Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08202.t1 | XP_013449506.1 | 99.1 | 217 | 2 | 0 | 1 | 217 | 1 | 217 | 1.60E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08202.t1 | A0A072U1E7 | 99.1 | 217 | 2 | 0 | 1 | 217 | 1 | 217 | 1.2e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene08202 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene049283 | MS.gene08202 | 0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene08202 | 0.806666 | 7.36E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene08202 | -0.807986 | 3.87E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene08202 | 0.848286 | 6.75E-60 | -1.69E-46 |
| MS.gene050654 | MS.gene08202 | 0.856936 | 2.30E-62 | -1.69E-46 |
| MS.gene050737 | MS.gene08202 | 0.810183 | 1.31E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene08202 | 0.80334 | 3.65E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene08202 | 0.840096 | 1.07E-57 | -1.69E-46 |
| MS.gene051122 | MS.gene08202 | 0.851771 | 7.14E-61 | -1.69E-46 |
| MS.gene051184 | MS.gene08202 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene08202 | 0.842815 | 2.05E-58 | -1.69E-46 |
| MS.gene051655 | MS.gene08202 | 0.824261 | 8.88E-54 | -1.69E-46 |
| MS.gene052052 | MS.gene08202 | 0.823945 | 1.05E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene08202 | 0.825242 | 5.22E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene08202 | 0.838404 | 2.93E-57 | -1.69E-46 |
| MS.gene052493 | MS.gene08202 | 0.830599 | 2.68E-55 | -1.69E-46 |
| MS.gene052586 | MS.gene08202 | 0.801598 | 8.35E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene08202 | 0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene08202 | 0.800895 | 1.16E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene08202 | 0.803159 | 3.98E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene08202 | 0.818609 | 1.79E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene08202 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene08202 | 0.856902 | 2.35E-62 | -1.69E-46 |
| MS.gene054893 | MS.gene08202 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene08202 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene08202 | 0.867686 | 1.14E-65 | -1.69E-46 |
| MS.gene056480 | MS.gene08202 | 0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene08202 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene056779 | MS.gene08202 | 0.830713 | 2.52E-55 | -1.69E-46 |
| MS.gene057055 | MS.gene08202 | 0.812575 | 3.96E-51 | -1.69E-46 |
| MS.gene057155 | MS.gene08202 | 0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene08202 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene08202 | 0.83566 | 1.47E-56 | -1.69E-46 |
| MS.gene058223 | MS.gene08202 | -0.806331 | 8.67E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene08202 | 0.84441 | 7.69E-59 | -1.69E-46 |
