Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070194.t1 | XP_003599919.1 | 85.9 | 611 | 12 | 1 | 1 | 611 | 1 | 537 | 9.50E-284 | 985.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070194.t1 | E0CTY1 | 65.5 | 620 | 126 | 5 | 3 | 610 | 1 | 544 | 7.6e-213 | 741.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070194.t1 | G7IZY8 | 85.9 | 611 | 12 | 1 | 1 | 611 | 1 | 537 | 6.9e-284 | 985.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene070194 | 0.800794 | 1.22E-48 | -1.69E-46 |
MS.gene049222 | MS.gene070194 | 0.815866 | 7.42E-52 | -1.69E-46 |
MS.gene049427 | MS.gene070194 | 0.853815 | 1.86E-61 | -1.69E-46 |
MS.gene049615 | MS.gene070194 | 0.827291 | 1.70E-54 | -1.69E-46 |
MS.gene050163 | MS.gene070194 | 0.813348 | 2.68E-51 | -1.69E-46 |
MS.gene050507 | MS.gene070194 | 0.800377 | 1.48E-48 | -1.69E-46 |
MS.gene050518 | MS.gene070194 | 0.820351 | 7.18E-53 | -1.69E-46 |
MS.gene050538 | MS.gene070194 | 0.831651 | 1.48E-55 | -1.69E-46 |
MS.gene050747 | MS.gene070194 | 0.827322 | 1.67E-54 | -1.69E-46 |
MS.gene050772 | MS.gene070194 | 0.803378 | 3.59E-49 | -1.69E-46 |
MS.gene050783 | MS.gene070194 | 0.820687 | 6.01E-53 | -1.69E-46 |
MS.gene050812 | MS.gene070194 | 0.843383 | 1.45E-58 | -1.69E-46 |
MS.gene050950 | MS.gene070194 | 0.827836 | 1.26E-54 | -1.69E-46 |
MS.gene05100 | MS.gene070194 | 0.809754 | 1.62E-50 | -1.69E-46 |
MS.gene05105 | MS.gene070194 | 0.810071 | 1.38E-50 | -1.69E-46 |
MS.gene051387 | MS.gene070194 | 0.849982 | 2.28E-60 | -1.69E-46 |
MS.gene051666 | MS.gene070194 | 0.813105 | 3.03E-51 | -1.69E-46 |
MS.gene052484 | MS.gene070194 | 0.807071 | 6.04E-50 | -1.69E-46 |
MS.gene052485 | MS.gene070194 | 0.819426 | 1.17E-52 | -1.69E-46 |
MS.gene053107 | MS.gene070194 | 0.865032 | 7.93E-65 | -1.69E-46 |
MS.gene053207 | MS.gene070194 | 0.803324 | 3.68E-49 | -1.69E-46 |
MS.gene053213 | MS.gene070194 | 0.822628 | 2.14E-53 | -1.69E-46 |
MS.gene053286 | MS.gene070194 | 0.81478 | 1.29E-51 | -1.69E-46 |
MS.gene053322 | MS.gene070194 | 0.804131 | 2.50E-49 | -1.69E-46 |
MS.gene053574 | MS.gene070194 | 0.811919 | 5.50E-51 | -1.69E-46 |
MS.gene053626 | MS.gene070194 | 0.802666 | 5.04E-49 | -1.69E-46 |
MS.gene055412 | MS.gene070194 | 0.807443 | 5.04E-50 | -1.69E-46 |
MS.gene055499 | MS.gene070194 | 0.808176 | 3.52E-50 | -1.69E-46 |
MS.gene055647 | MS.gene070194 | 0.808943 | 2.42E-50 | -1.69E-46 |
MS.gene056040 | MS.gene070194 | 0.80936 | 1.97E-50 | -1.69E-46 |
MS.gene056407 | MS.gene070194 | 0.814408 | 1.56E-51 | -1.69E-46 |
MS.gene057011 | MS.gene070194 | 0.842378 | 2.68E-58 | -1.69E-46 |
MS.gene057129 | MS.gene070194 | 0.8153 | 9.92E-52 | -1.69E-46 |
MS.gene057146 | MS.gene070194 | 0.814949 | 1.19E-51 | -1.69E-46 |
MS.gene057331 | MS.gene070194 | 0.803944 | 2.74E-49 | -1.69E-46 |
MS.gene057416 | MS.gene070194 | 0.823314 | 1.48E-53 | -1.69E-46 |
MS.gene057831 | MS.gene070194 | 0.827981 | 1.16E-54 | -1.69E-46 |
MS.gene058019 | MS.gene070194 | 0.835288 | 1.83E-56 | -1.69E-46 |
MS.gene058130 | MS.gene070194 | 0.803614 | 3.20E-49 | -1.69E-46 |
MS.gene058293 | MS.gene070194 | 0.810774 | 9.75E-51 | -1.69E-46 |
MS.gene058660 | MS.gene070194 | 0.82036 | 7.15E-53 | -1.69E-46 |
