AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066897


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066897.t1 MTR_8g447080 98.058 412 8 0 1 412 1 412 0.0 833
MS.gene066897.t1 MTR_2g063570 65.865 416 120 6 1 412 4 401 0.0 538
MS.gene066897.t1 MTR_7g088035 53.548 155 68 2 5 156 9 162 7.29e-49 169
MS.gene066897.t1 MTR_7g088035 51.807 83 40 0 329 411 231 313 3.77e-22 96.7
MS.gene066897.t1 MTR_0340s0030 32.353 170 99 2 3 158 4 171 7.26e-24 100
MS.gene066897.t1 MTR_7g451400 38.000 150 86 4 3 146 74 222 2.00e-23 100
MS.gene066897.t1 MTR_2g008990 37.584 149 88 3 3 146 116 264 2.13e-20 92.8
MS.gene066897.t1 MTR_2g008990 37.584 149 88 3 3 146 116 264 2.45e-20 92.8
MS.gene066897.t1 MTR_2g008990 37.584 149 88 3 3 146 116 264 2.49e-20 92.8
MS.gene066897.t1 MTR_4g094202 36.184 152 88 4 2 146 100 249 6.08e-19 88.2
MS.gene066897.t1 MTR_2g008970 34.437 151 91 3 3 146 88 237 7.18e-18 84.7
MS.gene066897.t1 MTR_4g094210 34.899 149 91 4 3 146 116 263 1.45e-17 84.3
MS.gene066897.t1 MTR_2g008970 34.437 151 91 3 3 146 88 237 1.78e-17 83.2
MS.gene066897.t1 MTR_2g008980 32.237 152 95 5 2 146 109 259 4.82e-15 75.1
MS.gene066897.t1 MTR_2g008980 32.450 151 94 5 3 146 110 259 9.31e-15 75.9
MS.gene066897.t1 MTR_2g008980 32.450 151 94 5 3 146 110 259 1.07e-14 75.5
MS.gene066897.t1 MTR_2g008980 32.237 152 95 5 2 146 109 259 1.68e-14 74.7
MS.gene066897.t1 MTR_1g054545 35.455 110 65 2 3 106 16 125 1.07e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066897.t1 AT1G79340 66.745 424 123 6 1 412 1 418 0.0 557
MS.gene066897.t1 AT1G79330 65.952 420 125 6 1 412 1 410 0.0 550
MS.gene066897.t1 AT1G79310 55.924 422 157 9 1 412 1 403 1.28e-158 453
MS.gene066897.t1 AT1G79320 57.488 414 128 6 1 412 1 368 5.36e-158 450
MS.gene066897.t1 AT1G16420 41.801 433 178 10 1 412 1 380 2.62e-98 298
MS.gene066897.t1 AT5G04200 36.516 419 156 12 1 411 6 322 1.40e-72 230
MS.gene066897.t1 AT1G02170 38.255 149 86 4 3 146 80 227 1.32e-23 101
MS.gene066897.t1 AT4G25110 37.162 148 88 3 3 146 116 262 1.21e-22 99.4
MS.gene066897.t1 AT4G25110 36.913 149 88 4 3 146 116 263 1.03e-21 96.7
MS.gene066897.t1 AT5G64240 34.228 149 92 3 3 146 90 237 2.54e-18 86.3
MS.gene066897.t1 AT5G64240 34.228 149 92 3 3 146 90 237 2.85e-18 85.1

Find 115 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATACTTAAGCAGAAAAC+TGG 0.288159 8.4:-54604392 MS.gene066897:CDS
GGATCCGGCTTTGGATTATC+AGG 0.289069 8.4:-54604578 MS.gene066897:CDS
ATAAGCATTAGCTGCATTTC+CGG 0.302115 8.4:+54604019 None:intergenic
TTCATAAACTTCTTCACTTT+AGG 0.312797 8.4:+54604302 None:intergenic
GGTGGACAAGGTGGGATATT+GGG 0.325642 8.4:-54604242 MS.gene066897:CDS
CTGCTGTTTGTTCATTATAG+TGG 0.327931 8.4:-54605417 MS.gene066897:CDS
ATGAAGAAACAAATGAAGAT+AGG 0.350793 8.4:-54604472 MS.gene066897:CDS
AGGGGATTTCATGTCCCTTC+AGG 0.372762 8.4:-54604518 MS.gene066897:CDS
GGAAATGCAGCTAATGCTTA+TGG 0.373990 8.4:-54604017 MS.gene066897:CDS
GAACATTCTGGATCCGGCTT+TGG 0.378094 8.4:-54604587 MS.gene066897:CDS
AGGTGGACAAGGTGGGATAT+TGG 0.378468 8.4:-54604243 MS.gene066897:CDS
AAGGGAGAAGAGGAACATTC+TGG 0.411416 8.4:-54604599 MS.gene066897:CDS
