Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050043.t1 | XP_003618715.1 | 84 | 318 | 33 | 1 | 1 | 300 | 167 | 484 | 5.30E-118 | 434.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050043.t1 | F4I2H7 | 25.2 | 206 | 95 | 1 | 132 | 278 | 526 | 731 | 8.2e-11 | 69.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050043.t1 | G7KMP3 | 84.0 | 318 | 33 | 1 | 1 | 300 | 167 | 484 | 3.8e-118 | 434.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene050043 | 0.868857 | 4.78E-66 | -1.69E-46 |
| MS.gene050029 | MS.gene050043 | 0.912047 | 3.04E-83 | -1.69E-46 |
| MS.gene050031 | MS.gene050043 | 0.915087 | 8.93E-85 | -1.69E-46 |
| MS.gene050043 | MS.gene052519 | 0.80437 | 2.23E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene05415 | 0.805011 | 1.64E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene058037 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene066335 | 0.831214 | 1.89E-55 | -1.69E-46 |
| MS.gene050043 | MS.gene067208 | 0.814696 | 1.35E-51 | -1.69E-46 |
| MS.gene050043 | MS.gene070582 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene071342 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene050043 | MS.gene072067 | 0.813565 | 2.40E-51 | -1.69E-46 |
| MS.gene050043 | MS.gene072915 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene07394 | 0.806572 | 7.71E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene07815 | 0.803368 | 3.60E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene09417 | 0.806956 | 6.40E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene31855 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene050043 | MS.gene45507 | 0.808736 | 2.67E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene47552 | 0.807574 | 4.73E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene50571 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene050043 | MS.gene50865 | 0.802394 | 5.73E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene50875 | 0.810014 | 1.42E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene58638 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene68824 | 0.832801 | 7.68E-56 | -1.69E-46 |
| MS.gene050043 | MS.gene68826 | 0.824792 | 6.66E-54 | -1.69E-46 |
| MS.gene050043 | MS.gene68999 | 0.808284 | 3.34E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene75963 | 0.806473 | 8.09E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene76148 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene78362 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene050043 | MS.gene79568 | 0.808275 | 3.36E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene84994 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene050043 | MS.gene90651 | 0.817239 | 3.66E-52 | -1.69E-46 |
| MS.gene050043 | MS.gene97534 | 0.810383 | 1.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050043.t1 | MTR_6g015010 | 86.164 | 318 | 26 | 1 | 1 | 300 | 167 | 484 | 0.0 | 516 |
| MS.gene050043.t1 | MTR_7g013070 | 55.068 | 296 | 111 | 7 | 11 | 300 | 177 | 456 | 3.33e-92 | 281 |
| MS.gene050043.t1 | MTR_3g064800 | 52.577 | 97 | 44 | 1 | 182 | 278 | 49 | 143 | 2.74e-26 | 102 |
| MS.gene050043.t1 | MTR_3g064800 | 52.577 | 97 | 44 | 1 | 182 | 278 | 19 | 113 | 3.23e-26 | 101 |