| MS.gene058897 | MS.gene08202 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene08202 | 0.839318 | 1.70E-57 | -1.69E-46 |
| MS.gene059952 | MS.gene08202 | 0.817526 | 3.15E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene08202 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene08202 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene08202 | 0.841365 | 4.97E-58 | -1.69E-46 |
| MS.gene060520 | MS.gene08202 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene08202 | 0.842631 | 2.30E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene08202 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene08202 | 0.833879 | 4.14E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene08202 | 0.850836 | 1.31E-60 | -1.69E-46 |
| MS.gene060852 | MS.gene08202 | 0.851533 | 8.34E-61 | -1.69E-46 |
| MS.gene060869 | MS.gene08202 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene08202 | 0.872329 | 3.46E-67 | -1.69E-46 |
| MS.gene06121 | MS.gene08202 | 0.816875 | 4.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08202.t1 | MTR_7g085680 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 2.30e-162 | 447 |
| MS.gene08202.t1 | MTR_1g016800 | 38.645 | 251 | 106 | 8 | 12 | 217 | 46 | 293 | 5.67e-44 | 149 |
| MS.gene08202.t1 | MTR_8g070650 | 38.528 | 231 | 108 | 9 | 17 | 217 | 27 | 253 | 6.94e-32 | 116 |
| MS.gene08202.t1 | MTR_6g083920 | 27.442 | 215 | 113 | 4 | 20 | 195 | 17 | 227 | 1.12e-14 | 70.9 |
| MS.gene08202.t1 | MTR_5g056110 | 31.959 | 97 | 60 | 1 | 111 | 201 | 123 | 219 | 1.76e-11 | 62.0 |
| MS.gene08202.t1 | MTR_6g008660 | 28.169 | 213 | 112 | 8 | 20 | 201 | 41 | 243 | 8.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08202.t1 | AT1G55340 | 55.856 | 222 | 71 | 9 | 4 | 217 | 3 | 205 | 1.46e-69 | 211 |
| MS.gene08202.t1 | AT1G55340 | 54.545 | 220 | 67 | 7 | 4 | 217 | 3 | 195 | 2.25e-67 | 206 |
| MS.gene08202.t1 | AT3G03880 | 54.028 | 211 | 70 | 7 | 13 | 217 | 4 | 193 | 2.64e-63 | 195 |
| MS.gene08202.t1 | AT4G20300 | 43.949 | 157 | 66 | 5 | 83 | 217 | 196 | 352 | 8.70e-30 | 113 |
| MS.gene08202.t1 | AT4G20300 | 43.885 | 139 | 58 | 4 | 83 | 201 | 196 | 334 | 5.54e-26 | 103 |
Find 54 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTCTTTGGATGATTT+TGG | 0.165257 | 7.3:-22962791 | None:intergenic |
| AACTTACCAATAAGCTTCTT+TGG | 0.237998 | 7.3:-22962801 | None:intergenic |
| CTGTTGCCTTACATGCTCTT+TGG | 0.238559 | 7.3:-22961749 | None:intergenic |
| AATCATCCAAAGAAGCTTAT+TGG | 0.258024 | 7.3:+22962795 | MS.gene08202:CDS |
| ATCAGAAGAAAGCTTAATTC+TGG | 0.302031 | 7.3:+22961867 | MS.gene08202:CDS |
| AGGAAGCTTACAACCTTTCA+TGG | 0.340391 | 7.3:-22962749 | None:intergenic |
| GTCAAGAGAGATATGAAGTT+AGG | 0.367836 | 7.3:+22962982 | MS.gene08202:CDS |
| AACAACCTTGTGAGACGATT+AGG | 0.386278 | 7.3:-22961957 | None:intergenic |
| TCTTCTTGCAGTGGGGAAAC+AGG | 0.395699 | 7.3:+22961781 | MS.gene08202:CDS |