GTCGGAGCTGGTCAGATCTT+CGG 0.416923 8.4:-54605451 MS.gene066897:CDS
CCCACTTCCGTCTCCATGGC+AGG 0.428897 8.4:+54604149 None:intergenic
GACAAGCATCTGCTGAAGTC+TGG 0.432339 8.4:+54604045 None:intergenic
CACCTTCACCACCTCCATGC+TGG 0.437332 8.4:+54604261 None:intergenic
CAAAACAGTGATGTCATCTT+CGG 0.443836 8.4:+54605530 None:intergenic
AGCTTTCAGCAATGCAATAC+AGG 0.451961 8.4:-54603994 MS.gene066897:CDS
ACTCGTCTTCCTGCTGAAAC+CGG 0.458013 8.4:-54605387 MS.gene066897:CDS
TGATGATTTCAAGGAATTTG+TGG 0.462771 8.4:-54604720 MS.gene066897:CDS
TCAGCAGATGCTTGTCCTGC+CGG 0.466394 8.4:-54604038 MS.gene066897:CDS
GATTATCAGGCTTTCTGCAT+AGG 0.478422 8.4:-54604565 MS.gene066897:CDS
ACCGGAGAGGATGATGATAC+TGG 0.478656 8.4:-54605369 MS.gene066897:CDS
CAGATAGGAGAGAGCACAAA+GGG 0.484810 8.4:-54604617 MS.gene066897:CDS
GTGAACAGATGATGATTTCA+AGG 0.489198 8.4:-54604729 MS.gene066897:intron
GAAGAGGAACATTCTGGATC+CGG 0.491474 8.4:-54604593 MS.gene066897:CDS
CGTCTTATGTTCTTTCCTGT+CGG 0.492887 8.4:+54605480 None:intergenic
TGAAGAAACAAATGAAGATA+GGG 0.494506 8.4:-54604471 MS.gene066897:CDS
AAAACATATCAGCACAAGAA+AGG 0.502276 8.4:+54603843 None:intergenic
GCCTGCCATGGAGACGGAAG+TGG 0.502627 8.4:-54604150 MS.gene066897:CDS
CTGCTTAAGTATATCAATGA+GGG 0.508162 8.4:+54604400 None:intergenic
CTCATCAGAATCCCACCGCT+TGG 0.508389 8.4:+54604083 None:intergenic
AGGTGGGATATTGGGAATGG+TGG 0.508525 8.4:-54604234 MS.gene066897:CDS
TCATCCTCTCCGGTTTCAGC+AGG 0.511272 8.4:+54605378 None:intergenic
TTTCAAGGAATTTGTGGATG+GGG 0.511520 8.4:-54604714 MS.gene066897:CDS
GAAGAAGCTAAGGAGCAGAT+AGG 0.515777 8.4:-54604632 MS.gene066897:CDS
TTGAGGATGCTATTGAGTCC+AGG 0.518832 8.4:-54604538 MS.gene066897:CDS
GGTGGTGAAGGTGGACAAGG+TGG 0.521742 8.4:-54604251 MS.gene066897:CDS
TCCCACATGGAGTGAAGAAT+AGG 0.524773 8.4:-54604439 MS.gene066897:CDS
ACCAGTATCATCATCCTCTC+CGG 0.525146 8.4:+54605368 None:intergenic
AGAGAGAAGCTACAGAAAGA+TGG 0.525591 8.4:-54603915 MS.gene066897:CDS
CTCCAGCATGGAGGTGGTGA+AGG 0.526322 8.4:-54604263 MS.gene066897:CDS
ACTTCCCACTTCCGTCTCCA+TGG 0.527397 8.4:+54604145 None:intergenic
GGGAAAGAAAATATAGATGT+TGG 0.529307 8.4:-54604371 MS.gene066897:CDS
ATTTCAAGGAATTTGTGGAT+GGG 0.534026 8.4:-54604715 MS.gene066897:CDS
TGAAGGGACATGAAATCCCC+TGG 0.538955 8.4:+54604520 None:intergenic
GCATTAGCTGCATTTCCGGC+AGG 0.539676 8.4:+54604023 None:intergenic
GGAGGTGGTGAAGGTGGACA+AGG 0.539731 8.4:-54604254 MS.gene066897:CDS
AAATGCTTGATCGAACGTTA+CGG 0.540516 8.4:-54605558 MS.gene066897:CDS
AACAAGCTCCAGCATGGAGG+TGG 0.540605 8.4:-54604269 MS.gene066897:CDS
AGTAAGCATGAAGTATATGC+TGG 0.543669 8.4:-54604125 MS.gene066897:CDS
TGCAATACAGGCTATAATTG+AGG 0.544373 8.4:-54603982 MS.gene066897:CDS
GATTTCAAGGAATTTGTGGA+TGG 0.550385 8.4:-54604716 MS.gene066897:CDS
TCTGATATGAATCTCATCAC+TGG 0.553185 8.4:-54605324 MS.gene066897:intron
AAGACGTGTTCTGTCGGAGC+TGG 0.553482 8.4:-54605463 MS.gene066897:CDS
TTTGTTCATTATAGTGGACA+TGG 0.555229 8.4:-54605411 MS.gene066897:CDS
TGCAAAGCCTGCCATGGAGA+CGG 0.557128 8.4:-54604156 MS.gene066897:CDS
TGAGGATGCTATTGAGTCCA+GGG 0.557708 8.4:-54604537 MS.gene066897:CDS