| MS.gene050043.t1 | MTR_3g064800 | 52.577 | 97 | 44 | 1 | 182 | 278 | 31 | 125 | 3.37e-26 | 101 |
| MS.gene050043.t1 | MTR_4g078565 | 25.943 | 212 | 97 | 4 | 126 | 278 | 518 | 728 | 6.08e-13 | 69.7 |
| MS.gene050043.t1 | MTR_4g078565 | 25.943 | 212 | 97 | 4 | 126 | 278 | 511 | 721 | 6.23e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050043.t1 | AT5G15510 | 58.632 | 307 | 118 | 4 | 1 | 300 | 186 | 490 | 2.43e-112 | 334 |
| MS.gene050043.t1 | AT3G01015 | 57.432 | 296 | 112 | 3 | 1 | 285 | 173 | 465 | 1.17e-102 | 309 |
| MS.gene050043.t1 | AT5G15510 | 60.370 | 270 | 98 | 4 | 1 | 263 | 186 | 453 | 9.84e-99 | 298 |
| MS.gene050043.t1 | AT5G15510 | 60.370 | 270 | 98 | 4 | 1 | 263 | 186 | 453 | 9.84e-99 | 298 |
| MS.gene050043.t1 | AT5G15510 | 60.370 | 270 | 98 | 4 | 1 | 263 | 186 | 453 | 5.83e-98 | 298 |
| MS.gene050043.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 180 | 276 | 36 | 132 | 3.23e-27 | 104 |
| MS.gene050043.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 180 | 276 | 56 | 152 | 6.22e-27 | 104 |
| MS.gene050043.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 180 | 276 | 23 | 119 | 9.38e-27 | 102 |
| MS.gene050043.t1 | AT1G03780 | 26.214 | 206 | 93 | 4 | 132 | 278 | 526 | 731 | 1.48e-13 | 71.2 |
| MS.gene050043.t1 | AT1G03780 | 26.214 | 206 | 93 | 4 | 132 | 278 | 526 | 731 | 1.67e-13 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGTTACTTAGTATAAAA+AGG | 0.150829 | 5.4:-51039551 | MS.gene050043:CDS |
| AGGAATAGTATACCTGAAAA+TGG | 0.240990 | 5.4:-51039603 | MS.gene050043:CDS |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5.4:+51037469 | None:intergenic |
| GAGCAATCTGAAGTTGTTTC+TGG | 0.276694 | 5.4:-51039423 | MS.gene050043:CDS |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 5.4:+51037062 | None:intergenic |
| TGCTAGTTTGTTTACTGCTT+GGG | 0.315351 | 5.4:-51039385 | MS.gene050043:CDS |
| ATGAATGGTCTGTCAAAATA+AGG | 0.316056 | 5.4:+51037451 | None:intergenic |
| TCAACCACTTGATCTTCTTA+TGG | 0.322478 | 5.4:+51037033 | None:intergenic |
| AGAGAATGAGAAGAAGAATA+AGG | 0.338941 | 5.4:-51039502 | MS.gene050043:CDS |
| TGCACCTGATGATCAAATTC+CGG | 0.346673 | 5.4:+51037779 | None:intergenic |
| AGAAGAATAAGGTGATGAAA+TGG | 0.355774 | 5.4:-51039491 | MS.gene050043:CDS |
| CATGGAAGACCTTGTGCAAT+AGG | 0.361306 | 5.4:+51038680 | None:intergenic |
| GCACCTGATGATCAAATTCC+GGG | 0.368237 | 5.4:+51037780 | None:intergenic |
| GAAGAATAAGGTGATGAAAT+GGG | 0.371425 | 5.4:-51039490 | MS.gene050043:CDS |
| TGCTCATCTTCATCCTCAAC+AGG | 0.390012 | 5.4:+51039441 | None:intergenic |
| GTGTGTAGCAGGAACTCTTC+TGG | 0.394499 | 5.4:-51039212 | MS.gene050043:CDS |
| TTGGAATCATCTAGTACTAT+TGG | 0.398723 | 5.4:-51038955 | MS.gene050043:CDS |
| AGAACAACAGAAAAGGGAAT+TGG | 0.400583 | 5.4:-51037656 | MS.gene050043:CDS |
| ATGCTAGTTTGTTTACTGCT+TGG | 0.408757 | 5.4:-51039386 | MS.gene050043:CDS |
| AGGCTTTGTGCTTTCTTTCA+CGG | 0.409057 | 5.4:+51037844 | None:intergenic |
| AGGAAGAGATTAGGAGATTG+AGG | 0.413621 | 5.4:-51037504 | MS.gene050043:CDS |
| CATTACCTCGTTGGAATGAA+TGG | 0.424164 | 5.4:+51037436 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.425787 | 5.4:+51037824 | None:intergenic |
| GGCTTTGTGCTTTCTTTCAC+GGG | 0.443138 | 5.4:+51037845 | None:intergenic |