| CGGATTTCAACTAGGCTTAA+CGG | 0.415814 | 7.3:+22961837 | MS.gene08202:CDS |
| TCAAGAGAGATATGAAGTTA+GGG | 0.417350 | 7.3:+22962983 | MS.gene08202:CDS |
| TGTTTACAGTTGGTAAGTCC+TGG | 0.420464 | 7.3:+22962939 | MS.gene08202:intron |
| CCCATAGCCTTCAATCCTCT+TGG | 0.424567 | 7.3:-22963133 | None:intergenic |
| GAGGAACCAAAGAGCATGTA+AGG | 0.432240 | 7.3:+22961743 | MS.gene08202:CDS |
| GGAGTGGAGAATCATCGTTC+TGG | 0.453670 | 7.3:+22961888 | MS.gene08202:CDS |
| GGCCGGAGATAACAGAAAAT+CGG | 0.460576 | 7.3:+22962567 | MS.gene08202:CDS |
| CCAAGAGGATTGAAGGCTAT+GGG | 0.481069 | 7.3:+22963133 | MS.gene08202:CDS |
| GCAGAGGCCAAGAGGATTGA+AGG | 0.486507 | 7.3:+22963126 | MS.gene08202:intron |
| GCCAAGAGGATTGAAGGCTA+TGG | 0.494932 | 7.3:+22963132 | MS.gene08202:CDS |
| AACATCGCAAGTGCCTTTAC+CGG | 0.498467 | 7.3:-22962644 | None:intergenic |
| AAGATCCTCGGATTTCAACT+AGG | 0.502257 | 7.3:+22961829 | MS.gene08202:CDS |
| ACCAGAGTTCTTCTTGCAGT+GGG | 0.504536 | 7.3:+22961773 | MS.gene08202:CDS |
| CCCCACTGCAAGAAGAACTC+TGG | 0.514893 | 7.3:-22961774 | None:intergenic |
| TCAGCAGAGGACACCGGTAA+AGG | 0.516208 | 7.3:+22962631 | MS.gene08202:CDS |
| GGAGAAGAAAAGTAACAAGA+AGG | 0.520874 | 7.3:+22963004 | MS.gene08202:CDS |
| GAGAGAGTAATGTAAAGCTT+AGG | 0.521687 | 7.3:-22962697 | None:intergenic |
| ATTGAAGGCTATGGGGAGTG+TGG | 0.522393 | 7.3:+22963141 | MS.gene08202:CDS |
| GGCACTTGCGATGTTATCAA+TGG | 0.530662 | 7.3:+22962652 | MS.gene08202:CDS |
| TAACAGAAAATCGGCATCAC+CGG | 0.532579 | 7.3:+22962576 | MS.gene08202:CDS |
| ATATCAGTCAACCATGCTCC+AGG | 0.532665 | 7.3:-22962957 | None:intergenic |
| AAAATCGGCATCACCGGAGA+AGG | 0.542456 | 7.3:+22962582 | MS.gene08202:CDS |
| TTGGTATGCAGGAATTCCGA+TGG | 0.546689 | 7.3:+22962526 | MS.gene08202:intron |
| TAGTATCGATCTTCCTTCTC+CGG | 0.549815 | 7.3:-22962595 | None:intergenic |
| ACTATTCTACGACCGGCGGC+CGG | 0.561495 | 7.3:+22962550 | MS.gene08202:CDS |
| AACCAGAGTTCTTCTTGCAG+TGG | 0.563420 | 7.3:+22961772 | MS.gene08202:CDS |
| CGATGGAACTATTCTACGAC+CGG | 0.568292 | 7.3:+22962543 | MS.gene08202:CDS |
| AGTTGGTAAGTCCTGGAGCA+TGG | 0.569217 | 7.3:+22962946 | MS.gene08202:intron |
| TTTCTGTTATCTCCGGCCGC+CGG | 0.574206 | 7.3:-22962562 | None:intergenic |
| GTGTGAGGGTGAAAGATCCT+CGG | 0.605489 | 7.3:+22961817 | MS.gene08202:CDS |
| AAGAAAGCTTAATTCTGGAG+TGG | 0.623077 | 7.3:+22961872 | MS.gene08202:CDS |
| CGGTCGTAGAATAGTTCCAT+CGG | 0.626224 | 7.3:-22962542 | None:intergenic |
| TAGAAATGGAGACAGAAGAG+AGG | 0.628747 | 7.3:+22961724 | None:intergenic |
| AGATCGATACTACACGACGA+GGG | 0.631631 | 7.3:+22962606 | MS.gene08202:CDS |
| GATCGATACTACACGACGAG+GGG | 0.647579 | 7.3:+22962607 | MS.gene08202:CDS |
| CAAGAGGATTGAAGGCTATG+GGG | 0.656812 | 7.3:+22963134 | MS.gene08202:CDS |
| ATCGATACTACACGACGAGG+GGG | 0.671513 | 7.3:+22962608 | MS.gene08202:CDS |
| CCAGAGTTCTTCTTGCAGTG+GGG | 0.679245 | 7.3:+22961774 | MS.gene08202:CDS |
