Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068245.t1 | AES86641.2 | 91.7 | 516 | 31 | 1 | 1 | 516 | 8 | 511 | 6.50E-241 | 844 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068245.t1 | Q93YU8 | 26.5 | 400 | 274 | 7 | 129 | 513 | 356 | 750 | 2.7e-25 | 119.0 |
| MS.gene068245.t1 | Q93YU8 | 44.6 | 74 | 41 | 0 | 1 | 74 | 8 | 81 | 6.6e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068245.t1 | G7JI75 | 91.7 | 516 | 31 | 1 | 1 | 516 | 8 | 511 | 4.7e-241 | 844.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene068245 | 0.815183 | 1.05E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene068245 | 0.830034 | 3.69E-55 | -1.69E-46 |
| MS.gene049501 | MS.gene068245 | 0.820694 | 5.99E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene068245 | 0.830415 | 2.98E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene068245 | 0.809407 | 1.92E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene068245 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene068245 | 0.821183 | 4.62E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene068245 | 0.815087 | 1.11E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene068245 | 0.801757 | 7.74E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene068245 | 0.811768 | 5.93E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene068245 | 0.840932 | 6.45E-58 | -1.69E-46 |
| MS.gene051247 | MS.gene068245 | 0.846491 | 2.10E-59 | -1.69E-46 |
| MS.gene051265 | MS.gene068245 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene068245 | 0.818324 | 2.08E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene068245 | 0.815572 | 8.63E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene068245 | 0.802886 | 4.53E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene068245 | 0.820669 | 6.07E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene068245 | 0.827855 | 1.24E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene068245 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene068245 | 0.847819 | 9.09E-60 | -1.69E-46 |
| MS.gene05288 | MS.gene068245 | 0.813462 | 2.53E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene068245 | 0.800605 | 1.33E-48 | -1.69E-46 |
| MS.gene053008 | MS.gene068245 | 0.826195 | 3.10E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene068245 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene068245 | 0.838065 | 3.59E-57 | -1.69E-46 |
| MS.gene055357 | MS.gene068245 | 0.802706 | 4.94E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene068245 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene068245 | 0.820026 | 8.53E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene068245 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene068245 | 0.848773 | 4.95E-60 | -1.69E-46 |
| MS.gene05604 | MS.gene068245 | 0.808219 | 3.45E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene068245 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene068245 | 0.829307 | 5.54E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene068245 | 0.817692 | 2.89E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene068245 | 0.804844 | 1.78E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene068245 | 0.816063 | 6.71E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene068245 | 0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene068245 | 0.808671 | 2.76E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene068245 | 0.817265 | 3.61E-52 | -1.69E-46 |
