 50.0% | |
| GATTCGTCAAGGGATGCGAA+TGG | - | chr3.2:80212436-80212455 | MS.gene06418:intron | 50.0% | |
| GCCACCGGTGAAAATAGTGA+AGG | - | chr3.2:80210705-80210724 | MS.gene06418:intron | 50.0% | |
| GGATGCAGAGTCAATTGCAG+AGG | - | chr3.2:80213328-80213347 | MS.gene06418:CDS | 50.0% | |
| GTAGTTGGGAGTGGTAACTC+AGG | - | chr3.2:80210828-80210847 | MS.gene06418:intron | 50.0% | |
| TGGGAGTGGTAACTCAGGAA+TGG | - | chr3.2:80210833-80210852 | MS.gene06418:intron | 50.0% | |
| ! | TATACTGCGCAGGACTAGCA+AGG | - | chr3.2:80213282-80213301 | MS.gene06418:CDS | 50.0% |
| !! | GAGGTTTTGGTAGTTGGGAG+TGG | - | chr3.2:80210819-80210838 | MS.gene06418:intron | 50.0% |
| AAGCTTCTTGTGGTCGCCAC+CGG | - | chr3.2:80210690-80210709 | MS.gene06418:intron | 55.0% | |
| AGCCATTGGAAGGGGGATCA+TGG | - | chr3.2:80213257-80213276 | MS.gene06418:CDS | 55.0% | |
| AGGCTTGTGGGGAGTCAAGA+TGG | - | chr3.2:80213307-80213326 | MS.gene06418:CDS | 55.0% | |
| CTAGCAAGGAGAGGCTTGTG+GGG | - | chr3.2:80213296-80213315 | MS.gene06418:CDS | 55.0% | |
| CTTACCCGAGCCATTGGAAG+GGG | - | chr3.2:80213249-80213268 | MS.gene06418:CDS | 55.0% | |
| GACTAGCAAGGAGAGGCTTG+TGG | - | chr3.2:80213294-80213313 | MS.gene06418:CDS | 55.0% | |
| GCTTACCCGAGCCATTGGAA+GGG | - | chr3.2:80213248-80213267 | MS.gene06418:CDS | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3.2:80212078-80212097 | MS.gene06418:intron | 55.0% | |
| TGATCCCCCTTCCAATGGCT+CGG | + | chr3.2:80213257-80213276 | None:intergenic | 55.0% | |
| TGCTTACCCGAGCCATTGGA+AGG | - | chr3.2:80213247-80213266 | MS.gene06418:CDS | 55.0% | |
| TTACCCGAGCCATTGGAAGG+GGG | - | chr3.2:80213250-80213269 | MS.gene06418:CDS | 55.0% | |
| ! | GATAGGTAGGTTGGGCCTGA+GGG | + | chr3.2:80210507-80210526 | None:intergenic | 55.0% |
| GATCCCCCTTCCAATGGCTC+GGG | + | chr3.2:80213256-80213275 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3.2:80212077-80212096 | MS.gene06418:intron | 60.0% | |
| ! | GGATAGGTAGGTTGGGCCTG+AGG | + | chr3.2:80210508-80210527 | None:intergenic | 60.0% |
| ! | TGCGCAGGACTAGCAAGGAG+AGG | - | chr3.2:80213287-80213306 | MS.gene06418:CDS | 60.0% |
| ! | AGGTAGGTTGGGCCTGAGGG+TGG | + | chr3.2:80210504-80210523 | None:intergenic | 65.0% |
| ! | GGTAGGTTGGGCCTGAGGGT+GGG | + | chr3.2:80210503-80210522 | None:intergenic | 65.0% |
| GTTGGGCCTGAGGGTGGGTG+AGG | + | chr3.2:80210498-80210517 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80210492 | 80213382 | 80210492 | ID=MS.gene06418 |
| chr3.2 | mRNA | 80210492 | 80213382 | 80210492 | ID=MS.gene06418.t1;Parent=MS.gene06418 |
| chr3.2 | exon | 80212960 | 80213382 | 80212960 | ID=MS.gene06418.t1.exon1;Parent=MS.gene06418.t1 |
| chr3.2 | CDS | 80212960 | 80213382 | 80212960 | ID=cds.MS.gene06418.t1;Parent=MS.gene06418.t1 |
| chr3.2 | exon | 80211228 | 80211461 | 80211228 | ID=MS.gene06418.t1.exon2;Parent=MS.gene06418.t1 |
| chr3.2 | CDS | 80211228 | 80211461 | 80211228 | ID=cds.MS.gene06418.t1;Parent=MS.gene06418.t1 |
| chr3.2 | exon | 80210842 | 80210967 | 80210842 | ID=MS.gene06418.t1.exon3;Parent=MS.gene06418.t1 |
| chr3.2 | CDS | 80210842 | 80210967 | 80210842 | ID=cds.MS.gene06418.t1;Parent=MS.gene06418.t1 |
| chr3.2 | exon | 80210492 | 80210668 | 80210492 | ID=MS.gene06418.t1.exon4;Parent=MS.gene06418.t1 |
| chr3.2 | CDS | 80210492 | 80210668 | 80210492 | ID=cds.MS.gene06418.t1;Parent=MS.gene06418.t1 |
| Gene Sequence |
| Protein sequence |
