Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22750.t1 | ABD32712.1 | 83.5 | 556 | 79 | 3 | 1 | 543 | 81 | 636 | 3.80E-252 | 880.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22750.t1 | Q689G6 | 28.2 | 582 | 303 | 15 | 1 | 536 | 110 | 622 | 8.1e-33 | 143.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22750.t1 | Q2HTB9 | 83.5 | 556 | 79 | 3 | 1 | 543 | 81 | 636 | 2.8e-252 | 880.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22750.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene22750 | 0.813153 | 2.96E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene22750 | 0.83854 | 2.71E-57 | -1.69E-46 |
| MS.gene049633 | MS.gene22750 | 0.81369 | 2.25E-51 | -1.69E-46 |
| MS.gene049656 | MS.gene22750 | 0.800607 | 1.33E-48 | -1.69E-46 |
| MS.gene050170 | MS.gene22750 | 0.883899 | 3.03E-71 | -1.69E-46 |
| MS.gene050323 | MS.gene22750 | 0.89689 | 2.39E-76 | -1.69E-46 |
| MS.gene050496 | MS.gene22750 | 0.873921 | 1.01E-67 | -1.69E-46 |
| MS.gene050502 | MS.gene22750 | 0.846669 | 1.88E-59 | -1.69E-46 |
| MS.gene050697 | MS.gene22750 | 0.979708 | 1.45E-148 | -1.69E-46 |
| MS.gene05080 | MS.gene22750 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene22750 | 0.848611 | 5.49E-60 | -1.69E-46 |
| MS.gene050871 | MS.gene22750 | 0.851678 | 7.59E-61 | -1.69E-46 |
| MS.gene051268 | MS.gene22750 | 0.82925 | 5.72E-55 | -1.69E-46 |
| MS.gene051509 | MS.gene22750 | 0.812554 | 4.00E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene22750 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene051941 | MS.gene22750 | 0.835387 | 1.73E-56 | -1.69E-46 |
| MS.gene052066 | MS.gene22750 | 0.830977 | 2.17E-55 | -1.69E-46 |
| MS.gene052100 | MS.gene22750 | 0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene052822 | MS.gene22750 | 0.808906 | 2.46E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene22750 | 0.803451 | 3.46E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene22750 | 0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene22750 | 0.805535 | 1.27E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene22750 | 0.828707 | 7.74E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene22750 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene053505 | MS.gene22750 | 0.803641 | 3.16E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene22750 | 0.813791 | 2.14E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene22750 | 0.842331 | 2.76E-58 | -1.69E-46 |
| MS.gene05494 | MS.gene22750 | 0.836543 | 8.80E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene22750 | 0.814112 | 1.82E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene22750 | 0.816592 | 5.11E-52 | -1.69E-46 |
| MS.gene055776 | MS.gene22750 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene22750 | 0.869059 | 4.11E-66 | -1.69E-46 |
| MS.gene056166 | MS.gene22750 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene22750 | 0.901392 | 2.81E-78 | -1.69E-46 |
| MS.gene056504 | MS.gene22750 | 0.873216 | 1.75E-67 | -1.69E-46 |
| MS.gene057019 | MS.gene22750 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene22750 | 0.825151 | 5.48E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene22750 | 0.807172 | 5.76E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene22750 | 0.825716 | 4.03E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene22750 | 0.803866 | 2.84E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene22750 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene22750 | 0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene22750 | 0.819924 | 8.99E-53 | -1.69E-46 |