| MS.gene059151 | MS.gene068245 | 0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene068245 | 0.811933 | 5.46E-51 | -1.69E-46 |
| MS.gene059937 | MS.gene068245 | 0.812616 | 3.88E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene068245 | 0.816371 | 5.72E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene068245 | 0.802568 | 5.28E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene068245 | 0.829866 | 4.05E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene068245 | 0.832117 | 1.14E-55 | -1.69E-46 |
| MS.gene060907 | MS.gene068245 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene068245 | 0.813883 | 2.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068245.t1 | MTR_4g012430 | 92.248 | 516 | 28 | 1 | 1 | 516 | 8 | 511 | 0.0 | 885 |
| MS.gene068245.t1 | MTR_4g012440 | 95.397 | 239 | 11 | 0 | 523 | 761 | 21 | 259 | 1.09e-168 | 490 |
| MS.gene068245.t1 | MTR_2g102050 | 57.178 | 404 | 162 | 5 | 122 | 517 | 314 | 714 | 7.35e-143 | 442 |
| MS.gene068245.t1 | MTR_2g102050 | 46.154 | 104 | 41 | 2 | 1 | 89 | 8 | 111 | 6.24e-17 | 86.3 |
| MS.gene068245.t1 | MTR_3g109450 | 54.187 | 406 | 174 | 4 | 119 | 517 | 266 | 666 | 3.70e-136 | 423 |
| MS.gene068245.t1 | MTR_4g012450 | 91.200 | 125 | 11 | 0 | 762 | 886 | 43 | 167 | 4.89e-77 | 249 |
| MS.gene068245.t1 | MTR_8g006850 | 31.236 | 445 | 269 | 13 | 91 | 508 | 238 | 672 | 1.21e-41 | 164 |
| MS.gene068245.t1 | MTR_7g081705 | 32.573 | 307 | 196 | 4 | 209 | 507 | 488 | 791 | 6.74e-39 | 156 |
| MS.gene068245.t1 | MTR_5g022530 | 28.967 | 397 | 262 | 7 | 129 | 513 | 205 | 593 | 4.12e-38 | 152 |
| MS.gene068245.t1 | MTR_1g112850 | 25.397 | 378 | 239 | 9 | 129 | 475 | 275 | 640 | 1.26e-29 | 126 |
| MS.gene068245.t1 | MTR_2g048360 | 28.955 | 335 | 219 | 7 | 133 | 456 | 213 | 539 | 3.28e-29 | 124 |
| MS.gene068245.t1 | MTR_3g078830 | 26.816 | 358 | 215 | 6 | 126 | 437 | 325 | 681 | 1.67e-27 | 120 |
| MS.gene068245.t1 | MTR_5g087740 | 26.821 | 302 | 181 | 3 | 129 | 392 | 312 | 611 | 2.20e-26 | 116 |
| MS.gene068245.t1 | MTR_8g091250 | 24.752 | 404 | 249 | 10 | 91 | 443 | 224 | 623 | 5.56e-26 | 114 |
| MS.gene068245.t1 | MTR_4g127620 | 27.410 | 332 | 214 | 7 | 129 | 438 | 336 | 662 | 8.73e-26 | 114 |
| MS.gene068245.t1 | MTR_3g096950 | 24.709 | 429 | 274 | 12 | 125 | 518 | 337 | 751 | 5.68e-24 | 108 |
| MS.gene068245.t1 | MTR_5g098980 | 24.444 | 360 | 243 | 8 | 127 | 469 | 353 | 700 | 5.47e-23 | 105 |
| MS.gene068245.t1 | MTR_3g088190 | 21.411 | 397 | 262 | 9 | 129 | 486 | 455 | 840 | 6.20e-22 | 102 |
| MS.gene068245.t1 | MTR_2g036920 | 28.024 | 339 | 207 | 9 | 130 | 435 | 476 | 810 | 1.93e-21 | 100 |
| MS.gene068245.t1 | MTR_2g036920 | 28.024 | 339 | 207 | 9 | 130 | 435 | 505 | 839 | 2.05e-21 | 100 |
| MS.gene068245.t1 | MTR_2g102080 | 36.667 | 120 | 75 | 1 | 763 | 881 | 11 | 130 | 5.37e-20 | 89.4 |
| MS.gene068245.t1 | MTR_3g115120 | 24.571 | 350 | 242 | 7 | 132 | 468 | 279 | 619 | 8.21e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068245.t1 | AT1G52320 | 52.998 | 417 | 184 | 5 | 108 | 517 | 5 | 416 | 1.04e-134 | 411 |
| MS.gene068245.t1 | AT1G52320 | 52.998 | 417 | 184 | 5 | 108 | 517 | 5 | 416 | 1.04e-134 | 411 |
