Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09158.t1 | XP_013455950.1 | 98.9 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 6.00E-104 | 386.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09158.t1 | O49818 | 95.6 | 182 | 8 | 0 | 1 | 182 | 1 | 182 | 2.8e-102 | 372.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09158.t1 | A0A072UKQ3 | 98.9 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 4.3e-104 | 386.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049222 | MS.gene09158 | 0.806379 | 8.47E-50 | -1.69E-46 |
MS.gene049609 | MS.gene09158 | 0.842948 | 1.89E-58 | -1.69E-46 |
MS.gene049627 | MS.gene09158 | 0.80968 | 1.68E-50 | -1.69E-46 |
MS.gene049794 | MS.gene09158 | 0.899222 | 2.45E-77 | -1.69E-46 |
MS.gene050538 | MS.gene09158 | 0.807099 | 5.96E-50 | -1.69E-46 |
MS.gene050547 | MS.gene09158 | -0.801547 | 8.55E-49 | -1.69E-46 |
MS.gene050593 | MS.gene09158 | 0.821111 | 4.80E-53 | -1.69E-46 |
MS.gene050699 | MS.gene09158 | 0.802458 | 5.56E-49 | -1.69E-46 |
MS.gene050747 | MS.gene09158 | 0.838494 | 2.78E-57 | -1.69E-46 |
MS.gene050772 | MS.gene09158 | 0.81424 | 1.70E-51 | -1.69E-46 |
MS.gene050937 | MS.gene09158 | -0.813949 | 1.98E-51 | -1.69E-46 |
MS.gene050950 | MS.gene09158 | 0.839679 | 1.37E-57 | -1.69E-46 |
MS.gene051387 | MS.gene09158 | 0.804832 | 1.79E-49 | -1.69E-46 |
MS.gene051694 | MS.gene09158 | 0.836495 | 9.05E-57 | -1.69E-46 |
MS.gene051838 | MS.gene09158 | 0.823104 | 1.66E-53 | -1.69E-46 |
MS.gene051858 | MS.gene09158 | 0.806882 | 6.63E-50 | -1.69E-46 |
MS.gene052501 | MS.gene09158 | 0.820766 | 5.77E-53 | -1.69E-46 |
MS.gene052503 | MS.gene09158 | 0.824467 | 7.95E-54 | -1.69E-46 |
MS.gene052505 | MS.gene09158 | 0.828746 | 7.57E-55 | -1.69E-46 |
MS.gene052615 | MS.gene09158 | 0.802209 | 6.25E-49 | -1.69E-46 |
MS.gene052823 | MS.gene09158 | 0.816159 | 6.38E-52 | -1.69E-46 |
MS.gene052825 | MS.gene09158 | 0.825573 | 4.36E-54 | -1.69E-46 |
MS.gene052982 | MS.gene09158 | 0.829866 | 4.05E-55 | -1.69E-46 |
MS.gene053203 | MS.gene09158 | 0.852159 | 5.54E-61 | -1.69E-46 |
MS.gene053207 | MS.gene09158 | 0.854505 | 1.18E-61 | -1.69E-46 |
MS.gene053213 | MS.gene09158 | 0.81251 | 4.09E-51 | -1.69E-46 |
MS.gene053286 | MS.gene09158 | 0.808942 | 2.42E-50 | -1.69E-46 |
MS.gene053574 | MS.gene09158 | 0.810148 | 1.33E-50 | -1.69E-46 |
MS.gene054600 | MS.gene09158 | 0.820666 | 6.08E-53 | -1.69E-46 |
MS.gene054927 | MS.gene09158 | 0.86568 | 4.95E-65 | -1.69E-46 |
MS.gene055289 | MS.gene09158 | 0.817449 | 3.28E-52 | -1.69E-46 |
MS.gene055577 | MS.gene09158 | 0.843119 | 1.70E-58 | -1.69E-46 |
MS.gene056083 | MS.gene09158 | 0.818995 | 1.47E-52 | -1.69E-46 |
MS.gene056610 | MS.gene09158 | 0.82518 | 5.40E-54 | -1.69E-46 |