MS.gene05883 | MS.gene070194 | 0.819167 | 1.34E-52 | -1.69E-46 |
MS.gene05934 | MS.gene070194 | 0.808384 | 3.18E-50 | -1.69E-46 |
MS.gene059536 | MS.gene070194 | 0.814109 | 1.82E-51 | -1.69E-46 |
MS.gene059688 | MS.gene070194 | 0.806425 | 8.28E-50 | -1.69E-46 |
MS.gene059960 | MS.gene070194 | 0.853583 | 2.17E-61 | -1.69E-46 |
MS.gene06092 | MS.gene070194 | 0.83034 | 3.10E-55 | -1.69E-46 |
MS.gene061200 | MS.gene070194 | 0.85895 | 5.79E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064795 | MS.gene070194 | PPI |
MS.gene014383 | MS.gene070194 | PPI |
MS.gene53517 | MS.gene070194 | PPI |
MS.gene69362 | MS.gene070194 | PPI |
MS.gene070194 | MS.gene073888 | PPI |
MS.gene070194 | MS.gene053443 | PPI |
MS.gene070194 | MS.gene52807 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070194.t1 | MTR_3g048950 | 98.031 | 508 | 10 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1009 |
MS.gene070194.t1 | MTR_2g010180 | 33.949 | 433 | 243 | 9 | 90 | 511 | 179 | 579 | 6.99e-45 | 169 |
MS.gene070194.t1 | MTR_2g010180 | 33.700 | 454 | 247 | 10 | 90 | 521 | 179 | 600 | 7.05e-45 | 169 |
MS.gene070194.t1 | MTR_2g010180 | 33.700 | 454 | 247 | 10 | 90 | 521 | 193 | 614 | 8.71e-45 | 169 |
MS.gene070194.t1 | MTR_3g096980 | 31.696 | 448 | 245 | 13 | 78 | 508 | 174 | 577 | 3.99e-44 | 167 |
MS.gene070194.t1 | MTR_8g094740 | 31.279 | 438 | 247 | 11 | 85 | 508 | 181 | 578 | 2.19e-40 | 156 |
MS.gene070194.t1 | MTR_8g094740 | 30.867 | 392 | 230 | 9 | 85 | 472 | 181 | 535 | 9.31e-34 | 135 |
MS.gene070194.t1 | MTR_8g080890 | 31.677 | 322 | 198 | 6 | 1 | 316 | 13 | 318 | 1.28e-33 | 135 |
MS.gene070194.t1 | MTR_8g080870 | 33.704 | 270 | 168 | 5 | 46 | 308 | 15 | 280 | 2.79e-31 | 127 |
MS.gene070194.t1 | MTR_8g080840 | 29.254 | 335 | 218 | 6 | 46 | 364 | 44 | 375 | 1.02e-30 | 126 |
MS.gene070194.t1 | MTR_4g074030 | 33.094 | 278 | 177 | 5 | 37 | 308 | 29 | 303 | 2.82e-30 | 125 |
MS.gene070194.t1 | MTR_8g097220 | 30.065 | 306 | 196 | 6 | 17 | 316 | 21 | 314 | 6.66e-30 | 124 |
MS.gene070194.t1 | MTR_8g080880 | 30.565 | 301 | 198 | 5 | 23 | 316 | 21 | 317 | 8.02e-30 | 124 |
MS.gene070194.t1 | MTR_8g095600 | 31.020 | 245 | 153 | 4 | 43 | 282 | 163 | 396 | 3.73e-29 | 122 |
MS.gene070194.t1 | MTR_8g095600 | 31.020 | 245 | 153 | 4 | 43 | 282 | 179 | 412 | 1.14e-28 | 121 |
MS.gene070194.t1 | MTR_8g095600 | 31.020 | 245 | 153 | 4 | 43 | 282 | 163 | 396 | 1.15e-28 | 121 |
MS.gene070194.t1 | MTR_8g095600 | 31.020 | 245 | 153 | 4 | 43 | 282 | 163 | 396 | 1.41e-28 | 120 |
MS.gene070194.t1 | MTR_1g082750 | 46.429 | 112 | 60 | 0 | 141 | 252 | 63 | 174 | 2.20e-22 | 100 |
MS.gene070194.t1 | MTR_4g094205 | 46.602 | 103 | 55 | 0 | 151 | 253 | 119 | 221 | 2.11e-19 | 92.8 |
MS.gene070194.t1 | MTR_8g107280 | 41.441 | 111 | 65 | 0 | 143 | 253 | 101 | 211 | 6.26e-12 | 68.9 |
MS.gene070194.t1 | MTR_8g107280 | 41.441 | 111 | 65 | 0 | 143 | 253 | 101 | 211 | 7.29e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070194.t1 | AT3G25660 | 74.364 | 511 | 124 | 3 | 3 | 508 | 1 | 509 | 0.0 | 738 |
MS.gene070194.t1 | AT5G64440 | 28.632 | 475 | 289 | 11 | 48 | 508 | 139 | 577 | 2.16e-43 | 164 |
MS.gene070194.t1 | AT5G07360 | 29.876 | 241 | 155 | 3 | 43 | 278 | 205 | 436 | 1.35e-26 | 115 |
