Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066584.t1 | XP_003605125.2 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 4.30E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066584.t1 | G7JEM0 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 3.1e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene066584 | -0.827347 | 1.65E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene066584 | -0.823697 | 1.20E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene066584 | -0.802595 | 5.21E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene066584 | -0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene066584 | -0.807237 | 5.58E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene066584 | -0.82826 | 9.93E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene066584 | -0.825442 | 4.68E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene066584 | -0.808117 | 3.63E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene066584 | -0.817606 | 3.02E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene066584 | -0.801593 | 8.37E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene066584 | -0.804269 | 2.34E-49 | -1.69E-46 |
| MS.gene050647 | MS.gene066584 | 0.839689 | 1.36E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene066584 | -0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene066584 | -0.801158 | 1.03E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene066584 | -0.813486 | 2.50E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene066584 | -0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene066584 | -0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene066584 | -0.816232 | 6.15E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene066584 | -0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene066584 | -0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene052805 | MS.gene066584 | 0.807701 | 4.45E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene066584 | -0.813321 | 2.72E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene066584 | -0.802894 | 4.52E-49 | -1.69E-46 |
| MS.gene053403 | MS.gene066584 | 0.800921 | 1.15E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene066584 | 0.819524 | 1.11E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene066584 | -0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene066584 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene066584 | -0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene066584 | 0.802599 | 5.20E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene066584 | -0.801617 | 8.28E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene066584 | -0.81272 | 3.68E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene066584 | -0.822277 | 2.58E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene066584 | -0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene05592 | MS.gene066584 | -0.808791 | 