| TCGCCCGGAATTTGATCATC+AGG | 0.444522 | 5.4:-51037783 | MS.gene050043:intron |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 5.4:+51038883 | None:intergenic |
| GGGATTGTGGAAGTGGAAGA+AGG | 0.460575 | 5.4:-51039365 | MS.gene050043:intron |
| GGAATTGGAAATACAACAAA+AGG | 0.463028 | 5.4:-51037641 | MS.gene050043:intron |
| GGAATAGTATACCTGAAAAT+GGG | 0.472624 | 5.4:-51039602 | MS.gene050043:CDS |
| TTGTTTACTGCTTGGGATTG+TGG | 0.473847 | 5.4:-51039378 | MS.gene050043:CDS |
| TTTGATAGAACAACAGAAAA+GGG | 0.474688 | 5.4:-51037662 | MS.gene050043:CDS |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.480404 | 5.4:-51037513 | MS.gene050043:CDS |
| GTTTGATAGAACAACAGAAA+AGG | 0.481566 | 5.4:-51037663 | MS.gene050043:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5.4:-51037524 | MS.gene050043:intron |
| GAAAGAGAAGAATGAGGATG+AGG | 0.486091 | 5.4:-51039526 | MS.gene050043:CDS |
| GTGATGAAATGGGGATTACA+TGG | 0.497700 | 5.4:-51039480 | MS.gene050043:CDS |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5.4:-51037813 | MS.gene050043:CDS |
| AGAGATTAGGAGATTGAGGA+AGG | 0.500982 | 5.4:-51037500 | MS.gene050043:CDS |
| AGAAGAACAGTTGATGAAGA+AGG | 0.503039 | 5.4:-51038741 | MS.gene050043:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5.4:-51037814 | MS.gene050043:CDS |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.516867 | 5.4:-51038891 | MS.gene050043:CDS |
| TTTGAGGGCAATTGATCGCC+CGG | 0.517154 | 5.4:-51037798 | MS.gene050043:CDS |
| TTGATCAATCATTACCTCGT+TGG | 0.518913 | 5.4:+51037427 | None:intergenic |
| ACTGCTTGGGATTGTGGAAG+TGG | 0.521266 | 5.4:-51039372 | MS.gene050043:CDS |
| AAATGGGAAAGTGATGCATT+TGG | 0.528141 | 5.4:-51039586 | MS.gene050043:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 5.4:+51037053 | None:intergenic |
| GTACTATTGGAGGAAGGAGG+TGG | 0.535222 | 5.4:-51038942 | MS.gene050043:CDS |
| GCAATTTCAACAACCTGTTG+AGG | 0.537406 | 5.4:-51039454 | MS.gene050043:CDS |
| AGAGAGTAATGGAAGAAGCA+AGG | 0.549720 | 5.4:-51039623 | None:intergenic |
| CTATTGCACAAGGTCTTCCA+TGG | 0.553915 | 5.4:-51038679 | MS.gene050043:CDS |
| AAGAATAAGGTGATGAAATG+GGG | 0.564108 | 5.4:-51039489 | MS.gene050043:CDS |
| CACTTGATCTTCTTATGGTG+AGG | 0.567778 | 5.4:+51037038 | None:intergenic |
| GAATCATCTAGTACTATTGG+AGG | 0.568710 | 5.4:-51038952 | MS.gene050043:CDS |
| AAGGGAGAAAGAGAAGAATG+AGG | 0.575728 | 5.4:-51039532 | MS.gene050043:CDS |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5.4:+51037457 | None:intergenic |
| TCAGGTTCATCAGTAGTCCA+TGG | 0.582453 | 5.4:+51038662 | None:intergenic |
| GAAAGTGATGCATTTGGTGA+AGG | 0.605917 | 5.4:-51039580 | MS.gene050043:CDS |
| CATCTAGTACTATTGGAGGA+AGG | 0.619078 | 5.4:-51038948 | MS.gene050043:CDS |
| TTTGTGCTTTCTTTCACGGG+AGG | 0.620777 | 5.4:+51037848 | None:intergenic |
| CTCACCATAAGAAGATCAAG+TGG | 0.629924 | 5.4:-51037037 | MS.gene050043:CDS |
| CTAGTACTATTGGAGGAAGG+AGG | 0.649542 | 5.4:-51038945 | MS.gene050043:CDS |
| TGTAGCAGGAACTCTTCTGG+TGG | 0.669446 | 5.4:-51039209 | MS.gene050043:CDS |
| ATGGACTACTGATGAACCTG+AGG | 0.671596 | 5.4:-51038660 | MS.gene050043:intron |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 5.4:-51038884 | MS.gene050043:intron |