MS.gene070194.t1 | AT5G07360 | 29.876 | 241 | 155 | 3 | 43 | 278 | 205 | 436 | 1.35e-26 | 115 |
MS.gene070194.t1 | AT5G07360 | 29.876 | 241 | 148 | 4 | 43 | 278 | 205 | 429 | 4.02e-25 | 110 |
MS.gene070194.t1 | AT4G34880 | 27.160 | 486 | 292 | 14 | 43 | 508 | 45 | 488 | 1.58e-24 | 108 |
MS.gene070194.t1 | AT1G08980 | 45.299 | 117 | 64 | 0 | 141 | 257 | 64 | 180 | 1.09e-21 | 98.6 |
MS.gene070194.t1 | AT5G09420 | 36.196 | 163 | 98 | 3 | 151 | 313 | 117 | 273 | 5.64e-19 | 91.3 |
MS.gene070194.t1 | AT3G17970 | 41.905 | 105 | 61 | 0 | 149 | 253 | 102 | 206 | 9.12e-16 | 81.3 |
MS.gene070194.t1 | AT3G17970 | 41.905 | 105 | 61 | 0 | 149 | 253 | 102 | 206 | 1.05e-15 | 80.9 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGAAGCTTCTGCATTTC+AGG | 0.094048 | 3.2:-41711302 | MS.gene070194:intron |
CCTTCAGCTGCTTATAAAAT+TGG | 0.189323 | 3.2:-41702038 | MS.gene070194:intron |
CCAACCCGTGGGATGTTTCT+AGG | 0.236054 | 3.2:-41703776 | MS.gene070194:CDS |
GGTTCATCGGTTGCTGATGC+TGG | 0.274044 | 3.2:-41703552 | MS.gene070194:CDS |
CTTGAAGCTATTCCTTATAA+TGG | 0.275796 | 3.2:+41702103 | None:intergenic |
CTTGATGCCATTGGCTGCTT+TGG | 0.287138 | 3.2:-41703573 | MS.gene070194:CDS |
GGGATTGTTCGGAGGGGAGG+TGG | 0.319324 | 3.2:+41711569 | None:intergenic |
TACAAATAAGAGGAAGTAAG+AGG | 0.327116 | 3.2:+41699356 | None:intergenic |
TGTTGTTGGGAAGACGAATA+TGG | 0.330954 | 3.2:-41711347 | MS.gene070194:CDS |
GAGGAAGTTGGTCCTCTTGC+TGG | 0.334338 | 3.2:-41711502 | MS.gene070194:CDS |
CCATGTGGATTTATTGAGAA+TGG | 0.335224 | 3.2:-41701049 | MS.gene070194:CDS |
TTCTTATAATACGAGATATC+AGG | 0.337827 | 3.2:+41699457 | None:intergenic |
TGTCTCGCTATGATGGTATT+AGG | 0.343270 | 3.2:-41702873 | MS.gene070194:intron |
TGGTGTTCTTGTTGCTGTTA+AGG | 0.344765 | 3.2:-41711482 | MS.gene070194:CDS |
TATGGGCGCGTCTCAAGATT+TGG | 0.346456 | 3.2:-41703618 | MS.gene070194:CDS |
CCCTTGAAAGGACTGAGAAT+TGG | 0.350069 | 3.2:-41703196 | MS.gene070194:CDS |
CCTGTTGGCCTGCAAATGAT+TGG | 0.354266 | 3.2:-41701013 | MS.gene070194:CDS |
TGGTGAGAAGGGAGTGGCGG+AGG | 0.367615 | 3.2:+41711671 | None:intergenic |
AGAGAGTGGAACGTGGAGTT+TGG | 0.372324 | 3.2:+41711785 | None:intergenic |
ATTCTCCTCCATGCAATTGC+TGG | 0.372958 | 3.2:-41703528 | MS.gene070194:CDS |
GAAGGGAGTGGCGGAGGGTG+AGG | 0.374672 | 3.2:+41711677 | None:intergenic |
TTGTACTAACAGTTACTAAT+AGG | 0.381448 | 3.2:-41699645 | MS.gene070194:intron |
GGTGGAGGAAGGAACGGAGG+TGG | 0.388259 | 3.2:+41711587 | None:intergenic |
ATGCTGCACCAATCATTTGC+AGG | 0.388800 | 3.2:+41701005 | None:intergenic |
AAGACGAATATGGATGAGTT+TGG | 0.396095 | 3.2:-41711337 | MS.gene070194:CDS |
ATTGTTCGGAGGGGAGGTGG+AGG | 0.399809 | 3.2:+41711572 | None:intergenic |
GGGGTGCGGTTGTAGGTTGG+GGG | 0.400004 | 3.2:+41711710 | None:intergenic |
CATTGGCTGCTTTGGTTCAT+CGG | 0.403088 | 3.2:-41703565 | MS.gene070194:CDS |
AACAGGTGAGAACCATTATA+AGG | 0.404504 | 3.2:-41702115 | MS.gene070194:intron |
AATTGGGTGGGATTGTTGTT+GGG | 0.407014 | 3.2:-41711360 | MS.gene070194:CDS |
GGAGGGATTGTTCGGAGGGG+AGG | 0.408320 | 3.2:+41711566 | None:intergenic |
CGGAGAGGGTGTTGGTGAGA+AGG | 0.409143 | 3.2:+41711659 | None:intergenic |
GAGGGTGAGGATTTGAGAGG+GGG | 0.409941 | 3.2:+41711690 | None:intergenic |