| MS.gene059703 | MS.gene22750 | -0.806229 | 9.10E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene22750 | 0.839114 | 1.92E-57 | -1.69E-46 |
| MS.gene06000 | MS.gene22750 | 0.865792 | 4.57E-65 | -1.69E-46 |
| MS.gene06027 | MS.gene22750 | 0.82409 | 9.74E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene22750 | 0.860106 | 2.60E-63 | -1.69E-46 |
| MS.gene06097 | MS.gene22750 | 0.839034 | 2.02E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene22750 | 0.855203 | 7.39E-62 | -1.69E-46 |
| MS.gene061044 | MS.gene22750 | -0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene061218 | MS.gene22750 | 0.860003 | 2.80E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22750.t1 | MTR_7g118260 | 88.398 | 543 | 36 | 3 | 1 | 543 | 81 | 596 | 0.0 | 977 |
| MS.gene22750.t1 | MTR_7g118260 | 88.382 | 482 | 36 | 2 | 62 | 543 | 49 | 510 | 0.0 | 861 |
| MS.gene22750.t1 | MTR_7g118260 | 93.602 | 422 | 27 | 0 | 122 | 543 | 5 | 426 | 0.0 | 820 |
| MS.gene22750.t1 | MTR_7g118260 | 93.810 | 420 | 26 | 0 | 124 | 543 | 140 | 559 | 0.0 | 818 |
| MS.gene22750.t1 | MTR_7g118260 | 59.167 | 120 | 42 | 3 | 1 | 120 | 81 | 193 | 1.51e-31 | 129 |
| MS.gene22750.t1 | MTR_8g024260 | 40.728 | 577 | 250 | 16 | 1 | 534 | 103 | 630 | 2.23e-90 | 290 |
| MS.gene22750.t1 | MTR_3g092780 | 33.621 | 580 | 306 | 19 | 1 | 530 | 123 | 673 | 6.57e-66 | 226 |
| MS.gene22750.t1 | MTR_3g092780 | 33.506 | 579 | 307 | 19 | 1 | 530 | 123 | 672 | 1.35e-65 | 226 |
| MS.gene22750.t1 | MTR_3g092780 | 33.333 | 567 | 284 | 17 | 1 | 530 | 123 | 632 | 7.10e-62 | 215 |
| MS.gene22750.t1 | MTR_3g092780 | 33.216 | 566 | 285 | 17 | 1 | 530 | 123 | 631 | 1.15e-61 | 214 |
| MS.gene22750.t1 | MTR_4g061360 | 67.273 | 55 | 18 | 0 | 1 | 55 | 156 | 210 | 2.32e-20 | 95.5 |
| MS.gene22750.t1 | MTR_4g061360 | 37.342 | 158 | 73 | 6 | 399 | 531 | 608 | 764 | 4.90e-16 | 82.0 |
| MS.gene22750.t1 | MTR_1g067110 | 67.273 | 55 | 18 | 0 | 1 | 55 | 152 | 206 | 2.70e-20 | 95.1 |
| MS.gene22750.t1 | MTR_1g067110 | 65.957 | 47 | 13 | 1 | 487 | 530 | 690 | 736 | 8.24e-12 | 68.6 |
| MS.gene22750.t1 | MTR_1g067110 | 67.273 | 55 | 18 | 0 | 1 | 55 | 152 | 206 | 3.04e-20 | 95.1 |
| MS.gene22750.t1 | MTR_3g037390 | 63.265 | 49 | 18 | 0 | 8 | 56 | 98 | 146 | 1.24e-15 | 80.1 |
| MS.gene22750.t1 | MTR_3g037390 | 60.000 | 50 | 20 | 0 | 484 | 533 | 494 | 543 | 1.83e-13 | 73.6 |
| MS.gene22750.t1 | MTR_4g108880 | 63.265 | 49 | 18 | 0 | 8 | 56 | 107 | 155 | 1.64e-15 | 80.1 |
| MS.gene22750.t1 | MTR_4g108880 | 64.000 | 50 | 18 | 0 | 484 | 533 | 501 | 550 | 8.28e-15 | 77.8 |
| MS.gene22750.t1 | MTR_1g067110 | 73.171 | 41 | 11 | 0 | 15 | 55 | 1 | 41 | 2.50e-15 | 79.3 |
| MS.gene22750.t1 | MTR_1g067110 | 65.957 | 47 | 13 | 1 | 487 | 530 | 525 | 571 | 6.45e-12 | 68.6 |
| MS.gene22750.t1 | MTR_3g037390 | 60.000 | 50 | 20 | 0 | 484 | 533 | 390 | 439 | 1.40e-13 | 73.6 |
| MS.gene22750.t1 | MTR_3g037390 | 64.286 | 42 | 15 | 0 | 15 | 56 | 1 | 42 | 2.87e-12 | 69.3 |
| MS.gene22750.t1 | MTR_1g032570 | 51.786 | 56 | 26 | 1 | 1 | 55 | 9 | 64 | 2.88e-11 | 66.2 |
