Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072803.t1 | XP_003611121.1 | 63.5 | 115 | 42 | 0 | 1 | 115 | 1 | 115 | 3.80E-22 | 115.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072803.t1 | G7KDE4 | 63.5 | 115 | 42 | 0 | 1 | 115 | 1 | 115 | 2.7e-22 | 115.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072803 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene072803 | 0.833295 | 5.79E-56 | -1.69E-46 |
| MS.gene04919 | MS.gene072803 | 0.8156 | 8.51E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene072803 | 0.836577 | 8.62E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene072803 | 0.801166 | 1.02E-48 | -1.69E-46 |
| MS.gene049283 | MS.gene072803 | 0.843721 | 1.18E-58 | -1.69E-46 |
| MS.gene049350 | MS.gene072803 | 0.821751 | 3.42E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene072803 | 0.850144 | 2.05E-60 | -1.69E-46 |
| MS.gene049711 | MS.gene072803 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene072803 | 0.826438 | 2.71E-54 | -1.69E-46 |
| MS.gene050414 | MS.gene072803 | 0.846538 | 2.04E-59 | -1.69E-46 |
| MS.gene050646 | MS.gene072803 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene072803 | 0.82329 | 1.50E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene072803 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene072803 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene072803 | 0.827068 | 1.92E-54 | -1.69E-46 |
| MS.gene052342 | MS.gene072803 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene072803 | 0.827557 | 1.46E-54 | -1.69E-46 |
| MS.gene052534 | MS.gene072803 | 0.808283 | 3.34E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene072803 | 0.813577 | 2.39E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene072803 | 0.801288 | 9.66E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene072803 | 0.813641 | 2.31E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene072803 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene072803 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene054178 | MS.gene072803 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene072803 | 0.834164 | 3.51E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene072803 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene072803 | 0.824252 | 8.93E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene072803 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene072803 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene056082 | MS.gene072803 | 0.810846 | 9.41E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene072803 | 0.820039 | 8.47E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene072803 | 0.821115 | 4.79E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene072803 | 0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene072803 | 0.83076 | 2.45E-55 | -1.69E-46 |