GAATTGGGTGGGATTGTTGT+TGG | 0.410650 | 3.2:-41711361 | MS.gene070194:CDS |
ACCAATTCTCAGTCCTTTCA+AGG | 0.410994 | 3.2:+41703195 | None:intergenic |
GGAGAGGGTGTTGGTGAGAA+GGG | 0.413113 | 3.2:+41711660 | None:intergenic |
CGGTTAGACGGAGGCGGGTG+AGG | 0.413943 | 3.2:+41711614 | None:intergenic |
GGAGGCGGGTGAGGTGGGAT+TGG | 0.414605 | 3.2:+41711623 | None:intergenic |
GTAGGTTTGAAGCCAACATA+TGG | 0.418336 | 3.2:-41703636 | MS.gene070194:CDS |
AACTGCAGCTGCCGATCCTC+CGG | 0.421581 | 3.2:+41703737 | None:intergenic |
CCAATCATTTGCAGGCCAAC+AGG | 0.424765 | 3.2:+41701013 | None:intergenic |
GGAGGTGGAGGAAGGAACGG+AGG | 0.426202 | 3.2:+41711584 | None:intergenic |
GATGAGGTCGGTGGCGGAGA+GGG | 0.429116 | 3.2:+41711645 | None:intergenic |
GTGGAGGAAGGAACGGAGGT+GGG | 0.435354 | 3.2:+41711588 | None:intergenic |
GAATCCCGAGCCAAAGGGTT+AGG | 0.438985 | 3.2:-41702666 | MS.gene070194:CDS |
GCAACATCTTTCTGTGATTG+AGG | 0.439556 | 3.2:+41699420 | None:intergenic |
GATCCTCCGGATGATCCTCC+TGG | 0.440465 | 3.2:+41703750 | None:intergenic |
GAAGGAACGGAGGTGGGGTT+CGG | 0.441041 | 3.2:+41711594 | None:intergenic |
GGGGTTCGGTTAGACGGAGG+CGG | 0.443227 | 3.2:+41711608 | None:intergenic |
TCAAAATGAGATAGAAAGTT+GGG | 0.443630 | 3.2:+41703244 | None:intergenic |
CTAGCTCATCAGCATAAACT+TGG | 0.445051 | 3.2:+41702703 | None:intergenic |
GGGGTGTGTGAGAGTAGCTT+GGG | 0.445406 | 3.2:+41711729 | None:intergenic |
TCAACGCCATCAGCTATGAT+TGG | 0.451573 | 3.2:+41698466 | None:intergenic |
CGAGGATACTTGAGGGTTAT+CGG | 0.452203 | 3.2:-41711420 | MS.gene070194:CDS |
AAGTATATAGTCCTTTGGTT+GGG | 0.455412 | 3.2:+41699382 | None:intergenic |
GGTGAGGAGAGTTAAGGAAT+TGG | 0.455842 | 3.2:-41711377 | MS.gene070194:CDS |
GGGAGAAGTATATAGTCCTT+TGG | 0.460371 | 3.2:+41699377 | None:intergenic |
CAACATCTTTCTGTGATTGA+GGG | 0.461058 | 3.2:+41699421 | None:intergenic |
CTGAGCGAGGAGGGATTGTT+CGG | 0.461679 | 3.2:+41711558 | None:intergenic |
GAAGTATATAGTCCTTTGGT+TGG | 0.462284 | 3.2:+41699381 | None:intergenic |
GGGACATATGCCCTTTCAGC+TGG | 0.466577 | 3.2:-41702468 | MS.gene070194:CDS |
TAGGTAAATGTCAACCTAGC+TGG | 0.467203 | 3.2:-41701091 | MS.gene070194:CDS |
GTGAGGAGAGTTAAGGAATT+GGG | 0.468120 | 3.2:-41711376 | MS.gene070194:CDS |
AGAACCTAACCCTTTGGCTC+GGG | 0.470303 | 3.2:+41702662 | None:intergenic |
AGTAGCTTGGGTGGTGATGG+TGG | 0.470306 | 3.2:+41711741 | None:intergenic |
TACCTCAGAACCTAACCCTT+TGG | 0.473794 | 3.2:+41702656 | None:intergenic |
GTCAAAATGAGATAGAAAGT+TGG | 0.475595 | 3.2:+41703243 | None:intergenic |
GTATCGTTGGGAAGTGATAC+TGG | 0.476953 | 3.2:-41703696 | MS.gene070194:CDS |
GAGAGTAGCTTGGGTGGTGA+TGG | 0.480412 | 3.2:+41711738 | None:intergenic |
GTCGGTGGCGGAGAGGGTGT+TGG | 0.480489 | 3.2:+41711651 | None:intergenic |
TCCAACTTGTCTCGCTATGA+TGG | 0.480589 | 3.2:-41702880 | MS.gene070194:CDS |
CGGCAGCTGCAGTTTCTGCC+AGG | 0.482175 | 3.2:-41703728 | MS.gene070194:CDS |
GGAGGGTGAGGATTTGAGAG+GGG | 0.482570 | 3.2:+41711689 | None:intergenic |
CTCACCGCCGTCGCATCAAA+CGG | 0.483630 | 3.2:+41711394 | None:intergenic |
GATGAGCTAGACTCTCTCTA+TGG | 0.484664 | 3.2:-41702690 | MS.gene070194:CDS |
TGGGTGGTGATGGTGGATGA+TGG | 0.484855 | 3.2:+41711748 | None:intergenic |
TGGTGATGGTGGATGATGGA+AGG | 0.487720 | 3.2:+41711752 | None:intergenic |