| MS.gene068245.t1 | AT1G52320 | 52.998 | 417 | 184 | 5 | 108 | 517 | 308 | 719 | 3.18e-132 | 415 |
| MS.gene068245.t1 | AT1G52320 | 52.998 | 417 | 184 | 5 | 108 | 517 | 331 | 742 | 6.75e-132 | 414 |
| MS.gene068245.t1 | AT1G52320 | 52.998 | 417 | 184 | 5 | 108 | 517 | 331 | 742 | 6.75e-132 | 414 |
| MS.gene068245.t1 | AT5G25590 | 50.251 | 398 | 188 | 5 | 128 | 517 | 329 | 724 | 3.87e-115 | 370 |
| MS.gene068245.t1 | AT5G01470 | 69.027 | 226 | 67 | 2 | 522 | 746 | 15 | 238 | 3.06e-108 | 333 |
| MS.gene068245.t1 | AT5G01470 | 69.027 | 226 | 67 | 2 | 522 | 746 | 39 | 262 | 6.11e-108 | 333 |
| MS.gene068245.t1 | AT5G01470 | 69.469 | 226 | 62 | 3 | 522 | 746 | 15 | 234 | 9.00e-108 | 332 |
| MS.gene068245.t1 | AT5G01470 | 69.469 | 226 | 62 | 3 | 522 | 746 | 39 | 258 | 1.92e-107 | 332 |
| MS.gene068245.t1 | AT5G01470 | 69.469 | 226 | 60 | 3 | 522 | 746 | 39 | 256 | 3.01e-107 | 332 |
| MS.gene068245.t1 | AT5G01470 | 67.284 | 162 | 47 | 2 | 522 | 682 | 15 | 171 | 5.42e-70 | 229 |
| MS.gene068245.t1 | AT5G01470 | 67.284 | 162 | 47 | 2 | 522 | 682 | 39 | 195 | 1.48e-69 | 229 |
| MS.gene068245.t1 | AT3G51290 | 30.673 | 401 | 244 | 12 | 129 | 513 | 201 | 583 | 2.04e-38 | 154 |
| MS.gene068245.t1 | AT3G51290 | 30.673 | 401 | 244 | 12 | 129 | 513 | 201 | 583 | 3.47e-38 | 152 |
| MS.gene068245.t1 | AT1G02110 | 31.124 | 347 | 225 | 6 | 129 | 466 | 271 | 612 | 1.76e-36 | 147 |
| MS.gene068245.t1 | AT3G51290 | 29.925 | 401 | 241 | 13 | 129 | 513 | 201 | 577 | 4.68e-33 | 136 |
| MS.gene068245.t1 | AT3G60320 | 29.296 | 355 | 223 | 5 | 129 | 466 | 356 | 699 | 9.30e-33 | 136 |
| MS.gene068245.t1 | AT1G77500 | 25.356 | 351 | 231 | 6 | 129 | 454 | 450 | 794 | 4.93e-28 | 122 |
| MS.gene068245.t1 | AT2G27090 | 26.216 | 370 | 227 | 7 | 129 | 453 | 308 | 676 | 1.15e-27 | 120 |
| MS.gene068245.t1 | AT2G27090 | 26.216 | 370 | 227 | 7 | 129 | 453 | 308 | 676 | 1.15e-27 | 120 |
| MS.gene068245.t1 | AT1G21740 | 24.716 | 352 | 234 | 7 | 129 | 455 | 498 | 843 | 1.96e-25 | 114 |
| MS.gene068245.t1 | AT4G35240 | 22.099 | 362 | 243 | 7 | 132 | 465 | 423 | 773 | 1.08e-22 | 105 |
| MS.gene068245.t1 | AT4G35240 | 22.099 | 362 | 243 | 7 | 132 | 465 | 423 | 773 | 1.08e-22 | 105 |
| MS.gene068245.t1 | AT4G35240 | 22.099 | 362 | 243 | 7 | 132 | 465 | 423 | 773 | 1.22e-22 | 104 |
| MS.gene068245.t1 | AT4G35240 | 22.099 | 362 | 243 | 7 | 132 | 465 | 423 | 773 | 1.22e-22 | 104 |
| MS.gene068245.t1 | AT4G39790 | 22.539 | 386 | 243 | 9 | 108 | 441 | 231 | 612 | 1.57e-21 | 100 |
| MS.gene068245.t1 | AT2G34670 | 28.163 | 245 | 165 | 4 | 212 | 450 | 336 | 575 | 1.72e-21 | 100 |
| MS.gene068245.t1 | AT2G17110 | 23.242 | 327 | 221 | 7 | 132 | 434 | 313 | 633 | 2.77e-20 | 97.1 |
| MS.gene068245.t1 | AT2G19090 | 27.485 | 342 | 211 | 9 | 130 | 438 | 387 | 724 | 1.39e-19 | 94.7 |
| MS.gene068245.t1 | AT1G52330 | 38.211 | 123 | 75 | 1 | 760 | 881 | 66 | 188 | 5.07e-19 | 87.0 |
| MS.gene068245.t1 | AT1G52330 | 38.211 | 123 | 75 | 1 | 760 | 881 | 66 | 188 | 6.60e-19 | 87.0 |
| MS.gene068245.t1 | AT2G34670 | 25.301 | 332 | 224 | 8 | 96 | 415 | 221 | 540 | 7.34e-17 | 85.5 |
| MS.gene068245.t1 | AT5G54480 | 27.509 | 269 | 170 | 9 | 129 | 391 | 325 | 574 | 8.18e-17 | 85.9 |
| MS.gene068245.t1 | AT1G20530 | 25.879 | 313 | 195 | 9 | 117 | 410 | 215 | 509 | 4.23e-16 | 83.2 |