| AACAACCTAATCGTCTCACA+AGG | 0.681018 | 7.3:+22961952 | MS.gene08202:CDS |
| TGGAACTATTCTACGACCGG+CGG | 0.694045 | 7.3:+22962546 | MS.gene08202:CDS |
| AAGATCGATACTACACGACG+AGG | 0.699452 | 7.3:+22962605 | MS.gene08202:CDS |
| TTAAGCCTAGTTGAAATCCG+AGG | 0.705168 | 7.3:-22961834 | None:intergenic |
| GAAGCGTTTGAGATGTGTGA+GGG | 0.718640 | 7.3:+22961803 | MS.gene08202:CDS |
| ATTTCAACTAGGCTTAACGG+TGG | 0.734742 | 7.3:+22961840 | MS.gene08202:CDS |
| GGAAGCGTTTGAGATGTGTG+AGG | 0.737974 | 7.3:+22961802 | MS.gene08202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGAGATAAAATAAAAA+AGG | - | chr7.3:22963069-22963088 | None:intergenic | 10.0% |
| !!! | TTTTTATGTTGTTTTTATTA+TGG | + | chr7.3:22962845-22962864 | MS.gene08202:intron | 10.0% |
| !!! | AAAAGAAAAAATGGTTTTTT+TGG | + | chr7.3:22962166-22962185 | MS.gene08202:intron | 15.0% |
| !!! | ATTTTGAGTAAAAGAAAAAA+TGG | + | chr7.3:22962157-22962176 | MS.gene08202:intron | 15.0% |
| !!! | ATTTTTTATGTGATTTTGAT+TGG | + | chr7.3:22962498-22962517 | MS.gene08202:intron | 15.0% |
| !!! | TGTTTTTATTATGGTTAATT+GGG | + | chr7.3:22962854-22962873 | MS.gene08202:intron | 15.0% |
| !!! | TTGTTTTTATTATGGTTAAT+TGG | + | chr7.3:22962853-22962872 | MS.gene08202:intron | 15.0% |
| !! | AATACAAGTTTATATCATCT+GGG | - | chr7.3:22962389-22962408 | None:intergenic | 20.0% |
| ! | GAATACAAGTTTATATCATC+TGG | - | chr7.3:22962390-22962409 | None:intergenic | 25.0% |
| ! | TTATTATGGTTAATTGGGTT+TGG | + | chr7.3:22962859-22962878 | MS.gene08202:intron | 25.0% |
| !! | CTGAAAAAAAAACTGGATTT+TGG | + | chr7.3:22962059-22962078 | MS.gene08202:intron | 25.0% |
| !! | CTTTTACTCAAAATCAAACA+AGG | - | chr7.3:22962151-22962170 | None:intergenic | 25.0% |
| !!! | AAATCCAGTTTTTTTTTCAG+AGG | - | chr7.3:22962059-22962078 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCAGAAGGGTAT+TGG | + | chr7.3:22962423-22962442 | MS.gene08202:intron | 25.0% |
| !!! | GTAATGATGTTGTTTTCATT+TGG | + | chr7.3:22962212-22962231 | MS.gene08202:intron | 25.0% |
| !!! | TGATGGATTTTTTTTCAGAA+GGG | + | chr7.3:22962417-22962436 | MS.gene08202:intron | 25.0% |
| !!! | TTGATGGATTTTTTTTCAGA+AGG | + | chr7.3:22962416-22962435 | MS.gene08202:intron | 25.0% |
| !!! | TTTTCATTTGGTTGGTTAAT+GGG | + | chr7.3:22962224-22962243 | MS.gene08202:intron | 25.0% |
| !!! | TTTTGGTTTGTGAAAAATGA+TGG | + | chr7.3:22962076-22962095 | MS.gene08202:intron | 25.0% |
| AAAAGTAACAAGAAGGTAAG+CGG | + | chr7.3:22963011-22963030 | MS.gene08202:intron | 30.0% | |
| AACTTACCAATAAGCTTCTT+TGG | - | chr7.3:22962804-22962823 | None:intergenic | 30.0% | |
| AATCATCCAAAGAAGCTTAT+TGG | + | chr7.3:22962795-22962814 | MS.gene08202:CDS | 30.0% | |
| ACTTGTATTCTGTTCTTTGA+TGG | + | chr7.3:22962400-22962419 | MS.gene08202:intron | 30.0% | |
| AGATGAAGATGAAGATAAAG+AGG | - | chr7.3:22962017-22962036 | None:intergenic | 30.0% | |
