Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066897.t1 | XP_013445304.1 | 98.1 | 412 | 8 | 0 | 1 | 412 | 1 | 412 | 2.90E-228 | 800.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066897.t1 | O64517 | 65.6 | 424 | 128 | 6 | 1 | 412 | 1 | 418 | 1.9e-151 | 537.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066897.t1 | A0A072U0M2 | 98.1 | 412 | 8 | 0 | 1 | 412 | 1 | 412 | 2.1e-228 | 800.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene066897 | 0.831942 | 1.25E-55 | -1.69E-46 |
MS.gene049807 | MS.gene066897 | 0.843603 | 1.27E-58 | -1.69E-46 |
MS.gene049887 | MS.gene066897 | 0.843188 | 1.63E-58 | -1.69E-46 |
MS.gene050224 | MS.gene066897 | 0.839101 | 1.94E-57 | -1.69E-46 |
MS.gene050359 | MS.gene066897 | 0.84948 | 3.15E-60 | -1.69E-46 |
MS.gene050414 | MS.gene066897 | 0.811283 | 7.56E-51 | -1.69E-46 |
MS.gene050646 | MS.gene066897 | 0.818507 | 1.89E-52 | -1.69E-46 |
MS.gene050689 | MS.gene066897 | 0.802321 | 5.93E-49 | -1.69E-46 |
MS.gene050838 | MS.gene066897 | 0.80855 | 2.93E-50 | -1.69E-46 |
MS.gene051003 | MS.gene066897 | 0.813764 | 2.17E-51 | -1.69E-46 |
MS.gene051102 | MS.gene066897 | 0.838196 | 3.32E-57 | -1.69E-46 |
MS.gene051184 | MS.gene066897 | 0.815047 | 1.13E-51 | -1.69E-46 |
MS.gene051234 | MS.gene066897 | 0.813396 | 2.61E-51 | -1.69E-46 |
MS.gene051381 | MS.gene066897 | 0.823833 | 1.12E-53 | -1.69E-46 |
MS.gene051724 | MS.gene066897 | 0.828413 | 9.12E-55 | -1.69E-46 |
MS.gene051852 | MS.gene066897 | 0.848713 | 5.14E-60 | -1.69E-46 |
MS.gene052072 | MS.gene066897 | 0.803693 | 3.09E-49 | -1.69E-46 |
MS.gene052239 | MS.gene066897 | -0.80684 | 6.77E-50 | -1.69E-46 |
MS.gene052242 | MS.gene066897 | -0.824263 | 8.87E-54 | -1.69E-46 |
MS.gene052307 | MS.gene066897 | 0.848244 | 6.93E-60 | -1.69E-46 |
MS.gene052335 | MS.gene066897 | 0.831947 | 1.25E-55 | -1.69E-46 |
MS.gene052463 | MS.gene066897 | 0.818196 | 2.22E-52 | -1.69E-46 |
MS.gene052514 | MS.gene066897 | 0.817056 | 4.02E-52 | -1.69E-46 |
MS.gene052516 | MS.gene066897 | 0.868172 | 7.96E-66 | -1.69E-46 |
MS.gene052609 | MS.gene066897 | 0.850041 | 2.19E-60 | -1.69E-46 |
MS.gene053079 | MS.gene066897 | 0.818799 | 1.62E-52 | -1.69E-46 |
MS.gene053143 | MS.gene066897 | 0.841208 | 5.46E-58 | -1.69E-46 |
MS.gene053144 | MS.gene066897 | 0.824715 | 6.95E-54 | -1.69E-46 |
MS.gene053575 | MS.gene066897 | 0.831094 | 2.03E-55 | -1.69E-46 |
MS.gene053581 | MS.gene066897 | 0.808073 | 3.70E-50 | -1.69E-46 |
MS.gene054584 | MS.gene066897 | 0.806753 | 7.06E-50 | -1.69E-46 |
MS.gene055465 | MS.gene066897 | 0.801145 | 1.03E-48 | -1.69E-46 |
MS.gene055469 | MS.gene066897 | 0.825429 | 4.71E-54 | -1.69E-46 |
MS.gene055513 | MS.gene066897 | 0.801889 | 7.28E-49 | -1.69E-46 |
MS.gene055864 | MS.gene066897 | 0.82148 | 3.95E-53 | -1.69E-46 |
MS.gene056181 | MS.gene066897 | 0.804827 | 1.79E-49 | -1.69E-46 |
MS.gene056677 | MS.gene066897 | 0.811925 | 5.49E-51 | -1.69E-46 |
MS.gene056699 | MS.gene066897 | 0.821366 | 4.19E-53 | -1.69E-46 |
MS.gene058008 | MS.gene066897 | 0.804277 | 2.33E-49 | -1.69E-46 |
MS.gene058009 | MS.gene066897 | 0.802751 | 4.83E-49 | -1.69E-46 |
MS.gene058010 | MS.gene066897 | 0.831985 | 1.22E-55 | -1.69E-46 |
MS.gene058054 | MS.gene066897 | 0.80368 | 3.11E-49 | -1.69E-46 |
MS.gene059007 | MS.gene066897 | 0.803948 | 2.73E-49 | -1.69E-46 |
MS.gene059170 | MS.gene066897 | 0.801595 | 8.36E-49 | -1.69E-46 |
MS.gene059713 | MS.gene066897 | 0.806125 | 9.58E-50 | -1.69E-46 |
MS.gene059965 | MS.gene066897 | 0.825413 | 4.75E-54 | -1.69E-46 |
MS.gene060167 | MS.gene066897 | 0.817731 | 2.83E-52 | -1.69E-46 |
MS.gene060400 | MS.gene066897 | 0.807631 | 4.60E-50 | -1.69E-46 |
MS.gene061006 | MS.gene066897 | 0.805594 | 1.24E-49 | -1.69E-46 |