MS.gene056692 | MS.gene09158 | 0.80244 | 5.60E-49 | -1.69E-46 |
MS.gene056877 | MS.gene09158 | 0.810847 | 9.40E-51 | -1.69E-46 |
MS.gene057048 | MS.gene09158 | 0.800213 | 1.60E-48 | -1.69E-46 |
MS.gene057416 | MS.gene09158 | 0.80375 | 3.00E-49 | -1.69E-46 |
MS.gene057658 | MS.gene09158 | 0.84331 | 1.52E-58 | -1.69E-46 |
MS.gene05837 | MS.gene09158 | 0.819638 | 1.05E-52 | -1.69E-46 |
MS.gene058544 | MS.gene09158 | 0.815433 | 9.27E-52 | -1.69E-46 |
MS.gene058838 | MS.gene09158 | 0.817786 | 2.75E-52 | -1.69E-46 |
MS.gene05883 | MS.gene09158 | 0.82476 | 6.78E-54 | -1.69E-46 |
MS.gene059023 | MS.gene09158 | 0.836273 | 1.03E-56 | -1.69E-46 |
MS.gene05914 | MS.gene09158 | 0.800655 | 1.30E-48 | -1.69E-46 |
MS.gene059303 | MS.gene09158 | 0.816838 | 4.50E-52 | -1.69E-46 |
MS.gene059718 | MS.gene09158 | 0.841557 | 4.42E-58 | -1.69E-46 |
MS.gene059756 | MS.gene09158 | 0.806093 | 9.72E-50 | -1.69E-46 |
MS.gene059902 | MS.gene09158 | 0.808651 | 2.79E-50 | -1.69E-46 |
MS.gene06077 | MS.gene09158 | 0.804385 | 2.22E-49 | -1.69E-46 |
MS.gene06092 | MS.gene09158 | 0.844417 | 7.66E-59 | -1.69E-46 |
MS.gene061150 | MS.gene09158 | 0.809034 | 2.31E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09158.t1 | MTR_4g057685 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 9.45e-140 | 387 |
MS.gene09158.t1 | MTR_4g057685 | 98.925 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 2.06e-139 | 388 |
MS.gene09158.t1 | MTR_8g102980 | 33.775 | 151 | 69 | 6 | 29 | 175 | 86 | 209 | 8.16e-18 | 80.1 |
MS.gene09158.t1 | MTR_8g102980 | 33.775 | 151 | 69 | 6 | 29 | 175 | 86 | 209 | 9.13e-18 | 79.7 |
MS.gene09158.t1 | MTR_4g132270 | 29.605 | 152 | 80 | 4 | 29 | 178 | 16 | 142 | 8.32e-16 | 73.6 |
MS.gene09158.t1 | MTR_4g132270 | 29.605 | 152 | 80 | 4 | 29 | 178 | 39 | 165 | 1.09e-15 | 73.6 |
MS.gene09158.t1 | MTR_4g132260 | 30.921 | 152 | 78 | 5 | 29 | 178 | 16 | 142 | 1.31e-15 | 73.2 |
MS.gene09158.t1 | MTR_2g023500 | 30.872 | 149 | 76 | 5 | 31 | 177 | 24 | 147 | 1.37e-14 | 70.5 |
MS.gene09158.t1 | MTR_6g087120 | 33.113 | 151 | 70 | 7 | 29 | 175 | 87 | 210 | 1.55e-14 | 70.9 |
MS.gene09158.t1 | MTR_3g110185 | 30.921 | 152 | 70 | 6 | 31 | 176 | 562 | 684 | 1.64e-13 | 68.2 |
MS.gene09158.t1 | MTR_3g110185 | 26.667 | 150 | 79 | 5 | 29 | 174 | 690 | 812 | 1.91e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09158.t1 | AT1G08110 | 81.967 | 183 | 33 | 0 | 4 | 186 | 3 | 185 | 9.92e-109 | 308 |
MS.gene09158.t1 | AT1G08110 | 81.967 | 183 | 33 | 0 | 4 | 186 | 3 | 185 | 9.92e-109 | 308 |
MS.gene09158.t1 | AT1G08110 | 81.967 | 183 | 33 | 0 | 4 | 186 | 3 | 185 | 9.92e-109 | 308 |
MS.gene09158.t1 | AT1G08110 | 81.967 | 183 | 33 | 0 | 4 | 186 | 53 | 235 | 3.73e-108 | 309 |