| ATCAGAAGAAAGCTTAATTC+TGG | + | chr7.3:22961867-22961886 | MS.gene08202:CDS | 30.0% | |
| GAAGATAAGCATAAAAGAGA+GGG | + | chr7.3:22962260-22962279 | MS.gene08202:intron | 30.0% | |
| GAGTACAAACACTGAAAAAA+TGG | - | chr7.3:22962294-22962313 | None:intergenic | 30.0% | |
| TCAAGAGAGATATGAAGTTA+GGG | + | chr7.3:22962983-22963002 | MS.gene08202:CDS | 30.0% | |
| TCATCTTATTCTTCCTTGTT+TGG | + | chr7.3:22962031-22962050 | MS.gene08202:intron | 30.0% | |
| TGAAGATAAGCATAAAAGAG+AGG | + | chr7.3:22962259-22962278 | MS.gene08202:intron | 30.0% | |
| TTGAAAACGACCATAACAAA+TGG | + | chr7.3:22961978-22961997 | MS.gene08202:intron | 30.0% | |
| ! | TAAGCTTCTTTGGATGATTT+TGG | - | chr7.3:22962794-22962813 | None:intergenic | 30.0% |
| ! | TTTCATTTGGTTGGTTAATG+GGG | + | chr7.3:22962225-22962244 | MS.gene08202:intron | 30.0% |
| !! | GTTTTCATTTGGTTGGTTAA+TGG | + | chr7.3:22962223-22962242 | MS.gene08202:intron | 30.0% |
| !!! | GTGATTTTGATTGGAAGTTT+TGG | + | chr7.3:22962507-22962526 | MS.gene08202:intron | 30.0% |
| !!! | TGATGTTGTTTTCATTTGGT+TGG | + | chr7.3:22962216-22962235 | MS.gene08202:intron | 30.0% |
| ACAAACACCAAACAAACATG+TGG | - | chr7.3:22962922-22962941 | None:intergenic | 35.0% | |
| ATGTTGTCCACATGTTTGTT+TGG | + | chr7.3:22962912-22962931 | MS.gene08202:intron | 35.0% | |
| CCATAACAAATGGATCTTCT+CGG | + | chr7.3:22961988-22962007 | MS.gene08202:intron | 35.0% | |
| GAGAAGAAAAAGCTCTTGTT+TGG | + | chr7.3:22962674-22962693 | MS.gene08202:CDS | 35.0% | |
| GAGAGAGTAATGTAAAGCTT+AGG | - | chr7.3:22962700-22962719 | None:intergenic | 35.0% | |
| GGAGAAGAAAAGTAACAAGA+AGG | + | chr7.3:22963004-22963023 | MS.gene08202:CDS | 35.0% | |
| GTCAAGAGAGATATGAAGTT+AGG | + | chr7.3:22962982-22963001 | MS.gene08202:CDS | 35.0% | |
| ! | AAGAAAGCTTAATTCTGGAG+TGG | + | chr7.3:22961872-22961891 | MS.gene08202:CDS | 35.0% |
| ! | GAAGATTTTCTTGCCATGAA+AGG | + | chr7.3:22962736-22962755 | MS.gene08202:CDS | 35.0% |
| ! | GGTTCCTCTGAAAAAAAAAC+TGG | + | chr7.3:22962052-22962071 | MS.gene08202:intron | 35.0% |
| !! | ATGATTTTGGCCCTCTTTTT+GGG | - | chr7.3:22962781-22962800 | None:intergenic | 35.0% |
| !! | GTTTGGTGTTTGTTTACAGT+TGG | + | chr7.3:22962929-22962948 | MS.gene08202:intron | 35.0% |
| !! | TTTTTCAGAGGAACCAAACA+AGG | - | chr7.3:22962047-22962066 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTTTTTGATGCAG+AGG | + | chr7.3:22963110-22963129 | MS.gene08202:intron | 35.0% |
| AACAACCTAATCGTCTCACA+AGG | + | chr7.3:22961952-22961971 | MS.gene08202:CDS | 40.0% | |
| AACAACCTTGTGAGACGATT+AGG | - | chr7.3:22961960-22961979 | None:intergenic | 40.0% | |
| AAGATCCTCGGATTTCAACT+AGG | + | chr7.3:22961829-22961848 | MS.gene08202:CDS | 40.0% | |
| AGGAAGCTTACAACCTTTCA+TGG | - | chr7.3:22962752-22962771 | None:intergenic | 40.0% | |
| ATTTCAACTAGGCTTAACGG+TGG | + | chr7.3:22961840-22961859 | MS.gene08202:CDS | 40.0% | |