MS.gene061100 | MS.gene066897 | 0.833266 | 5.89E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066897.t1 | MTR_8g447080 | 98.058 | 412 | 8 | 0 | 1 | 412 | 1 | 412 | 0.0 | 833 |
MS.gene066897.t1 | MTR_2g063570 | 65.865 | 416 | 120 | 6 | 1 | 412 | 4 | 401 | 0.0 | 538 |
MS.gene066897.t1 | MTR_7g088035 | 53.548 | 155 | 68 | 2 | 5 | 156 | 9 | 162 | 7.29e-49 | 169 |
MS.gene066897.t1 | MTR_7g088035 | 51.807 | 83 | 40 | 0 | 329 | 411 | 231 | 313 | 3.77e-22 | 96.7 |
MS.gene066897.t1 | MTR_0340s0030 | 32.353 | 170 | 99 | 2 | 3 | 158 | 4 | 171 | 7.26e-24 | 100 |
MS.gene066897.t1 | MTR_7g451400 | 38.000 | 150 | 86 | 4 | 3 | 146 | 74 | 222 | 2.00e-23 | 100 |
MS.gene066897.t1 | MTR_2g008990 | 37.584 | 149 | 88 | 3 | 3 | 146 | 116 | 264 | 2.13e-20 | 92.8 |
MS.gene066897.t1 | MTR_2g008990 | 37.584 | 149 | 88 | 3 | 3 | 146 | 116 | 264 | 2.45e-20 | 92.8 |
MS.gene066897.t1 | MTR_2g008990 | 37.584 | 149 | 88 | 3 | 3 | 146 | 116 | 264 | 2.49e-20 | 92.8 |
MS.gene066897.t1 | MTR_4g094202 | 36.184 | 152 | 88 | 4 | 2 | 146 | 100 | 249 | 6.08e-19 | 88.2 |
MS.gene066897.t1 | MTR_2g008970 | 34.437 | 151 | 91 | 3 | 3 | 146 | 88 | 237 | 7.18e-18 | 84.7 |
MS.gene066897.t1 | MTR_4g094210 | 34.899 | 149 | 91 | 4 | 3 | 146 | 116 | 263 | 1.45e-17 | 84.3 |
MS.gene066897.t1 | MTR_2g008970 | 34.437 | 151 | 91 | 3 | 3 | 146 | 88 | 237 | 1.78e-17 | 83.2 |
MS.gene066897.t1 | MTR_2g008980 | 32.237 | 152 | 95 | 5 | 2 | 146 | 109 | 259 | 4.82e-15 | 75.1 |
MS.gene066897.t1 | MTR_2g008980 | 32.450 | 151 | 94 | 5 | 3 | 146 | 110 | 259 | 9.31e-15 | 75.9 |
MS.gene066897.t1 | MTR_2g008980 | 32.450 | 151 | 94 | 5 | 3 | 146 | 110 | 259 | 1.07e-14 | 75.5 |
MS.gene066897.t1 | MTR_2g008980 | 32.237 | 152 | 95 | 5 | 2 | 146 | 109 | 259 | 1.68e-14 | 74.7 |
MS.gene066897.t1 | MTR_1g054545 | 35.455 | 110 | 65 | 2 | 3 | 106 | 16 | 125 | 1.07e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066897.t1 | AT1G79340 | 66.745 | 424 | 123 | 6 | 1 | 412 | 1 | 418 | 0.0 | 557 |
MS.gene066897.t1 | AT1G79330 | 65.952 | 420 | 125 | 6 | 1 | 412 | 1 | 410 | 0.0 | 550 |
MS.gene066897.t1 | AT1G79310 | 55.924 | 422 | 157 | 9 | 1 | 412 | 1 | 403 | 1.28e-158 | 453 |
MS.gene066897.t1 | AT1G79320 | 57.488 | 414 | 128 | 6 | 1 | 412 | 1 | 368 | 5.36e-158 | 450 |
MS.gene066897.t1 | AT1G16420 | 41.801 | 433 | 178 | 10 | 1 | 412 | 1 | 380 | 2.62e-98 | 298 |
MS.gene066897.t1 | AT5G04200 | 36.516 | 419 | 156 | 12 | 1 | 411 | 6 | 322 | 1.40e-72 | 230 |
MS.gene066897.t1 | AT1G02170 | 38.255 | 149 | 86 | 4 | 3 | 146 | 80 | 227 | 1.32e-23 | 101 |
MS.gene066897.t1 | AT4G25110 | 37.162 | 148 | 88 | 3 | 3 | 146 | 116 | 262 | 1.21e-22 | 99.4 |
MS.gene066897.t1 | AT4G25110 | 36.913 | 149 | 88 | 4 | 3 | 146 | 116 | 263 | 1.03e-21 | 96.7 |
MS.gene066897.t1 | AT5G64240 | 34.228 | 149 | 92 | 3 | 3 | 146 | 90 | 237 | 2.54e-18 | 86.3 |
MS.gene066897.t1 | AT5G64240 | 34.228 | 149 | 92 | 3 | 3 | 146 | 90 | 237 | 2.85e-18 | 85.1 |
Find 115 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATACTTAAGCAGAAAAC+TGG | 0.288159 | 8.4:-54604392 | MS.gene066897:CDS |
GGATCCGGCTTTGGATTATC+AGG | 0.289069 | 8.4:-54604578 | MS.gene066897:CDS |
ATAAGCATTAGCTGCATTTC+CGG | 0.302115 | 8.4:+54604019 | None:intergenic |
TTCATAAACTTCTTCACTTT+AGG | 0.312797 | 8.4:+54604302 | None:intergenic |
GGTGGACAAGGTGGGATATT+GGG | 0.325642 | 8.4:-54604242 | MS.gene066897:CDS |
CTGCTGTTTGTTCATTATAG+TGG | 0.327931 | 8.4:-54605417 | MS.gene066897:CDS |
ATGAAGAAACAAATGAAGAT+AGG | 0.350793 | 8.4:-54604472 | MS.gene066897:CDS |
AGGGGATTTCATGTCCCTTC+AGG | 0.372762 | 8.4:-54604518 | MS.gene066897:CDS |
GGAAATGCAGCTAATGCTTA+TGG | 0.373990 | 8.4:-54604017 | MS.gene066897:CDS |
