AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069555


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069555.t1 MTR_8g098675 99.379 322 2 0 1 322 415 736 0.0 668
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069555.t1 AT5G41370 90.994 322 29 0 1 322 417 738 0.0 615
MS.gene069555.t1 AT5G41360 90.683 322 29 1 1 322 417 737 0.0 606
MS.gene069555.t1 AT5G41360 90.683 322 29 1 1 322 417 737 0.0 605

Find 68 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATGCTCGGAATTTATT+TGG 0.143949 4.1:-5551882 None:intergenic
TGATCAAGGTTACAGCTTTA+AGG 0.170987 4.1:+5553037 MS.gene069555:CDS
AGGCTTCACCTGTCTCTTCT+TGG 0.278361 4.1:-5551553 None:intergenic
CATACAGTTTGGGACCAATT+AGG 0.307490 4.1:-5551416 None:intergenic
CCAATTTGCCTCATACAGTT+TGG 0.314774 4.1:-5551427 None:intergenic
TGAATTATCACATTTGCTTC+AGG 0.315902 4.1:-5552465 None:intergenic
AATTGGTTGGATCTTGTAAA+AGG 0.316540 4.1:+5551444 MS.gene069555:CDS
AGCGTCTGGGTCGTATTCTT+AGG 0.321135 4.1:+5552526 MS.gene069555:CDS
ACAGATCTGAACTTCCTAAT+TGG 0.321620 4.1:+5551402 MS.gene069555:CDS
CATTGGTTTGCGGAGTTTCA+TGG 0.328602 4.1:-5551988 None:intergenic
TATTTGGATTCATCACATAA+AGG 0.329096 4.1:-5551866 None:intergenic
CCAAACTGTATGAGGCAAAT+TGG 0.337223 4.1:+5551427 MS.gene069555:CDS
AACAGTATTTACGTCTTTGC+TGG 0.343453 4.1:-5552154 None:intergenic
ATTTGGATTCATCACATAAA+GGG 0.355854 4.1:-5551865 None:intergenic
CTCCGCAAACCAATGATATA+TGG 0.363195 4.1:+5551996 MS.gene069555:CDS
GCGTCAAGAAGCACAGCGTC+TGG 0.379944 4.1:+5552512 MS.gene069555:CDS
CTTGTAGCACCATATATCAT+TGG 0.385865 4.1:-5552005 None:intergenic
CAATTTGCCTCATACAGTTT+GGG 0.388906 4.1:-5551426 None:intergenic
TAAATGGCAGGGAAAGCTTC+AGG 0.390345 4.1:+5552781 MS.gene069555:intron
ACTAAATCTCACTGCAAACT+TGG 0.417365 4.1:+5551258 MS.gene069555:CDS
TATCACCACGTGCCCTTTCG+TGG 0.435050 4.1:-5551920 None:intergenic
TCATCATCTCGATGATCAAC+TGG 0.437109 4.1:+5554435 MS.gene069555:CDS
CACTGCAAACTTGGGCTCAC+AGG 0.460451 4.1:+5551267 MS.gene069555:CDS
AATTGGTCCCAAACTGTATG+AGG 0.461446 4.1:+5551419 MS.gene069555:CDS
TCTCTTCACATGCTGGTTCA+AGG 0.464065 4.1:+5552490 MS.gene069555:CDS
ATGTACAGTGTGCTGAAGTA+TGG 0.466560 4.1:+5551481 MS.gene069555:CDS
ACCTATCAGGTATTGAATGC+TGG 0.476448 4.1:+5554534 MS.gene069555:intron
TTCTCATAAATTACCACGAA+AGG 0.478217 4.1:+5551907 MS.gene069555:CDS
AGTGCAATGTCAGGTGCAAA+AGG 0.493706 4.1:+5554642 MS.gene069555:CDS
GCGTCTGGGTCGTATTCTTA+GGG 0.498202 4.1:+5552527 MS.gene069555:CDS
ATTCAGATCTCTTCACATGC+TGG 0.501954 4.1:+5552483 MS.gene069555:CDS
CAATGATATATGGTGCTACA+AGG 0.508056 4.1:+5552006 MS.gene069555:CDS
GGATGGTTTATGTGGAGTAC+AGG 0.509532 4.1:+5554664 MS.gene069555:CDS
TGGTTGGATCTTGTAAAAGG+TGG 0.512861 4.1:+5551447 MS.gene069555:CDS
GGATCGATGAGTGCAATGTC+AGG 0.522160 4.1:+5554633 MS.gene069555:CDS
TCTCATAAATTACCACGAAA+GGG 0.522463 4.1:+5551908 MS.gene069555:CDS
ACTGTATGAGGCAAATTGGT+TGG 0.524427 4.1:+5551431 MS.gene069555:CDS
ATAAATCTGTACCTGGGTAT+CGG 0.525157 4.1:-5552861 None:intergenic
TGCAGCTACACTTGTGAGAG+AGG 0.532637 4.1:+5551368 MS.gene069555:intron
AAAAGTGCTCGTCGTTCTCA+AGG 0.533168 4.1:+5554612 MS.gene069555:CDS
AAGCTTCAGGATAGGATGGC+TGG 0.541968 4.1:+5552794 MS.gene069555:CDS
TGCAAAAGGGATGGTTTATG+TGG 0.544520 4.1:+5554656 MS.gene069555:CDS
AGAGAACTCCAAGAAGAGAC+AGG 0.548803 4.1:+5551545 MS.gene069555:CDS
AGCTTGCCTCCATCTGATGA+AGG 0.551771 4.1:+5554397 MS.gene069555:CDS
CCTGGGTATCGGTCGACACA+AGG 0.553236 4.1:-5552850 None:intergenic