TCGTCGTACACGGAGCCGAC+AGG 0.559875 8.4:-54605495 MS.gene066897:CDS
AAGCGCGGTCTTCCAAGCGG+TGG 0.560038 8.4:-54604095 MS.gene066897:CDS
AGAGAGCACAAAGGGAGAAG+AGG 0.560245 8.4:-54604609 MS.gene066897:CDS
TGATCACTGCAATAGAGTCC+TGG 0.562515 8.4:+54603879 None:intergenic
CAGCATGGAGGTGGTGAAGG+TGG 0.564016 8.4:-54604260 MS.gene066897:CDS
AGCGCGGTCTTCCAAGCGGT+GGG 0.574258 8.4:-54604094 MS.gene066897:CDS
GATGGATTCACTCAAAAGCC+AGG 0.574901 8.4:-54603897 MS.gene066897:CDS
ATGGGGTTCCTAGAGGATGT+AGG 0.576033 8.4:-54604697 MS.gene066897:CDS
TGGCTTGATTGAAGAAGCTA+AGG 0.577289 8.4:-54604642 MS.gene066897:CDS
ATACTCGGAGCTTATTCTCA+AGG 0.577748 8.4:-54603940 MS.gene066897:CDS
GTGGTGAAGGTGGACAAGGT+GGG 0.577935 8.4:-54604250 MS.gene066897:CDS
AAGCTGAATGATAATGATGA+GGG 0.577946 8.4:-54604182 MS.gene066897:CDS
GGTGGGATATTGGGAATGGT+GGG 0.579754 8.4:-54604233 MS.gene066897:CDS
GTGATGAGATTCATATCAGA+AGG 0.580568 8.4:+54605327 None:intergenic
CTGGTCAGATCTTCGGAGGA+CGG 0.581935 8.4:-54605444 MS.gene066897:CDS
TCTGCTTAAGTATATCAATG+AGG 0.583793 8.4:+54604399 None:intergenic
TGATGGTGCAATTACATACT+CGG 0.584306 8.4:-54603955 MS.gene066897:CDS
AAAGCTGAATGATAATGATG+AGG 0.590743 8.4:-54604183 MS.gene066897:CDS
ATGGTCAGCCTACATCCTCT+AGG 0.591604 8.4:+54604689 None:intergenic
ATCTTGAACAAGCTCCAGCA+TGG 0.591703 8.4:-54604275 MS.gene066897:CDS
GGGATATGCAAAGCCTGCCA+TGG 0.591792 8.4:-54604162 MS.gene066897:CDS
CTTTCTGCATAGGAAAGTTG+AGG 0.592352 8.4:-54604555 MS.gene066897:CDS
AAAGCCTGATAATCCAAAGC+CGG 0.593904 8.4:+54604574 None:intergenic
ATATACTTAAGCAGAAAACT+GGG 0.608702 8.4:-54604391 MS.gene066897:CDS
GACCTATTCTTCACTCCATG+TGG 0.610109 8.4:+54604437 None:intergenic
CCTGCCATGGAGACGGAAGT+GGG 0.610405 8.4:-54604149 MS.gene066897:CDS
GTATGACGACGCAATCCTGA+AGG 0.612914 8.4:+54604503 None:intergenic
ACAAGGTGGGATATTGGGAA+TGG 0.615477 8.4:-54604237 MS.gene066897:CDS
GAACATAAGACGTGTTCTGT+CGG 0.616617 8.4:-54605469 MS.gene066897:CDS
TTGTTCATTATAGTGGACAT+GGG 0.616864 8.4:-54605410 MS.gene066897:CDS
GATGCGTAAACGACGTGTGG+AGG 0.622173 8.4:-54605587 MS.gene066897:CDS
ATATCAATGAGGGTTGAAAG+TGG 0.625536 8.4:+54604410 None:intergenic
TCTGATTCATGCCACAGTGG+TGG 0.633718 8.4:-54604662 MS.gene066897:CDS
GATTGCGTCGTCATACACAC+AGG 0.635567 8.4:-54604496 MS.gene066897:CDS
GCAGATAGGAGAGAGCACAA+AGG 0.640959 8.4:-54604618 MS.gene066897:CDS
GAGGATGCGTAAACGACGTG+TGG 0.642474 8.4:-54605590 MS.gene066897:CDS
ACCTATTCTTCACTCCATGT+GGG 0.644192 8.4:+54604438 None:intergenic
GTGGCATGAATCAGATACAA+TGG 0.644776 8.4:+54604670 None:intergenic
ATATAGATGTTGGTCAACTG+AGG 0.645754 8.4:-54604361 MS.gene066897:CDS
GCTATAATTGAGGAGACTGA+TGG 0.648617 8.4:-54603972 MS.gene066897:CDS
CGACACGGATTCGTCGTACA+CGG 0.650792 8.4:-54605505 MS.gene066897:CDS
TTTGTGGATGGGGTTCCTAG+AGG 0.655242 8.4:-54604704 MS.gene066897:CDS
TATGACGACGCAATCCTGAA+GGG 0.661269 8.4:+54604504 None:intergenic
GGAACAAAAGCAGAGTTACG+AGG 0.662090 8.4:-54605609 MS.gene066897:CDS
AGCGGTGGGATTCTGATGAG+TGG 0.665248 8.4:-54604080 MS.gene066897:CDS
AGGGATATCGAACTCCCACA+TGG 0.666782 8.4:-54604452 MS.gene066897:CDS