| MS.gene058292 | MS.gene072803 | 0.80453 | 2.07E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene072803 | 0.809304 | 2.02E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene072803 | 0.83513 | 2.01E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene072803 | 0.812737 | 3.65E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene072803 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene072803 | 0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene072803 | 0.803483 | 3.41E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene072803 | 0.81225 | 4.66E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene072803 | -0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene072803 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene072803 | 0.802083 | 6.64E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene072803 | 0.818718 | 1.69E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene072803 | 0.824509 | 7.77E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene072803 | 0.834271 | 3.30E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene072803 | 0.844657 | 6.60E-59 | -1.69E-46 |
| MS.gene061160 | MS.gene072803 | 0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene072803 | 0.823031 | 1.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072803.t1 | MTR_5g010590 | 95.215 | 209 | 10 | 0 | 1 | 209 | 1 | 209 | 4.47e-132 | 369 |
| MS.gene072803.t1 | MTR_5g010590 | 94.406 | 143 | 8 | 0 | 1 | 143 | 1 | 143 | 5.03e-80 | 237 |
| MS.gene072803.t1 | MTR_8g097320 | 48.515 | 202 | 97 | 2 | 10 | 209 | 4 | 200 | 3.80e-56 | 177 |
| MS.gene072803.t1 | MTR_8g097320 | 47.317 | 205 | 98 | 3 | 10 | 209 | 4 | 203 | 4.63e-54 | 172 |
| MS.gene072803.t1 | MTR_1g100647 | 57.937 | 126 | 53 | 0 | 82 | 207 | 84 | 209 | 3.87e-45 | 149 |
| MS.gene072803.t1 | MTR_8g031370 | 59.524 | 126 | 51 | 0 | 82 | 207 | 75 | 200 | 5.26e-44 | 146 |
| MS.gene072803.t1 | MTR_7g076730 | 52.756 | 127 | 60 | 0 | 81 | 207 | 7 | 133 | 1.05e-40 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072803.t1 | AT5G23750 | 60.317 | 126 | 50 | 0 | 82 | 207 | 76 | 201 | 5.71e-49 | 159 |
| MS.gene072803.t1 | AT5G23750 | 60.317 | 126 | 50 | 0 | 82 | 207 | 104 | 229 | 6.14e-49 | 159 |
| MS.gene072803.t1 | AT5G23750 | 60.317 | 126 | 50 | 0 | 82 | 207 | 77 | 202 | 1.00e-48 | 158 |
| MS.gene072803.t1 | AT3G48940 | 57.937 | 126 | 53 | 0 | 82 | 207 | 50 | 175 | 1.50e-44 | 146 |
| MS.gene072803.t1 | AT3G61260 | 56.154 | 130 | 57 | 0 | 78 | 207 | 83 | 212 | 7.77e-44 | 146 |
| MS.gene072803.t1 | AT2G45820 | 58.519 | 135 | 56 | 0 | 73 | 207 | 56 | 190 | 3.84e-40 | 135 |
| MS.gene072803.t1 | AT1G63295 | 40.625 | 128 | 73 | 2 | 83 | 207 | 24 | 151 | 8.03e-21 | 85.1 |