CACCATATATCATTGGTTTG+CGG 0.555102 4.1:-5551998 None:intergenic
CGTCAAGAAGCACAGCGTCT+GGG 0.556542 4.1:+5552513 MS.gene069555:CDS
CCTTGTGTCGACCGATACCC+AGG 0.557821 4.1:+5552850 MS.gene069555:CDS
GCGGAGTTTCATGGCATACT+CGG 0.559802 4.1:-5551979 None:intergenic
CTAAATCTCACTGCAAACTT+GGG 0.561239 4.1:+5551259 MS.gene069555:CDS
TATCATATCAGGCAATAAAG+AGG 0.573764 4.1:-5554695 None:intergenic
TTATGAGAAACTCACATGCT+CGG 0.574806 4.1:-5551893 None:intergenic
GGGTCGTATTCTTAGGGCAA+AGG 0.588925 4.1:+5552533 MS.gene069555:CDS
AGATGTATTACTCAACTAAG+AGG 0.589026 4.1:+5553000 MS.gene069555:CDS
GGGAAAGCTTCAGGATAGGA+TGG 0.590165 4.1:+5552790 MS.gene069555:intron
AATGCTGGTGATGATGCAGT+TGG 0.591042 4.1:+5554549 MS.gene069555:CDS
TTATTTGCAGCCATGTTGAG+AGG 0.593332 4.1:+5552106 MS.gene069555:intron
GATGATCAACTGGCACTACT+CGG 0.594721 4.1:+5554445 MS.gene069555:CDS
AAGCGAGATCCTTCATCAGA+TGG 0.620834 4.1:-5554406 None:intergenic
AATGTCAGGTGCAAAAGGGA+TGG 0.623263 4.1:+5554647 MS.gene069555:CDS
TCAACTGGCACTACTCGGAA+AGG 0.628539 4.1:+5554450 MS.gene069555:CDS
TAGGATGGCTGGTGGCAAAG+AGG 0.635488 4.1:+5552805 MS.gene069555:CDS
GGCAGGGAAAGCTTCAGGAT+AGG 0.638026 4.1:+5552786 MS.gene069555:intron
CGAGATCCTTCATCAGATGG+AGG 0.648662 4.1:-5554403 None:intergenic
GTGCAATGTCAGGTGCAAAA+GGG 0.652794 4.1:+5554643 MS.gene069555:CDS
CTGGGTATCGGTCGACACAA+GGG 0.670656 4.1:-5552849 None:intergenic
AATTACCACGAAAGGGCACG+TGG 0.685034 4.1:+5551915 MS.gene069555:CDS
CTTCAGGATAGGATGGCTGG+TGG 0.687755 4.1:+5552797 MS.gene069555:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTTAGTTAAAATTATA+AGG + chr4.1:5551590-5551609 MS.gene069555:intron 10.0%
!!! AAAAAAAAAACACTTTTTTT+GGG + chr4.1:5553398-5553417 MS.gene069555:intron 10.0%
!!! ATTTCAAAAAAATAGATTTT+GGG - chr4.1:5553342-5553361 None:intergenic 10.0%
!!! TAAAAAAAAAACACTTTTTT+TGG + chr4.1:5553397-5553416 MS.gene069555:intron 10.0%
!!! TATTTCAAAAAAATAGATTT+TGG - chr4.1:5553343-5553362 None:intergenic 10.0%
!! AAAATAAAACTAAAGAAAAC+AGG - chr4.1:5552201-5552220 None:intergenic 15.0%
!! ATAAAAAAAAGATGTTAACA+TGG - chr4.1:5552367-5552386 None:intergenic 15.0%
!! ATCCAATAATCAATAATATA+TGG - chr4.1:5552898-5552917 None:intergenic 15.0%
!! ATTCAAATTCATGAATTAAA+TGG + chr4.1:5552765-5552784 MS.gene069555:intron 15.0%
!!! AAATTTAGAATTCAATATGT+AGG - chr4.1:5552647-5552666 None:intergenic 15.0%
!!! ATAGTTTTTTTATATGTAAC+AGG + chr4.1:5554366-5554385 MS.gene069555:intron 15.0%
!!! ATCTATTTTTTTGAAATACA+AGG + chr4.1:5553345-5553364 MS.gene069555:intron 15.0%
!!! CGTTTGTTTTAATTTTTTTA+GGG + chr4.1:5553201-5553220 MS.gene069555:intron 15.0%
!!! TTTTCTTTAGTTTTATTTTG+AGG + chr4.1:5552202-5552221 MS.gene069555:intron 15.0%
!!! TTTTTTTTTAGTGTTTGTTT+AGG + chr4.1:5553245-5553264 MS.gene069555:intron 15.0%
!! AATACTTAAACTATCATTCA+AGG + chr4.1:5552937-5552956 MS.gene069555:intron 20.0%
!! ACTTACTTTAAATTAGACAA+AGG - chr4.1:5553609-5553628 None:intergenic 20.0%
!! CTTACTTTAAATTAGACAAA+GGG - chr4.1:5553608-5553627 None:intergenic 20.0%
!! GTTAATACTATTGATATTGT+GGG + chr4.1:5552336-5552355 MS.gene069555:intron 20.0%
!! TGTTAATACTATTGATATTG+TGG + chr4.1:5552335-5552354 MS.gene069555:intron 20.0%
!!! AACTTATTTTTAATGCTCAA+TGG + chr4.1:5554236-5554255 MS.gene069555:intron 20.0%
!!! AATGAGTAAAAGCTTTTATT+TGG + chr4.1:5553750-5553769 MS.gene069555:intron 20.0%
!!! AGGTATTTTCTTTCAATTTT+CGG + chr4.1:5553057-5553076 MS.gene069555:intron 20.0%