| MS.gene068245.t1 | AT4G13270 | 37.255 | 102 | 63 | 1 | 781 | 881 | 88 | 189 | 2.47e-14 | 73.6 |
| MS.gene068245.t1 | AT4G30130 | 28.099 | 242 | 157 | 5 | 213 | 438 | 401 | 641 | 3.00e-14 | 77.4 |
| MS.gene068245.t1 | AT4G30130 | 28.099 | 242 | 157 | 5 | 213 | 438 | 401 | 641 | 3.00e-14 | 77.4 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATACCTTGAAAATATT+AGG | 0.189816 | 4.4:-87497499 | None:intergenic |
| TCTTTCACTTCATCAGTATT+TGG | 0.203600 | 4.4:-87488380 | None:intergenic |
| TCCCAATCAGGGTCAGAATT+TGG | 0.252944 | 4.4:-87494100 | None:intergenic |
| TGTTTGGGGAGCTTGAGTTT+GGG | 0.259099 | 4.4:+87497362 | MS.gene068245:CDS |
| TCGTTGTATCACTCTCAATA+AGG | 0.262337 | 4.4:-87489672 | None:intergenic |
| AGTGAAAGAGAGTGTGAATA+TGG | 0.290256 | 4.4:+87488020 | MS.gene068245:CDS |
| GTGTTTGGGGAGCTTGAGTT+TGG | 0.299830 | 4.4:+87497361 | MS.gene068245:CDS |
| TGATAGTTAACTGCTTCTTA+TGG | 0.300998 | 4.4:-87489471 | None:intergenic |
| TGGGGTTCAGAACATGTGTT+TGG | 0.308086 | 4.4:+87497346 | MS.gene068245:CDS |
| GGGGTTCAGAACATGTGTTT+GGG | 0.324110 | 4.4:+87497347 | MS.gene068245:CDS |
| CAGTGTTTCTGTAATTCTTC+AGG | 0.328526 | 4.4:+87488104 | MS.gene068245:CDS |
| GTTAAGGGAGAAGAGAGTTT+TGG | 0.331409 | 4.4:+87489993 | MS.gene068245:CDS |
| GGGTTGGCACGTGAAGGGTT+GGG | 0.340777 | 4.4:+87497327 | MS.gene068245:CDS |
| ACATAGGTTTCATGAGTCTC+TGG | 0.341455 | 4.4:-87491162 | None:intergenic |
| GTTGAAGTTGTGGGAAATCT+TGG | 0.341989 | 4.4:+87497457 | MS.gene068245:CDS |
| AAAAGCAGCACTGAGTCATT+TGG | 0.345022 | 4.4:+87488762 | MS.gene068245:CDS |
| CGTTGTATCACTCTCAATAA+GGG | 0.347533 | 4.4:-87489671 | None:intergenic |
| TTCCAAATTCTGACCCTGAT+TGG | 0.348490 | 4.4:+87494098 | MS.gene068245:CDS |
| AAAGTTACAAGCACAGTGAT+AGG | 0.357656 | 4.4:+87495382 | MS.gene068245:CDS |
| CGCGGCCGCGAATTTGTTAC+GGG | 0.361760 | 4.4:-87487725 | None:intergenic |
| GGTTGGCACGTGAAGGGTTG+GGG | 0.363964 | 4.4:+87497328 | MS.gene068245:CDS |
| CTATGATGATCAAGAAATAA+TGG | 0.365015 | 4.4:+87493457 | MS.gene068245:CDS |
| ACGGTCTTTACAACTTGTTA+TGG | 0.365214 | 4.4:-87487674 | None:intergenic |
| TACAAATCCTTCTTCATGCT+TGG | 0.366749 | 4.4:+87489716 | MS.gene068245:CDS |
| CGAAGAGCAGCAGGTAAATC+AGG | 0.367517 | 4.4:-87487874 | None:intergenic |
| ATAATACCTTGAAAATATTA+GGG | 0.371032 | 4.4:-87497498 | None:intergenic |
| AGGGCTACCGTTTCTCCAAC+TGG | 0.373422 | 4.4:+87495402 | MS.gene068245:CDS |
| ATGATCCTCCTGAGGTGTTA+AGG | 0.373907 | 4.4:+87489977 | MS.gene068245:CDS |
| AAACTTTACATTACCATTCC+AGG | 0.381206 | 4.4:-87491204 | None:intergenic |
| GCTATTCTAGCTTGTTCATC+AGG | 0.385769 | 4.4:-87489760 | None:intergenic |
| GCAATTATCAGGTCCCAATC+AGG | 0.386063 | 4.4:-87494112 | None:intergenic |
| TCCAAATTCTGACCCTGATT+GGG | 0.389989 | 4.4:+87494099 | MS.gene068245:CDS |
| GGTCTACAAGTGAAACATAT+TGG | 0.396826 | 4.4:+87495740 | MS.gene068245:CDS |
| TCAACAAGCTGCACAAGTTT+CGG | 0.397233 | 4.4:-87488865 | None:intergenic |
| GCGCGGCCGCGAATTTGTTA+CGG | 0.397453 | 4.4:-87487726 | None:intergenic |
| CTGATTTACCTGCTGCTCTT+CGG | 0.398596 | 4.4:+87487875 | MS.gene068245:CDS |
| TATCAGTGGCACGGGTGCTT+TGG | 0.399308 | 4.4:+87493388 | MS.gene068245:intron |
| GAAACTATATAGTGAAGTTA+AGG | 0.401251 | 4.4:+87488469 | MS.gene068245:CDS |
| AGATGTCACTCGCAATTATC+AGG | 0.404815 | 4.4:-87494123 | None:intergenic |