| MS.gene072803.t1 | AT1G63295 | 43.243 | 111 | 63 | 0 | 83 | 193 | 64 | 174 | 2.25e-20 | 85.1 |
| MS.gene072803.t1 | AT4G00670 | 37.963 | 108 | 66 | 1 | 101 | 207 | 16 | 123 | 1.46e-17 | 75.9 |
Find 35 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAATCTTCTGTTGGATTA+TGG | 0.203365 | 5.3:+4134496 | MS.gene072803:CDS |
| AAGCATGCAAACAATTTCTT+TGG | 0.279239 | 5.3:-4135738 | None:intergenic |
| AGGGGATCATGATGATAAAA+AGG | 0.323089 | 5.3:+4134185 | MS.gene072803:CDS |
| GCAATCTTCTGTTGGATTAT+GGG | 0.326593 | 5.3:+4134497 | MS.gene072803:CDS |
| AAAAGACAAAGGCAGAAAAT+AGG | 0.344478 | 5.3:+4134383 | MS.gene072803:CDS |
| AGATGATCATGCTGGTAATA+AGG | 0.356783 | 5.3:+4134158 | MS.gene072803:CDS |
| CATGCTGGTAATAAGGAAAC+AGG | 0.363454 | 5.3:+4134165 | MS.gene072803:CDS |
| GGGGAAAGCTCTTCAGGAAC+AGG | 0.393746 | 5.3:-4133338 | None:intergenic |
| GCTTTCCCCTGTTGTGGAAA+AGG | 0.394410 | 5.3:+4133352 | MS.gene072803:CDS |
| ACAACAGGGGAAAGCTCTTC+AGG | 0.423226 | 5.3:-4133344 | None:intergenic |
| ACCACAGCTACAGTCTCTTC+TGG | 0.424564 | 5.3:+4133313 | MS.gene072803:CDS |
| TGGCCTGCTGAGTAGGCTCC+TGG | 0.430478 | 5.3:-4133406 | None:intergenic |
| TGAAGAGCTTTCCCCTGTTG+TGG | 0.460075 | 5.3:+4133346 | MS.gene072803:CDS |
| TACAAGAAGCAATCTTCTGT+TGG | 0.476983 | 5.3:+4134489 | MS.gene072803:CDS |
| AAGCAAGAAATCATCTATAG+AGG | 0.477360 | 5.3:+4134524 | MS.gene072803:CDS |
| AATTGTAGCAGAGAAAAGAT+TGG | 0.480532 | 5.3:+4134333 | MS.gene072803:CDS |
| ATTGGCTTTAATTAAAGCAT+GGG | 0.513985 | 5.3:+4134351 | MS.gene072803:CDS |
| GATTGGCTTTAATTAAAGCA+TGG | 0.523135 | 5.3:+4134350 | MS.gene072803:CDS |
| CAGCCAGGAGCCTACTCAGC+AGG | 0.535469 | 5.3:+4133403 | MS.gene072803:CDS |
| GTTGAGATGGCCTGCTGAGT+AGG | 0.537629 | 5.3:-4133413 | None:intergenic |
| CTGATCATCAAGTGTTGAGA+TGG | 0.554532 | 5.3:-4133426 | None:intergenic |
| GGCACAACTCAAGAAATTTG+AGG | 0.555597 | 5.3:+4134545 | MS.gene072803:CDS |
| GGAAGAATGTCTGGAGCTAG+AGG | 0.585162 | 5.3:+4135680 | MS.gene072803:CDS |
| ATTTCTTTGGTGCAACTCCA+CGG | 0.591194 | 5.3:-4135725 | None:intergenic |
| AAGCAATATCAGTATCAGCC+AGG | 0.592102 | 5.3:+4133388 | MS.gene072803:CDS |
| GCTGCAAAGTTTCGTAGCCG+TGG | 0.595886 | 5.3:+4135708 | MS.gene072803:CDS |
| ATCTTCTGTTGGATTATGGG+AGG | 0.596122 | 5.3:+4134500 | MS.gene072803:CDS |
| GAGGTTGCAGATGATCATGC+TGG | 0.615505 | 5.3:+4134150 | MS.gene072803:intron |
| CAAGTCATGGGAGAATCAGA+AGG | 0.618923 | 5.3:+4133266 | None:intergenic |
| TCCAGAAGAGACTGTAGCTG+TGG | 0.625821 | 5.3:-4133314 | None:intergenic |
| ATGCTGGTAATAAGGAAACA+GGG | 0.632785 | 5.3:+4134166 | MS.gene072803:CDS |
| TGCTGGTAATAAGGAAACAG+GGG | 0.640080 | 5.3:+4134167 | MS.gene072803:CDS |
| GGAAGAAAGTGAAAAGACAA+AGG | 0.645779 | 5.3:+4134372 | MS.gene072803:CDS |