!!! GCGTTTGTTTTAATTTTTTT+AGG + chr4.1:5553200-5553219 MS.gene069555:intron 20.0%
!!! TATTTTTTTGAAATACAAGG+AGG + chr4.1:5553348-5553367 MS.gene069555:intron 20.0%
!!! TGAGAATTTGAAATTTTTGT+TGG + chr4.1:5554301-5554320 MS.gene069555:intron 20.0%
!!! TTGTCTAATTTAAAGTAAGT+TGG + chr4.1:5553609-5553628 MS.gene069555:intron 20.0%
! AAATTCATGAATTAAATGGC+AGG + chr4.1:5552769-5552788 MS.gene069555:intron 25.0%
! AAATTTCAAATTCTCAAGCA+TGG - chr4.1:5554297-5554316 None:intergenic 25.0%
! AATTCATGAATTAAATGGCA+GGG + chr4.1:5552770-5552789 MS.gene069555:intron 25.0%
! ATTTGGATTCATCACATAAA+GGG - chr4.1:5551868-5551887 None:intergenic 25.0%
! CTAATTGAAATTGTTTCACT+AGG - chr4.1:5553641-5553660 None:intergenic 25.0%
! GTAAACAAACAAAATAGCTT+CGG + chr4.1:5553423-5553442 MS.gene069555:intron 25.0%
! TAGAATTCAATATGTAGGAT+GGG - chr4.1:5552642-5552661 None:intergenic 25.0%
! TATTTGGATTCATCACATAA+AGG - chr4.1:5551869-5551888 None:intergenic 25.0%
! TGACTCAAATGAAAACTATT+AGG + chr4.1:5553306-5553325 MS.gene069555:intron 25.0%
! TGCTTTGTATATTTCAAGAA+GGG - chr4.1:5553706-5553725 None:intergenic 25.0%
! TGTTAGGAAAAAATAAGAAG+AGG + chr4.1:5553959-5553978 MS.gene069555:intron 25.0%
! TTAGAATTCAATATGTAGGA+TGG - chr4.1:5552643-5552662 None:intergenic 25.0%
! TTGCTTTGTATATTTCAAGA+AGG - chr4.1:5553707-5553726 None:intergenic 25.0%
! TTTGTACATTTACTTTACTG+TGG + chr4.1:5553128-5553147 MS.gene069555:intron 25.0%
!! GGCCATATATTATTGATTAT+TGG + chr4.1:5552893-5552912 MS.gene069555:intron 25.0%
!! GTATCTTGGAAATATCATTT+TGG + chr4.1:5554085-5554104 MS.gene069555:intron 25.0%
!! TAAATTTCATTTGTTTGCTG+TGG + chr4.1:5552660-5552679 MS.gene069555:intron 25.0%
!!! AAAATTATAAGGAGCATTTG+TGG + chr4.1:5551601-5551620 MS.gene069555:intron 25.0%
!!! AAATACTGTTTTTCTTTCCA+AGG + chr4.1:5552167-5552186 MS.gene069555:CDS 25.0%
!!! AACTTCTTTTAAGTAGGTTA+TGG - chr4.1:5553683-5553702 None:intergenic 25.0%
!!! AGTATTAACAAGAAGTACTA+AGG - chr4.1:5552325-5552344 None:intergenic 25.0%
!!! CAGCAATTTTTAATTGATCA+AGG + chr4.1:5553023-5553042 MS.gene069555:CDS 25.0%
!!! GTATGGTAACTTGTTTTTAT+TGG + chr4.1:5552605-5552624 MS.gene069555:intron 25.0%
AAATGAGATTGTAGGCTTAA+AGG + chr4.1:5553890-5553909 MS.gene069555:intron 30.0%
AAATTACCACAAGTGCAATA+GGG - chr4.1:5553089-5553108 None:intergenic 30.0%
AACATAAATTCCTCACAACA+TGG - chr4.1:5553943-5553962 None:intergenic 30.0%
AACTCAATTCCAATTCAACA+GGG - chr4.1:5554489-5554508 None:intergenic 30.0%
AAGTTACCATACATACAACA+GGG - chr4.1:5552597-5552616 None:intergenic 30.0%
AATAACACATTGACAGCATT+AGG - chr4.1:5553155-5553174 None:intergenic 30.0%
AATGAGATTGTAGGCTTAAA+GGG + chr4.1:5553891-5553910 MS.gene069555:intron 30.0%
AATTGGTTGGATCTTGTAAA+AGG + chr4.1:5551444-5551463 MS.gene069555:CDS 30.0%
ACAAATTCATGTGAATCTTG+AGG - chr4.1:5553113-5553132 None:intergenic 30.0%
ACATGAAATAAATCTGTACC+TGG - chr4.1:5552871-5552890 None:intergenic 30.0%
ACTATCATTCAAGGAGTTTA+TGG + chr4.1:5552946-5552965 MS.gene069555:intron 30.0%
AGAATAAAAGAAACGATGCA+AGG - chr4.1:5552418-5552437 None:intergenic 30.0%
AGATGTATTACTCAACTAAG+AGG + chr4.1:5553000-5553019 MS.gene069555:CDS 30.0%
AGTAGCAATTAAAAGACAGA+AGG - chr4.1:5554183-5554202 None:intergenic 30.0%
AGTTGTCTTCATGCAATATT+TGG - chr4.1:5554220-5554239 None:intergenic 30.0%
ATACATTGCAGTTTCTGTTT+AGG + chr4.1:5551646-5551665 MS.gene069555:intron 30.0%
ATATCCTTACGAGTTTCATT+AGG + chr4.1:5552261-5552280 MS.gene069555:intron 30.0%
CATGAAATAAATCTGTACCT+GGG - chr4.1:5552870-5552889 None:intergenic 30.0%