| ATGAGAATACCTATTGCACA+AGG | 0.690231 | 5.4:-51038689 | MS.gene050043:CDS |
| TATTGTAGCAACTAGCAAAG+GGG | 0.731094 | 5.4:-51038773 | MS.gene050043:intron |
| ACAGACCATTCATTCCAACG+AGG | 0.804126 | 5.4:-51037441 | MS.gene050043:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5.4:51038319-51038338 | MS.gene050043:intron | 15.0% |
| !!! | TAATTGATGATACAAATAAT+TGG | - | chr5.4:51037746-51037765 | MS.gene050043:intron | 15.0% |
| !! | AAAACTTTCAGTTTATTTGA+TGG | - | chr5.4:51038278-51038297 | MS.gene050043:intron | 20.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | - | chr5.4:51037576-51037595 | MS.gene050043:intron | 20.0% |
| !! | CAAAAAGAGACAAAAAATAA+TGG | + | chr5.4:51039480-51039499 | None:intergenic | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5.4:51038684-51038703 | MS.gene050043:CDS | 20.0% |
| !!! | CTTTTTGTCTCATTATATTT+TGG | - | chr5.4:51039493-51039512 | MS.gene050043:CDS | 20.0% |
| !!! | TTTGTAATATTTTCTAAGAG+TGG | + | chr5.4:51039217-51039236 | None:intergenic | 20.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | - | chr5.4:51037056-51037075 | MS.gene050043:CDS | 25.0% |
| ! | ATACACACTTTAATTGATCT+CGG | + | chr5.4:51039424-51039443 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5.4:51038458-51038477 | MS.gene050043:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5.4:51038424-51038443 | None:intergenic | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | - | chr5.4:51037057-51037076 | MS.gene050043:CDS | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5.4:51038876-51038895 | None:intergenic | 25.0% |
| ! | TCATTTCTGCAAAATGTTAT+CGG | - | chr5.4:51037527-51037546 | MS.gene050043:intron | 25.0% |
| ! | TGTATTTCCATTTGTGATTA+AGG | - | chr5.4:51037463-51037482 | MS.gene050043:CDS | 25.0% |
| ! | TTAGTGATTCACTATTAACA+AGG | - | chr5.4:51037599-51037618 | MS.gene050043:intron | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5.4:51038877-51038896 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+GGG | - | chr5.4:51038945-51038964 | MS.gene050043:CDS | 25.0% |
| !! | ATTTTGCAATGTTGTGAATT+CGG | - | chr5.4:51039452-51039471 | MS.gene050043:CDS | 25.0% |
| !! | CTTTTAGATAAAGGAAAACA+TGG | + | chr5.4:51039046-51039065 | None:intergenic | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | - | chr5.4:51037791-51037810 | MS.gene050043:CDS | 25.0% |
| !!! | AGTTTCTTCAAATTTTTCAG+TGG | - | chr5.4:51037782-51037801 | MS.gene050043:intron | 25.0% |
| !!! | CTCATTATATTTTGGTTTGA+AGG | - | chr5.4:51039501-51039520 | MS.gene050043:CDS | 25.0% |
| !!! | GTATGTTTTTAACAGTTTCT+TGG | - | chr5.4:51039242-51039261 | MS.gene050043:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5.4:51039402-51039421 | None:intergenic | 25.0% |
| !!! | TGGCATATCATTTTTTGATT+CGG | - | chr5.4:51039262-51039281 | MS.gene050043:intron | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5.4:51039365-51039384 | MS.gene050043:intron | 25.0% |
| AAACATGGCAACTCAAAATT+AGG | + | chr5.4:51039031-51039050 | None:intergenic | 30.0% | |
| AAGAATAAGGTGATGAAATG+GGG | - | chr5.4:51037118-51037137 | MS.gene050043:intron | 30.0% | |
| AGAAGAATAAGGTGATGAAA+TGG | - | chr5.4:51037116-51037135 | MS.gene050043:intron | 30.0% | |