GGAGCTGGTCAGATCTTCGG+AGG 0.668358 8.4:-54605448 MS.gene066897:CDS
TTGATCGGAATCAACTACCC+AGG 0.668541 8.4:-54605630 MS.gene066897:CDS
GAGGATGCTATTGAGTCCAG+GGG 0.685580 8.4:-54604536 MS.gene066897:CDS
TCTTCCTGCTGAAACCGGAG+AGG 0.694590 8.4:-54605382 MS.gene066897:CDS
TCAAAGCGCGGTCTTCCAAG+CGG 0.707343 8.4:-54604098 MS.gene066897:CDS
ACAAGAAAGGATCATCAACA+TGG 0.709272 8.4:+54603856 None:intergenic
TTGAACAAGCTCCAGCATGG+AGG 0.724624 8.4:-54604272 MS.gene066897:CDS
TATGCTGGATCGTCAAAGCG+CGG 0.728471 8.4:-54604110 MS.gene066897:CDS
ATTGCGTCGTCATACACACA+GGG 0.734226 8.4:-54604495 MS.gene066897:CDS
CTTCAATCAAGCCACCACTG+TGG 0.744555 8.4:+54604651 None:intergenic
GTATCTGATTCATGCCACAG+TGG 0.772525 8.4:-54604665 MS.gene066897:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGTATACATGAATATAA+AGG - chr8.4:54604599-54604618 MS.gene066897:CDS 15.0%
!!! AATGTTTAATTTTGTGATTT+TGG - chr8.4:54604296-54604315 MS.gene066897:CDS 15.0%
!! AAATAAAAACAGAGAGAAAA+AGG + chr8.4:54604243-54604262 None:intergenic 20.0%
!! AGAGAAAAAGGTAAATAAAA+AGG + chr8.4:54604231-54604250 None:intergenic 20.0%
!!! TTTGATTTGATTTGATGATA+AGG - chr8.4:54604418-54604437 MS.gene066897:CDS 20.0%
! ATATACTTAAGCAGAAAACT+GGG - chr8.4:54605108-54605127 MS.gene066897:intron 25.0%
! ATGAAGAAACAAATGAAGAT+AGG - chr8.4:54605027-54605046 MS.gene066897:intron 25.0%
! ATGAATATAAAGGAACAGAA+GGG - chr8.4:54604609-54604628 MS.gene066897:CDS 25.0%
! ATGTTATTAGTGAGTAGTAA+TGG - chr8.4:54604722-54604741 MS.gene066897:CDS 25.0%
! CTCAATTAAAATTCGAACAT+TGG + chr8.4:54604566-54604585 None:intergenic 25.0%
! TGAAGAAACAAATGAAGATA+GGG - chr8.4:54605028-54605047 MS.gene066897:intron 25.0%
! TTCATAAACTTCTTCACTTT+AGG + chr8.4:54605200-54605219 None:intergenic 25.0%
!! ATGTCTGGAATCTTTATATA+GGG - chr8.4:54604691-54604710 MS.gene066897:CDS 25.0%
!!! GAGTAGTTTTTTCTTTTTCT+TGG + chr8.4:54604207-54604226 None:intergenic 25.0%
ATTTCAAGGAATTTGTGGAT+GGG - chr8.4:54604784-54604803 MS.gene066897:intron 30.0%
CATGAATATAAAGGAACAGA+AGG - chr8.4:54604608-54604627 MS.gene066897:CDS 30.0%
CTGCTTAAGTATATCAATGA+GGG + chr8.4:54605102-54605121 None:intergenic 30.0%
GATATACTTAAGCAGAAAAC+TGG - chr8.4:54605107-54605126 MS.gene066897:intron 30.0%
GGGAAAGAAAATATAGATGT+TGG - chr8.4:54605128-54605147 MS.gene066897:intron 30.0%
TCTGCTTAAGTATATCAATG+AGG + chr8.4:54605103-54605122 None:intergenic 30.0%
TGATGATTTCAAGGAATTTG+TGG - chr8.4:54604779-54604798 MS.gene066897:intron 30.0%
! AAAGCTGAATGATAATGATG+AGG - chr8.4:54605316-54605335 MS.gene066897:intron 30.0%
! AAGCTGAATGATAATGATGA+GGG - chr8.4:54605317-54605336 MS.gene066897:intron 30.0%
! ACGAAAAAAGCTGTATTGAT+CGG - chr8.4:54603854-54603873 MS.gene066897:CDS 30.0%
! CATGTCTGGAATCTTTATAT+AGG - chr8.4:54604690-54604709 MS.gene066897:CDS 30.0%
! CTTTTGCTTAAGAAACTCTT+GGG + chr8.4:54605300-54605319 None:intergenic 30.0%
!! CTACACTTTTTGACGTTTTT+GGG - chr8.4:54605162-54605181 MS.gene066897:intron 30.0%
!! TAAAATTCGAACATTGGTTC+CGG + chr8.4:54604560-54604579 None:intergenic 30.0%
!! TACACTTTTTGACGTTTTTG+GGG - chr8.4:54605163-54605182 MS.gene066897:intron 30.0%