| ATGAGCTGGAGACGTAGAAT+TGG | 0.406397 | 4.4:+87495674 | MS.gene068245:CDS |
| TATTAGACAAGTTGCTAGCT+TGG | 0.414094 | 4.4:+87488441 | MS.gene068245:CDS |
| TCTGCAAATGCAAAAGTTCC+TGG | 0.414507 | 4.4:-87492872 | None:intergenic |
| TGATCCTCCTGAGGTGTTAA+GGG | 0.422439 | 4.4:+87489978 | MS.gene068245:CDS |
| GGGGTTGGCACGTGAAGGGT+TGG | 0.423435 | 4.4:+87497326 | MS.gene068245:CDS |
| TCATCAAAGCCTTATATAGT+TGG | 0.423802 | 4.4:+87489632 | MS.gene068245:CDS |
| GGACGGCGTACCATTGAGTT+GGG | 0.432784 | 4.4:+87492926 | MS.gene068245:CDS |
| GTTGATGAAAGGAAAATTCT+CGG | 0.437679 | 4.4:-87492829 | None:intergenic |
| ATTAAACCCAGAAATTGAAA+TGG | 0.437917 | 4.4:+87497132 | MS.gene068245:intron |
| AAACTTGTGCAGCTTGTTGA+TGG | 0.440917 | 4.4:+87488868 | MS.gene068245:CDS |
| AGGAAGAGGAGGAGGAGGCA+AGG | 0.441056 | 4.4:-87487854 | None:intergenic |
| CAGGAGGTGTAGCGTTGCCT+TGG | 0.441681 | 4.4:+87495639 | MS.gene068245:intron |
| GATGAATTTGATCGAAATAG+AGG | 0.443881 | 4.4:+87489940 | MS.gene068245:CDS |
| CCGTCATTACTTCATGAAAC+AGG | 0.460877 | 4.4:+87487693 | MS.gene068245:CDS |
| AGCTTGGTCACGTGGAAACT+AGG | 0.465057 | 4.4:+87497305 | MS.gene068245:CDS |
| CAGCACTTAACGGTGGTAAC+GGG | 0.465549 | 4.4:-87497186 | None:intergenic |
| CTGATGCTTCCTTTCAACAT+AGG | 0.466349 | 4.4:-87491178 | None:intergenic |
| ATTAGACAAGTTGCTAGCTT+GGG | 0.467823 | 4.4:+87488442 | MS.gene068245:CDS |
| GGAAGAGGAGGAGGAGGCAA+GGG | 0.468498 | 4.4:-87487853 | None:intergenic |
| CATACTGCTGTTGAAGTTGT+GGG | 0.471858 | 4.4:+87497448 | MS.gene068245:CDS |
| AAAGCAGACGATTTGATCAA+TGG | 0.474828 | 4.4:+87489887 | MS.gene068245:CDS |
| ATCATTCCCAGTTGGAGAAA+CGG | 0.476000 | 4.4:-87495409 | None:intergenic |
| CATAGGTTTCATGAGTCTCT+GGG | 0.476297 | 4.4:-87491161 | None:intergenic |
| GCTTGGTCACGTGGAAACTA+GGG | 0.477209 | 4.4:+87497306 | MS.gene068245:CDS |
| GTTTGGGGAGCTTGAGTTTG+GGG | 0.477621 | 4.4:+87497363 | MS.gene068245:CDS |
| AACTGAATGCTAATTTGCTC+TGG | 0.484021 | 4.4:+87492849 | MS.gene068245:CDS |
| GGGACTTCCTTCTGCAGATG+TGG | 0.484731 | 4.4:+87497384 | MS.gene068245:CDS |
| TTCAATGGTTGTGAGAAAGC+TGG | 0.485161 | 4.4:+87495719 | MS.gene068245:CDS |
| CTTCTTATGGTGGGAATGCA+TGG | 0.485259 | 4.4:-87489458 | None:intergenic |
| GAAATCGTCTGTATCAGATT+CGG | 0.495356 | 4.4:-87495348 | None:intergenic |
| AGTATTTGGTGTTTCTCTGA+AGG | 0.495516 | 4.4:-87488366 | None:intergenic |
| CATGGTGGTGGAAGAGGTAG+AGG | 0.496987 | 4.4:+87487930 | MS.gene068245:CDS |
| CTCCAGCTCATCAGAAAAGC+TGG | 0.498474 | 4.4:-87495662 | None:intergenic |
| AAGCAGACGATTTGATCAAT+GGG | 0.500394 | 4.4:+87489888 | MS.gene068245:CDS |
| ATCAGACATGGTGGTGGAAG+AGG | 0.500986 | 4.4:+87487924 | MS.gene068245:CDS |
| CTCTTCTCCCTTAACACCTC+AGG | 0.502675 | 4.4:-87489985 | None:intergenic |
| ATAGCACGCCGAAGAGCAGC+AGG | 0.504740 | 4.4:-87487883 | None:intergenic |
| AATGCTAATTTGCTCTGGCC+AGG | 0.508446 | 4.4:+87492854 | MS.gene068245:CDS |
| ACTAGAGAAGAGGTTGGATG+AGG | 0.509562 | 4.4:+87490020 | MS.gene068245:CDS |
| CTTGAGTGACGCGGCGTAGG+AGG | 0.513151 | 4.4:-87487752 | None:intergenic |
| GAAAGGAAGCATCAGTTCCC+TGG | 0.514240 | 4.4:+87491186 | MS.gene068245:CDS |
| AACTTTACATTACCATTCCA+GGG | 0.514797 | 4.4:-87491203 | None:intergenic |
| AGTGATGAGAGGAAGGATCG+TGG | 0.516031 | 4.4:+87487994 | MS.gene068245:CDS |