2.60E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene066584 | -0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene066584 | -0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene066584 | -0.803534 | 3.33E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene066584 | -0.806793 | 6.92E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene066584 | -0.809096 | 2.24E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene066584 | -0.811768 | 5.94E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene066584 | -0.808964 | 2.39E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene066584 | -0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene066584 | -0.809155 | 2.18E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene066584 | -0.806876 | 6.65E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene066584 | -0.821357 | 4.22E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene066584 | -0.806166 | 9.39E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene066584 | -0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene066584 | -0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene066584 | -0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene066584 | -0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene066584 | -0.824639 | 7.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066584.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene066584.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene066584.t1 | MTR_4g102220 | 55.895 | 229 | 89 | 7 | 1 | 222 | 1 | 224 | 6.26e-76 | 228 |
| MS.gene066584.t1 | MTR_5g011800 | 52.814 | 231 | 99 | 5 | 1 | 223 | 1 | 229 | 7.70e-76 | 228 |
| MS.gene066584.t1 | MTR_5g011820 | 51.724 | 232 | 100 | 6 | 1 | 223 | 4 | 232 | 4.88e-71 | 216 |
| MS.gene066584.t1 | MTR_6g060390 | 30.493 | 223 | 136 | 7 | 5 | 222 | 4 | 212 | 9.67e-25 | 97.4 |
| MS.gene066584.t1 | MTR_7g117380 | 30.973 | 226 | 141 | 7 | 5 | 222 | 3 | 221 | 1.03e-24 | 97.8 |
| MS.gene066584.t1 | MTR_1g076800 | 31.739 | 230 | 123 | 10 | 5 | 222 | 4 | 211 | 4.84e-24 | 95.9 |
| MS.gene066584.t1 | MTR_6g060440 | 30.045 | 223 | 135 | 8 | 5 | 222 | 4 | 210 | 2.11e-23 | 94.0 |
| MS.gene066584.t1 | MTR_4g023950 | 29.730 | 222 | 134 | 9 | 5 | 222 | 4 | 207 | 2.74e-21 | 88.2 |
| MS.gene066584.t1 | MTR_7g117380 | 30.055 | 183 | 118 | 6 | 43 | 222 | 4 | 179 | 1.31e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066584.t1 | AT2G45360 | 56.757 | 222 | 88 | 3 | 1 | 222 | 1 | 214 | 7.59e-81 | 241 |
| MS.gene066584.t1 | AT3G60780 | 54.260 | 223 | 95 | 3 | 1 | 222 | 1 | 217 | 1.13e-77 | 233 |
| MS.gene066584.t1 | AT1G62840 | 46.725 | 229 | 111 | 5 | 1 | 223 | 1 | 224 | 1.50e-59 | 187 |
| MS.gene066584.t1 | AT1G12320 | 46.667 | 225 | 101 | 6 | 1 | 221 | 1 | 210 | 1.10e-49 | 161 |
| MS.gene066584.t1 | AT5G62280 | 27.586 | 232 | 143 | 8 | 5 | 222 | 4 | 224 | 9.17e-15 | 71.2 |