!! TTGTTCATTATAGTGGACAT+GGG - chr8.4:54604089-54604108 MS.gene066897:CDS 30.0%
!! TTTGTTCATTATAGTGGACA+TGG - chr8.4:54604088-54604107 MS.gene066897:CDS 30.0%
AAATGCTTGATCGAACGTTA+CGG - chr8.4:54603941-54603960 MS.gene066897:CDS 35.0%
ACAAGAAAGGATCATCAACA+TGG + chr8.4:54605646-54605665 None:intergenic 35.0%
AGTAAGCATGAAGTATATGC+TGG - chr8.4:54605374-54605393 MS.gene066897:CDS 35.0%
AGTTAAGATTGTCTCCATAG+TGG - chr8.4:54604511-54604530 MS.gene066897:CDS 35.0%
ATAAGCATTAGCTGCATTTC+CGG + chr8.4:54605483-54605502 None:intergenic 35.0%
ATATAGATGTTGGTCAACTG+AGG - chr8.4:54605138-54605157 MS.gene066897:intron 35.0%
ATATCAATGAGGGTTGAAAG+TGG + chr8.4:54605092-54605111 None:intergenic 35.0%
CAAAACAGTGATGTCATCTT+CGG + chr8.4:54603972-54603991 None:intergenic 35.0%
GATTTCAAGGAATTTGTGGA+TGG - chr8.4:54604783-54604802 MS.gene066897:intron 35.0%
GTGAACAGATGATGATTTCA+AGG - chr8.4:54604770-54604789 MS.gene066897:intron 35.0%
GTGATGAGATTCATATCAGA+AGG + chr8.4:54604175-54604194 None:intergenic 35.0%
TCTGATATGAATCTCATCAC+TGG - chr8.4:54604175-54604194 MS.gene066897:CDS 35.0%
TGCAATACAGGCTATAATTG+AGG - chr8.4:54605517-54605536 MS.gene066897:CDS 35.0%
TTTCAAGGAATTTGTGGATG+GGG - chr8.4:54604785-54604804 MS.gene066897:intron 35.0%
! CCAAAAACGTCAAAAAGTGT+AGG + chr8.4:54605164-54605183 None:intergenic 35.0%
! CTGCTGTTTGTTCATTATAG+TGG - chr8.4:54604082-54604101 MS.gene066897:CDS 35.0%
! GCTTTTGCTTAAGAAACTCT+TGG + chr8.4:54605301-54605320 None:intergenic 35.0%
! TGATGGTGCAATTACATACT+CGG - chr8.4:54605544-54605563 MS.gene066897:CDS 35.0%
! TTGATGATAAGGAATCTCCA+GGG - chr8.4:54604429-54604448 MS.gene066897:CDS 35.0%
! TTTGATGATAAGGAATCTCC+AGG - chr8.4:54604428-54604447 MS.gene066897:CDS 35.0%
! TTTTGTGATTTTGGATCCTG+TGG - chr8.4:54604305-54604324 MS.gene066897:CDS 35.0%
!! CCTACACTTTTTGACGTTTT+TGG - chr8.4:54605161-54605180 MS.gene066897:intron 35.0%
AAAGCCTGATAATCCAAAGC+CGG + chr8.4:54604928-54604947 None:intergenic 40.0%
ACCTATTCTTCACTCCATGT+GGG + chr8.4:54605064-54605083 None:intergenic 40.0%
AGAGAGAAGCTACAGAAAGA+TGG - chr8.4:54605584-54605603 MS.gene066897:CDS 40.0%
AGCTTTCAGCAATGCAATAC+AGG - chr8.4:54605505-54605524 MS.gene066897:CDS 40.0%
ATACTCGGAGCTTATTCTCA+AGG - chr8.4:54605559-54605578 MS.gene066897:CDS 40.0%
CGTCTTATGTTCTTTCCTGT+CGG + chr8.4:54604022-54604041 None:intergenic 40.0%
CTTTCTGCATAGGAAAGTTG+AGG - chr8.4:54604944-54604963 MS.gene066897:intron 40.0%
GAACATAAGACGTGTTCTGT+CGG - chr8.4:54604030-54604049 MS.gene066897:CDS 40.0%
GATTATCAGGCTTTCTGCAT+AGG - chr8.4:54604934-54604953 MS.gene066897:intron 40.0%
GCTATAATTGAGGAGACTGA+TGG - chr8.4:54605527-54605546 MS.gene066897:CDS 40.0%
GGAAATGCAGCTAATGCTTA+TGG - chr8.4:54605482-54605501 MS.gene066897:CDS 40.0%
GTGGCATGAATCAGATACAA+TGG + chr8.4:54604832-54604851 None:intergenic 40.0%
TGGCTTGATTGAAGAAGCTA+AGG - chr8.4:54604857-54604876 MS.gene066897:intron 40.0%
!! GTAACTCTGCTTTTGTTCCT+GGG + chr8.4:54603889-54603908 None:intergenic 40.0%
!!! CATCACTGTTTTGATCGACA+CGG - chr8.4:54603979-54603998 MS.gene066897:CDS 40.0%
AAGGGAGAAGAGGAACATTC+TGG - chr8.4:54604900-54604919 MS.gene066897:intron 45.0%