GAACATTCTGGATCCGGCTT+TGG | 0.378094 | 8.4:-54604587 | MS.gene066897:CDS |
AGGTGGACAAGGTGGGATAT+TGG | 0.378468 | 8.4:-54604243 | MS.gene066897:CDS |
AAGGGAGAAGAGGAACATTC+TGG | 0.411416 | 8.4:-54604599 | MS.gene066897:CDS |
GTCGGAGCTGGTCAGATCTT+CGG | 0.416923 | 8.4:-54605451 | MS.gene066897:CDS |
CCCACTTCCGTCTCCATGGC+AGG | 0.428897 | 8.4:+54604149 | None:intergenic |
GACAAGCATCTGCTGAAGTC+TGG | 0.432339 | 8.4:+54604045 | None:intergenic |
CACCTTCACCACCTCCATGC+TGG | 0.437332 | 8.4:+54604261 | None:intergenic |
CAAAACAGTGATGTCATCTT+CGG | 0.443836 | 8.4:+54605530 | None:intergenic |
AGCTTTCAGCAATGCAATAC+AGG | 0.451961 | 8.4:-54603994 | MS.gene066897:CDS |
ACTCGTCTTCCTGCTGAAAC+CGG | 0.458013 | 8.4:-54605387 | MS.gene066897:CDS |
TGATGATTTCAAGGAATTTG+TGG | 0.462771 | 8.4:-54604720 | MS.gene066897:CDS |
TCAGCAGATGCTTGTCCTGC+CGG | 0.466394 | 8.4:-54604038 | MS.gene066897:CDS |
GATTATCAGGCTTTCTGCAT+AGG | 0.478422 | 8.4:-54604565 | MS.gene066897:CDS |
ACCGGAGAGGATGATGATAC+TGG | 0.478656 | 8.4:-54605369 | MS.gene066897:CDS |
CAGATAGGAGAGAGCACAAA+GGG | 0.484810 | 8.4:-54604617 | MS.gene066897:CDS |
GTGAACAGATGATGATTTCA+AGG | 0.489198 | 8.4:-54604729 | MS.gene066897:intron |
GAAGAGGAACATTCTGGATC+CGG | 0.491474 | 8.4:-54604593 | MS.gene066897:CDS |
CGTCTTATGTTCTTTCCTGT+CGG | 0.492887 | 8.4:+54605480 | None:intergenic |
TGAAGAAACAAATGAAGATA+GGG | 0.494506 | 8.4:-54604471 | MS.gene066897:CDS |
AAAACATATCAGCACAAGAA+AGG | 0.502276 | 8.4:+54603843 | None:intergenic |
GCCTGCCATGGAGACGGAAG+TGG | 0.502627 | 8.4:-54604150 | MS.gene066897:CDS |
CTGCTTAAGTATATCAATGA+GGG | 0.508162 | 8.4:+54604400 | None:intergenic |
CTCATCAGAATCCCACCGCT+TGG | 0.508389 | 8.4:+54604083 | None:intergenic |
AGGTGGGATATTGGGAATGG+TGG | 0.508525 | 8.4:-54604234 | MS.gene066897:CDS |
TCATCCTCTCCGGTTTCAGC+AGG | 0.511272 | 8.4:+54605378 | None:intergenic |
TTTCAAGGAATTTGTGGATG+GGG | 0.511520 | 8.4:-54604714 | MS.gene066897:CDS |
GAAGAAGCTAAGGAGCAGAT+AGG | 0.515777 | 8.4:-54604632 | MS.gene066897:CDS |
TTGAGGATGCTATTGAGTCC+AGG | 0.518832 | 8.4:-54604538 | MS.gene066897:CDS |
GGTGGTGAAGGTGGACAAGG+TGG | 0.521742 | 8.4:-54604251 | MS.gene066897:CDS |
TCCCACATGGAGTGAAGAAT+AGG | 0.524773 | 8.4:-54604439 | MS.gene066897:CDS |
ACCAGTATCATCATCCTCTC+CGG | 0.525146 | 8.4:+54605368 | None:intergenic |
AGAGAGAAGCTACAGAAAGA+TGG | 0.525591 | 8.4:-54603915 | MS.gene066897:CDS |
CTCCAGCATGGAGGTGGTGA+AGG | 0.526322 | 8.4:-54604263 | MS.gene066897:CDS |
ACTTCCCACTTCCGTCTCCA+TGG | 0.527397 | 8.4:+54604145 | None:intergenic |
GGGAAAGAAAATATAGATGT+TGG | 0.529307 | 8.4:-54604371 | MS.gene066897:CDS |
ATTTCAAGGAATTTGTGGAT+GGG | 0.534026 | 8.4:-54604715 | MS.gene066897:CDS |
TGAAGGGACATGAAATCCCC+TGG | 0.538955 | 8.4:+54604520 | None:intergenic |
GCATTAGCTGCATTTCCGGC+AGG | 0.539676 | 8.4:+54604023 | None:intergenic |
GGAGGTGGTGAAGGTGGACA+AGG | 0.539731 | 8.4:-54604254 | MS.gene066897:CDS |
AAATGCTTGATCGAACGTTA+CGG | 0.540516 | 8.4:-54605558 | MS.gene066897:CDS |
AACAAGCTCCAGCATGGAGG+TGG | 0.540605 | 8.4:-54604269 | MS.gene066897:CDS |
AGTAAGCATGAAGTATATGC+TGG | 0.543669 | 8.4:-54604125 | MS.gene066897:CDS |
TGCAATACAGGCTATAATTG+AGG | 0.544373 | 8.4:-54603982 | MS.gene066897:CDS |
GATTTCAAGGAATTTGTGGA+TGG | 0.550385 | 8.4:-54604716 | MS.gene066897:CDS |
TCTGATATGAATCTCATCAC+TGG | 0.553185 | 8.4:-54605324 | MS.gene066897:intron |
AAGACGTGTTCTGTCGGAGC+TGG | 0.553482 | 8.4:-54605463 | MS.gene066897:CDS |
TTTGTTCATTATAGTGGACA+TGG | 0.555229 | 8.4:-54605411 | MS.gene066897:CDS |
TGCAAAGCCTGCCATGGAGA+CGG | 0.557128 | 8.4:-54604156 | MS.gene066897:CDS |
TGAGGATGCTATTGAGTCCA+GGG | 0.557708 | 8.4:-54604537 | MS.gene066897:CDS |
TCGTCGTACACGGAGCCGAC+AGG | 0.559875 | 8.4:-54605495 | MS.gene066897:CDS |
