AlfalfaGEDB | MS.gene070899

M. sativa cultivar XinJiangDaYe / MS.gene070899

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070899.t1	XP_003613028.1	87.7	138	17	0	1	138	329	466	2.00E-64	255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070899.t1	U5NH37	66.7	129	42	1	10	138	347	474	4.7e-46	185.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070899.t1	G7JWC5	87.7	138	17	0	1	138	329	466	1.4e-64	255.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene070899	0.851547	8.27E-61	-1.69E-46
MS.gene049669	MS.gene070899	0.804783	1.83E-49	-1.69E-46
MS.gene049825	MS.gene070899	0.809671	1.69E-50	-1.69E-46
MS.gene049873	MS.gene070899	0.813399	2.61E-51	-1.69E-46
MS.gene050201	MS.gene070899	0.81339	2.62E-51	-1.69E-46
MS.gene050227	MS.gene070899	0.81244	4.24E-51	-1.69E-46
MS.gene050228	MS.gene070899	0.820614	6.25E-53	-1.69E-46
MS.gene050303	MS.gene070899	0.832013	1.20E-55	-1.69E-46
MS.gene050330	MS.gene070899	-0.83523	1.89E-56	-1.69E-46
MS.gene050558	MS.gene070899	0.824201	9.17E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070899.t1	MTR_5g031860	87.681	138	17	0	1	138	329	466	7.91e-87	261
MS.gene070899.t1	MTR_5g031840	85.507	138	20	0	1	138	321	458	1.23e-84	255
MS.gene070899.t1	MTR_5g031830	84.783	138	21	0	1	138	330	467	3.22e-84	254
MS.gene070899.t1	MTR_5g464810	51.880	133	59	4	8	138	345	474	6.41e-38	134
MS.gene070899.t1	MTR_5g064240	51.880	133	59	4	8	138	345	474	6.41e-38	134
MS.gene070899.t1	MTR_6g014300	47.107	121	63	1	19	138	342	462	2.39e-37	132
MS.gene070899.t1	MTR_0036s0220	50.376	133	61	4	8	138	345	474	9.41e-37	130
MS.gene070899.t1	MTR_6g014270	46.721	122	64	1	18	138	354	475	1.69e-36	130
MS.gene070899.t1	MTR_6g014150	46.721	122	64	1	18	138	352	473	2.60e-36	129
MS.gene070899.t1	MTR_0477s0010	43.307	127	71	1	13	138	187	313	3.69e-36	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070899.t1	AT5G05900	50.820	122	59	1	18	138	323	444	7.36e-38	133
MS.gene070899.t1	AT5G05880	49.180	122	61	1	18	138	324	445	5.88e-36	128
MS.gene070899.t1	AT5G05890	48.361	122	62	1	18	138	328	449	2.14e-35	127
MS.gene070899.t1	AT3G11340	42.754	138	73	2	2	138	309	441	6.25e-35	125
MS.gene070899.t1	AT1G22400	45.600	125	66	2	16	138	354	478	1.50e-33	122
MS.gene070899.t1	AT1G78270	48.413	126	62	3	16	138	352	477	2.00e-33	122
MS.gene070899.t1	AT5G05870	48.760	121	61	1	19	138	331	451	2.73e-33	121
MS.gene070899.t1	AT1G22380	44.800	125	67	2	16	138	353	477	2.77e-33	122
MS.gene070899.t1	AT3G46660	45.082	122	66	1	18	138	331	452	3.52e-33	121
MS.gene070899.t1	AT5G38010	45.082	122	66	1	18	138	329	450	2.19e-32	119