ACAAGGTGGGATATTGGGAA+TGG - chr8.4:54605262-54605281 MS.gene066897:intron 45.0%
ACCAGTATCATCATCCTCTC+CGG + chr8.4:54604134-54604153 None:intergenic 45.0%
ATCTTGAACAAGCTCCAGCA+TGG - chr8.4:54605224-54605243 MS.gene066897:intron 45.0%
ATTGCGTCGTCATACACACA+GGG - chr8.4:54605004-54605023 MS.gene066897:intron 45.0%
CAACTTTCAGCTGTAACCAC+AGG + chr8.4:54604324-54604343 None:intergenic 45.0%
GAAGAAGCTAAGGAGCAGAT+AGG - chr8.4:54604867-54604886 MS.gene066897:intron 45.0%
GAAGAGGAACATTCTGGATC+CGG - chr8.4:54604906-54604925 MS.gene066897:intron 45.0%
GACCTATTCTTCACTCCATG+TGG + chr8.4:54605065-54605084 None:intergenic 45.0%
GATTCCGGTCAATTCCACTA+TGG + chr8.4:54604528-54604547 None:intergenic 45.0%
GGAACAAAAGCAGAGTTACG+AGG - chr8.4:54603890-54603909 MS.gene066897:CDS 45.0%
GTATCTGATTCATGCCACAG+TGG - chr8.4:54604834-54604853 MS.gene066897:intron 45.0%
TATGACGACGCAATCCTGAA+GGG + chr8.4:54604998-54605017 None:intergenic 45.0%
TCCCACATGGAGTGAAGAAT+AGG - chr8.4:54605060-54605079 MS.gene066897:intron 45.0%
TGAGGATGCTATTGAGTCCA+GGG - chr8.4:54604962-54604981 MS.gene066897:intron 45.0%
TGATAAGGAATCTCCAGGGA+CGG - chr8.4:54604433-54604452 MS.gene066897:CDS 45.0%
TGATCACTGCAATAGAGTCC+TGG + chr8.4:54605623-54605642 None:intergenic 45.0%
TTGAGGATGCTATTGAGTCC+AGG - chr8.4:54604961-54604980 MS.gene066897:intron 45.0%
TTGATCGGAATCAACTACCC+AGG - chr8.4:54603869-54603888 MS.gene066897:CDS 45.0%
TTTGTAGTCTCGTGCATGTC+TGG - chr8.4:54604676-54604695 MS.gene066897:CDS 45.0%
! CAGATAGGAGAGAGCACAAA+GGG - chr8.4:54604882-54604901 MS.gene066897:intron 45.0%
! GATGGATTCACTCAAAAGCC+AGG - chr8.4:54605602-54605621 MS.gene066897:CDS 45.0%
! GTCTCCATAGTGGAATTGAC+CGG - chr8.4:54604521-54604540 MS.gene066897:CDS 45.0%
!! AATTCGAACATTGGTTCCGG+AGG + chr8.4:54604557-54604576 None:intergenic 45.0%
!! CGTAACTCTGCTTTTGTTCC+TGG + chr8.4:54603890-54603909 None:intergenic 45.0%
AAGGAACAGAAGGGAACGTG+TGG - chr8.4:54604618-54604637 MS.gene066897:CDS 50.0%
ACCGGAGAGGATGATGATAC+TGG - chr8.4:54604130-54604149 MS.gene066897:CDS 50.0%
ACTCGTCTTCCTGCTGAAAC+CGG - chr8.4:54604112-54604131 MS.gene066897:CDS 50.0%
AGGGATATCGAACTCCCACA+TGG - chr8.4:54605047-54605066 MS.gene066897:intron 50.0%
AGGGGATTTCATGTCCCTTC+AGG - chr8.4:54604981-54605000 MS.gene066897:intron 50.0%
AGGTGGACAAGGTGGGATAT+TGG - chr8.4:54605256-54605275 MS.gene066897:intron 50.0%
AGGTGGGATATTGGGAATGG+TGG - chr8.4:54605265-54605284 MS.gene066897:intron 50.0%
ATGGGGTTCCTAGAGGATGT+AGG - chr8.4:54604802-54604821 MS.gene066897:intron 50.0%
ATGGTCAGCCTACATCCTCT+AGG + chr8.4:54604813-54604832 None:intergenic 50.0%
CTTCAATCAAGCCACCACTG+TGG + chr8.4:54604851-54604870 None:intergenic 50.0%
CTTGTAGAGAATTCCGTCCC+TGG + chr8.4:54604449-54604468 None:intergenic 50.0%
GAACATTCTGGATCCGGCTT+TGG - chr8.4:54604912-54604931 MS.gene066897:intron 50.0%
GACAAGCATCTGCTGAAGTC+TGG + chr8.4:54605457-54605476 None:intergenic 50.0%
GAGGATGCTATTGAGTCCAG+GGG - chr8.4:54604963-54604982 MS.gene066897:intron 50.0%
GATTGCGTCGTCATACACAC+AGG - chr8.4:54605003-54605022 MS.gene066897:intron 50.0%