AAGCGCGGTCTTCCAAGCGG+TGG | 0.560038 | 8.4:-54604095 | MS.gene066897:CDS |
AGAGAGCACAAAGGGAGAAG+AGG | 0.560245 | 8.4:-54604609 | MS.gene066897:CDS |
TGATCACTGCAATAGAGTCC+TGG | 0.562515 | 8.4:+54603879 | None:intergenic |
CAGCATGGAGGTGGTGAAGG+TGG | 0.564016 | 8.4:-54604260 | MS.gene066897:CDS |
AGCGCGGTCTTCCAAGCGGT+GGG | 0.574258 | 8.4:-54604094 | MS.gene066897:CDS |
GATGGATTCACTCAAAAGCC+AGG | 0.574901 | 8.4:-54603897 | MS.gene066897:CDS |
ATGGGGTTCCTAGAGGATGT+AGG | 0.576033 | 8.4:-54604697 | MS.gene066897:CDS |
TGGCTTGATTGAAGAAGCTA+AGG | 0.577289 | 8.4:-54604642 | MS.gene066897:CDS |
ATACTCGGAGCTTATTCTCA+AGG | 0.577748 | 8.4:-54603940 | MS.gene066897:CDS |
GTGGTGAAGGTGGACAAGGT+GGG | 0.577935 | 8.4:-54604250 | MS.gene066897:CDS |
AAGCTGAATGATAATGATGA+GGG | 0.577946 | 8.4:-54604182 | MS.gene066897:CDS |
GGTGGGATATTGGGAATGGT+GGG | 0.579754 | 8.4:-54604233 | MS.gene066897:CDS |
GTGATGAGATTCATATCAGA+AGG | 0.580568 | 8.4:+54605327 | None:intergenic |
CTGGTCAGATCTTCGGAGGA+CGG | 0.581935 | 8.4:-54605444 | MS.gene066897:CDS |
TCTGCTTAAGTATATCAATG+AGG | 0.583793 | 8.4:+54604399 | None:intergenic |
TGATGGTGCAATTACATACT+CGG | 0.584306 | 8.4:-54603955 | MS.gene066897:CDS |
AAAGCTGAATGATAATGATG+AGG | 0.590743 | 8.4:-54604183 | MS.gene066897:CDS |
ATGGTCAGCCTACATCCTCT+AGG | 0.591604 | 8.4:+54604689 | None:intergenic |
ATCTTGAACAAGCTCCAGCA+TGG | 0.591703 | 8.4:-54604275 | MS.gene066897:CDS |
GGGATATGCAAAGCCTGCCA+TGG | 0.591792 | 8.4:-54604162 | MS.gene066897:CDS |
CTTTCTGCATAGGAAAGTTG+AGG | 0.592352 | 8.4:-54604555 | MS.gene066897:CDS |
AAAGCCTGATAATCCAAAGC+CGG | 0.593904 | 8.4:+54604574 | None:intergenic |
ATATACTTAAGCAGAAAACT+GGG | 0.608702 | 8.4:-54604391 | MS.gene066897:CDS |
GACCTATTCTTCACTCCATG+TGG | 0.610109 | 8.4:+54604437 | None:intergenic |
CCTGCCATGGAGACGGAAGT+GGG | 0.610405 | 8.4:-54604149 | MS.gene066897:CDS |
GTATGACGACGCAATCCTGA+AGG | 0.612914 | 8.4:+54604503 | None:intergenic |
ACAAGGTGGGATATTGGGAA+TGG | 0.615477 | 8.4:-54604237 | MS.gene066897:CDS |
GAACATAAGACGTGTTCTGT+CGG | 0.616617 | 8.4:-54605469 | MS.gene066897:CDS |
TTGTTCATTATAGTGGACAT+GGG | 0.616864 | 8.4:-54605410 | MS.gene066897:CDS |
GATGCGTAAACGACGTGTGG+AGG | 0.622173 | 8.4:-54605587 | MS.gene066897:CDS |
ATATCAATGAGGGTTGAAAG+TGG | 0.625536 | 8.4:+54604410 | None:intergenic |
TCTGATTCATGCCACAGTGG+TGG | 0.633718 | 8.4:-54604662 | MS.gene066897:CDS |
GATTGCGTCGTCATACACAC+AGG | 0.635567 | 8.4:-54604496 | MS.gene066897:CDS |
GCAGATAGGAGAGAGCACAA+AGG | 0.640959 | 8.4:-54604618 | MS.gene066897:CDS |
GAGGATGCGTAAACGACGTG+TGG | 0.642474 | 8.4:-54605590 | MS.gene066897:CDS |
ACCTATTCTTCACTCCATGT+GGG | 0.644192 | 8.4:+54604438 | None:intergenic |
GTGGCATGAATCAGATACAA+TGG | 0.644776 | 8.4:+54604670 | None:intergenic |
ATATAGATGTTGGTCAACTG+AGG | 0.645754 | 8.4:-54604361 | MS.gene066897:CDS |
GCTATAATTGAGGAGACTGA+TGG | 0.648617 | 8.4:-54603972 | MS.gene066897:CDS |
CGACACGGATTCGTCGTACA+CGG | 0.650792 | 8.4:-54605505 | MS.gene066897:CDS |
TTTGTGGATGGGGTTCCTAG+AGG | 0.655242 | 8.4:-54604704 | MS.gene066897:CDS |
TATGACGACGCAATCCTGAA+GGG | 0.661269 | 8.4:+54604504 | None:intergenic |
GGAACAAAAGCAGAGTTACG+AGG | 0.662090 | 8.4:-54605609 | MS.gene066897:CDS |
AGCGGTGGGATTCTGATGAG+TGG | 0.665248 | 8.4:-54604080 | MS.gene066897:CDS |
AGGGATATCGAACTCCCACA+TGG | 0.666782 | 8.4:-54604452 | MS.gene066897:CDS |
GGAGCTGGTCAGATCTTCGG+AGG | 0.668358 | 8.4:-54605448 | MS.gene066897:CDS |
TTGATCGGAATCAACTACCC+AGG | 0.668541 | 8.4:-54605630 | MS.gene066897:CDS |
GAGGATGCTATTGAGTCCAG+GGG | 0.685580 | 8.4:-54604536 | MS.gene066897:CDS |
TCTTCCTGCTGAAACCGGAG+AGG | 0.694590 | 8.4:-54605382 | MS.gene066897:CDS |