| AGAGAATGAGAAGAAGAATA+AGG | - | chr5.4:51037105-51037124 | MS.gene050043:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5.4:51037996-51038015 | None:intergenic | 30.0% | |
| AGGAATAGTATACCTGAAAA+TGG | - | chr5.4:51037004-51037023 | MS.gene050043:CDS | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5.4:51038140-51038159 | None:intergenic | 30.0% | |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5.4:51039159-51039178 | None:intergenic | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5.4:51038875-51038894 | None:intergenic | 30.0% | |
| CTTTATCTAAAAGTTGACGT+CGG | - | chr5.4:51039053-51039072 | MS.gene050043:intron | 30.0% | |
| GAAGAATAAGGTGATGAAAT+GGG | - | chr5.4:51037117-51037136 | MS.gene050043:intron | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5.4:51038349-51038368 | MS.gene050043:intron | 30.0% | |
| GGAATAGTATACCTGAAAAT+GGG | - | chr5.4:51037005-51037024 | MS.gene050043:CDS | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5.4:51038966-51038985 | MS.gene050043:intron | 30.0% | |
| GTTTGATAGAACAACAGAAA+AGG | - | chr5.4:51038944-51038963 | MS.gene050043:CDS | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5.4:51038019-51038038 | MS.gene050043:intron | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5.4:51039333-51039352 | MS.gene050043:intron | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5.4:51038139-51038158 | None:intergenic | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5.4:51038428-51038447 | MS.gene050043:intron | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5.4:51038153-51038172 | MS.gene050043:intron | 30.0% | |
| TTGGAATCATCTAGTACTAT+TGG | - | chr5.4:51037652-51037671 | MS.gene050043:CDS | 30.0% | |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | + | chr5.4:51039548-51039567 | None:intergenic | 30.0% |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | - | chr5.4:51037633-51037652 | MS.gene050043:intron | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | + | chr5.4:51039539-51039558 | None:intergenic | 30.0% |
| AAATGGGAAAGTGATGCATT+TGG | - | chr5.4:51037021-51037040 | MS.gene050043:CDS | 35.0% | |
| AGAACAACAGAAAAGGGAAT+TGG | - | chr5.4:51038951-51038970 | MS.gene050043:CDS | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5.4:51038552-51038571 | None:intergenic | 35.0% | |
| ATGAGAATACCTATTGCACA+AGG | - | chr5.4:51037918-51037937 | MS.gene050043:intron | 35.0% | |
| ATTTGTGATTAAGGCATGTC+CGG | - | chr5.4:51037472-51037491 | MS.gene050043:CDS | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5.4:51038786-51038805 | None:intergenic | 35.0% | |
| CTATTGTAGCAACTAGCAAA+GGG | - | chr5.4:51037833-51037852 | MS.gene050043:CDS | 35.0% | |
| CTGTAACAGAAGAATGCTAA+TGG | + | chr5.4:51038727-51038746 | None:intergenic | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5.4:51038794-51038813 | MS.gene050043:intron | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | - | chr5.4:51037655-51037674 | MS.gene050043:CDS | 35.0% | |
| GGTATATATTCCCTTACAGT+TGG | - | chr5.4:51039074-51039093 | MS.gene050043:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5.4:51038525-51038544 | None:intergenic | 35.0% | |
| TATTGTAGCAACTAGCAAAG+GGG | - | chr5.4:51037834-51037853 | MS.gene050043:CDS | 35.0% | |