GGAAAAAATAAGAAGAGGAA+TGG + chr4.1:5553964-5553983 MS.gene069555:intron 30.0%
GTACAGATTTATTTCATGTC+AGG + chr4.1:5552872-5552891 MS.gene069555:intron 30.0%
TCTCATAAATTACCACGAAA+GGG + chr4.1:5551908-5551927 MS.gene069555:CDS 30.0%
TGAATTATCACATTTGCTTC+AGG - chr4.1:5552468-5552487 None:intergenic 30.0%
TGTTGTGAGGAATTTATGTT+AGG + chr4.1:5553943-5553962 MS.gene069555:intron 30.0%
TTATTTCCCTGTTGTATGTA+TGG + chr4.1:5552588-5552607 MS.gene069555:intron 30.0%
TTCTCATAAATTACCACGAA+AGG + chr4.1:5551907-5551926 MS.gene069555:CDS 30.0%
TTGGGCAAGAATGATTATTT+GGG + chr4.1:5553176-5553195 MS.gene069555:intron 30.0%
TTTAAGCCTACAATCTCATT+TGG - chr4.1:5553891-5553910 None:intergenic 30.0%
TTTGGGCAAGAATGATTATT+TGG + chr4.1:5553175-5553194 MS.gene069555:intron 30.0%
! AAAAGCTTTTACTCATTCAC+AGG - chr4.1:5553747-5553766 None:intergenic 30.0%
! ATTGAGAAATTTGAGACTGA+GGG + chr4.1:5554049-5554068 MS.gene069555:intron 30.0%
! GCGAAAAATTCTTTTGTCAT+TGG - chr4.1:5551510-5551529 None:intergenic 30.0%
! TATTGAGAAATTTGAGACTG+AGG + chr4.1:5554048-5554067 MS.gene069555:intron 30.0%
!! ATTAGGTTTGTTGAAGGAAA+TGG + chr4.1:5553832-5553851 MS.gene069555:intron 30.0%
!! GTAAAAGCTTTTATTTGGTG+CGG + chr4.1:5553755-5553774 MS.gene069555:intron 30.0%
!! TGGAAATATCATTTTGGTGT+TGG + chr4.1:5554091-5554110 MS.gene069555:intron 30.0%
!!! ATCATTTTGGTGTTGGTTAT+GGG + chr4.1:5554098-5554117 MS.gene069555:intron 30.0%
!!! GCTGTCAATGTGTTATTTTT+GGG + chr4.1:5553158-5553177 MS.gene069555:intron 30.0%
!!! TATCATTTTGGTGTTGGTTA+TGG + chr4.1:5554097-5554116 MS.gene069555:intron 30.0%
!!! TGCTGTCAATGTGTTATTTT+TGG + chr4.1:5553157-5553176 MS.gene069555:intron 30.0%
AACAGTATTTACGTCTTTGC+TGG - chr4.1:5552157-5552176 None:intergenic 35.0%
AAGATTTACATAGTTCCCAG+AGG - chr4.1:5551576-5551595 None:intergenic 35.0%
ACAGAAACTGCAATGTATCA+TGG - chr4.1:5551644-5551663 None:intergenic 35.0%
ACAGAAGGATGAAGATTGAA+TGG - chr4.1:5554168-5554187 None:intergenic 35.0%
ACAGATCTGAACTTCCTAAT+TGG + chr4.1:5551402-5551421 MS.gene069555:CDS 35.0%
ACTAAATCTCACTGCAAACT+TGG + chr4.1:5551258-5551277 MS.gene069555:CDS 35.0%
ATAAATCTGTACCTGGGTAT+CGG - chr4.1:5552864-5552883 None:intergenic 35.0%
ATTATTTCACTCAGCAGAAG+AGG - chr4.1:5551339-5551358 None:intergenic 35.0%
ATTCGAACAAACAAGCAACT+TGG - chr4.1:5553794-5553813 None:intergenic 35.0%
CAAATTACCACAAGTGCAAT+AGG - chr4.1:5553090-5553109 None:intergenic 35.0%
CAACTCAATTCCAATTCAAC+AGG - chr4.1:5554490-5554509 None:intergenic 35.0%
CAAGTTACCATACATACAAC+AGG - chr4.1:5552598-5552617 None:intergenic 35.0%
CAATTTGCCTCATACAGTTT+GGG - chr4.1:5551429-5551448 None:intergenic 35.0%
CTAAATAGCGTTTACCTATC+AGG + chr4.1:5554521-5554540 MS.gene069555:intron 35.0%
CTAAATCTCACTGCAAACTT+GGG + chr4.1:5551259-5551278 MS.gene069555:CDS 35.0%
CTAACCTAATGAAACTCGTA+AGG - chr4.1:5552268-5552287 None:intergenic 35.0%
CTTGTAGCACCATATATCAT+TGG - chr4.1:5552008-5552027 None:intergenic 35.0%
TCACATGCTCGGAATTTATT+TGG - chr4.1:5551885-5551904 None:intergenic 35.0%
TCTTCATGCAATATTTGGCA+CGG - chr4.1:5554215-5554234 None:intergenic 35.0%
TGAATTCAAGCAAGTGAACT+AGG - chr4.1:5551736-5551755 None:intergenic 35.0%
TGAGAGGACAAAAATTCTAC+AGG + chr4.1:5552122-5552141 MS.gene069555:CDS 35.0%
TGATCAAGGTTACAGCTTTA+AGG + chr4.1:5553037-5553056 MS.gene069555:CDS 35.0%
TTATGAGAAACTCACATGCT+CGG - chr4.1:5551896-5551915 None:intergenic 35.0%
TTCAATATGTAGGATGGGTA+TGG - chr4.1:5552637-5552656 None:intergenic 35.0%