| GGGAAAGCTCTTCAGGAACA+GGG | 0.646598 | 5.3:-4133337 | None:intergenic |
| GCTAAGGGCTCAACTGACAG+AGG | 0.669431 | 5.3:+4134210 | MS.gene072803:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr5.3:4134743-4134762 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr5.3:4134744-4134763 | None:intergenic | 10.0% |
| !!! | ACAAAATTGTTTTAAATAAT+AGG | + | chr5.3:4135548-4135567 | MS.gene072803:intron | 10.0% |
| !!! | GTATTTTTTTTATGAAATTT+TGG | + | chr5.3:4135135-4135154 | MS.gene072803:intron | 10.0% |
| !!! | TTACTTGTATTTAAAATTAA+GGG | + | chr5.3:4135407-4135426 | MS.gene072803:intron | 10.0% |
| !!! | TTTTAAATAATAGGAAAATT+TGG | + | chr5.3:4135557-4135576 | MS.gene072803:intron | 10.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr5.3:4134678-4134697 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr5.3:4134742-4134761 | None:intergenic | 15.0% |
| !! | GTAATCTATACTATATATAA+AGG | - | chr5.3:4135484-4135503 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr5.3:4134679-4134698 | None:intergenic | 15.0% |
| !! | TATCGTATTTATAGTTAATA+TGG | + | chr5.3:4133972-4133991 | MS.gene072803:intron | 15.0% |
| !!! | AAATTGTTTAAGAGTATAAT+TGG | + | chr5.3:4135232-4135251 | MS.gene072803:intron | 15.0% |
| !!! | ATATTTTATATGAGTAAGAA+TGG | - | chr5.3:4134416-4134435 | None:intergenic | 15.0% |
| !!! | GACATTTTTTTTTAGAAAAT+GGG | - | chr5.3:4134608-4134627 | None:intergenic | 15.0% |
| !!! | GTTACTTGTATTTAAAATTA+AGG | + | chr5.3:4135406-4135425 | MS.gene072803:intron | 15.0% |
| !!! | TATTTTATATGAGTAAGAAT+GGG | - | chr5.3:4134415-4134434 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAAGGGTATTTT+TGG | + | chr5.3:4135416-4135435 | MS.gene072803:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr5.3:4134719-4134738 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAA+TGG | - | chr5.3:4134645-4134664 | None:intergenic | 20.0% |
| !! | TAACGTTTGAAAATTATGAA+CGG | + | chr5.3:4135113-4135132 | MS.gene072803:intron | 20.0% |
| !!! | AATTTTGTAAGTTACAAATG+AGG | - | chr5.3:4135536-4135555 | None:intergenic | 20.0% |
| !!! | AGAAAGATTTTATTTGTTCT+AGG | - | chr5.3:4133912-4133931 | None:intergenic | 20.0% |
| !!! | ATTTTGTAAGTTACAAATGA+GGG | - | chr5.3:4135535-4135554 | None:intergenic | 20.0% |
| !!! | CTATCTTGTTTAAATTGTTA+AGG | + | chr5.3:4133779-4133798 | MS.gene072803:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr5.3:4134609-4134628 | None:intergenic | 20.0% |
| !!! | GTTAATATGGAATTTTTTTG+AGG | + | chr5.3:4133985-4134004 | MS.gene072803:intron | 20.0% |
| !!! | GTTTTAGACTTCAAAATTTT+AGG | - | chr5.3:4134022-4134041 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTGTAAATT+AGG | + | chr5.3:4134840-4134859 | MS.gene072803:intron | 20.0% |