TGCTGGCAACCCAAGTGAAA+AGG | 0.489336 | 3.2:+41702933 | None:intergenic |
CAACGATACAACACACTGCC+TGG | 0.490331 | 3.2:+41703710 | None:intergenic |
TAGACGGAGGCGGGTGAGGT+GGG | 0.492136 | 3.2:+41711618 | None:intergenic |
GTTCATCGGTTGCTGATGCT+GGG | 0.492997 | 3.2:-41703551 | MS.gene070194:CDS |
AACTATTCTCCTTGTCCTCA+AGG | 0.494067 | 3.2:-41699600 | MS.gene070194:CDS |
TGGGATGTTTCTAGGGTGCC+AGG | 0.494163 | 3.2:-41703768 | MS.gene070194:CDS |
GAATATGGATGAGTTTGGTA+TGG | 0.494732 | 3.2:-41711332 | MS.gene070194:CDS |
ATTGAAGATGGTGTTGATGC+TGG | 0.494844 | 3.2:-41703157 | MS.gene070194:CDS |
GGGTGAGGTGGGATTGGATG+AGG | 0.497563 | 3.2:+41711629 | None:intergenic |
TAAGCAGCTGAAGGAGCTGC+AGG | 0.503173 | 3.2:+41702047 | None:intergenic |
GGATTGGATGAGGTCGGTGG+CGG | 0.503997 | 3.2:+41711639 | None:intergenic |
GGGTTCGGTTAGACGGAGGC+GGG | 0.504972 | 3.2:+41711609 | None:intergenic |
CGAACAATCCCTCCTCGCTC+AGG | 0.506581 | 3.2:-41711557 | MS.gene070194:CDS |
CCGTAGAATCGCTGCGGGCG+AGG | 0.507124 | 3.2:-41711521 | MS.gene070194:CDS |
GGGTGTTGGTGAGAAGGGAG+TGG | 0.507696 | 3.2:+41711665 | None:intergenic |
GACAAGGAGAATAGTTGTGA+GGG | 0.508316 | 3.2:+41699607 | None:intergenic |
TCGGCCGCCGTTTGATGCGA+CGG | 0.509581 | 3.2:-41711401 | MS.gene070194:CDS |
CATTATAAGGAATAGCTTCA+AGG | 0.510073 | 3.2:-41702102 | MS.gene070194:CDS |
GGTGAGAAGGGAGTGGCGGA+GGG | 0.510097 | 3.2:+41711672 | None:intergenic |
GCGGAGGGTGAGGATTTGAG+AGG | 0.510822 | 3.2:+41711687 | None:intergenic |
CCTCGCCCGCAGCGATTCTA+CGG | 0.510908 | 3.2:+41711521 | None:intergenic |
CCTAGCTGGACTACCTGCCT+TGG | 0.511239 | 3.2:-41701077 | MS.gene070194:CDS |
TTAGACGGAGGCGGGTGAGG+TGG | 0.512579 | 3.2:+41711617 | None:intergenic |
CAACCCGTGGGATGTTTCTA+GGG | 0.513746 | 3.2:-41703775 | MS.gene070194:CDS |
ATCATAGTAACCAGCTGAAA+GGG | 0.518202 | 3.2:+41702458 | None:intergenic |
ATTCGTGAAACTATTGAAGA+TGG | 0.519456 | 3.2:-41703169 | MS.gene070194:CDS |
GAATAGCTTCAAGGAAGCGC+TGG | 0.521105 | 3.2:-41702093 | MS.gene070194:CDS |
TTGGAAAGTAAGCCCTTGAA+AGG | 0.521290 | 3.2:-41703208 | MS.gene070194:CDS |
GTGTGTGAGAGTAGCTTGGG+TGG | 0.521382 | 3.2:+41711732 | None:intergenic |
AGGGTGCCAGGAGGATCATC+CGG | 0.523170 | 3.2:-41703756 | MS.gene070194:CDS |
TGTTAAGGATAATATTTGTA+CGG | 0.523699 | 3.2:-41711467 | MS.gene070194:CDS |
TATATAGTCCTTTGGTTGGG+AGG | 0.523949 | 3.2:+41699385 | None:intergenic |
TGGAGGAAGGAACGGAGGTG+GGG | 0.527467 | 3.2:+41711589 | None:intergenic |
CCAATTCTCAGTCCTTTCAA+GGG | 0.528903 | 3.2:+41703196 | None:intergenic |
AGGAGGATCATCCGGAGGAT+CGG | 0.529125 | 3.2:-41703748 | MS.gene070194:CDS |
AGGGGAGGTGGAGGAAGGAA+CGG | 0.529981 | 3.2:+41711581 | None:intergenic |
CAGGCAGTGTGTTGTATCGT+TGG | 0.530074 | 3.2:-41703709 | MS.gene070194:CDS |
ATATTACAAACGAGCGCAGC+AGG | 0.530821 | 3.2:-41702433 | MS.gene070194:intron |
GCTGACATGCCGTCGACTGG+TGG | 0.531775 | 3.2:-41711445 | MS.gene070194:CDS |
CTTGAGACGCGCCCATATGT+TGG | 0.532165 | 3.2:+41703624 | None:intergenic |
CGTCTCAAGATTTGGACTCA+TGG | 0.533310 | 3.2:-41703610 | MS.gene070194:CDS |
GGGAAATCAAGATATCATAT+TGG | 0.533729 | 3.2:+41702069 | None:intergenic |
GTCATGTGCCTGAGCGAGGA+GGG | 0.533744 | 3.2:+41711549 | None:intergenic |