TCAAAGCGCGGTCTTCCAAG+CGG | 0.707343 | 8.4:-54604098 | MS.gene066897:CDS |
ACAAGAAAGGATCATCAACA+TGG | 0.709272 | 8.4:+54603856 | None:intergenic |
TTGAACAAGCTCCAGCATGG+AGG | 0.724624 | 8.4:-54604272 | MS.gene066897:CDS |
TATGCTGGATCGTCAAAGCG+CGG | 0.728471 | 8.4:-54604110 | MS.gene066897:CDS |
ATTGCGTCGTCATACACACA+GGG | 0.734226 | 8.4:-54604495 | MS.gene066897:CDS |
CTTCAATCAAGCCACCACTG+TGG | 0.744555 | 8.4:+54604651 | None:intergenic |
GTATCTGATTCATGCCACAG+TGG | 0.772525 | 8.4:-54604665 | MS.gene066897:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAGTATACATGAATATAA+AGG | - | chr8.4:54604599-54604618 | MS.gene066897:CDS | 15.0% |
!!! | AATGTTTAATTTTGTGATTT+TGG | - | chr8.4:54604296-54604315 | MS.gene066897:CDS | 15.0% |
!! | AAATAAAAACAGAGAGAAAA+AGG | + | chr8.4:54604243-54604262 | None:intergenic | 20.0% |
!! | AGAGAAAAAGGTAAATAAAA+AGG | + | chr8.4:54604231-54604250 | None:intergenic | 20.0% |
!!! | TTTGATTTGATTTGATGATA+AGG | - | chr8.4:54604418-54604437 | MS.gene066897:CDS | 20.0% |
! | ATATACTTAAGCAGAAAACT+GGG | - | chr8.4:54605108-54605127 | MS.gene066897:intron | 25.0% |
! | ATGAAGAAACAAATGAAGAT+AGG | - | chr8.4:54605027-54605046 | MS.gene066897:intron | 25.0% |
! | ATGAATATAAAGGAACAGAA+GGG | - | chr8.4:54604609-54604628 | MS.gene066897:CDS | 25.0% |
! | ATGTTATTAGTGAGTAGTAA+TGG | - | chr8.4:54604722-54604741 | MS.gene066897:CDS | 25.0% |
! | CTCAATTAAAATTCGAACAT+TGG | + | chr8.4:54604566-54604585 | None:intergenic | 25.0% |
! | TGAAGAAACAAATGAAGATA+GGG | - | chr8.4:54605028-54605047 | MS.gene066897:intron | 25.0% |
! | TTCATAAACTTCTTCACTTT+AGG | + | chr8.4:54605200-54605219 | None:intergenic | 25.0% |
!! | ATGTCTGGAATCTTTATATA+GGG | - | chr8.4:54604691-54604710 | MS.gene066897:CDS | 25.0% |
!!! | GAGTAGTTTTTTCTTTTTCT+TGG | + | chr8.4:54604207-54604226 | None:intergenic | 25.0% |
ATTTCAAGGAATTTGTGGAT+GGG | - | chr8.4:54604784-54604803 | MS.gene066897:intron | 30.0% | |
CATGAATATAAAGGAACAGA+AGG | - | chr8.4:54604608-54604627 | MS.gene066897:CDS | 30.0% | |
CTGCTTAAGTATATCAATGA+GGG | + | chr8.4:54605102-54605121 | None:intergenic | 30.0% | |
GATATACTTAAGCAGAAAAC+TGG | - | chr8.4:54605107-54605126 | MS.gene066897:intron | 30.0% | |
GGGAAAGAAAATATAGATGT+TGG | - | chr8.4:54605128-54605147 | MS.gene066897:intron | 30.0% | |
TCTGCTTAAGTATATCAATG+AGG | + | chr8.4:54605103-54605122 | None:intergenic | 30.0% | |
TGATGATTTCAAGGAATTTG+TGG | - | chr8.4:54604779-54604798 | MS.gene066897:intron | 30.0% | |
! | AAAGCTGAATGATAATGATG+AGG | - | chr8.4:54605316-54605335 | MS.gene066897:intron | 30.0% |
! | AAGCTGAATGATAATGATGA+GGG | - | chr8.4:54605317-54605336 | MS.gene066897:intron | 30.0% |
! | ACGAAAAAAGCTGTATTGAT+CGG | - | chr8.4:54603854-54603873 | MS.gene066897:CDS | 30.0% |
! | CATGTCTGGAATCTTTATAT+AGG | - | chr8.4:54604690-54604709 | MS.gene066897:CDS | 30.0% |
! | CTTTTGCTTAAGAAACTCTT+GGG | + | chr8.4:54605300-54605319 | None:intergenic | 30.0% |
!! | CTACACTTTTTGACGTTTTT+GGG | - | chr8.4:54605162-54605181 | MS.gene066897:intron | 30.0% |
!! | TAAAATTCGAACATTGGTTC+CGG | + | chr8.4:54604560-54604579 | None:intergenic | 30.0% |
!! | TACACTTTTTGACGTTTTTG+GGG | - | chr8.4:54605163-54605182 | MS.gene066897:intron | 30.0% |
!! | TTGTTCATTATAGTGGACAT+GGG | - | chr8.4:54604089-54604108 | MS.gene066897:CDS | 30.0% |
!! | TTTGTTCATTATAGTGGACA+TGG | - | chr8.4:54604088-54604107 | MS.gene066897:CDS | 30.0% |
AAATGCTTGATCGAACGTTA+CGG | - | chr8.4:54603941-54603960 | MS.gene066897:CDS | 35.0% | |
ACAAGAAAGGATCATCAACA+TGG | + | chr8.4:54605646-54605665 | None:intergenic | 35.0% | |
AGTAAGCATGAAGTATATGC+TGG | - | chr8.4:54605374-54605393 | MS.gene066897:CDS | 35.0% | |
AGTTAAGATTGTCTCCATAG+TGG | - | chr8.4:54604511-54604530 | MS.gene066897:CDS | 35.0% | |