Find 62 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGTTTCTTGGTTTAAA+TGG | 0.134381 | 4.2:+78789559 | MS.gene066584:CDS |
| ATAACATTCTACGATGAATT+TGG | 0.250717 | 4.2:-78789229 | None:intergenic |
| TATACATCATGAAGCTTGTT+TGG | 0.316497 | 4.2:+78788473 | None:intergenic |
| GGCAAAGGTCAAATGTTTCT+TGG | 0.321382 | 4.2:+78789550 | MS.gene066584:CDS |
| TGCAATCTTGACCCTTCATC+TGG | 0.322628 | 4.2:-78789333 | None:intergenic |
| AGGCCAACACTTGCGGCTAT+TGG | 0.324490 | 4.2:-78789264 | None:intergenic |
| TGTGAGAAATTCAAGGAATC+TGG | 0.336992 | 4.2:+78789165 | MS.gene066584:CDS |
| TTTGCCTGTTGGAAAGGGTT+TGG | 0.337937 | 4.2:+78789626 | MS.gene066584:CDS |
| TTGTGGTGGATTGTAGGCTT+AGG | 0.346252 | 4.2:+78789457 | MS.gene066584:CDS |
| GAGTACTAGAGGGGCAGTTT+TGG | 0.356533 | 4.2:+78789512 | MS.gene066584:CDS |
| TGTGGTGGATTGTAGGCTTA+GGG | 0.385593 | 4.2:+78789458 | MS.gene066584:CDS |
| ATTACAGTGTGAGAAATTCA+AGG | 0.434592 | 4.2:+78789158 | MS.gene066584:intron |
| ACGGTGATCAAAAGTCTTGA+TGG | 0.439976 | 4.2:+78789423 | MS.gene066584:CDS |
| GCTTACATAGGAAGTAGAAT+TGG | 0.450329 | 4.2:+78789654 | MS.gene066584:CDS |
| AGTTCTCGGTGAAGCGCAAA+CGG | 0.470434 | 4.2:+78789404 | MS.gene066584:CDS |
| GATGAATTTGGTGTTCCATC+CGG | 0.471577 | 4.2:-78789217 | None:intergenic |
| GTGAGAAATTCAAGGAATCT+GGG | 0.478729 | 4.2:+78789166 | MS.gene066584:CDS |
| CACAAAAGCCCTAGCCGAGA+TGG | 0.481827 | 4.2:+78789359 | MS.gene066584:CDS |
| GAGATACACCCATCTCGGCT+AGG | 0.484116 | 4.2:-78789368 | None:intergenic |
| ATATCCAAACCCTTTCCAAC+AGG | 0.485251 | 4.2:-78789630 | None:intergenic |
| AGCTTCAAGTAGTGCTTCAA+AGG | 0.491703 | 4.2:+78789686 | MS.gene066584:CDS |
| GATCAAAAGTCTTGATGGGT+TGG | 0.514141 | 4.2:+78789428 | MS.gene066584:CDS |
| GCAGTTGCTGCTCGCAACAC+CGG | 0.530079 | 4.2:+78789288 | MS.gene066584:CDS |
| AGGCACACGTGTGGTTAGAT+CGG | 0.531174 | 4.2:+78789599 | MS.gene066584:CDS |
| TGGAACATGGTTCTTGAAAG+AGG | 0.534421 | 4.2:+78789579 | MS.gene066584:CDS |
| TGTTGCGAGCAGCAACTGCT+AGG | 0.534968 | 4.2:-78789284 | None:intergenic |
| GATCTATGAGTTTGATCCAA+CGG | 0.544545 | 4.2:-78789719 | None:intergenic |
| GGTTTGGATATTGCTTACAT+AGG | 0.545757 | 4.2:+78789642 | MS.gene066584:CDS |
| ACAAAAGCCCTAGCCGAGAT+GGG | 0.552505 | 4.2:+78789360 | MS.gene066584:CDS |
| GGTGTTCCATCCGGCTGCCA+TGG | 0.552686 | 4.2:-78789208 | None:intergenic |
| CGGTGATCAAAAGTCTTGAT+GGG | 0.555108 | 4.2:+78789424 | MS.gene066584:CDS |
| AGATACACCCATCTCGGCTA+GGG | 0.555385 | 4.2:-78789367 | None:intergenic |
| CTTCTATCATCCATGGCAGC+CGG | 0.557426 | 4.2:+78789198 | MS.gene066584:CDS |
| TACATAGGAAGTAGAATTGG+TGG | 0.559347 | 4.2:+78789657 | MS.gene066584:CDS |
| GCAATCTTGACCCTTCATCT+GGG | 0.562428 | 4.2:-78789332 | None:intergenic |
| ATCGTAGAATGTTATTCCCA+CGG | 0.567348 | 4.2:+78789237 | MS.gene066584:CDS |
| TATGCACACGTGTCTTGCAC+CGG | 0.569145 | 4.2:-78789307 | None:intergenic |
| GTGTGCATAGTCCCAGATGA+AGG | 0.570105 | 4.2:+78789321 | MS.gene066584:CDS |
| AGCTGAGCTTCTATCATCCA+TGG | 0.571128 | 4.2:+78789191 | MS.gene066584:CDS |