GGTGGACAAGGTGGGATATT+GGG - chr8.4:54605257-54605276 MS.gene066897:intron 50.0%
GGTGGGATATTGGGAATGGT+GGG - chr8.4:54605266-54605285 MS.gene066897:intron 50.0%
GTATGACGACGCAATCCTGA+AGG + chr8.4:54604999-54605018 None:intergenic 50.0%
TATGCTGGATCGTCAAAGCG+CGG - chr8.4:54605389-54605408 MS.gene066897:CDS 50.0%
TCTGATTCATGCCACAGTGG+TGG - chr8.4:54604837-54604856 MS.gene066897:intron 50.0%
TGAAGGGACATGAAATCCCC+TGG + chr8.4:54604982-54605001 None:intergenic 50.0%
TTCCGGAGGTTGTGAGATTC+CGG + chr8.4:54604543-54604562 None:intergenic 50.0%
TTGAACAAGCTCCAGCATGG+AGG - chr8.4:54605227-54605246 MS.gene066897:intron 50.0%
TTTGTGGATGGGGTTCCTAG+AGG - chr8.4:54604795-54604814 MS.gene066897:intron 50.0%
! AGAGAGCACAAAGGGAGAAG+AGG - chr8.4:54604890-54604909 MS.gene066897:intron 50.0%
! GCAGATAGGAGAGAGCACAA+AGG - chr8.4:54604881-54604900 MS.gene066897:intron 50.0%
!! GGATCCGGCTTTGGATTATC+AGG - chr8.4:54604921-54604940 MS.gene066897:intron 50.0%
AACAAGCTCCAGCATGGAGG+TGG - chr8.4:54605230-54605249 MS.gene066897:intron 55.0%
AAGACGTGTTCTGTCGGAGC+TGG - chr8.4:54604036-54604055 MS.gene066897:CDS 55.0%
ACTTCCCACTTCCGTCTCCA+TGG + chr8.4:54605357-54605376 None:intergenic 55.0%
AGCGGTGGGATTCTGATGAG+TGG - chr8.4:54605419-54605438 MS.gene066897:CDS 55.0%
CGACACGGATTCGTCGTACA+CGG - chr8.4:54603994-54604013 MS.gene066897:CDS 55.0%
CTCATCAGAATCCCACCGCT+TGG + chr8.4:54605419-54605438 None:intergenic 55.0%
CTGGTCAGATCTTCGGAGGA+CGG - chr8.4:54604055-54604074 MS.gene066897:CDS 55.0%
GACCGGAATCTCACAACCTC+CGG - chr8.4:54604538-54604557 MS.gene066897:CDS 55.0%
GAGGATGCGTAAACGACGTG+TGG - chr8.4:54603909-54603928 MS.gene066897:CDS 55.0%
GATGCGTAAACGACGTGTGG+AGG - chr8.4:54603912-54603931 MS.gene066897:CDS 55.0%
GCATTAGCTGCATTTCCGGC+AGG + chr8.4:54605479-54605498 None:intergenic 55.0%
GGGATATGCAAAGCCTGCCA+TGG - chr8.4:54605337-54605356 MS.gene066897:CDS 55.0%
GTCGGAGCTGGTCAGATCTT+CGG - chr8.4:54604048-54604067 MS.gene066897:CDS 55.0%
GTGGTGAAGGTGGACAAGGT+GGG - chr8.4:54605249-54605268 MS.gene066897:intron 55.0%
TCAAAGCGCGGTCTTCCAAG+CGG - chr8.4:54605401-54605420 MS.gene066897:CDS 55.0%
TCAGCAGATGCTTGTCCTGC+CGG - chr8.4:54605461-54605480 MS.gene066897:CDS 55.0%
TCATCCTCTCCGGTTTCAGC+AGG + chr8.4:54604124-54604143 None:intergenic 55.0%
TCTTCCTGCTGAAACCGGAG+AGG - chr8.4:54604117-54604136 MS.gene066897:CDS 55.0%
TGCAAAGCCTGCCATGGAGA+CGG - chr8.4:54605343-54605362 MS.gene066897:CDS 55.0%
CACCTTCACCACCTCCATGC+TGG + chr8.4:54605241-54605260 None:intergenic 60.0%
CAGCATGGAGGTGGTGAAGG+TGG - chr8.4:54605239-54605258 MS.gene066897:intron 60.0%
CCTGCCATGGAGACGGAAGT+GGG - chr8.4:54605350-54605369 MS.gene066897:CDS 60.0%
CTCCAGCATGGAGGTGGTGA+AGG - chr8.4:54605236-54605255 MS.gene066897:intron 60.0%
GGAGCTGGTCAGATCTTCGG+AGG - chr8.4:54604051-54604070 MS.gene066897:CDS 60.0%
GGAGGTGGTGAAGGTGGACA+AGG - chr8.4:54605245-54605264 MS.gene066897:intron 60.0%
GGTGGTGAAGGTGGACAAGG+TGG - chr8.4:54605248-54605267 MS.gene066897:intron 60.0%
AAGCGCGGTCTTCCAAGCGG+TGG - chr8.4:54605404-54605423 MS.gene066897:CDS 65.0%
AGCGCGGTCTTCCAAGCGGT+GGG - chr8.4:54605405-54605424 MS.gene066897:CDS 65.0%