| ! | AATAGTTGAAGCTCAAAAAA+GGG | + | chr5.3:4135659-4135678 | MS.gene072803:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr5.3:4134720-4134739 | None:intergenic | 25.0% |
| ! | TTTAAGCCTCCAAATATATT+AGG | - | chr5.3:4133821-4133840 | None:intergenic | 25.0% |
| !! | ACTCATCATATTTTTCATAG+AGG | + | chr5.3:4134131-4134150 | MS.gene072803:intron | 25.0% |
| !! | ATGAATAAAGTGAGTATTGT+GGG | - | chr5.3:4135036-4135055 | None:intergenic | 25.0% |
| !!! | ATTGGCTTTAATTAAAGCAT+GGG | + | chr5.3:4134351-4134370 | MS.gene072803:CDS | 25.0% |
| AAAAGACAAAGGCAGAAAAT+AGG | + | chr5.3:4134383-4134402 | MS.gene072803:CDS | 30.0% | |
| AAATTGTTAAGGTCATTGTC+AGG | + | chr5.3:4133790-4133809 | MS.gene072803:intron | 30.0% | |
| AAGCAAGAAATCATCTATAG+AGG | + | chr5.3:4134524-4134543 | MS.gene072803:CDS | 30.0% | |
| AAGCATGCAAACAATTTCTT+TGG | - | chr5.3:4135741-4135760 | None:intergenic | 30.0% | |
| AATTGTAGCAGAGAAAAGAT+TGG | + | chr5.3:4134333-4134352 | MS.gene072803:CDS | 30.0% | |
| AATTGTTAAGGTCATTGTCA+GGG | + | chr5.3:4133791-4133810 | MS.gene072803:intron | 30.0% | |
| CAATAGTTGAAGCTCAAAAA+AGG | + | chr5.3:4135658-4135677 | MS.gene072803:CDS | 30.0% | |
| GATGATAAAAAGGATGCTAA+GGG | + | chr5.3:4134195-4134214 | MS.gene072803:CDS | 30.0% | |
| TCTAGTATAACGAAGGTTTA+GGG | - | chr5.3:4134979-4134998 | None:intergenic | 30.0% | |
| TGATGATAAAAAGGATGCTA+AGG | + | chr5.3:4134194-4134213 | MS.gene072803:CDS | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr5.3:4134735-4134754 | None:intergenic | 30.0% | |
| TTCTAGTATAACGAAGGTTT+AGG | - | chr5.3:4134980-4134999 | None:intergenic | 30.0% | |
| ! | ATTTTGTTGCATTAGATGCT+GGG | + | chr5.3:4134302-4134321 | MS.gene072803:intron | 30.0% |
| ! | GAAGTCTAAAACCTTAACTT+GGG | + | chr5.3:4134030-4134049 | MS.gene072803:intron | 30.0% |
| ! | GATGAATAAAGTGAGTATTG+TGG | - | chr5.3:4135037-4135056 | None:intergenic | 30.0% |
| ! | TGAAAATGGCTCAGTTATTT+TGG | - | chr5.3:4134631-4134650 | None:intergenic | 30.0% |
| ! | TGAAGTCTAAAACCTTAACT+TGG | + | chr5.3:4134029-4134048 | MS.gene072803:intron | 30.0% |
| !! | GAAAATGGCTCAGTTATTTT+GGG | - | chr5.3:4134630-4134649 | None:intergenic | 30.0% |
| !! | GATTGGCTTTAATTAAAGCA+TGG | + | chr5.3:4134350-4134369 | MS.gene072803:CDS | 30.0% |
| !! | TGATTCATTTTTGTTGATGC+TGG | - | chr5.3:4133294-4133313 | None:intergenic | 30.0% |
| AACCCAAAAATGTGCTGAAA+GGG | + | chr5.3:4135451-4135470 | MS.gene072803:intron | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | - | chr5.3:4135089-4135108 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr5.3:4134595-4134614 | None:intergenic | 35.0% | |
| AGATGATCATGCTGGTAATA+AGG | + | chr5.3:4134158-4134177 | MS.gene072803:CDS | 35.0% | |
| AGCAATCTTCTGTTGGATTA+TGG | + | chr5.3:4134496-4134515 | MS.gene072803:CDS | 35.0% | |