| GTTCTTGAGTGACGCGGCGT+AGG | 0.517338 | 4.4:-87487755 | None:intergenic |
| GGTTGAACTAGAGAAGAGGT+TGG | 0.517571 | 4.4:+87490014 | MS.gene068245:CDS |
| AGGACGGCGTACCATTGAGT+TGG | 0.517895 | 4.4:+87492925 | MS.gene068245:CDS |
| GTTGAATGTTATGCAAGAGT+TGG | 0.519426 | 4.4:+87489570 | MS.gene068245:CDS |
| AATGACACATCAGCACTTAA+CGG | 0.520732 | 4.4:-87497196 | None:intergenic |
| AACTAGGGGTTGGCACGTGA+AGG | 0.522677 | 4.4:+87497321 | MS.gene068245:CDS |
| AAAATACCTCCCCAACTCAA+TGG | 0.527260 | 4.4:-87492936 | None:intergenic |
| GGTAAATCAGGAAGAGGAGG+AGG | 0.528734 | 4.4:-87487862 | None:intergenic |
| TCAGCACTTAACGGTGGTAA+CGG | 0.531723 | 4.4:-87497187 | None:intergenic |
| CAACACAGATCATGCATTGA+AGG | 0.531892 | 4.4:+87492905 | MS.gene068245:CDS |
| TCACCCTTGCGGAGTAATCA+AGG | 0.532811 | 4.4:-87488319 | None:intergenic |
| ATTAGCATTCAGTTGATGAA+AGG | 0.532857 | 4.4:-87492840 | None:intergenic |
| GATCATTCCAAGCATGAAGA+AGG | 0.533691 | 4.4:-87489723 | None:intergenic |
| TTCCGCCCGTAACAAATTCG+CGG | 0.534741 | 4.4:+87487720 | MS.gene068245:CDS |
| TTTGGGGAGCTTGAGTTTGG+GGG | 0.538897 | 4.4:+87497364 | MS.gene068245:CDS |
| GATGATGAAGAAGTTGTTGA+AGG | 0.540266 | 4.4:+87487961 | MS.gene068245:CDS |
| AAATCAGGAAGAGGAGGAGG+AGG | 0.541723 | 4.4:-87487859 | None:intergenic |
| CACGGCAGCGAAATGTGATA+AGG | 0.541959 | 4.4:-87489782 | None:intergenic |
| TCATACTGCTGTTGAAGTTG+TGG | 0.544382 | 4.4:+87497447 | MS.gene068245:CDS |
| CTTATCACATTTCGCTGCCG+TGG | 0.548549 | 4.4:+87489783 | MS.gene068245:CDS |
| GGGTGATGCGAGTTGTAACA+TGG | 0.550646 | 4.4:+87488336 | MS.gene068245:CDS |
| TAGTTAACTGCTTCTTATGG+TGG | 0.551259 | 4.4:-87489468 | None:intergenic |
| TGCATCCATATCAGTGGCAC+GGG | 0.551675 | 4.4:+87493380 | MS.gene068245:intron |
| AGTTAACTGCTTCTTATGGT+GGG | 0.553032 | 4.4:-87489467 | None:intergenic |
| CTCATGAAACCTATGTTGAA+AGG | 0.555200 | 4.4:+87491169 | MS.gene068245:CDS |
| AGCATGAAGAAGGATTTGTA+AGG | 0.557102 | 4.4:-87489713 | None:intergenic |
| AACTTGTGCAGCTTGTTGAT+GGG | 0.558129 | 4.4:+87488869 | MS.gene068245:CDS |
| GGCAAGGGAACATCATAAGA+AGG | 0.560202 | 4.4:-87487838 | None:intergenic |
| TGCGAGTTGTAACATGGGAC+AGG | 0.561904 | 4.4:+87488342 | MS.gene068245:CDS |
| GCAGCAGGTAAATCAGGAAG+AGG | 0.562249 | 4.4:-87487868 | None:intergenic |
| GCAGGATCTTGCTAAGGCTA+GGG | 0.562521 | 4.4:+87497417 | MS.gene068245:CDS |
| CGGTTTGAGTGATGAGAGGA+AGG | 0.563092 | 4.4:+87487987 | MS.gene068245:CDS |
| TGCAGGATCTTGCTAAGGCT+AGG | 0.563770 | 4.4:+87497416 | MS.gene068245:CDS |
| AAGTATCGTGGGCATAAGCT+TGG | 0.565318 | 4.4:+87497289 | MS.gene068245:CDS |
| ACCATGTCTGATTCAAACTC+CGG | 0.568987 | 4.4:-87487913 | None:intergenic |
| AAAATCTATGAGAGCAGCGC+CGG | 0.569125 | 4.4:-87487779 | None:intergenic |
| TTTGATGCAGGATCTTGCTA+AGG | 0.569783 | 4.4:+87497411 | MS.gene068245:CDS |
| TGGTGTTCACTTGTTTCCGT+AGG | 0.572182 | 4.4:-87489526 | None:intergenic |
| CTCATCAGAAAAGCTGGCCA+AGG | 0.574321 | 4.4:-87495656 | None:intergenic |
| ACTAGATTCTCAGTTTCCTA+CGG | 0.575162 | 4.4:+87489510 | MS.gene068245:CDS |
| AAGTTACAAGCACAGTGATA+GGG | 0.575432 | 4.4:+87495383 | MS.gene068245:CDS |
| CAACTAGATGAGGTTGATGT+TGG | 0.578124 | 4.4:+87497262 | MS.gene068245:CDS |
| AGGTTCACACATTGAAACAT+TGG | 0.583232 | 4.4:+87488732 | MS.gene068245:CDS |
| GAAAATATTAGGGAAGTGAA+AGG | 0.584040 | 4.4:-87497488 | None:intergenic |