TTGTTGATCATTACATGTGC+AGG + chr4.1:5551842-5551861 MS.gene069555:intron 35.0%
! AAGTACTCTAGGAAGACATT+AGG + chr4.1:5553815-5553834 MS.gene069555:intron 35.0%
! CGTTTCTTTTATTCTCAGGT+TGG + chr4.1:5552423-5552442 MS.gene069555:intron 35.0%
! GAATTTTTGTCCTCTCAACA+TGG - chr4.1:5552119-5552138 None:intergenic 35.0%
! GCATCGTTTCTTTTATTCTC+AGG + chr4.1:5552419-5552438 MS.gene069555:intron 35.0%
! TTGTTCGAATGAAGTACTCT+AGG + chr4.1:5553804-5553823 MS.gene069555:intron 35.0%
!! ATTTGTTTGCTGTGGAAAGT+GGG + chr4.1:5552668-5552687 MS.gene069555:intron 35.0%
!! CAATGATATATGGTGCTACA+AGG + chr4.1:5552006-5552025 MS.gene069555:CDS 35.0%
!! CACCATATATCATTGGTTTG+CGG - chr4.1:5552001-5552020 None:intergenic 35.0%
!! GAAGACATTAGGTTTGTTGA+AGG + chr4.1:5553826-5553845 MS.gene069555:intron 35.0%
!! GAAGGGAACTTCTTTTAAGT+AGG - chr4.1:5553689-5553708 None:intergenic 35.0%
!!! GTCTTTTGAAGCTGTGTTTT+GGG + chr4.1:5552049-5552068 MS.gene069555:intron 35.0%
!!! TCTTTTGAAGCTGTGTTTTG+GGG + chr4.1:5552050-5552069 MS.gene069555:intron 35.0%
AAAAAAACCTGCTCGAACTG+TGG + chr4.1:5554263-5554282 MS.gene069555:intron 40.0%
AAATTCTCAAGCATGGCATC+GGG - chr4.1:5554290-5554309 None:intergenic 40.0%
AATTCCTCACAACATGGTCT+TGG - chr4.1:5553937-5553956 None:intergenic 40.0%
AATTGGTCCCAAACTGTATG+AGG + chr4.1:5551419-5551438 MS.gene069555:CDS 40.0%
ACCAGCATTCAATACCTGAT+AGG - chr4.1:5554538-5554557 None:intergenic 40.0%
ACTGTATGAGGCAAATTGGT+TGG + chr4.1:5551431-5551450 MS.gene069555:CDS 40.0%
ATGTACAGTGTGCTGAAGTA+TGG + chr4.1:5551481-5551500 MS.gene069555:CDS 40.0%
ATTCAGATCTCTTCACATGC+TGG + chr4.1:5552483-5552502 MS.gene069555:CDS 40.0%
CAAATTCTCAAGCATGGCAT+CGG - chr4.1:5554291-5554310 None:intergenic 40.0%
CAATTCAACAGGGATACAGA+TGG - chr4.1:5554479-5554498 None:intergenic 40.0%
CAGAGAACATTGTTCTCTGT+AGG + chr4.1:5554121-5554140 MS.gene069555:intron 40.0%
CATCTGTATCCCTGTTGAAT+TGG + chr4.1:5554477-5554496 MS.gene069555:intron 40.0%
CCAAACTGTATGAGGCAAAT+TGG + chr4.1:5551427-5551446 MS.gene069555:CDS 40.0%
CCAATTTGCCTCATACAGTT+TGG - chr4.1:5551430-5551449 None:intergenic 40.0%
CTCCGCAAACCAATGATATA+TGG + chr4.1:5551996-5552015 MS.gene069555:CDS 40.0%
CTTCATGCAATATTTGGCAC+GGG - chr4.1:5554214-5554233 None:intergenic 40.0%
GAAAACAGGAACAGATACCT+TGG - chr4.1:5552187-5552206 None:intergenic 40.0%
GAATGGAAAGAATGCTGATG+CGG + chr4.1:5553981-5554000 MS.gene069555:intron 40.0%
GATTGTAGGCTTAAAGGGAT+AGG + chr4.1:5553896-5553915 MS.gene069555:intron 40.0%
GCATGTATAGATTGAGACCT+TGG - chr4.1:5554344-5554363 None:intergenic 40.0%
TCATCATCTCGATGATCAAC+TGG + chr4.1:5554435-5554454 MS.gene069555:CDS 40.0%
TCTCAACATGGCTGCAAATA+AGG - chr4.1:5552107-5552126 None:intergenic 40.0%
TGCAAAAGGGATGGTTTATG+TGG + chr4.1:5554656-5554675 MS.gene069555:CDS 40.0%
TGGTTGGATCTTGTAAAAGG+TGG + chr4.1:5551447-5551466 MS.gene069555:CDS 40.0%
TGTTCGCCAAATGAGATTGT+AGG + chr4.1:5553882-5553901 MS.gene069555:intron 40.0%
TTATTTGCAGCCATGTTGAG+AGG + chr4.1:5552106-5552125 MS.gene069555:intron 40.0%
! AGACCTTGGCAAGATAGTTT+TGG - chr4.1:5554330-5554349 None:intergenic 40.0%
! CAATAATGCCTTTTGCCAGT+GGG + chr4.1:5552731-5552750 MS.gene069555:intron 40.0%
! CATACAGTTTGGGACCAATT+AGG - chr4.1:5551419-5551438 None:intergenic 40.0%
! TCAATAATGCCTTTTGCCAG+TGG + chr4.1:5552730-5552749 MS.gene069555:intron 40.0%
!! ACCTATCAGGTATTGAATGC+TGG + chr4.1:5554534-5554553 MS.gene069555:intron 40.0%