MS.gene09158.t1 | AT1G67280 | 35.762 | 151 | 66 | 6 | 29 | 175 | 1 | 124 | 1.34e-18 | 80.9 |
MS.gene09158.t1 | AT1G67280 | 28.859 | 149 | 74 | 6 | 29 | 173 | 131 | 251 | 1.53e-11 | 61.6 |
MS.gene09158.t1 | AT1G67280 | 35.762 | 151 | 66 | 6 | 29 | 175 | 89 | 212 | 2.74e-18 | 81.3 |
MS.gene09158.t1 | AT1G67280 | 28.859 | 149 | 74 | 6 | 29 | 173 | 219 | 339 | 1.64e-11 | 62.4 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 1.40e-16 | 75.1 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 2.84e-16 | 75.1 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 2.84e-16 | 75.1 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 2.84e-16 | 75.1 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 2.84e-16 | 75.1 |
MS.gene09158.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 59 | 180 | 4.12e-16 | 75.1 |
Find 40 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGTTCAGCTTGTACTTTA+TGG | 0.231092 | 4.3:+43420294 | MS.gene09158:CDS |
GAAAGGGATAGCATTTATTA+AGG | 0.277714 | 4.3:+43426507 | MS.gene09158:CDS |
AATTCTGATCCTCGTGGTTT+TGG | 0.281200 | 4.3:+43420944 | MS.gene09158:CDS |
TTAAGGATCCTGATGGATAC+TGG | 0.291792 | 4.3:+43426524 | MS.gene09158:CDS |
AAGTTCAGCTTGTACTTTAT+GGG | 0.322056 | 4.3:+43420295 | MS.gene09158:CDS |
AAATCTTTCACATGCTTTGA+AGG | 0.328891 | 4.3:-43423578 | None:intergenic |
GTTTAGTTTGCTTAAGAGAT+TGG | 0.379480 | 4.3:+43420258 | MS.gene09158:intron |
AAAACAATTGGAAATGTAAC+AGG | 0.384667 | 4.3:+43426565 | MS.gene09158:CDS |
AGTTTGGACCTTTGCTCAAA+AGG | 0.403037 | 4.3:+43420778 | MS.gene09158:CDS |
GTTCTATCAACCGAGTTACT+TGG | 0.418891 | 4.3:-43420755 | None:intergenic |
AACTGTAGATGAAGCTACTA+AGG | 0.437049 | 4.3:+43419058 | MS.gene09158:CDS |
TTGTGATACCCTTTGAACTC+TGG | 0.470702 | 4.3:-43420917 | None:intergenic |
TCTACAGTTGCATGGAGACC+AGG | 0.474404 | 4.3:-43419044 | None:intergenic |
CTTGTACTTTATGGGGTATG+AGG | 0.487117 | 4.3:+43420303 | MS.gene09158:CDS |
ACTCGGTTGATAGAACAGTT+TGG | 0.493547 | 4.3:+43420762 | MS.gene09158:CDS |
ATTTCAATCCAGTATCCATC+AGG | 0.500386 | 4.3:-43426532 | None:intergenic |
TACAAGCTGAACTTCATCTC+AGG | 0.504945 | 4.3:-43420286 | None:intergenic |
AAAGTGATCCAGAGTTCAAA+GGG | 0.513681 | 4.3:+43420909 | MS.gene09158:CDS |
TTCGGAATCAAAGGAATCAC+CGG | 0.527144 | 4.3:+43419013 | MS.gene09158:CDS |
AATGGCTACTTCGGAATCAA+AGG | 0.533331 | 4.3:+43419004 | None:intergenic |
ATGTGAAAGATTTCAGAACC+TGG | 0.545629 | 4.3:+43423588 | MS.gene09158:CDS |
TGGAGACCAGGGTTGTTAGC+CGG | 0.553858 | 4.3:-43419032 | None:intergenic |
TAGCTTCATCTACAGTTGCA+TGG | 0.555738 | 4.3:-43419052 | None:intergenic |
GAAAGTGATCCAGAGTTCAA+AGG | 0.558602 | 4.3:+43420908 | MS.gene09158:CDS |
TCTTAACAAACTCAACTCCC+AGG | 0.559513 | 4.3:-43423606 | None:intergenic |