| TCAACCACTTGATCTTCTTA+TGG | + | chr5.4:51039577-51039596 | None:intergenic | 35.0% | |
| TCAATTAGAACGGTACATTG+TGG | - | chr5.4:51038468-51038487 | MS.gene050043:intron | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5.4:51038793-51038812 | MS.gene050043:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5.4:51038906-51038925 | MS.gene050043:CDS | 35.0% | |
| TGGAGTTAATTCAGTTTCAG+TGG | - | chr5.4:51038592-51038611 | MS.gene050043:intron | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5.4:51038526-51038545 | None:intergenic | 35.0% | |
| TTGATCAATCATTACCTCGT+TGG | + | chr5.4:51039183-51039202 | None:intergenic | 35.0% | |
| ! | ATAAATTTTCACGCACTGTC+AGG | - | chr5.4:51038185-51038204 | MS.gene050043:intron | 35.0% |
| ! | CGACGTCAACTTTTAGATAA+AGG | + | chr5.4:51039055-51039074 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5.4:51039003-51039022 | None:intergenic | 35.0% |
| ! | TAAATTTTCACGCACTGTCA+GGG | - | chr5.4:51038186-51038205 | MS.gene050043:intron | 35.0% |
| !! | AGAAGAACAGTTGATGAAGA+AGG | - | chr5.4:51037866-51037885 | MS.gene050043:intron | 35.0% |
| !! | ATGCTAGTTTGTTTACTGCT+TGG | - | chr5.4:51037221-51037240 | MS.gene050043:intron | 35.0% |
| !! | ATTTGGTGAAGGTTTTTGAG+AGG | - | chr5.4:51037038-51037057 | MS.gene050043:CDS | 35.0% |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5.4:51038994-51039013 | None:intergenic | 35.0% |
| !! | TGCTAGTTTGTTTACTGCTT+GGG | - | chr5.4:51037222-51037241 | MS.gene050043:intron | 35.0% |
| AAGGGAGAAAGAGAAGAATG+AGG | - | chr5.4:51037075-51037094 | MS.gene050043:CDS | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5.4:51038563-51038582 | None:intergenic | 40.0% | |
| ACTCCATATCAGCTGACATA+TGG | + | chr5.4:51038578-51038597 | None:intergenic | 40.0% | |
| ACTGATCATGTGTATGACTC+TGG | - | chr5.4:51038236-51038255 | MS.gene050043:intron | 40.0% | |
| AGAGATTAGGAGATTGAGGA+AGG | - | chr5.4:51039107-51039126 | MS.gene050043:intron | 40.0% | |
| AGGAAGAGATTAGGAGATTG+AGG | - | chr5.4:51039103-51039122 | MS.gene050043:intron | 40.0% | |
| ATCAACGTGTTAGTGACATG+CGG | - | chr5.4:51037551-51037570 | MS.gene050043:intron | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | + | chr5.4:51039572-51039591 | None:intergenic | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | - | chr5.4:51037659-51037678 | MS.gene050043:CDS | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5.4:51039310-51039329 | MS.gene050043:intron | 40.0% | |
| CATTACCTCGTTGGAATGAA+TGG | + | chr5.4:51039174-51039193 | None:intergenic | 40.0% | |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5.4:51038156-51038175 | MS.gene050043:intron | 40.0% | |
| CTCACCATAAGAAGATCAAG+TGG | - | chr5.4:51039570-51039589 | MS.gene050043:CDS | 40.0% | |
| GAAAGAGAAGAATGAGGATG+AGG | - | chr5.4:51037081-51037100 | MS.gene050043:CDS | 40.0% | |
| GCAATTTCAACAACCTGTTG+AGG | - | chr5.4:51037153-51037172 | MS.gene050043:intron | 40.0% | |
| GCTATTGTAGCAACTAGCAA+AGG | - | chr5.4:51037832-51037851 | MS.gene050043:CDS | 40.0% | |
| GGACATGCCTTAATCACAAA+TGG | + | chr5.4:51037473-51037492 | None:intergenic | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5.4:51039153-51039172 | None:intergenic | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | - | chr5.4:51037716-51037735 | MS.gene050043:intron | 40.0% | |