!! ATTGTGCTGCTTTCGTTTAC+AGG + chr4.1:5552977-5552996 MS.gene069555:intron 40.0%
!! CATTTGTTTGCTGTGGAAAG+TGG + chr4.1:5552667-5552686 MS.gene069555:intron 40.0%
!!! CGTCTTTTGAAGCTGTGTTT+TGG + chr4.1:5552048-5552067 MS.gene069555:intron 40.0%
AAGCGAGATCCTTCATCAGA+TGG - chr4.1:5554409-5554428 None:intergenic 45.0%
AATGTCAGGTGCAAAAGGGA+TGG + chr4.1:5554647-5554666 MS.gene069555:CDS 45.0%
ACAGGTATGCTGTTATGCAC+TGG + chr4.1:5551285-5551304 MS.gene069555:intron 45.0%
AGAGAACTCCAAGAAGAGAC+AGG + chr4.1:5551545-5551564 MS.gene069555:CDS 45.0%
AGTGCAATGTCAGGTGCAAA+AGG + chr4.1:5554642-5554661 MS.gene069555:CDS 45.0%
ATGATCTTCACACATGCGCA+AGG + chr4.1:5551769-5551788 MS.gene069555:intron 45.0%
CCACCAAAACTATCTTGCCA+AGG + chr4.1:5554324-5554343 MS.gene069555:intron 45.0%
GATGATCAACTGGCACTACT+CGG + chr4.1:5554445-5554464 MS.gene069555:CDS 45.0%
GGATGGTTTATGTGGAGTAC+AGG + chr4.1:5554664-5554683 MS.gene069555:CDS 45.0%
GTGCAATGTCAGGTGCAAAA+GGG + chr4.1:5554643-5554662 MS.gene069555:CDS 45.0%
TAAATGGCAGGGAAAGCTTC+AGG + chr4.1:5552781-5552800 MS.gene069555:intron 45.0%
! AATGCTGGTGATGATGCAGT+TGG + chr4.1:5554549-5554568 MS.gene069555:CDS 45.0%
! AATTTGAGACTGAGGGAGTG+TGG + chr4.1:5554056-5554075 MS.gene069555:intron 45.0%
! ATTTGAGACTGAGGGAGTGT+GGG + chr4.1:5554057-5554076 MS.gene069555:intron 45.0%
!! AAAAGTGCTCGTCGTTCTCA+AGG + chr4.1:5554612-5554631 MS.gene069555:CDS 45.0%
!! CATTGGTTTGCGGAGTTTCA+TGG - chr4.1:5551991-5552010 None:intergenic 45.0%
!! TCTCTTCACATGCTGGTTCA+AGG + chr4.1:5552490-5552509 MS.gene069555:CDS 45.0%
!!! CCTTGGCAAGATAGTTTTGG+TGG - chr4.1:5554327-5554346 None:intergenic 45.0%
!!! AAAAAAAATATACTTTTTTT+GGG + chr4.1:5553475-5553494 MS.gene069555:intron 5.0%
!!! TAAAAAAAATATACTTTTTT+TGG + chr4.1:5553474-5553493 MS.gene069555:intron 5.0%
AAGAGACAGGTGAAGCCTCT+GGG + chr4.1:5551558-5551577 MS.gene069555:intron 50.0%
AAGCTTCAGGATAGGATGGC+TGG + chr4.1:5552794-5552813 MS.gene069555:CDS 50.0%
AGCGTCTGGGTCGTATTCTT+AGG + chr4.1:5552526-5552545 MS.gene069555:CDS 50.0%
AGCTTGCCTCCATCTGATGA+AGG + chr4.1:5554397-5554416 MS.gene069555:CDS 50.0%
AGGCTTCACCTGTCTCTTCT+TGG - chr4.1:5551556-5551575 None:intergenic 50.0%
CGAGATCCTTCATCAGATGG+AGG - chr4.1:5554406-5554425 None:intergenic 50.0%
CTCACTCCCTATTGCACTTG+TGG + chr4.1:5553080-5553099 MS.gene069555:intron 50.0%
CTGTCCAAGACCATGTTGTG+AGG + chr4.1:5553930-5553949 MS.gene069555:intron 50.0%
GCGGAGTTTCATGGCATACT+CGG - chr4.1:5551982-5552001 None:intergenic 50.0%
GCGTCTGGGTCGTATTCTTA+GGG + chr4.1:5552527-5552546 MS.gene069555:CDS 50.0%
GGATCGATGAGTGCAATGTC+AGG + chr4.1:5554633-5554652 MS.gene069555:CDS 50.0%
GGGAAAGCTTCAGGATAGGA+TGG + chr4.1:5552790-5552809 MS.gene069555:intron 50.0%
GGGTCGTATTCTTAGGGCAA+AGG + chr4.1:5552533-5552552 MS.gene069555:CDS 50.0%
TCAACTGGCACTACTCGGAA+AGG + chr4.1:5554450-5554469 MS.gene069555:CDS 50.0%
TCACTCAGCAGAAGAGGCTT+TGG - chr4.1:5551333-5551352 None:intergenic 50.0%
TGATGCGGCAGAGAGAGAAA+GGG + chr4.1:5553996-5554015 MS.gene069555:intron 50.0%
TGCAGCTACACTTGTGAGAG+AGG + chr4.1:5551368-5551387 MS.gene069555:intron 50.0%
! AATTACCACGAAAGGGCACG+TGG + chr4.1:5551915-5551934 MS.gene069555:CDS 50.0%
!! TATGGTGCTACAAGGTGCTG+TGG + chr4.1:5552014-5552033 MS.gene069555:intron 50.0%
CAAGAGAGCCCACTGGCAAA+AGG - chr4.1:5552742-5552761 None:intergenic 55.0%
CACTGCAAACTTGGGCTCAC+AGG + chr4.1:5551267-5551286 MS.gene069555:CDS 55.0%
CTGATGCGGCAGAGAGAGAA+AGG + chr4.1:5553995-5554014 MS.gene069555:intron 55.0%