| TCACCGAGAACTATCTCCGG+TGG | 0.572168 | 4.2:-78789393 | None:intergenic |
| CACCGAGAACTATCTCCGGT+GGG | 0.573517 | 4.2:-78789392 | None:intergenic |
| TAGGGTTCTTAAGGTTGCAA+AGG | 0.574007 | 4.2:+78789488 | MS.gene066584:CDS |
| GGTCCAATAGCCGCAAGTGT+TGG | 0.576902 | 4.2:+78789261 | MS.gene066584:CDS |
| TATCATCCATGGCAGCCGGA+TGG | 0.579782 | 4.2:+78789202 | MS.gene066584:CDS |
| TGCGGCTATTGGACCGCCGT+GGG | 0.584383 | 4.2:-78789253 | None:intergenic |
| CCGAGAACTATCTCCGGTGG+GGG | 0.587395 | 4.2:-78789390 | None:intergenic |
| CAAAGGGTACTCCTAGCCGT+TGG | 0.589404 | 4.2:+78789703 | MS.gene066584:CDS |
| GCTTCAAGTAGTGCTTCAAA+GGG | 0.589534 | 4.2:+78789687 | MS.gene066584:CDS |
| TTCTTGGTTTAAATGGAACA+TGG | 0.590885 | 4.2:+78789566 | MS.gene066584:CDS |
| GTTGCAAAGGTGAGTACTAG+AGG | 0.597632 | 4.2:+78789501 | MS.gene066584:CDS |
| AACTGCTAGGCCAACACTTG+CGG | 0.598354 | 4.2:-78789271 | None:intergenic |
| TTGCAAAGGTGAGTACTAGA+GGG | 0.599847 | 4.2:+78789502 | MS.gene066584:CDS |
| TTGCGGCTATTGGACCGCCG+TGG | 0.612852 | 4.2:-78789254 | None:intergenic |
| ACCGAGAACTATCTCCGGTG+GGG | 0.617152 | 4.2:-78789391 | None:intergenic |
| TGTGCATAGTCCCAGATGAA+GGG | 0.619561 | 4.2:+78789322 | MS.gene066584:CDS |
| ATGAGTTTGATCCAACGGCT+AGG | 0.623677 | 4.2:-78789714 | None:intergenic |
| ATAGGAAGTAGAATTGGTGG+TGG | 0.639207 | 4.2:+78789660 | MS.gene066584:CDS |
| GCTTCACCGAGAACTATCTC+CGG | 0.641092 | 4.2:-78789396 | None:intergenic |
| TGAGAAATTCAAGGAATCTG+GGG | 0.649276 | 4.2:+78789167 | MS.gene066584:CDS |
| TGCAAAGGTGAGTACTAGAG+GGG | 0.660954 | 4.2:+78789503 | MS.gene066584:CDS |
| TCTTGAAAGAGGCACACGTG+TGG | 0.689378 | 4.2:+78789590 | MS.gene066584:CDS |
| GTAGAATGTTATTCCCACGG+CGG | 0.814857 | 4.2:+78789240 | MS.gene066584:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATGGTATTAATTATTT+TGG | + | chr4.2:78789127-78789146 | MS.gene066584:intron | 10.0% |
| !! | AAAGAAAAAATATTACAAAG+AGG | - | chr4.2:78788682-78788701 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTACAAAGA+GGG | - | chr4.2:78788681-78788700 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATACAAAG+AGG | - | chr4.2:78788956-78788975 | None:intergenic | 15.0% |
| !! | GAAAAAAAATTATACAAAGA+GGG | - | chr4.2:78788955-78788974 | None:intergenic | 15.0% |
| !! | TAGTGATTATAATTTATTCT+TGG | - | chr4.2:78789064-78789083 | None:intergenic | 15.0% |
| !!! | AAATTGATGATGTTTTAATA+TGG | + | chr4.2:78789112-78789131 | MS.gene066584:intron | 15.0% |
| !! | AACTAAAATGGAAAAAAGAA+AGG | - | chr4.2:78788657-78788676 | None:intergenic | 20.0% |
| !! | ACTAAAATGGAAAAAAGAAA+GGG | - | chr4.2:78788656-78788675 | None:intergenic | 20.0% |
| !!! | TTTTAAGACAAATAACAACA+AGG | - | chr4.2:78789092-78789111 | None:intergenic | 20.0% |
| ! | AAACTCATAGATCAAAAATC+AGG | + | chr4.2:78789729-78789748 | MS.gene066584:CDS | 25.0% |
| ! | ATAACATTCTACGATGAATT+TGG | - | chr4.2:78789232-78789251 | None:intergenic | 25.0% |