ATAAGCATTAGCTGCATTTC+CGG | + | chr8.4:54605483-54605502 | None:intergenic | 35.0% | |
ATATAGATGTTGGTCAACTG+AGG | - | chr8.4:54605138-54605157 | MS.gene066897:intron | 35.0% | |
ATATCAATGAGGGTTGAAAG+TGG | + | chr8.4:54605092-54605111 | None:intergenic | 35.0% | |
CAAAACAGTGATGTCATCTT+CGG | + | chr8.4:54603972-54603991 | None:intergenic | 35.0% | |
GATTTCAAGGAATTTGTGGA+TGG | - | chr8.4:54604783-54604802 | MS.gene066897:intron | 35.0% | |
GTGAACAGATGATGATTTCA+AGG | - | chr8.4:54604770-54604789 | MS.gene066897:intron | 35.0% | |
GTGATGAGATTCATATCAGA+AGG | + | chr8.4:54604175-54604194 | None:intergenic | 35.0% | |
TCTGATATGAATCTCATCAC+TGG | - | chr8.4:54604175-54604194 | MS.gene066897:CDS | 35.0% | |
TGCAATACAGGCTATAATTG+AGG | - | chr8.4:54605517-54605536 | MS.gene066897:CDS | 35.0% | |
TTTCAAGGAATTTGTGGATG+GGG | - | chr8.4:54604785-54604804 | MS.gene066897:intron | 35.0% | |
! | CCAAAAACGTCAAAAAGTGT+AGG | + | chr8.4:54605164-54605183 | None:intergenic | 35.0% |
! | CTGCTGTTTGTTCATTATAG+TGG | - | chr8.4:54604082-54604101 | MS.gene066897:CDS | 35.0% |
! | GCTTTTGCTTAAGAAACTCT+TGG | + | chr8.4:54605301-54605320 | None:intergenic | 35.0% |
! | TGATGGTGCAATTACATACT+CGG | - | chr8.4:54605544-54605563 | MS.gene066897:CDS | 35.0% |
! | TTGATGATAAGGAATCTCCA+GGG | - | chr8.4:54604429-54604448 | MS.gene066897:CDS | 35.0% |
! | TTTGATGATAAGGAATCTCC+AGG | - | chr8.4:54604428-54604447 | MS.gene066897:CDS | 35.0% |
! | TTTTGTGATTTTGGATCCTG+TGG | - | chr8.4:54604305-54604324 | MS.gene066897:CDS | 35.0% |
!! | CCTACACTTTTTGACGTTTT+TGG | - | chr8.4:54605161-54605180 | MS.gene066897:intron | 35.0% |
AAAGCCTGATAATCCAAAGC+CGG | + | chr8.4:54604928-54604947 | None:intergenic | 40.0% | |
ACCTATTCTTCACTCCATGT+GGG | + | chr8.4:54605064-54605083 | None:intergenic | 40.0% | |
AGAGAGAAGCTACAGAAAGA+TGG | - | chr8.4:54605584-54605603 | MS.gene066897:CDS | 40.0% | |
AGCTTTCAGCAATGCAATAC+AGG | - | chr8.4:54605505-54605524 | MS.gene066897:CDS | 40.0% | |
ATACTCGGAGCTTATTCTCA+AGG | - | chr8.4:54605559-54605578 | MS.gene066897:CDS | 40.0% | |
CGTCTTATGTTCTTTCCTGT+CGG | + | chr8.4:54604022-54604041 | None:intergenic | 40.0% | |
CTTTCTGCATAGGAAAGTTG+AGG | - | chr8.4:54604944-54604963 | MS.gene066897:intron | 40.0% | |
GAACATAAGACGTGTTCTGT+CGG | - | chr8.4:54604030-54604049 | MS.gene066897:CDS | 40.0% | |
GATTATCAGGCTTTCTGCAT+AGG | - | chr8.4:54604934-54604953 | MS.gene066897:intron | 40.0% | |
GCTATAATTGAGGAGACTGA+TGG | - | chr8.4:54605527-54605546 | MS.gene066897:CDS | 40.0% | |
GGAAATGCAGCTAATGCTTA+TGG | - | chr8.4:54605482-54605501 | MS.gene066897:CDS | 40.0% | |
GTGGCATGAATCAGATACAA+TGG | + | chr8.4:54604832-54604851 | None:intergenic | 40.0% | |
TGGCTTGATTGAAGAAGCTA+AGG | - | chr8.4:54604857-54604876 | MS.gene066897:intron | 40.0% | |
!! | GTAACTCTGCTTTTGTTCCT+GGG | + | chr8.4:54603889-54603908 | None:intergenic | 40.0% |
!!! | CATCACTGTTTTGATCGACA+CGG | - | chr8.4:54603979-54603998 | MS.gene066897:CDS | 40.0% |
AAGGGAGAAGAGGAACATTC+TGG | - | chr8.4:54604900-54604919 | MS.gene066897:intron | 45.0% | |
ACAAGGTGGGATATTGGGAA+TGG | - | chr8.4:54605262-54605281 | MS.gene066897:intron | 45.0% | |
ACCAGTATCATCATCCTCTC+CGG | + | chr8.4:54604134-54604153 | None:intergenic | 45.0% | |
ATCTTGAACAAGCTCCAGCA+TGG | - | chr8.4:54605224-54605243 | MS.gene066897:intron | 45.0% | |
ATTGCGTCGTCATACACACA+GGG | - | chr8.4:54605004-54605023 | MS.gene066897:intron | 45.0% | |
CAACTTTCAGCTGTAACCAC+AGG | + | chr8.4:54604324-54604343 | None:intergenic | 45.0% | |
GAAGAAGCTAAGGAGCAGAT+AGG | - | chr8.4:54604867-54604886 | MS.gene066897:intron | 45.0% | |
GAAGAGGAACATTCTGGATC+CGG | - | chr8.4:54604906-54604925 | MS.gene066897:intron | 45.0% | |