CTTCAGGATAGGATGGCTGG+TGG + chr4.1:5552797-5552816 MS.gene069555:CDS 55.0%
GAAGAGACAGGTGAAGCCTC+TGG + chr4.1:5551557-5551576 MS.gene069555:intron 55.0%
GAATCAGCAAGAGAGCCCAC+TGG - chr4.1:5552749-5552768 None:intergenic 55.0%
GATGCGGCAGAGAGAGAAAG+GGG + chr4.1:5553997-5554016 MS.gene069555:intron 55.0%
GGCAGGGAAAGCTTCAGGAT+AGG + chr4.1:5552786-5552805 MS.gene069555:intron 55.0%
TAGGATGGCTGGTGGCAAAG+AGG + chr4.1:5552805-5552824 MS.gene069555:CDS 55.0%
TATCACCACGTGCCCTTTCG+TGG - chr4.1:5551923-5551942 None:intergenic 55.0%
TCTCTGTAGGAGCTCAGCTC+TGG + chr4.1:5554134-5554153 MS.gene069555:intron 55.0%
! CGTCAAGAAGCACAGCGTCT+GGG + chr4.1:5552513-5552532 MS.gene069555:CDS 55.0%
!! CTGGGTATCGGTCGACACAA+GGG - chr4.1:5552852-5552871 None:intergenic 55.0%
ATCGGGACCACAGTTCGAGC+AGG - chr4.1:5554273-5554292 None:intergenic 60.0%
! AGACTGAGGGAGTGTGGGAG+GGG + chr4.1:5554062-5554081 MS.gene069555:intron 60.0%
! CCTTGTGTCGACCGATACCC+AGG + chr4.1:5552850-5552869 MS.gene069555:CDS 60.0%
! GAGACTGAGGGAGTGTGGGA+GGG + chr4.1:5554061-5554080 MS.gene069555:intron 60.0%
! GCGTCAAGAAGCACAGCGTC+TGG + chr4.1:5552512-5552531 MS.gene069555:CDS 60.0%
! TGAGACTGAGGGAGTGTGGG+AGG + chr4.1:5554060-5554079 MS.gene069555:intron 60.0%
!! CCTGGGTATCGGTCGACACA+AGG - chr4.1:5552853-5552872 None:intergenic 60.0%
!! GAGTGTGGGAGGGGGTATCT+TGG + chr4.1:5554071-5554090 MS.gene069555:intron 60.0%
! GACTGAGGGAGTGTGGGAGG+GGG + chr4.1:5554063-5554082 MS.gene069555:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 5551234 5554710 5551234 ID=MS.gene069555
chr4.1 mRNA 5551234 5554710 5551234 ID=MS.gene069555.t1;Parent=MS.gene069555
chr4.1 exon 5551234 5551288 5551234 ID=MS.gene069555.t1.exon1;Parent=MS.gene069555.t1
chr4.1 CDS 5551234 5551288 5551234 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5551373 5551566 5551373 ID=MS.gene069555.t1.exon2;Parent=MS.gene069555.t1
chr4.1 CDS 5551373 5551566 5551373 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5551864 5552027 5551864 ID=MS.gene069555.t1.exon3;Parent=MS.gene069555.t1
chr4.1 CDS 5551864 5552027 5551864 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5552116 5552188 5552116 ID=MS.gene069555.t1.exon4;Parent=MS.gene069555.t1
chr4.1 CDS 5552116 5552188 5552116 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5552441 5552554 5552441 ID=MS.gene069555.t1.exon5;Parent=MS.gene069555.t1
chr4.1 CDS 5552441 5552554 5552441 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5552791 5552871 5552791 ID=MS.gene069555.t1.exon6;Parent=MS.gene069555.t1
chr4.1 CDS 5552791 5552871 5552791 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5552999 5553058 5552999 ID=MS.gene069555.t1.exon7;Parent=MS.gene069555.t1
chr4.1 CDS 5552999 5553058 5552999 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5554388 5554471 5554388 ID=MS.gene069555.t1.exon8;Parent=MS.gene069555.t1
chr4.1 CDS 5554388 5554471 5554388 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
chr4.1 exon 5554543 5554710 5554543 ID=MS.gene069555.t1.exon9;Parent=MS.gene069555.t1
chr4.1 CDS 5554543 5554710 5554543 ID=cds.MS.gene069555.t1;Parent=MS.gene069555.t1
Gene Sequence

>MS.gene069555