| CGGATTTCAACTAGGCTTAA+CGG | + | chr7.3:22961837-22961856 | MS.gene08202:CDS | 40.0% | |
| TAACAGAAAATCGGCATCAC+CGG | + | chr7.3:22962576-22962595 | MS.gene08202:CDS | 40.0% | |
| TCCTCAAAGACCCAAAAAGA+GGG | + | chr7.3:22962768-22962787 | MS.gene08202:CDS | 40.0% | |
| TTAAGCCTAGTTGAAATCCG+AGG | - | chr7.3:22961837-22961856 | None:intergenic | 40.0% | |
| TTCCTCAAAGACCCAAAAAG+AGG | + | chr7.3:22962767-22962786 | MS.gene08202:CDS | 40.0% | |
| ! | CCGAGAAGATCCATTTGTTA+TGG | - | chr7.3:22961991-22962010 | None:intergenic | 40.0% |
| !! | GATGATTTTGGCCCTCTTTT+TGG | - | chr7.3:22962782-22962801 | None:intergenic | 40.0% |
| !! | GATTGGAAGTTTTGGTATGC+AGG | + | chr7.3:22962515-22962534 | MS.gene08202:intron | 40.0% |
| !! | TAGTATCGATCTTCCTTCTC+CGG | - | chr7.3:22962598-22962617 | None:intergenic | 40.0% |
| !! | TGTTTACAGTTGGTAAGTCC+TGG | + | chr7.3:22962939-22962958 | MS.gene08202:intron | 40.0% |
| !!! | TGCCGATTTTCTGTTATCTC+CGG | - | chr7.3:22962572-22962591 | None:intergenic | 40.0% |
| AACATCGCAAGTGCCTTTAC+CGG | - | chr7.3:22962647-22962666 | None:intergenic | 45.0% | |
| AACCAGAGTTCTTCTTGCAG+TGG | + | chr7.3:22961772-22961791 | MS.gene08202:CDS | 45.0% | |
| AAGATCGATACTACACGACG+AGG | + | chr7.3:22962605-22962624 | MS.gene08202:CDS | 45.0% | |
| ACAAGAAGGTAAGCGGTTGT+TGG | + | chr7.3:22963018-22963037 | MS.gene08202:intron | 45.0% | |
| ACCAGAGTTCTTCTTGCAGT+GGG | + | chr7.3:22961773-22961792 | MS.gene08202:CDS | 45.0% | |
| AGATCGATACTACACGACGA+GGG | + | chr7.3:22962606-22962625 | MS.gene08202:CDS | 45.0% | |
| ATATCAGTCAACCATGCTCC+AGG | - | chr7.3:22962960-22962979 | None:intergenic | 45.0% | |
| CAAGAGGATTGAAGGCTATG+GGG | + | chr7.3:22963134-22963153 | MS.gene08202:CDS | 45.0% | |
| CCAAGAGGATTGAAGGCTAT+GGG | + | chr7.3:22963133-22963152 | MS.gene08202:CDS | 45.0% | |
| CGATGGAACTATTCTACGAC+CGG | + | chr7.3:22962543-22962562 | MS.gene08202:CDS | 45.0% | |
| CGGTCGTAGAATAGTTCCAT+CGG | - | chr7.3:22962545-22962564 | None:intergenic | 45.0% | |
| CTGTTGCCTTACATGCTCTT+TGG | - | chr7.3:22961752-22961771 | None:intergenic | 45.0% | |
| GGCACTTGCGATGTTATCAA+TGG | + | chr7.3:22962652-22962671 | MS.gene08202:CDS | 45.0% | |
| GGCCGGAGATAACAGAAAAT+CGG | + | chr7.3:22962567-22962586 | MS.gene08202:CDS | 45.0% | |
| TTGGTATGCAGGAATTCCGA+TGG | + | chr7.3:22962526-22962545 | MS.gene08202:intron | 45.0% | |
| ! | GAAGCGTTTGAGATGTGTGA+GGG | + | chr7.3:22961803-22961822 | MS.gene08202:CDS | 45.0% |
| ! | GAGGAACCAAAGAGCATGTA+AGG | + | chr7.3:22961743-22961762 | MS.gene08202:CDS | 45.0% |
| ! | TTTTTGATGCAGAGGCCAAG+AGG | + | chr7.3:22963118-22963137 | MS.gene08202:intron | 45.0% |
| !!! | TTTTTCTAAATATAATTTTT+GGG | + | chr7.3:22963095-22963114 | MS.gene08202:intron | 5.0% |
| !!! | TTTTTTCTAAATATAATTTT+TGG | + | chr7.3:22963094-22963113 | MS.gene08202:intron | 5.0% |
| AAAATCGGCATCACCGGAGA+AGG | + | chr7.3:22962582-22962601 | MS.gene08202:CDS | 50.0% | |