| TCGGCGTGCTATTACTATGC+CGG | 0.585041 | 4.4:+87487894 | MS.gene068245:CDS |
| GAAGAAGTTGTTGAAGGATG+CGG | 0.585048 | 4.4:+87487967 | MS.gene068245:CDS |
| GGGTTCAGAACATGTGTTTG+GGG | 0.587098 | 4.4:+87497348 | MS.gene068245:CDS |
| ACTAGGGGTTGGCACGTGAA+GGG | 0.587913 | 4.4:+87497322 | MS.gene068245:CDS |
| TTGCATCCATATCAGTGGCA+CGG | 0.589440 | 4.4:+87493379 | MS.gene068245:intron |
| CAATTATCAGGTCCCAATCA+GGG | 0.589733 | 4.4:-87494111 | None:intergenic |
| CTGGAGACGTAGAATTGGAA+AGG | 0.594042 | 4.4:+87495679 | MS.gene068245:CDS |
| GATGCGGTTTGAGTGATGAG+AGG | 0.596011 | 4.4:+87487983 | MS.gene068245:CDS |
| GGCCGCGAATTTGTTACGGG+CGG | 0.597522 | 4.4:-87487722 | None:intergenic |
| GCAGGTAAATCAGGAAGAGG+AGG | 0.602883 | 4.4:-87487865 | None:intergenic |
| GTTTGAATCAGACATGGTGG+TGG | 0.603986 | 4.4:+87487918 | MS.gene068245:CDS |
| GGGCTACCGTTTCTCCAACT+GGG | 0.604428 | 4.4:+87495403 | MS.gene068245:CDS |
| ACTGATATGTTCTATCATGA+TGG | 0.604476 | 4.4:-87489546 | None:intergenic |
| AGATGTGGCACATTTGATGC+AGG | 0.604705 | 4.4:+87497399 | MS.gene068245:CDS |
| GAAGCATCAGTTCCCTGGAA+TGG | 0.605315 | 4.4:+87491191 | MS.gene068245:CDS |
| GATGTTGGCATCAAGTATCG+TGG | 0.608808 | 4.4:+87497277 | MS.gene068245:CDS |
| TGGGCATAAGCTTGGTCACG+TGG | 0.610574 | 4.4:+87497297 | MS.gene068245:CDS |
| TGAGTCTCATCATTCCCAGT+TGG | 0.616048 | 4.4:-87495417 | None:intergenic |
| AAATGTGCCACATCTGCAGA+AGG | 0.617429 | 4.4:-87497391 | None:intergenic |
| ATGTTGGCATCAAGTATCGT+GGG | 0.619053 | 4.4:+87497278 | MS.gene068245:CDS |
| AACCGTTAAAATTCACAACA+AGG | 0.623265 | 4.4:+87497225 | MS.gene068245:CDS |
| GTGGTGGAAGAGGTAGAGGA+TGG | 0.631506 | 4.4:+87487934 | MS.gene068245:CDS |
| GGCGTACCATTGAGTTGGGG+AGG | 0.637262 | 4.4:+87492930 | MS.gene068245:CDS |
| GTCACGTGGAAACTAGGGGT+TGG | 0.637913 | 4.4:+87497311 | MS.gene068245:CDS |
| GACGATGACATTCATACCAA+AGG | 0.638212 | 4.4:+87491064 | MS.gene068245:CDS |
| GACACCTTGATTACTCCGCA+AGG | 0.640024 | 4.4:+87488315 | MS.gene068245:CDS |
| CCTGTTTCATGAAGTAATGA+CGG | 0.642373 | 4.4:-87487693 | None:intergenic |
| TGGGACTGATGCAATATACA+CGG | 0.643222 | 4.4:-87495766 | None:intergenic |
| ATGCATGGTTCTCCACATTG+TGG | 0.645063 | 4.4:-87489443 | None:intergenic |
| TTCTCCCTTAACACCTCAGG+AGG | 0.646475 | 4.4:-87489982 | None:intergenic |
| ACAGATCATGCATTGAAGGA+CGG | 0.646997 | 4.4:+87492909 | MS.gene068245:CDS |
| GCATGAAGAAGGATTTGTAA+GGG | 0.648368 | 4.4:-87489712 | None:intergenic |
| ACTGGGAATGATGAGACTCA+TGG | 0.651468 | 4.4:+87495420 | MS.gene068245:CDS |
| GGGACTGATGCAATATACAC+GGG | 0.657187 | 4.4:-87495765 | None:intergenic |
| CGCGGCGTAGGAGGAATGCG+CGG | 0.658686 | 4.4:-87487743 | None:intergenic |
| ACACCTTGATTACTCCGCAA+GGG | 0.659066 | 4.4:+87488316 | MS.gene068245:CDS |
| TACAACTCGCATCACCCTTG+CGG | 0.661274 | 4.4:-87488330 | None:intergenic |
| CTTGGTCACGTGGAAACTAG+GGG | 0.662536 | 4.4:+87497307 | MS.gene068245:CDS |
| GTACTGGATGCAACTAGATG+AGG | 0.664962 | 4.4:+87497252 | MS.gene068245:CDS |
| GACGGCGTACCATTGAGTTG+GGG | 0.674436 | 4.4:+87492927 | MS.gene068245:CDS |
| GCCGGAGTTTGAATCAGACA+TGG | 0.674532 | 4.4:+87487912 | MS.gene068245:CDS |
| GCCGCGTCACTCAAGAACAC+CGG | 0.676024 | 4.4:+87487760 | MS.gene068245:CDS |
| TGATATTAATGATCCTCCTG+AGG | 0.685983 | 4.4:+87489969 | MS.gene068245:CDS |