ATGTTTCGAAAAGTCATTAGCATCACTAAATCTCACTGCAAACTTGGGCTCACAGGTATGCTGTTATGCACTGGTTTAATAACATCTTGACAATGACCAAAGCCTCTTCTGCTGAGTGAAATAATTGTTAAATTTGCAGCTACACTTGTGAGAGAGGATGAACGTATTACAGATCTGAACTTCCTAATTGGTCCCAAACTGTATGAGGCAAATTGGTTGGATCTTGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAATTTTTCGCTGAGTATCTAAAGAAAGAGAACTCCAAGAAGAGACAGGTGAAGCCTCTGGGAACTATGTAAATCTTTAGTTAAAATTATAAGGAGCATTTGTGGAATTTTGTCATTATTTTCCATGATACATTGCAGTTTCTGTTTAGGTTGTCTTGATTATTAAAAGAACTGAAATATCATTATGAAAATTATTAATTGCTTGAAAAAAATTCCTAGTTCACTTGCTTGAATTCACTCATCTTCATTGATGATCTTCACACATGCGCAAGGCTCTTTATGTGATGAGATGATCTTTACTTGCTTGATTTCACTCATCTTAATTGTTGATCATTACATGTGCAGGCCCTTTATGTGATGAATCCAAATAAATTCCGAGCATGTGAGTTTCTCATAAATTACCACGAAAGGGCACGTGGTGATAAAATTATAGTGTTTGCTGATAATCTTTTTGCTCTCACCGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGGTGCTGTGGACATAAATTGACGTCTTTTGAAGCTGTGTTTTGGGGTTTTCTGTTTTGCATGTTAAGTTCTGATATGCCTTATTTGCAGCCATGTTGAGAGGACAAAAATTCTACAGGCATTCAAAACCAGCAAAGACGTAAATACTGTTTTTCTTTCCAAGGTATCTGTTCCTGTTTTCTTTAGTTTTATTTTGAGGCTTATTTGCTTTACTTGTCAATTTTTCATGAATAGTATATCCTTACGAGTTTCATTAGGTTAGCTAATAATGTGTAGTATTTTTCTATAGCTGTCTGCCTTAGTACTTCTTGTTAATACTATTGATATTGTGGGCTATTCCATGTTAACATCTTTTTTTTATGAAAGAATGTAACAATTGATATCTGATTCCTTGCATCGTTTCTTTTATTCTCAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCACAGCGTCTGGGTCGTATTCTTAGGGCAAAGGTCAGTTTCTAAAGTCTTCTCTCTGTGTTATTATTATTTCCCTGTTGTATGTATGGTAACTTGTTTTTATTGGTGTTCACCATACCCATCCTACATATTGAATTCTAAATTTCATTTGTTTGCTGTGGAAAGTGGGAAGTTCTGCTGCATGATATTTATGTAGTCTACTTGTCTGTCAATAATGCCTTTTGCCAGTGGGCTCTCTTGCTGATTCAAATTCATGAATTAAATGGCAGGGAAAGCTTCAGGATAGGATGGCTGGTGGCAAAGAGGAGTACAATGCATTTTTTTATTCCCTTGTGTCGACCGATACCCAGGTACAGATTTATTTCATGTCAGGCCATATATTATTGATTATTGGATCATGTTGTCACTTGAAAATAATACTTAAACTATCATTCAAGGAGTTTATGGTGTAATGTATTGTGCTGCTTTCGTTTACAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAAGGTTACAGCTTTAAGGTATTTTCTTTCAATTTTCGGCTCACTCCCTATTGCACTTGTGGTAATTTGCCTCAAGATTCACATGAATTTGTACATTTACTTTACTGTGGACCTAATGCTGTCAATGTGTTATTTTTGGGCAAGAATGATTATTTGGGTGCGTTTGTTTTAATTTTTTTAGGGAAAAAAAAGCACTTTTGTCATTTTTTTTTTAGTGTTTGTTTAGGATTTTTAGAAAAATCATTTTATTAAAAAAAATCTATTTTGACTCAAATGAAAACTATTAGGATTAGCTTTTCCCAAAATCTATTTTTTTGAAATACAAGGAGGTAACATATGAACTAGTTAAAAATCATTAAAAAAAAAACACTTTTTTTGGGTAGTAAACAAACAAAATAGCTTCGGATACACATGAACTAGTTTAAAGTCATTTTAAAAAAAATATACTTTTTTTGGGTAGTAAACAAACACAAATAGCTTCGTTTTTTTTTAAAAAAAATTGCTAAAAAAAATCTCTAGATTTTTCTAACACAAAATCTATTTTTTTACGCTAAAACAAACACACCCTTTGTCTAATTTAAAGTAAGTTGGACTAATCCTAGTGAAACAATTTCAATTAGTTATTGCTCTGCTGTGATGCCATAACCTACTTAAAAGAAGTTCCCTTCTTGAAATATACAAAGCAAGTTGTAACTTGTAAGCACCTGTGAATGAGTAAAAGCTTTTATTTGGTGCGGATGTTTACTATAACCAAGTTGCTTGTTTGTTCGAATGAAGTACTCTAGGAAGACATTAGGTTTGTTGAAGGAAATGGAAGAACGAAAGCTAGCGAATGTATTTATGTTCGCCAAATGAGATTGTAGGCTTAAAGGGATAGGTAGAATATCATCTGTCCAAGACCATGTTGTGAGGAATTTATGTTAGGAAAAAATAAGAAGAGGAATGGAAAGAATGCTGATGCGGCAGAGAGAGAAAGGGGCAGATTATCTGTGTACTGAATTCTGTTATATTGAGAAATTTGAGACTGAGGGAGTGTGGGAGGGGGTATCTTGGAAATATCATTTTGGTGTTGGTTATGGGCAGAGAACATTGTTCTCTGTAGGAGCTCAGCTCTGGACAATTTGCCATTCAATCTTCATCCTTCTGTCTTTTAATTGCTACTGTGTCAATCCCGTGCCAAATATTGCATGAAGACAACTTATTTTTAATGCTCAATGGTTTAAAAAAAACCTGCTCGAACTGTGGTCCCGATGCCATGCTTGAGAATTTGAAATTTTTGTTGGCCACCAAAACTATCTTGCCAAGGTCTCAATCTATACATGCTTATAGTTTTTTTATATGTAACAGGTAATTACAAGCTTGCCTCCATCTGATGAAGGATCTCGCTTGCACTATCATCATCTCGATGATCAACTGGCACTACTCGGAAAGGTTTCCATCTGTATCCCTGTTGAATTGGAATTGAGTTGTTGATTGAGAGCTAAATAGCGTTTACCTATCAGGTATTGAATGCTGGTGATGATGCAGTTGGATTAGAGCAACTAGAAGATGATGCAGATGAAATAGCTCTTAAAAGTGCTCGTCGTTCTCAAGGATCGATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTATGTGGAGTACAGGTGTGATATCCTCTTTATTGCCTGA

Protein sequence

>MS.gene069555.t1

MFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLHYHHLDDQLALLGKVLNAGDDAVGLEQLEDDADEIALKSARRSQGSMSAMSGAKGMVYVEYRCDILFIA