CCCACTTCCGTCTCCATGGC+AGG + chr8.4:54605353-54605372 None:intergenic 65.0%
GCCTGCCATGGAGACGGAAG+TGG - chr8.4:54605349-54605368 MS.gene066897:CDS 65.0%
TCGTCGTACACGGAGCCGAC+AGG - chr8.4:54604004-54604023 MS.gene066897:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 54603851 54605670 54603851 ID=MS.gene066897
chr8.4 mRNA 54603851 54605670 54603851 ID=MS.gene066897.t1;Parent=MS.gene066897
chr8.4 exon 54605325 54605670 54605325 ID=MS.gene066897.t1.exon1;Parent=MS.gene066897.t1
chr8.4 CDS 54605325 54605670 54605325 ID=cds.MS.gene066897.t1;Parent=MS.gene066897.t1
chr8.4 exon 54603851 54604743 54603851 ID=MS.gene066897.t1.exon2;Parent=MS.gene066897.t1
chr8.4 CDS 54603851 54604743 54603851 ID=cds.MS.gene066897.t1;Parent=MS.gene066897.t1
Gene Sequence

>MS.gene066897

ATGACGAAAAAAGCTGTATTGATCGGAATCAACTACCCAGGAACAAAAGCAGAGTTACGAGGATGCGTAAACGACGTGTGGAGGATGCACAAATGCTTGATCGAACGTTACGGTTTTTCCGAAGATGACATCACTGTTTTGATCGACACGGATTCGTCGTACACGGAGCCGACAGGAAAGAACATAAGACGTGTTCTGTCGGAGCTGGTCAGATCTTCGGAGGACGGTGATCTGCTGTTTGTTCATTATAGTGGACATGGGACTCGTCTTCCTGCTGAAACCGGAGAGGATGATGATACTGGTTTTGATGAATGTATTGTTCCTTCTGATATGAATCTCATCACTGGTTCGTACCAAGAAAAAGAAAAAACTACTCTCCTTTTTATTTACCTTTTTCTCTCTGTTTTTATTTTTGTTTTGATTAAGTGAATTGTATGTTAATTTAAATGTTTAATTTTGTGATTTTGGATCCTGTGGTTACAGCTGAAAGTTGTTTTAAAATTATTATTACTTTTTGACAAAAAGTGTTTTAAGAATTGAGAAACGATTTCAACGTGTTTGATTTGATTTGATTTGATTTGATGATAAGGAATCTCCAGGGACGGAATTCTCTACAAGAAACTTTTTAAAGTTTTTACTTTATTTGAAAATTCATAGATCAGTTAAGATTGTCTCCATAGTGGAATTGACCGGAATCTCACAACCTCCGGAACCAATGTTCGAATTTTAATTGAGAAATGTGCATACATTTAGTATACATGAATATAAAGGAACAGAAGGGAACGTGTGGAAAAAATGTATTCATAGCTTGTGATTCATGATTTCTTTGTAGTCTCGTGCATGTCTGGAATCTTTATATAGGGTAATTCTGATGTTATTAGTGAGTAGTAATGGTAGTAGTATTGCTGTCTTTTTGTGTGTGAACAGATGATGATTTCAAGGAATTTGTGGATGGGGTTCCTAGAGGATGTAGGCTGACCATTGTATCTGATTCATGCCACAGTGGTGGCTTGATTGAAGAAGCTAAGGAGCAGATAGGAGAGAGCACAAAGGGAGAAGAGGAACATTCTGGATCCGGCTTTGGATTATCAGGCTTTCTGCATAGGAAAGTTGAGGATGCTATTGAGTCCAGGGGATTTCATGTCCCTTCAGGATTGCGTCGTCATACACACAGGGATGAAGAAACAAATGAAGATAGGGATATCGAACTCCCACATGGAGTGAAGAATAGGTCTCTGCCACTTTCAACCCTCATTGATATACTTAAGCAGAAAACTGGGAAAGAAAATATAGATGTTGGTCAACTGAGGCCTACACTTTTTGACGTTTTTGGGGAAGATGCTAGTCCTAAAGTGAAGAAGTTTATGAAAGTCATCTTGAACAAGCTCCAGCATGGAGGTGGTGAAGGTGGACAAGGTGGGATATTGGGAATGGTGGGTAGTCTTGCCCAAGAGTTTCTTAAGCAAAAGCTGAATGATAATGATGAGGGATATGCAAAGCCTGCCATGGAGACGGAAGTGGGAAGTAAGCATGAAGTATATGCTGGATCGTCAAAGCGCGGTCTTCCAAGCGGTGGGATTCTGATGAGTGGCTGTCAGACAGACCAGACTTCAGCAGATGCTTGTCCTGCCGGAAATGCAGCTAATGCTTATGGAGCTTTCAGCAATGCAATACAGGCTATAATTGAGGAGACTGATGGTGCAATTACATACTCGGAGCTTATTCTCAAGGCTAGAGAGAAGCTACAGAAAGATGGATTCACTCAAAAGCCAGGACTCTATTGCAGTGATCACCATGTTGATGATCCTTTCTTGTGCTGA

Protein sequence

>MS.gene066897.t1

MTKKAVLIGINYPGTKAELRGCVNDVWRMHKCLIERYGFSEDDITVLIDTDSSYTEPTGKNIRRVLSELVRSSEDGDLLFVHYSGHGTRLPAETGEDDDTGFDECIVPSDMNLITDDDFKEFVDGVPRGCRLTIVSDSCHSGGLIEEAKEQIGESTKGEEEHSGSGFGLSGFLHRKVEDAIESRGFHVPSGLRRHTHRDEETNEDRDIELPHGVKNRSLPLSTLIDILKQKTGKENIDVGQLRPTLFDVFGEDASPKVKKFMKVILNKLQHGGGEGGQGGILGMVGSLAQEFLKQKLNDNDEGYAKPAMETEVGSKHEVYAGSSKRGLPSGGILMSGCQTDQTSADACPAGNAANAYGAFSNAIQAIIEETDGAITYSELILKAREKLQKDGFTQKPGLYCSDHHVDDPFLC