| ! | ATTCTTGATACCATATTATG+TGG | - | chr4.2:78789018-78789037 | None:intergenic | 25.0% |
| ! | CAAATGTTTCTTGGTTTAAA+TGG | + | chr4.2:78789559-78789578 | MS.gene066584:CDS | 25.0% |
| ACGTAAACTTATGTGATTGA+AGG | - | chr4.2:78788835-78788854 | None:intergenic | 30.0% | |
| ATTACAGTGTGAGAAATTCA+AGG | + | chr4.2:78789158-78789177 | MS.gene066584:intron | 30.0% | |
| CGTAAACTTATGTGATTGAA+GGG | - | chr4.2:78788834-78788853 | None:intergenic | 30.0% | |
| GTAAACTTATGTGATTGAAG+GGG | - | chr4.2:78788833-78788852 | None:intergenic | 30.0% | |
| TAAACTTATGTGATTGAAGG+GGG | - | chr4.2:78788832-78788851 | None:intergenic | 30.0% | |
| TACAAAGAGGGAAACTAAAA+TGG | - | chr4.2:78788669-78788688 | None:intergenic | 30.0% | |
| TACAAAGAGGGAAATGAAAA+TGG | - | chr4.2:78788943-78788962 | None:intergenic | 30.0% | |
| TTCTTGGTTTAAATGGAACA+TGG | + | chr4.2:78789566-78789585 | MS.gene066584:CDS | 30.0% | |
| ! | AGTGTCTATGTAAGCTTTTA+AGG | - | chr4.2:78788512-78788531 | None:intergenic | 30.0% |
| ! | TTTTGGCATGTAAAAATGCA+TGG | + | chr4.2:78789529-78789548 | MS.gene066584:CDS | 30.0% |
| !! | ATTGATCTTACTTGTTGTTG+AGG | - | chr4.2:78788559-78788578 | None:intergenic | 30.0% |
| ATCGTAGAATGTTATTCCCA+CGG | + | chr4.2:78789237-78789256 | MS.gene066584:CDS | 35.0% | |
| CATATTATGTGGTGTGATTG+CGG | - | chr4.2:78789007-78789026 | None:intergenic | 35.0% | |
| CATGTAAAAATGCATGGCAA+AGG | + | chr4.2:78789535-78789554 | MS.gene066584:CDS | 35.0% | |
| GATCTATGAGTTTGATCCAA+CGG | - | chr4.2:78789722-78789741 | None:intergenic | 35.0% | |
| GCTTACATAGGAAGTAGAAT+TGG | + | chr4.2:78789654-78789673 | MS.gene066584:CDS | 35.0% | |
| GGGAAATGAAAATGGAAAAG+TGG | - | chr4.2:78788935-78788954 | None:intergenic | 35.0% | |
| GGTTTGGATATTGCTTACAT+AGG | + | chr4.2:78789642-78789661 | MS.gene066584:CDS | 35.0% | |
| GTGAGAAATTCAAGGAATCT+GGG | + | chr4.2:78789166-78789185 | MS.gene066584:CDS | 35.0% | |
| TACATAGGAAGTAGAATTGG+TGG | + | chr4.2:78789657-78789676 | MS.gene066584:CDS | 35.0% | |
| TGAGAAATTCAAGGAATCTG+GGG | + | chr4.2:78789167-78789186 | MS.gene066584:CDS | 35.0% | |
| TGTGAGAAATTCAAGGAATC+TGG | + | chr4.2:78789165-78789184 | MS.gene066584:CDS | 35.0% | |
| !! | TACTTGTTGTTGAGGTTGAA+AGG | - | chr4.2:78788551-78788570 | None:intergenic | 35.0% |
| !!! | ATTTTCTTGTGGTGGATTGT+AGG | + | chr4.2:78789451-78789470 | MS.gene066584:CDS | 35.0% |
| !!! | GTTTTTTTGCCTGTTGGAAA+GGG | + | chr4.2:78789621-78789640 | MS.gene066584:CDS | 35.0% |
| !!! | TAAGCTTTTAAGGCAGTTTC+TGG | - | chr4.2:78788502-78788521 | None:intergenic | 35.0% |
| ACGGTGATCAAAAGTCTTGA+TGG | + | chr4.2:78789423-78789442 | MS.gene066584:CDS | 40.0% | |
| AGCTTCAAGTAGTGCTTCAA+AGG | + | chr4.2:78789686-78789705 | MS.gene066584:CDS | 40.0% | |
| ATAGGAAGTAGAATTGGTGG+TGG | + | chr4.2:78789660-78789679 | MS.gene066584:CDS | 40.0% | |
| ATATCCAAACCCTTTCCAAC+AGG | - | chr4.2:78789633-78789652 | None:intergenic | 40.0% | |