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Find 37 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAAGGGATGATTGT+GGG	0.472351	5.4:+21695490	MS.gene070899:CDS
AAATAAGGCCAACATATCAT+AGG	0.459700	5.4:-21695613	None:intergenic
AAGAGAAAGGGATGATTGTG+GGG	0.603887	5.4:+21695491	MS.gene070899:CDS
AAGATCTGCTATTGAAATGG+CGG	0.566824	5.4:+21695771	MS.gene070899:CDS
AAGGGACTACTAAAGAGAAA+GGG	0.595105	5.4:+21695479	MS.gene070899:CDS
ACCATTAGGACTTACACTCT+TGG	0.484150	5.4:-21695803	None:intergenic
ACTTTGGAGAGTGTGATTTG+TGG	0.454735	5.4:+21695586	MS.gene070899:CDS
AGAAAGGGATGATTGTGGGG+TGG	0.586735	5.4:+21695494	MS.gene070899:CDS
AGGACTATTGAAGGAGCTTG+AGG	0.572112	5.4:+21695456	MS.gene070899:CDS
ATATGAAGGATGTTTGTGAT+AGG	0.519622	5.4:+21695692	MS.gene070899:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGGCCAACATATCAT+AGG	-	chr5.4:21695616-21695635	None:intergenic	30.0%
ACAAGAAAAAGGACTATTGA+AGG	+	chr5.4:21695447-21695466	MS.gene070899:CDS	30.0%
ATATGAAGGATGTTTGTGAT+AGG	+	chr5.4:21695692-21695711	MS.gene070899:CDS	30.0%
TAGGAATGTTGTTGAGAAAA+TGG	+	chr5.4:21695711-21695730	MS.gene070899:CDS	30.0%
TGATATTATGACGAACAAGA+AGG	+	chr5.4:21695738-21695757	MS.gene070899:CDS	30.0%
TTCAAGATCTGCTATTGAAA+TGG	+	chr5.4:21695768-21695787	MS.gene070899:CDS	30.0%
AAAGAGAAAGGGATGATTGT+GGG	+	chr5.4:21695490-21695509	MS.gene070899:CDS	35.0%
AAGATCTGCTATTGAAATGG+CGG	+	chr5.4:21695771-21695790	MS.gene070899:CDS	35.0%
AAGGGACTACTAAAGAGAAA+GGG	+	chr5.4:21695479-21695498	MS.gene070899:CDS	35.0%
TAAAGAGAAAGGGATGATTG+TGG	+	chr5.4:21695489-21695508	MS.gene070899:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	21695442	21695857	21695442	ID=MS.gene070899
chr5.4	mRNA	21695442	21695857	21695442	ID=MS.gene070899.t1;Parent=MS.gene070899
chr5.4	exon	21695442	21695857	21695442	ID=MS.gene070899.t1.exon1;Parent=MS.gene070899.t1
chr5.4	CDS	21695442	21695857	21695442	ID=cds.MS.gene070899.t1;Parent=MS.gene070899.t1

Gene Sequence

>MS.gene070899

ATGGTACAAGAAAAAGGACTATTGAAGGAGCTTGAGGAAGGGACTACTAAAGAGAAAGGGATGATTGTGGGGTGGGTTCCACAAGAGGAAGTTTTGTCACACAAAGCAATTGGTGCCTTTTTGACACATAGTGGGTGGAACTCTACTTTGGAGAGTGTGATTTGTGGAGTGCCTATGATATGTTGGCCTTATTTTGCTGATCAACAAATTAATAGTAGGTTTGTGAGTGAGGTTTGGAGAATTGGGTTGGATATGAAGGATGTTTGTGATAGGAATGTTGTTGAGAAAATGGTGAATGATATTATGACGAACAAGAAGGAGGAGTTTTCAAGATCTGCTATTGAAATGGCGGATTTGGCTTCCAAGAGTGTAAGTCCTAATGGTTCCTCCTACAACAACCTCCAAAATTTGATTCA

Protein sequence

>MS.gene070899.t1

MVQEKGLLKELEEGTTKEKGMIVGWVPQEEVLSHKAIGAFLTHSGWNSTLESVICGVPMICWPYFADQQINSRFVSEVWRIGLDMKDVCDRNVVEKMVNDIMTNKKEEFSRSAIEMADLASKSVSPNGSSYNNLQNLI