| AGCCTCCAAATATATTAGGT+CGG | - | chr5.3:4133817-4133836 | None:intergenic | 35.0% | |
| AGGGGATCATGATGATAAAA+AGG | + | chr5.3:4134185-4134204 | MS.gene072803:CDS | 35.0% | |
| ATCAATACTAGCGAAAAGAC+GGG | + | chr5.3:4135054-4135073 | MS.gene072803:intron | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | chr5.3:4134764-4134783 | MS.gene072803:intron | 35.0% | |
| ATGCTGGTAATAAGGAAACA+GGG | + | chr5.3:4134166-4134185 | MS.gene072803:CDS | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | - | chr5.3:4135090-4135109 | None:intergenic | 35.0% | |
| CATCAATACTAGCGAAAAGA+CGG | + | chr5.3:4135053-4135072 | MS.gene072803:intron | 35.0% | |
| GAGCTTGATGAAAGATGAAA+TGG | + | chr5.3:4134454-4134473 | MS.gene072803:intron | 35.0% | |
| GCAATCTTCTGTTGGATTAT+GGG | + | chr5.3:4134497-4134516 | MS.gene072803:CDS | 35.0% | |
| GGAAGAAAGTGAAAAGACAA+AGG | + | chr5.3:4134372-4134391 | MS.gene072803:CDS | 35.0% | |
| GTCATCTTCTAGTATAACGA+AGG | - | chr5.3:4134986-4135005 | None:intergenic | 35.0% | |
| TACAAGAAGCAATCTTCTGT+TGG | + | chr5.3:4134489-4134508 | MS.gene072803:CDS | 35.0% | |
| TCAAAAAAGGGAAGAATGTC+TGG | + | chr5.3:4135671-4135690 | MS.gene072803:CDS | 35.0% | |
| ! | CATTTTGTTGCATTAGATGC+TGG | + | chr5.3:4134301-4134320 | MS.gene072803:intron | 35.0% |
| AAAAGCTCATGCAGTGATCA+GGG | - | chr5.3:4134076-4134095 | None:intergenic | 40.0% | |
| AAGCAATATCAGTATCAGCC+AGG | + | chr5.3:4133388-4133407 | MS.gene072803:CDS | 40.0% | |
| ACAAAGGCAGAAAATAGGCA+AGG | + | chr5.3:4134388-4134407 | MS.gene072803:intron | 40.0% | |
| ACCCAAAAATGTGCTGAAAG+GGG | + | chr5.3:4135452-4135471 | MS.gene072803:intron | 40.0% | |
| ATCTTCTGTTGGATTATGGG+AGG | + | chr5.3:4134500-4134519 | MS.gene072803:CDS | 40.0% | |
| CAACCCAAAAATGTGCTGAA+AGG | + | chr5.3:4135450-4135469 | MS.gene072803:intron | 40.0% | |
| CATCTCTTCTAAGCACTCTT+GGG | + | chr5.3:4135009-4135028 | MS.gene072803:intron | 40.0% | |
| CATGCTGGTAATAAGGAAAC+AGG | + | chr5.3:4134165-4134184 | MS.gene072803:CDS | 40.0% | |
| CGTTAGCGCAATAAAAAGAG+CGG | - | chr5.3:4135098-4135117 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr5.3:4134594-4134613 | None:intergenic | 40.0% | |
| GGCACAACTCAAGAAATTTG+AGG | + | chr5.3:4134545-4134564 | MS.gene072803:CDS | 40.0% | |
| TGCTGGTAATAAGGAAACAG+GGG | + | chr5.3:4134167-4134186 | MS.gene072803:CDS | 40.0% | |
| ! | AAACCTTAACTTGGGTTGCT+TGG | + | chr5.3:4134038-4134057 | MS.gene072803:intron | 40.0% |
| ! | ACCCCTTTCAGCACATTTTT+GGG | - | chr5.3:4135456-4135475 | None:intergenic | 40.0% |
| ! | ATTTCTTTGGTGCAACTCCA+CGG | - | chr5.3:4135728-4135747 | None:intergenic | 40.0% |
| ! | CAAACTGGCTCAGATAAAAC+GGG | + | chr5.3:4134779-4134798 | MS.gene072803:intron | 40.0% |
| ! | CCAAACTGGCTCAGATAAAA+CGG | + | chr5.3:4134778-4134797 | MS.gene072803:intron | 40.0% |