CGGAGGGTGAGGATTTGAGA+GGG | 0.535379 | 3.2:+41711688 | None:intergenic |
ACGGCTGACATGCCGTCGAC+TGG | 0.535541 | 3.2:-41711448 | MS.gene070194:CDS |
ATCGCTGCGGGCGAGGAAGT+TGG | 0.536633 | 3.2:-41711514 | MS.gene070194:CDS |
GGATCGACTGGCCTTCCTGT+TGG | 0.537162 | 3.2:-41701028 | MS.gene070194:CDS |
AAGGGAGAAGCGTGAGAGAG+TGG | 0.537183 | 3.2:+41711771 | None:intergenic |
ACCATCATAGCGAGACAAGT+TGG | 0.538119 | 3.2:+41702879 | None:intergenic |
TGCCGTCGACTGGTGGGTCG+AGG | 0.539238 | 3.2:-41711438 | MS.gene070194:CDS |
CATCATAGTAACCAGCTGAA+AGG | 0.540452 | 3.2:+41702457 | None:intergenic |
GCGAGGAGGGATTGTTCGGA+GGG | 0.542708 | 3.2:+41711562 | None:intergenic |
TATCATGACCAGCAATTGCA+TGG | 0.543365 | 3.2:+41703520 | None:intergenic |
TGTTGGTGAGAAGGGAGTGG+CGG | 0.543948 | 3.2:+41711668 | None:intergenic |
GGTGGGGTTCGGTTAGACGG+AGG | 0.544675 | 3.2:+41711605 | None:intergenic |
TAGGTTTGAAGCCAACATAT+GGG | 0.545372 | 3.2:-41703635 | MS.gene070194:CDS |
CAGAACCTAACCCTTTGGCT+CGG | 0.546221 | 3.2:+41702661 | None:intergenic |
TGGTGGAAGTGTGAGGCAGC+CGG | 0.546383 | 3.2:-41703676 | MS.gene070194:CDS |
GATCCTTTGGCTATGTATGC+TGG | 0.549623 | 3.2:-41701918 | MS.gene070194:CDS |
AATATGGATGAGTTTGGTAT+GGG | 0.549939 | 3.2:-41711331 | MS.gene070194:CDS |
CCACATGGTAAAACCAAGGC+AGG | 0.555507 | 3.2:+41701064 | None:intergenic |
AGCGAGGAGGGATTGTTCGG+AGG | 0.556460 | 3.2:+41711561 | None:intergenic |
TTCGGAGGGGAGGTGGAGGA+AGG | 0.557260 | 3.2:+41711576 | None:intergenic |
GCGTCATCGCTTGATGCCAT+TGG | 0.558040 | 3.2:-41703582 | MS.gene070194:CDS |
TGATGCCACATCAAGTAAGC+AGG | 0.559736 | 3.2:-41703493 | MS.gene070194:intron |
TATGGTGAATCCCGAGCCAA+AGG | 0.561140 | 3.2:-41702672 | MS.gene070194:CDS |
CCGCAGCGATTCTACGGTCG+AGG | 0.563454 | 3.2:+41711527 | None:intergenic |
GATTGGTGCAGCATTTAATG+AGG | 0.564316 | 3.2:-41700996 | MS.gene070194:intron |
TTTATTGAGAATGGATCGAC+TGG | 0.565848 | 3.2:-41701040 | MS.gene070194:CDS |
GGAGGTGGGGTTCGGTTAGA+CGG | 0.566007 | 3.2:+41711602 | None:intergenic |
ACGCCATCAGCTATGATTGG+TGG | 0.566635 | 3.2:+41698469 | None:intergenic |
GACGGCGGTGAGGAGAGTTA+AGG | 0.567286 | 3.2:-41711383 | MS.gene070194:CDS |
CCAAGGCAGGTAGTCCAGCT+AGG | 0.568026 | 3.2:+41701077 | None:intergenic |
AGGCAGTGTGTTGTATCGTT+GGG | 0.568441 | 3.2:-41703708 | MS.gene070194:CDS |
GTTCCACCAATCATAGCTGA+TGG | 0.572843 | 3.2:-41698472 | MS.gene070194:CDS |
CTCGACCGTAGAATCGCTGC+GGG | 0.572932 | 3.2:-41711526 | MS.gene070194:CDS |
AGCCAAAGGGTTAGGTTCTG+AGG | 0.574572 | 3.2:-41702658 | MS.gene070194:intron |
TGGTGGGTCGAGGATACTTG+AGG | 0.574780 | 3.2:-41711428 | MS.gene070194:CDS |
GGTGATGGTGGATGATGGAA+GGG | 0.575534 | 3.2:+41711753 | None:intergenic |
TCACAGAAAGATGTTGCAGA+TGG | 0.576128 | 3.2:-41699414 | MS.gene070194:CDS |
TCGTACCTGCTTACTTGATG+TGG | 0.579354 | 3.2:+41703488 | None:intergenic |
AGGGTGAGGATTTGAGAGGG+GGG | 0.579792 | 3.2:+41711691 | None:intergenic |
TAGGGAGAGCTGCTGAGAGT+GGG | 0.580834 | 3.2:-41698532 | MS.gene070194:CDS |
CGAGGTCATGTGCCTGAGCG+AGG | 0.581516 | 3.2:+41711545 | None:intergenic |
AGATGTCCACCTTGAGGACA+AGG | 0.584253 | 3.2:+41699591 | None:intergenic |
ACAAATAAGAGGAAGTAAGA+GGG | 0.584802 | 3.2:+41699357 | None:intergenic |