GCATTTATTAAGGATCCTGA+TGG | 0.563476 | 4.3:+43426517 | MS.gene09158:CDS |
AGTTCAGCTTGTACTTTATG+GGG | 0.564812 | 4.3:+43420296 | MS.gene09158:CDS |
TAAAGTAATATTCAGTAACT+GGG | 0.571275 | 4.3:+43420880 | MS.gene09158:intron |
GAATCACCGGCTAACAACCC+TGG | 0.584889 | 4.3:+43419026 | MS.gene09158:CDS |
CTTATGTTTACAGGACACAT+TGG | 0.591800 | 4.3:+43423538 | MS.gene09158:intron |
ATCTGAAGCTCCAAGTAACT+CGG | 0.594666 | 4.3:+43420745 | MS.gene09158:CDS |
TTTGTTAAGAAACCAGAGGA+TGG | 0.620597 | 4.3:+43423619 | MS.gene09158:CDS |
ACTGTAGATGAAGCTACTAA+GGG | 0.621301 | 4.3:+43419059 | MS.gene09158:CDS |
CTACAGTTGCATGGAGACCA+GGG | 0.624177 | 4.3:-43419043 | None:intergenic |
TGTGAAAGATTTCAGAACCT+GGG | 0.628860 | 4.3:+43423589 | MS.gene09158:CDS |
TGAGTTTGTTAAGAAACCAG+AGG | 0.656268 | 4.3:+43423615 | MS.gene09158:CDS |
GAGTTCAAAGGGTATCACAA+TGG | 0.683137 | 4.3:+43420920 | MS.gene09158:CDS |
AATGGCAATTCTGATCCTCG+TGG | 0.690634 | 4.3:+43420938 | MS.gene09158:CDS |
AAAGTAATATTCAGTAACTG+GGG | 0.695535 | 4.3:+43420881 | MS.gene09158:intron |
TATCACTTACCAAAACCACG+AGG | 0.836687 | 4.3:-43420953 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 43419005 | 43426600 | 43419005 | ID=MS.gene09158 |
chr4.3 | mRNA | 43419005 | 43426600 | 43419005 | ID=MS.gene09158.t1;Parent=MS.gene09158 |
chr4.3 | exon | 43419005 | 43419100 | 43419005 | ID=MS.gene09158.t1.exon1;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43419005 | 43419100 | 43419005 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43420025 | 43420086 | 43420025 | ID=MS.gene09158.t1.exon2;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43420025 | 43420086 | 43420025 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43420264 | 43420324 | 43420264 | ID=MS.gene09158.t1.exon3;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43420264 | 43420324 | 43420264 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43420740 | 43420819 | 43420740 | ID=MS.gene09158.t1.exon4;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43420740 | 43420819 | 43420740 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43420895 | 43420965 | 43420895 | ID=MS.gene09158.t1.exon5;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43420895 | 43420965 | 43420895 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43423551 | 43423640 | 43423551 | ID=MS.gene09158.t1.exon6;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43423551 | 43423640 | 43423551 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
chr4.3 | exon | 43426500 | 43426600 | 43426500 | ID=MS.gene09158.t1.exon7;Parent=MS.gene09158.t1 |
chr4.3 | CDS | 43426500 | 43426600 | 43426500 | ID=cds.MS.gene09158.t1;Parent=MS.gene09158.t1 |
Gene Sequence |
Protein sequence |