| ATCGATACTACACGACGAGG+GGG | + | chr7.3:22962608-22962627 | MS.gene08202:CDS | 50.0% | |
| ATTGAAGGCTATGGGGAGTG+TGG | + | chr7.3:22963141-22963160 | MS.gene08202:CDS | 50.0% | |
| CCAGAGTTCTTCTTGCAGTG+GGG | + | chr7.3:22961774-22961793 | MS.gene08202:CDS | 50.0% | |
| CCCATAGCCTTCAATCCTCT+TGG | - | chr7.3:22963136-22963155 | None:intergenic | 50.0% | |
| GATCGATACTACACGACGAG+GGG | + | chr7.3:22962607-22962626 | MS.gene08202:CDS | 50.0% | |
| GCCAAGAGGATTGAAGGCTA+TGG | + | chr7.3:22963132-22963151 | MS.gene08202:CDS | 50.0% | |
| GGAGTGGAGAATCATCGTTC+TGG | + | chr7.3:22961888-22961907 | MS.gene08202:CDS | 50.0% | |
| GTGTGAGGGTGAAAGATCCT+CGG | + | chr7.3:22961817-22961836 | MS.gene08202:CDS | 50.0% | |
| TCTTCTTGCAGTGGGGAAAC+AGG | + | chr7.3:22961781-22961800 | MS.gene08202:CDS | 50.0% | |
| TGGAACTATTCTACGACCGG+CGG | + | chr7.3:22962546-22962565 | MS.gene08202:CDS | 50.0% | |
| !! | AGTTGGTAAGTCCTGGAGCA+TGG | + | chr7.3:22962946-22962965 | MS.gene08202:intron | 50.0% |
| !! | GGAAGCGTTTGAGATGTGTG+AGG | + | chr7.3:22961802-22961821 | MS.gene08202:CDS | 50.0% |
| !!! | GCCCTCTTTTTGGGTCTTTG+AGG | - | chr7.3:22962772-22962791 | None:intergenic | 50.0% |
| CCCCACTGCAAGAAGAACTC+TGG | - | chr7.3:22961777-22961796 | None:intergenic | 55.0% | |
| GCAGAGGCCAAGAGGATTGA+AGG | + | chr7.3:22963126-22963145 | MS.gene08202:intron | 55.0% | |
| TCAGCAGAGGACACCGGTAA+AGG | + | chr7.3:22962631-22962650 | MS.gene08202:CDS | 55.0% | |
| TTTCTGTTATCTCCGGCCGC+CGG | - | chr7.3:22962565-22962584 | None:intergenic | 55.0% | |
| ACTATTCTACGACCGGCGGC+CGG | + | chr7.3:22962550-22962569 | MS.gene08202:CDS | 60.0% | |
| AGGGGGTCAGCAGAGGACAC+CGG | + | chr7.3:22962625-22962644 | MS.gene08202:CDS | 65.0% | |
| CACGACGAGGGGGTCAGCAG+AGG | + | chr7.3:22962618-22962637 | MS.gene08202:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22961729 | 22963180 | 22961729 | ID=MS.gene08202 |
| chr7.3 | mRNA | 22961729 | 22963180 | 22961729 | ID=MS.gene08202.t1;Parent=MS.gene08202 |
| chr7.3 | exon | 22961729 | 22961973 | 22961729 | ID=MS.gene08202.t1.exon1;Parent=MS.gene08202.t1 |
| chr7.3 | CDS | 22961729 | 22961973 | 22961729 | ID=cds.MS.gene08202.t1;Parent=MS.gene08202.t1 |
| chr7.3 | exon | 22962537 | 22962816 | 22962537 | ID=MS.gene08202.t1.exon2;Parent=MS.gene08202.t1 |
| chr7.3 | CDS | 22962537 | 22962816 | 22962537 | ID=cds.MS.gene08202.t1;Parent=MS.gene08202.t1 |
| chr7.3 | exon | 22962948 | 22963025 | 22962948 | ID=MS.gene08202.t1.exon3;Parent=MS.gene08202.t1 |
| chr7.3 | CDS | 22962948 | 22963025 | 22962948 | ID=cds.MS.gene08202.t1;Parent=MS.gene08202.t1 |
| chr7.3 | exon | 22963130 | 22963180 | 22963130 | ID=MS.gene08202.t1.exon4;Parent=MS.gene08202.t1 |
| chr7.3 | CDS | 22963130 | 22963180 | 22963130 | ID=cds.MS.gene08202.t1;Parent=MS.gene08202.t1 |
| Gene Sequence |
| Protein sequence |