AGCAGCTGAAGGAGCTGCAG+GGG | 0.585773 | 3.2:+41702049 | None:intergenic |
CTGAAATGCAGAAGCTTCAG+TGG | 0.585857 | 3.2:+41711303 | None:intergenic |
ACAACACCGCAAAATGATGC+CGG | 0.586556 | 3.2:+41703657 | None:intergenic |
GATATCAGGTGGTTATCGAC+TGG | 0.586606 | 3.2:+41699471 | None:intergenic |
GAGGTGGGATTGGATGAGGT+CGG | 0.587835 | 3.2:+41711633 | None:intergenic |
GGATGAGGTCGGTGGCGGAG+AGG | 0.590602 | 3.2:+41711644 | None:intergenic |
CGATGAACCAAAGCAGCCAA+TGG | 0.591677 | 3.2:+41703566 | None:intergenic |
AGGAGAGTTAAGGAATTGGG+TGG | 0.591948 | 3.2:-41711373 | MS.gene070194:CDS |
GTAGGGAGAGCTGCTGAGAG+TGG | 0.592088 | 3.2:-41698533 | MS.gene070194:intron |
GGTTTGTTCCTCCCAACCAA+AGG | 0.592292 | 3.2:-41699393 | MS.gene070194:CDS |
GTGGGATTGGATGAGGTCGG+TGG | 0.596179 | 3.2:+41711636 | None:intergenic |
GGTGGGTCGAGGATACTTGA+GGG | 0.597676 | 3.2:-41711427 | MS.gene070194:CDS |
AATAGGTGACTGCCAACCCG+TGG | 0.597933 | 3.2:-41703788 | MS.gene070194:intron |
GGAACGTGGAGTTTGGAGTG+TGG | 0.608311 | 3.2:+41711792 | None:intergenic |
ATCCTCGACCCACCAGTCGA+CGG | 0.609093 | 3.2:+41711436 | None:intergenic |
TCATTTGCAGGCCAACAGGA+AGG | 0.610270 | 3.2:+41701017 | None:intergenic |
GCAACAAGAACACCAGCAAG+AGG | 0.610406 | 3.2:+41711490 | None:intergenic |
AAAGCGAGGACATAGTATGC+TGG | 0.610724 | 3.2:+41702916 | None:intergenic |
GGAGAGTTAAGGAATTGGGT+GGG | 0.611941 | 3.2:-41711372 | MS.gene070194:CDS |
AAGCGTGAGAGAGTGGAACG+TGG | 0.618725 | 3.2:+41711778 | None:intergenic |
AAGCAGCTGAAGGAGCTGCA+GGG | 0.619430 | 3.2:+41702048 | None:intergenic |
CCTAGAAACATCCCACGGGT+TGG | 0.621583 | 3.2:+41703776 | None:intergenic |
CGTTTGATGCGACGGCGGTG+AGG | 0.624256 | 3.2:-41711393 | MS.gene070194:CDS |
ATGGTGAATCCCGAGCCAAA+GGG | 0.624972 | 3.2:-41702671 | MS.gene070194:CDS |
GGACAAGGAGAATAGTTGTG+AGG | 0.628757 | 3.2:+41699606 | None:intergenic |
GGCACCCTAGAAACATCCCA+CGG | 0.630241 | 3.2:+41703771 | None:intergenic |
ACAAGGAGAATAGTTGTGAG+GGG | 0.632931 | 3.2:+41699608 | None:intergenic |
CTGACATGCCGTCGACTGGT+GGG | 0.633780 | 3.2:-41711444 | MS.gene070194:CDS |
TTATAATACGAGATATCAGG+TGG | 0.634625 | 3.2:+41699460 | None:intergenic |
ATATGGATGAGTTTGGTATG+GGG | 0.639425 | 3.2:-41711330 | MS.gene070194:CDS |
GGCAACCCAAGTGAAAAGGA+TGG | 0.642277 | 3.2:+41702937 | None:intergenic |
ACCGCCGTCGCATCAAACGG+CGG | 0.647453 | 3.2:+41711397 | None:intergenic |
ATTAGGATGCTCTGTGAACG+AGG | 0.648039 | 3.2:-41703092 | MS.gene070194:intron |
GTTGTGAGGGGTGTCTTGTG+AGG | 0.648782 | 3.2:+41699620 | None:intergenic |
CCATTCTCAATAAATCCACA+TGG | 0.649598 | 3.2:+41701049 | None:intergenic |
TCACCAGCATACATAGCCAA+AGG | 0.651194 | 3.2:+41701915 | None:intergenic |
GGTCATGTGCCTGAGCGAGG+AGG | 0.653457 | 3.2:+41711548 | None:intergenic |
GCCGCCGTTTGATGCGACGG+CGG | 0.654353 | 3.2:-41711398 | MS.gene070194:CDS |
ATTACAAGATGTCCACCTTG+AGG | 0.663927 | 3.2:+41699585 | None:intergenic |
ATAGGTGACTGCCAACCCGT+GGG | 0.663939 | 3.2:-41703787 | MS.gene070194:intron |
AAGATGATTCAGACAAAGCG+AGG | 0.664996 | 3.2:+41702902 | None:intergenic |
GCACCCTAGAAACATCCCAC+GGG | 0.669473 | 3.2:+41703772 | None:intergenic |
AAATCCACATGGTAAAACCA+AGG | 0.672604 | 3.2:+41701060 | None:intergenic |