| GTGATGAAATGGGGATTACA+TGG | - | chr5.4:51037127-51037146 | MS.gene050043:intron | 40.0% | |
| TATCCTAGCATAACATGGCA+AGG | - | chr5.4:51038433-51038452 | MS.gene050043:intron | 40.0% | |
| TGACCATATGTCAGCTGATA+TGG | - | chr5.4:51038572-51038591 | MS.gene050043:intron | 40.0% | |
| TGAGAAATTGACCTTACCTC+AGG | + | chr5.4:51037966-51037985 | None:intergenic | 40.0% | |
| TGCACCTGATGATCAAATTC+CGG | + | chr5.4:51038831-51038850 | None:intergenic | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | + | chr5.4:51039557-51039576 | None:intergenic | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5.4:51039327-51039346 | None:intergenic | 40.0% | |
| TTGTTTACTGCTTGGGATTG+TGG | - | chr5.4:51037229-51037248 | MS.gene050043:intron | 40.0% | |
| ! | ACAAACACAGAAAGTACACG+AGG | + | chr5.4:51038645-51038664 | None:intergenic | 40.0% |
| ! | AGGCTTTGTGCTTTCTTTCA+CGG | + | chr5.4:51038766-51038785 | None:intergenic | 40.0% |
| ! | CATGATCAGTTGAGAAGTAC+TGG | + | chr5.4:51038226-51038245 | None:intergenic | 40.0% |
| ! | GAAAGTGATGCATTTGGTGA+AGG | - | chr5.4:51037027-51037046 | MS.gene050043:CDS | 40.0% |
| ! | GAGCAATCTGAAGTTGTTTC+TGG | - | chr5.4:51037184-51037203 | MS.gene050043:intron | 40.0% |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5.4:51038106-51038125 | None:intergenic | 40.0% |
| ! | TGCATCACTTTCCCATTTTC+AGG | + | chr5.4:51037019-51037038 | None:intergenic | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5.4:51038128-51038147 | None:intergenic | 40.0% |
| !! | ACGAGGTATTGTGAGCAATA+AGG | + | chr5.4:51038628-51038647 | None:intergenic | 40.0% |
| !! | TGGCTATATTGGTGATGCAT+TGG | - | chr5.4:51037802-51037821 | MS.gene050043:CDS | 40.0% |
| ACAGACCATTCATTCCAACG+AGG | - | chr5.4:51039166-51039185 | MS.gene050043:intron | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | - | chr5.4:51037723-51037742 | MS.gene050043:intron | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5.4:51038121-51038140 | None:intergenic | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5.4:51037930-51037949 | None:intergenic | 45.0% | |
| CTACTGATGAACCTGAGGTA+AGG | - | chr5.4:51037952-51037971 | MS.gene050043:intron | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | - | chr5.4:51037662-51037681 | MS.gene050043:CDS | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5.4:51037928-51037947 | MS.gene050043:intron | 45.0% | |
| GCACCTGATGATCAAATTCC+GGG | + | chr5.4:51038830-51038849 | None:intergenic | 45.0% | |
| TCACATCACATGTGTCGTGT+CGG | + | chr5.4:51037501-51037520 | None:intergenic | 45.0% | |
| TCAGGTTCATCAGTAGTCCA+TGG | + | chr5.4:51037948-51037967 | None:intergenic | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5.4:51039087-51039106 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5.4:51038439-51038458 | None:intergenic | 45.0% | |
| TGCTCATCTTCATCCTCAAC+AGG | + | chr5.4:51037169-51037188 | None:intergenic | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5.4:51039094-51039113 | MS.gene050043:intron | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5.4:51039088-51039107 | None:intergenic | 45.0% | |