GACCTATTCTTCACTCCATG+TGG | + | chr8.4:54605065-54605084 | None:intergenic | 45.0% | |
GATTCCGGTCAATTCCACTA+TGG | + | chr8.4:54604528-54604547 | None:intergenic | 45.0% | |
GGAACAAAAGCAGAGTTACG+AGG | - | chr8.4:54603890-54603909 | MS.gene066897:CDS | 45.0% | |
GTATCTGATTCATGCCACAG+TGG | - | chr8.4:54604834-54604853 | MS.gene066897:intron | 45.0% | |
TATGACGACGCAATCCTGAA+GGG | + | chr8.4:54604998-54605017 | None:intergenic | 45.0% | |
TCCCACATGGAGTGAAGAAT+AGG | - | chr8.4:54605060-54605079 | MS.gene066897:intron | 45.0% | |
TGAGGATGCTATTGAGTCCA+GGG | - | chr8.4:54604962-54604981 | MS.gene066897:intron | 45.0% | |
TGATAAGGAATCTCCAGGGA+CGG | - | chr8.4:54604433-54604452 | MS.gene066897:CDS | 45.0% | |
TGATCACTGCAATAGAGTCC+TGG | + | chr8.4:54605623-54605642 | None:intergenic | 45.0% | |
TTGAGGATGCTATTGAGTCC+AGG | - | chr8.4:54604961-54604980 | MS.gene066897:intron | 45.0% | |
TTGATCGGAATCAACTACCC+AGG | - | chr8.4:54603869-54603888 | MS.gene066897:CDS | 45.0% | |
TTTGTAGTCTCGTGCATGTC+TGG | - | chr8.4:54604676-54604695 | MS.gene066897:CDS | 45.0% | |
! | CAGATAGGAGAGAGCACAAA+GGG | - | chr8.4:54604882-54604901 | MS.gene066897:intron | 45.0% |
! | GATGGATTCACTCAAAAGCC+AGG | - | chr8.4:54605602-54605621 | MS.gene066897:CDS | 45.0% |
! | GTCTCCATAGTGGAATTGAC+CGG | - | chr8.4:54604521-54604540 | MS.gene066897:CDS | 45.0% |
!! | AATTCGAACATTGGTTCCGG+AGG | + | chr8.4:54604557-54604576 | None:intergenic | 45.0% |
!! | CGTAACTCTGCTTTTGTTCC+TGG | + | chr8.4:54603890-54603909 | None:intergenic | 45.0% |
AAGGAACAGAAGGGAACGTG+TGG | - | chr8.4:54604618-54604637 | MS.gene066897:CDS | 50.0% | |
ACCGGAGAGGATGATGATAC+TGG | - | chr8.4:54604130-54604149 | MS.gene066897:CDS | 50.0% | |
ACTCGTCTTCCTGCTGAAAC+CGG | - | chr8.4:54604112-54604131 | MS.gene066897:CDS | 50.0% | |
AGGGATATCGAACTCCCACA+TGG | - | chr8.4:54605047-54605066 | MS.gene066897:intron | 50.0% | |
AGGGGATTTCATGTCCCTTC+AGG | - | chr8.4:54604981-54605000 | MS.gene066897:intron | 50.0% | |
AGGTGGACAAGGTGGGATAT+TGG | - | chr8.4:54605256-54605275 | MS.gene066897:intron | 50.0% | |
AGGTGGGATATTGGGAATGG+TGG | - | chr8.4:54605265-54605284 | MS.gene066897:intron | 50.0% | |
ATGGGGTTCCTAGAGGATGT+AGG | - | chr8.4:54604802-54604821 | MS.gene066897:intron | 50.0% | |
ATGGTCAGCCTACATCCTCT+AGG | + | chr8.4:54604813-54604832 | None:intergenic | 50.0% | |
CTTCAATCAAGCCACCACTG+TGG | + | chr8.4:54604851-54604870 | None:intergenic | 50.0% | |
CTTGTAGAGAATTCCGTCCC+TGG | + | chr8.4:54604449-54604468 | None:intergenic | 50.0% | |
GAACATTCTGGATCCGGCTT+TGG | - | chr8.4:54604912-54604931 | MS.gene066897:intron | 50.0% | |
GACAAGCATCTGCTGAAGTC+TGG | + | chr8.4:54605457-54605476 | None:intergenic | 50.0% | |
GAGGATGCTATTGAGTCCAG+GGG | - | chr8.4:54604963-54604982 | MS.gene066897:intron | 50.0% | |
GATTGCGTCGTCATACACAC+AGG | - | chr8.4:54605003-54605022 | MS.gene066897:intron | 50.0% | |
GGTGGACAAGGTGGGATATT+GGG | - | chr8.4:54605257-54605276 | MS.gene066897:intron | 50.0% | |
GGTGGGATATTGGGAATGGT+GGG | - | chr8.4:54605266-54605285 | MS.gene066897:intron | 50.0% | |
GTATGACGACGCAATCCTGA+AGG | + | chr8.4:54604999-54605018 | None:intergenic | 50.0% | |
TATGCTGGATCGTCAAAGCG+CGG | - | chr8.4:54605389-54605408 | MS.gene066897:CDS | 50.0% | |
TCTGATTCATGCCACAGTGG+TGG | - | chr8.4:54604837-54604856 | MS.gene066897:intron | 50.0% | |
TGAAGGGACATGAAATCCCC+TGG | + | chr8.4:54604982-54605001 | None:intergenic | 50.0% | |
TTCCGGAGGTTGTGAGATTC+CGG | + | chr8.4:54604543-54604562 | None:intergenic | 50.0% | |
TTGAACAAGCTCCAGCATGG+AGG | - | chr8.4:54605227-54605246 | MS.gene066897:intron | 50.0% | |
TTTGTGGATGGGGTTCCTAG+AGG | - | chr8.4:54604795-54604814 | MS.gene066897:intron | 50.0% | |