CGAGGAGGGATTGTTCGGAG+GGG | 0.674905 | 3.2:+41711563 | None:intergenic |
GTGATACTGGTGGAAGTGTG+AGG | 0.689164 | 3.2:-41703683 | MS.gene070194:CDS |
CCTCGACCGTAGAATCGCTG+CGG | 0.693020 | 3.2:-41711527 | MS.gene070194:CDS |
GATGTTTCTAGGGTGCCAGG+AGG | 0.695678 | 3.2:-41703765 | MS.gene070194:CDS |
GTGCCAGGAGGATCATCCGG+AGG | 0.699333 | 3.2:-41703753 | MS.gene070194:CDS |
TATTCTCCTTGTCCTCAAGG+TGG | 0.707331 | 3.2:-41699597 | MS.gene070194:CDS |
CATGACCAGCAATTGCATGG+AGG | 0.725633 | 3.2:+41703523 | None:intergenic |
TCGTTGGGAAGTGATACTGG+TGG | 0.795744 | 3.2:-41703693 | MS.gene070194:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 41698462 | 41711827 | 41698462 | ID=MS.gene070194 |
chr3.2 | mRNA | 41698462 | 41711827 | 41698462 | ID=MS.gene070194.t1;Parent=MS.gene070194 |
chr3.2 | exon | 41711303 | 41711827 | 41711303 | ID=MS.gene070194.t1.exon1;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41711303 | 41711827 | 41711303 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41703494 | 41703805 | 41703494 | ID=MS.gene070194.t1.exon2;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41703494 | 41703805 | 41703494 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41703093 | 41703272 | 41703093 | ID=MS.gene070194.t1.exon3;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41703093 | 41703272 | 41703093 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41702874 | 41702968 | 41702874 | ID=MS.gene070194.t1.exon4;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41702874 | 41702968 | 41702874 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41702659 | 41702734 | 41702659 | ID=MS.gene070194.t1.exon5;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41702659 | 41702734 | 41702659 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41702434 | 41702511 | 41702434 | ID=MS.gene070194.t1.exon6;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41702434 | 41702511 | 41702434 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41702039 | 41702132 | 41702039 | ID=MS.gene070194.t1.exon7;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41702039 | 41702132 | 41702039 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41701905 | 41701954 | 41701905 | ID=MS.gene070194.t1.exon8;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41701905 | 41701954 | 41701905 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41700997 | 41701110 | 41700997 | ID=MS.gene070194.t1.exon9;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41700997 | 41701110 | 41700997 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41699584 | 41699655 | 41699584 | ID=MS.gene070194.t1.exon10;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41699584 | 41699655 | 41699584 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41699359 | 41699508 | 41699359 | ID=MS.gene070194.t1.exon11;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41699359 | 41699508 | 41699359 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
chr3.2 | exon | 41698462 | 41698551 | 41698462 | ID=MS.gene070194.t1.exon12;Parent=MS.gene070194.t1 |
chr3.2 | CDS | 41698462 | 41698551 | 41698462 | ID=cds.MS.gene070194.t1;Parent=MS.gene070194.t1 |
Gene Sequence |
Protein sequence |