| ! | CTGATTCCTTTTCCACAACA+GGG | - | chr5.3:4133361-4133380 | None:intergenic | 40.0% |
| ! | TACCCCTTTCAGCACATTTT+TGG | - | chr5.3:4135457-4135476 | None:intergenic | 40.0% |
| ! | TCTGATTCCTTTTCCACAAC+AGG | - | chr5.3:4133362-4133381 | None:intergenic | 40.0% |
| ! | TGATTCCTTTTCCACAACAG+GGG | - | chr5.3:4133360-4133379 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTAGAAGAGATG+CGG | - | chr5.3:4135009-4135028 | None:intergenic | 40.0% |
| !! | CTGATCATCAAGTGTTGAGA+TGG | - | chr5.3:4133429-4133448 | None:intergenic | 40.0% |
| !! | GACGGAGGGAGTATTATTTA+TGG | + | chr5.3:4134801-4134820 | MS.gene072803:intron | 40.0% |
| !!! | CTTTCAGCACATTTTTGGGT+TGG | - | chr5.3:4135452-4135471 | None:intergenic | 40.0% |
| AAAGATGAAATGGTCGCGCA+GGG | + | chr5.3:4134464-4134483 | MS.gene072803:intron | 45.0% | |
| CAAAAGCTCATGCAGTGATC+AGG | - | chr5.3:4134077-4134096 | None:intergenic | 45.0% | |
| CAGGGCCGACCTAATATATT+TGG | + | chr5.3:4133809-4133828 | MS.gene072803:intron | 45.0% | |
| CGAACTTGTGCATGTAACAG+AGG | - | chr5.3:4134948-4134967 | None:intergenic | 45.0% | |
| CGACACATTTCAGTTCCACA+AGG | - | chr5.3:4134903-4134922 | None:intergenic | 45.0% | |
| GCATCTCTTCTAAGCACTCT+TGG | + | chr5.3:4135008-4135027 | MS.gene072803:intron | 45.0% | |
| GGCCGACCTAATATATTTGG+AGG | + | chr5.3:4133812-4133831 | MS.gene072803:intron | 45.0% | |
| ! | AGAGTGCTTAGAAGAGATGC+GGG | - | chr5.3:4135008-4135027 | None:intergenic | 45.0% |
| ! | CCGTTTTATCTGAGCCAGTT+TGG | - | chr5.3:4134781-4134800 | None:intergenic | 45.0% |
| !!! | TATACTTTTTAAATAATAAA+AGG | + | chr5.3:4135297-4135316 | MS.gene072803:intron | 5.0% |
| ACAACAGGGGAAAGCTCTTC+AGG | - | chr5.3:4133347-4133366 | None:intergenic | 50.0% | |
| ACCACAGCTACAGTCTCTTC+TGG | + | chr5.3:4133313-4133332 | MS.gene072803:CDS | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr5.3:4134590-4134609 | None:intergenic | 50.0% | |
| ATTAGTTACTCCCTCCGTCC+CGG | + | chr5.3:4134573-4134592 | MS.gene072803:intron | 50.0% | |
| CTCAGATAAAACGGGACGGA+GGG | + | chr5.3:4134787-4134806 | MS.gene072803:intron | 50.0% | |
| CTGGCTCAGATAAAACGGGA+CGG | + | chr5.3:4134783-4134802 | MS.gene072803:intron | 50.0% | |
| GAAAGATGAAATGGTCGCGC+AGG | + | chr5.3:4134463-4134482 | MS.gene072803:intron | 50.0% | |
| GACAAATCTCTCGAGCCTTG+TGG | + | chr5.3:4134885-4134904 | MS.gene072803:intron | 50.0% | |
| GAGGTTGCAGATGATCATGC+TGG | + | chr5.3:4134150-4134169 | MS.gene072803:intron | 50.0% | |
| GCTTTCCCCTGTTGTGGAAA+AGG | + | chr5.3:4133352-4133371 | MS.gene072803:CDS | 50.0% | |
| GGGAAAGCTCTTCAGGAACA+GGG | - | chr5.3:4133340-4133359 | None:intergenic | 50.0% | |
| TCCAGAAGAGACTGTAGCTG+TGG | - | chr5.3:4133317-4133336 | None:intergenic | 50.0% | |