| CGCAATCACACCACATAATA+TGG | + | chr4.2:78789005-78789024 | MS.gene066584:intron | 40.0% | |
| CGGTGATCAAAAGTCTTGAT+GGG | + | chr4.2:78789424-78789443 | MS.gene066584:CDS | 40.0% | |
| GCTTCAAGTAGTGCTTCAAA+GGG | + | chr4.2:78789687-78789706 | MS.gene066584:CDS | 40.0% | |
| GGCAAAGGTCAAATGTTTCT+TGG | + | chr4.2:78789550-78789569 | MS.gene066584:CDS | 40.0% | |
| TAGGGTTCTTAAGGTTGCAA+AGG | + | chr4.2:78789488-78789507 | MS.gene066584:CDS | 40.0% | |
| TGGAACATGGTTCTTGAAAG+AGG | + | chr4.2:78789579-78789598 | MS.gene066584:CDS | 40.0% | |
| TTGCAAAGGTGAGTACTAGA+GGG | + | chr4.2:78789502-78789521 | MS.gene066584:CDS | 40.0% | |
| ! | GATCAAAAGTCTTGATGGGT+TGG | + | chr4.2:78789428-78789447 | MS.gene066584:CDS | 40.0% |
| ! | GGATTTTGCTAGGGTTCTTA+AGG | + | chr4.2:78789479-78789498 | MS.gene066584:CDS | 40.0% |
| ! | TAGGCTTAGGGATTTTGCTA+GGG | + | chr4.2:78789470-78789489 | MS.gene066584:CDS | 40.0% |
| !! | GATGAATTTGGTGTTCCATC+CGG | - | chr4.2:78789220-78789239 | None:intergenic | 40.0% |
| !! | TTGAGGTTGAAAGGTGCTTA+CGG | - | chr4.2:78788542-78788561 | None:intergenic | 40.0% |
| !!! | AGATCGGTTTTTTTGCCTGT+TGG | + | chr4.2:78789615-78789634 | MS.gene066584:CDS | 40.0% |
| !!! | GGTTTTTTTGCCTGTTGGAA+AGG | + | chr4.2:78789620-78789639 | MS.gene066584:CDS | 40.0% |
| !!! | TGATGGGTTGGATTTTCTTG+TGG | + | chr4.2:78789440-78789459 | MS.gene066584:CDS | 40.0% |
| AGCTGAGCTTCTATCATCCA+TGG | + | chr4.2:78789191-78789210 | MS.gene066584:CDS | 45.0% | |
| ATGAGTTTGATCCAACGGCT+AGG | - | chr4.2:78789717-78789736 | None:intergenic | 45.0% | |
| GCAATCTTGACCCTTCATCT+GGG | - | chr4.2:78789335-78789354 | None:intergenic | 45.0% | |
| GTAGAATGTTATTCCCACGG+CGG | + | chr4.2:78789240-78789259 | MS.gene066584:CDS | 45.0% | |
| GTTGCAAAGGTGAGTACTAG+AGG | + | chr4.2:78789501-78789520 | MS.gene066584:CDS | 45.0% | |
| TGCAAAGGTGAGTACTAGAG+GGG | + | chr4.2:78789503-78789522 | MS.gene066584:CDS | 45.0% | |
| TGCAATCTTGACCCTTCATC+TGG | - | chr4.2:78789336-78789355 | None:intergenic | 45.0% | |
| TGTGCATAGTCCCAGATGAA+GGG | + | chr4.2:78789322-78789341 | MS.gene066584:CDS | 45.0% | |
| TTTGCCTGTTGGAAAGGGTT+TGG | + | chr4.2:78789626-78789645 | MS.gene066584:CDS | 45.0% | |
| ! | GTAGGCTTAGGGATTTTGCT+AGG | + | chr4.2:78789469-78789488 | MS.gene066584:CDS | 45.0% |
| !! | TGGGTTGGATTTTCTTGTGG+TGG | + | chr4.2:78789443-78789462 | MS.gene066584:CDS | 45.0% |
| !! | TGTGGTGGATTGTAGGCTTA+GGG | + | chr4.2:78789458-78789477 | MS.gene066584:CDS | 45.0% |
| !! | TTGTGGTGGATTGTAGGCTT+AGG | + | chr4.2:78789457-78789476 | MS.gene066584:CDS | 45.0% |
| !! | ATAATATATATTTGAAAAAT+TGG | - | chr4.2:78788711-78788730 | None:intergenic | 5.0% |
| AACTGCTAGGCCAACACTTG+CGG | - | chr4.2:78789274-78789293 | None:intergenic | 50.0% | |
| ACAAAAGCCCTAGCCGAGAT+GGG | + | chr4.2:78789360-78789379 | MS.gene066584:CDS | 50.0% | |
| AGATACACCCATCTCGGCTA+GGG | - | chr4.2:78789370-78789389 | None:intergenic | 50.0% | |