| TTTGTGCTTTCTTTCACGGG+AGG | + | chr5.4:51038762-51038781 | None:intergenic | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | + | chr5.4:51037727-51037746 | None:intergenic | 45.0% |
| ! | ATGGACTACTGATGAACCTG+AGG | - | chr5.4:51037947-51037966 | MS.gene050043:intron | 45.0% |
| ! | GGCTTTGTGCTTTCTTTCAC+GGG | + | chr5.4:51038765-51038784 | None:intergenic | 45.0% |
| ! | TTTTGTGCAGTGTGTGTAGC+AGG | - | chr5.4:51037384-51037403 | MS.gene050043:intron | 45.0% |
| ACTGCTTGGGATTGTGGAAG+TGG | - | chr5.4:51037235-51037254 | MS.gene050043:intron | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5.4:51037242-51037261 | MS.gene050043:intron | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | - | chr5.4:51037665-51037684 | MS.gene050043:CDS | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5.4:51037395-51037414 | MS.gene050043:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5.4:51039083-51039102 | MS.gene050043:intron | 50.0% | |
| TCGCCCGGAATTTGATCATC+AGG | - | chr5.4:51038824-51038843 | MS.gene050043:intron | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+TGG | - | chr5.4:51037398-51037417 | MS.gene050043:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCC+CGG | - | chr5.4:51038809-51038828 | MS.gene050043:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5.4:51039141-51039160 | None:intergenic | 50.0% |
| ACATGTGTCGTGTCGGACAC+CGG | + | chr5.4:51037494-51037513 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 51036992 | 51039637 | 51036992 | ID=MS.gene050043 |
| chr5.4 | mRNA | 51036992 | 51039637 | 51036992 | ID=MS.gene050043.t1;Parent=MS.gene050043 |
| chr5.4 | exon | 51039366 | 51039637 | 51039366 | ID=MS.gene050043.t1.exon1;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51039366 | 51039637 | 51039366 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51039190 | 51039235 | 51039190 | ID=MS.gene050043.t1.exon2;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51039190 | 51039235 | 51039190 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51038885 | 51038980 | 51038885 | ID=MS.gene050043.t1.exon3;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51038885 | 51038980 | 51038885 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51038661 | 51038780 | 51038661 | ID=MS.gene050043.t1.exon4;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51038661 | 51038780 | 51038661 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51037784 | 51037882 | 51037784 | ID=MS.gene050043.t1.exon5;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51037784 | 51037882 | 51037784 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51037642 | 51037701 | 51037642 | ID=MS.gene050043.t1.exon6;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51037642 | 51037701 | 51037642 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51037442 | 51037536 | 51037442 | ID=MS.gene050043.t1.exon7;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51037442 | 51037536 | 51037442 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| chr5.4 | exon | 51036992 | 51037106 | 51036992 | ID=MS.gene050043.t1.exon8;Parent=MS.gene050043.t1 |
| chr5.4 | CDS | 51036992 | 51037106 | 51036992 | ID=cds.MS.gene050043.t1;Parent=MS.gene050043.t1 |
| Gene Sequence |
| Protein sequence |