| TGAAGAGCTTTCCCCTGTTG+TGG | + | chr5.3:4133346-4133365 | MS.gene072803:CDS | 50.0% | |
| ! | GGAAGAATGTCTGGAGCTAG+AGG | + | chr5.3:4135680-4135699 | MS.gene072803:CDS | 50.0% |
| AAAGAGCGGAAAGACGGGCA+CGG | - | chr5.3:4135084-4135103 | None:intergenic | 55.0% | |
| GCTAAGGGCTCAACTGACAG+AGG | + | chr5.3:4134210-4134229 | MS.gene072803:CDS | 55.0% | |
| GCTCAGATAAAACGGGACGG+AGG | + | chr5.3:4134786-4134805 | MS.gene072803:intron | 55.0% | |
| GCTCATGCAGTGATCAGGGT+TGG | - | chr5.3:4134072-4134091 | None:intergenic | 55.0% | |
| GCTGCAAAGTTTCGTAGCCG+TGG | + | chr5.3:4135708-4135727 | MS.gene072803:CDS | 55.0% | |
| GGGCCAAGCAACCCAAGTTA+AGG | - | chr5.3:4134044-4134063 | None:intergenic | 55.0% | |
| GGGGAAAGCTCTTCAGGAAC+AGG | - | chr5.3:4133341-4133360 | None:intergenic | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr5.3:4134586-4134605 | None:intergenic | 55.0% | |
| GTTGAGATGGCCTGCTGAGT+AGG | - | chr5.3:4133416-4133435 | None:intergenic | 55.0% | |
| ! | AACTTGGGTTGCTTGGCCCT+TGG | + | chr5.3:4134045-4134064 | MS.gene072803:intron | 55.0% |
| ! | ACTTGGGTTGCTTGGCCCTT+GGG | + | chr5.3:4134046-4134065 | MS.gene072803:intron | 55.0% |
| !! | AGTGATCAGGGTTGGCCCAA+GGG | - | chr5.3:4134064-4134083 | None:intergenic | 55.0% |
| GGTCAGATATTCCGGGACGG+AGG | - | chr5.3:4134587-4134606 | None:intergenic | 60.0% | |
| !! | CAGTGATCAGGGTTGGCCCA+AGG | - | chr5.3:4134065-4134084 | None:intergenic | 60.0% |
| CAGCCAGGAGCCTACTCAGC+AGG | + | chr5.3:4133403-4133422 | MS.gene072803:CDS | 65.0% | |
| TGGCCTGCTGAGTAGGCTCC+TGG | - | chr5.3:4133409-4133428 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4133272 | 4135770 | 4133272 | ID=MS.gene072803 |
| chr5.3 | mRNA | 4133272 | 4135770 | 4133272 | ID=MS.gene072803.t1;Parent=MS.gene072803 |
| chr5.3 | exon | 4133272 | 4133449 | 4133272 | ID=MS.gene072803.t1.exon1;Parent=MS.gene072803.t1 |
| chr5.3 | CDS | 4133272 | 4133449 | 4133272 | ID=cds.MS.gene072803.t1;Parent=MS.gene072803.t1 |
| chr5.3 | exon | 4134151 | 4134231 | 4134151 | ID=MS.gene072803.t1.exon2;Parent=MS.gene072803.t1 |
| chr5.3 | CDS | 4134151 | 4134231 | 4134151 | ID=cds.MS.gene072803.t1;Parent=MS.gene072803.t1 |
| chr5.3 | exon | 4134317 | 4134404 | 4134317 | ID=MS.gene072803.t1.exon3;Parent=MS.gene072803.t1 |
| chr5.3 | CDS | 4134317 | 4134404 | 4134317 | ID=cds.MS.gene072803.t1;Parent=MS.gene072803.t1 |
| chr5.3 | exon | 4134485 | 4134566 | 4134485 | ID=MS.gene072803.t1.exon4;Parent=MS.gene072803.t1 |
| chr5.3 | CDS | 4134485 | 4134566 | 4134485 | ID=cds.MS.gene072803.t1;Parent=MS.gene072803.t1 |
| chr5.3 | exon | 4135570 | 4135770 | 4135570 | ID=MS.gene072803.t1.exon5;Parent=MS.gene072803.t1 |
| chr5.3 | CDS | 4135570 | 4135770 | 4135570 | ID=cds.MS.gene072803.t1;Parent=MS.gene072803.t1 |
| Gene Sequence |
| Protein sequence |