| AGGCACACGTGTGGTTAGAT+CGG | + | chr4.2:78789599-78789618 | MS.gene066584:CDS | 50.0% | |
| AGTTCTCGGTGAAGCGCAAA+CGG | + | chr4.2:78789404-78789423 | MS.gene066584:CDS | 50.0% | |
| CTTCTATCATCCATGGCAGC+CGG | + | chr4.2:78789198-78789217 | MS.gene066584:CDS | 50.0% | |
| GCTTCACCGAGAACTATCTC+CGG | - | chr4.2:78789399-78789418 | None:intergenic | 50.0% | |
| GTGTGCATAGTCCCAGATGA+AGG | + | chr4.2:78789321-78789340 | MS.gene066584:CDS | 50.0% | |
| TATGCACACGTGTCTTGCAC+CGG | - | chr4.2:78789310-78789329 | None:intergenic | 50.0% | |
| ! | GAGTACTAGAGGGGCAGTTT+TGG | + | chr4.2:78789512-78789531 | MS.gene066584:CDS | 50.0% |
| ! | TCTTGAAAGAGGCACACGTG+TGG | + | chr4.2:78789590-78789609 | MS.gene066584:CDS | 50.0% |
| ACCGAGAACTATCTCCGGTG+GGG | - | chr4.2:78789394-78789413 | None:intergenic | 55.0% | |
| AGGCCAACACTTGCGGCTAT+TGG | - | chr4.2:78789267-78789286 | None:intergenic | 55.0% | |
| CACAAAAGCCCTAGCCGAGA+TGG | + | chr4.2:78789359-78789378 | MS.gene066584:CDS | 55.0% | |
| CACCGAGAACTATCTCCGGT+GGG | - | chr4.2:78789395-78789414 | None:intergenic | 55.0% | |
| GAGATACACCCATCTCGGCT+AGG | - | chr4.2:78789371-78789390 | None:intergenic | 55.0% | |
| GGTCCAATAGCCGCAAGTGT+TGG | + | chr4.2:78789261-78789280 | MS.gene066584:CDS | 55.0% | |
| TATCATCCATGGCAGCCGGA+TGG | + | chr4.2:78789202-78789221 | MS.gene066584:CDS | 55.0% | |
| TCACCGAGAACTATCTCCGG+TGG | - | chr4.2:78789396-78789415 | None:intergenic | 55.0% | |
| TGGGGGAGATACACCCATCT+CGG | - | chr4.2:78789376-78789395 | None:intergenic | 55.0% | |
| TGTTGCGAGCAGCAACTGCT+AGG | - | chr4.2:78789287-78789306 | None:intergenic | 55.0% | |
| !! | CAAAGGGTACTCCTAGCCGT+TGG | + | chr4.2:78789703-78789722 | MS.gene066584:CDS | 55.0% |
| CCCCCACCGGAGATAGTTCT+CGG | + | chr4.2:78789390-78789409 | MS.gene066584:CDS | 60.0% | |
| CCGAGAACTATCTCCGGTGG+GGG | - | chr4.2:78789393-78789412 | None:intergenic | 60.0% | |
| GATGGGTGTATCTCCCCCAC+CGG | + | chr4.2:78789377-78789396 | MS.gene066584:CDS | 60.0% | |
| GCAGTTGCTGCTCGCAACAC+CGG | + | chr4.2:78789288-78789307 | MS.gene066584:CDS | 60.0% | |
| GGTGTTCCATCCGGCTGCCA+TGG | - | chr4.2:78789211-78789230 | None:intergenic | 65.0% | |
| TGCGGCTATTGGACCGCCGT+GGG | - | chr4.2:78789256-78789275 | None:intergenic | 65.0% | |
| TTGCGGCTATTGGACCGCCG+TGG | - | chr4.2:78789257-78789276 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 78788481 | 78789776 | 78788481 | ID=MS.gene066584 |
| chr4.2 | mRNA | 78788481 | 78789776 | 78788481 | ID=MS.gene066584.t1;Parent=MS.gene066584 |
| chr4.2 | exon | 78788481 | 78788540 | 78788481 | ID=MS.gene066584.t1.exon1;Parent=MS.gene066584.t1 |
| chr4.2 | CDS | 78788481 | 78788540 | 78788481 | ID=cds.MS.gene066584.t1;Parent=MS.gene066584.t1 |
| chr4.2 | exon | 78789165 | 78789776 | 78789165 | ID=MS.gene066584.t1.exon2;Parent=MS.gene066584.t1 |
| chr4.2 | CDS | 78789165 | 78789776 | 78789165 | ID=cds.MS.gene066584.t1;Parent=MS.gene066584.t1 |
| Gene Sequence |
| Protein sequence |