| GCCGGTGTTCTTGAGTGACG+CGG | 0.686332 | 4.4:-87487761 | None:intergenic |
| TCATTACTTCATGAAACAGG+CGG | 0.689568 | 4.4:+87487696 | MS.gene068245:CDS |
| GGTGATGCGAGTTGTAACAT+GGG | 0.702721 | 4.4:+87488337 | MS.gene068245:CDS |
| AAAATGCGAGGAGATACGAA+AGG | 0.709702 | 4.4:+87489852 | MS.gene068245:CDS |
| GAGAACATAGCTCACAACTG+TGG | 0.711730 | 4.4:+87493479 | MS.gene068245:CDS |
| AATACAGGATGGCCACAATG+TGG | 0.720097 | 4.4:+87489431 | MS.gene068245:intron |
| GACACATCAGCACTTAACGG+TGG | 0.729489 | 4.4:-87497193 | None:intergenic |
| TTGATAAAGAGAATCTACCA+CGG | 0.741725 | 4.4:-87489800 | None:intergenic |
| GGAGTTTGAATCAGACATGG+TGG | 0.754454 | 4.4:+87487915 | MS.gene068245:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 87487658 | 87497522 | 87487658 | ID=MS.gene068245 |
| chr4.4 | mRNA | 87487658 | 87497522 | 87487658 | ID=MS.gene068245.t1;Parent=MS.gene068245 |
| chr4.4 | exon | 87487658 | 87488171 | 87487658 | ID=MS.gene068245.t1.exon1;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87487658 | 87488171 | 87487658 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87488315 | 87488490 | 87488315 | ID=MS.gene068245.t1.exon2;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87488315 | 87488490 | 87488315 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87488667 | 87488890 | 87488667 | ID=MS.gene068245.t1.exon3;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87488667 | 87488890 | 87488667 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87489438 | 87490072 | 87489438 | ID=MS.gene068245.t1.exon4;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87489438 | 87490072 | 87489438 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87491056 | 87491085 | 87491056 | ID=MS.gene068245.t1.exon5;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87491056 | 87491085 | 87491056 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87491151 | 87491212 | 87491151 | ID=MS.gene068245.t1.exon6;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87491151 | 87491212 | 87491151 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87492818 | 87492951 | 87492818 | ID=MS.gene068245.t1.exon7;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87492818 | 87492951 | 87492818 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87493394 | 87493536 | 87493394 | ID=MS.gene068245.t1.exon8;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87493394 | 87493536 | 87493394 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87494080 | 87494151 | 87494080 | ID=MS.gene068245.t1.exon9;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87494080 | 87494151 | 87494080 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87495334 | 87495441 | 87495334 | ID=MS.gene068245.t1.exon10;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87495334 | 87495441 | 87495334 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87495642 | 87495827 | 87495642 | ID=MS.gene068245.t1.exon11;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87495642 | 87495827 | 87495642 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| chr4.4 | exon | 87497143 | 87497522 | 87497143 | ID=MS.gene068245.t1.exon12;Parent=MS.gene068245.t1 |
| chr4.4 | CDS | 87497143 | 87497522 | 87497143 | ID=cds.MS.gene068245.t1;Parent=MS.gene068245.t1 |
| Gene Sequence |
| Protein sequence |