! | AGAGAGCACAAAGGGAGAAG+AGG | - | chr8.4:54604890-54604909 | MS.gene066897:intron | 50.0% |
! | GCAGATAGGAGAGAGCACAA+AGG | - | chr8.4:54604881-54604900 | MS.gene066897:intron | 50.0% |
!! | GGATCCGGCTTTGGATTATC+AGG | - | chr8.4:54604921-54604940 | MS.gene066897:intron | 50.0% |
AACAAGCTCCAGCATGGAGG+TGG | - | chr8.4:54605230-54605249 | MS.gene066897:intron | 55.0% | |
AAGACGTGTTCTGTCGGAGC+TGG | - | chr8.4:54604036-54604055 | MS.gene066897:CDS | 55.0% | |
ACTTCCCACTTCCGTCTCCA+TGG | + | chr8.4:54605357-54605376 | None:intergenic | 55.0% | |
AGCGGTGGGATTCTGATGAG+TGG | - | chr8.4:54605419-54605438 | MS.gene066897:CDS | 55.0% | |
CGACACGGATTCGTCGTACA+CGG | - | chr8.4:54603994-54604013 | MS.gene066897:CDS | 55.0% | |
CTCATCAGAATCCCACCGCT+TGG | + | chr8.4:54605419-54605438 | None:intergenic | 55.0% | |
CTGGTCAGATCTTCGGAGGA+CGG | - | chr8.4:54604055-54604074 | MS.gene066897:CDS | 55.0% | |
GACCGGAATCTCACAACCTC+CGG | - | chr8.4:54604538-54604557 | MS.gene066897:CDS | 55.0% | |
GAGGATGCGTAAACGACGTG+TGG | - | chr8.4:54603909-54603928 | MS.gene066897:CDS | 55.0% | |
GATGCGTAAACGACGTGTGG+AGG | - | chr8.4:54603912-54603931 | MS.gene066897:CDS | 55.0% | |
GCATTAGCTGCATTTCCGGC+AGG | + | chr8.4:54605479-54605498 | None:intergenic | 55.0% | |
GGGATATGCAAAGCCTGCCA+TGG | - | chr8.4:54605337-54605356 | MS.gene066897:CDS | 55.0% | |
GTCGGAGCTGGTCAGATCTT+CGG | - | chr8.4:54604048-54604067 | MS.gene066897:CDS | 55.0% | |
GTGGTGAAGGTGGACAAGGT+GGG | - | chr8.4:54605249-54605268 | MS.gene066897:intron | 55.0% | |
TCAAAGCGCGGTCTTCCAAG+CGG | - | chr8.4:54605401-54605420 | MS.gene066897:CDS | 55.0% | |
TCAGCAGATGCTTGTCCTGC+CGG | - | chr8.4:54605461-54605480 | MS.gene066897:CDS | 55.0% | |
TCATCCTCTCCGGTTTCAGC+AGG | + | chr8.4:54604124-54604143 | None:intergenic | 55.0% | |
TCTTCCTGCTGAAACCGGAG+AGG | - | chr8.4:54604117-54604136 | MS.gene066897:CDS | 55.0% | |
TGCAAAGCCTGCCATGGAGA+CGG | - | chr8.4:54605343-54605362 | MS.gene066897:CDS | 55.0% | |
CACCTTCACCACCTCCATGC+TGG | + | chr8.4:54605241-54605260 | None:intergenic | 60.0% | |
CAGCATGGAGGTGGTGAAGG+TGG | - | chr8.4:54605239-54605258 | MS.gene066897:intron | 60.0% | |
CCTGCCATGGAGACGGAAGT+GGG | - | chr8.4:54605350-54605369 | MS.gene066897:CDS | 60.0% | |
CTCCAGCATGGAGGTGGTGA+AGG | - | chr8.4:54605236-54605255 | MS.gene066897:intron | 60.0% | |
GGAGCTGGTCAGATCTTCGG+AGG | - | chr8.4:54604051-54604070 | MS.gene066897:CDS | 60.0% | |
GGAGGTGGTGAAGGTGGACA+AGG | - | chr8.4:54605245-54605264 | MS.gene066897:intron | 60.0% | |
GGTGGTGAAGGTGGACAAGG+TGG | - | chr8.4:54605248-54605267 | MS.gene066897:intron | 60.0% | |
AAGCGCGGTCTTCCAAGCGG+TGG | - | chr8.4:54605404-54605423 | MS.gene066897:CDS | 65.0% | |
AGCGCGGTCTTCCAAGCGGT+GGG | - | chr8.4:54605405-54605424 | MS.gene066897:CDS | 65.0% | |
CCCACTTCCGTCTCCATGGC+AGG | + | chr8.4:54605353-54605372 | None:intergenic | 65.0% | |
GCCTGCCATGGAGACGGAAG+TGG | - | chr8.4:54605349-54605368 | MS.gene066897:CDS | 65.0% | |
TCGTCGTACACGGAGCCGAC+AGG | - | chr8.4:54604004-54604023 | MS.gene066897:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 54603851 | 54605670 | 54603851 | ID=MS.gene066897 |
chr8.4 | mRNA | 54603851 | 54605670 | 54603851 | ID=MS.gene066897.t1;Parent=MS.gene066897 |
chr8.4 | exon | 54605325 | 54605670 | 54605325 | ID=MS.gene066897.t1.exon1;Parent=MS.gene066897.t1 |
chr8.4 | CDS | 54605325 | 54605670 | 54605325 | ID=cds.MS.gene066897.t1;Parent=MS.gene066897.t1 |
chr8.4 | exon | 54603851 | 54604743 | 54603851 | ID=MS.gene066897.t1.exon2;Parent=MS.gene066897.t1 |
chr8.4 | CDS | 54603851 | 54604743 | 54603851 | ID=cds.MS.gene066897.t1;Parent=MS.gene066897.t1 |
Gene Sequence |
Protein sequence |