| MS.gene22750.t1 | MTR_1g032570 | 59.574 | 47 | 19 | 0 | 9 | 55 | 87 | 133 | 3.41e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22750.t1 | AT5G24470 | 72.414 | 58 | 16 | 0 | 1 | 58 | 117 | 174 | 1.18e-24 | 108 |
| MS.gene22750.t1 | AT5G24470 | 61.111 | 72 | 26 | 1 | 463 | 532 | 482 | 553 | 2.64e-19 | 91.7 |
| MS.gene22750.t1 | AT2G46790 | 72.727 | 55 | 15 | 0 | 1 | 55 | 104 | 158 | 6.90e-24 | 105 |
| MS.gene22750.t1 | AT2G46790 | 72.727 | 55 | 15 | 0 | 1 | 55 | 104 | 158 | 8.01e-24 | 105 |
| MS.gene22750.t1 | AT2G46790 | 84.783 | 46 | 7 | 0 | 486 | 531 | 415 | 460 | 3.07e-18 | 88.2 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 4.24e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 4.24e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 4.24e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 6.38e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 46.154 | 104 | 52 | 1 | 427 | 530 | 385 | 484 | 2.25e-16 | 82.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 6.38e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 46.154 | 104 | 52 | 1 | 427 | 530 | 385 | 484 | 2.25e-16 | 82.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 6.38e-22 | 99.4 |
| MS.gene22750.t1 | AT5G60100 | 46.154 | 104 | 52 | 1 | 427 | 530 | 385 | 484 | 2.25e-16 | 82.4 |
| MS.gene22750.t1 | AT5G60100 | 70.909 | 55 | 16 | 0 | 1 | 55 | 131 | 185 | 1.17e-21 | 99.0 |
| MS.gene22750.t1 | AT5G60100 | 46.154 | 104 | 52 | 1 | 427 | 530 | 412 | 511 | 1.92e-16 | 82.8 |
| MS.gene22750.t1 | AT2G46670 | 84.783 | 46 | 7 | 0 | 486 | 531 | 130 | 175 | 9.85e-20 | 87.4 |
| MS.gene22750.t1 | AT5G02810 | 63.636 | 55 | 20 | 0 | 1 | 55 | 145 | 199 | 4.56e-19 | 91.7 |
| MS.gene22750.t1 | AT5G02810 | 74.468 | 47 | 12 | 0 | 484 | 530 | 665 | 711 | 1.03e-15 | 80.9 |
| MS.gene22750.t1 | AT2G46790 | 84.783 | 46 | 7 | 0 | 486 | 531 | 258 | 303 | 8.61e-19 | 87.8 |
| MS.gene22750.t1 | AT2G46790 | 84.783 | 46 | 7 | 0 | 486 | 531 | 258 | 303 | 8.61e-19 | 87.8 |
| MS.gene22750.t1 | AT2G46790 | 84.783 | 46 | 7 | 0 | 486 | 531 | 298 | 343 | 1.93e-18 | 87.4 |
| MS.gene22750.t1 | AT2G46790 | 75.610 | 41 | 10 | 0 | 15 | 55 | 1 | 41 | 1.55e-16 | 81.6 |
| MS.gene22750.t1 | AT5G02810 | 74.468 | 47 | 12 | 0 | 484 | 530 | 521 | 567 | 7.18e-16 | 81.3 |
| MS.gene22750.t1 | AT5G02810 | 65.217 | 46 | 16 | 0 | 10 | 55 | 10 | 55 | 1.09e-14 | 77.4 |
| MS.gene22750.t1 | AT5G61380 | 58.824 | 51 | 21 | 0 | 6 | 56 | 91 | 141 | 1.16e-14 | 77.4 |
| MS.gene22750.t1 | AT5G61380 | 64.000 | 50 | 18 | 0 | 484 | 533 | 529 | 578 | 7.89e-14 | 74.7 |
| MS.gene22750.t1 | AT3G16857 | 49.153 | 59 | 29 | 1 | 1 | 58 | 30 | 88 | 6.22e-12 | 68.6 |
| MS.gene22750.t1 | AT3G16857 | 49.153 | 59 | 29 | 1 | 1 | 58 | 100 | 158 | 9.72e-12 | 68.2 |
| MS.gene22750.t1 | AT3G16857 | 49.153 | 59 | 29 | 1 | 1 | 58 | 100 | 158 | 1.07e-11 | 68.2 |
Find 110 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTCTTTGTTGGAAATAA+AGG | 0.268310 | 7.3:+366619 | None:intergenic |
| CTTTCTTCAGTGGTAGGTTT+AGG | 0.287572 | 7.3:+367504 | None:intergenic |
| CAATTTGCATGATTGCTCTT+TGG | 0.310062 | 7.3:+367612 | None:intergenic |
| TCTTCAAATGCATGCTCAAT+GGG | 0.318207 | 7.3:-368692 | MS.gene22750:CDS |
| CGCCAAGTACAGGGTGAACT+TGG | 0.337409 | 7.3:-365665 | MS.gene22750:CDS |
| GGAACTTGTGGCAGCATGTC+TGG | 0.341325 | 7.3:-368626 | MS.gene22750:CDS |
| GCAGGAAAATATCACATATC+TGG | 0.343384 | 7.3:-366530 | MS.gene22750:CDS |
| TGCTGGAGCTATTGACTTGA+TGG | 0.350704 | 7.3:-367652 | MS.gene22750:CDS |
| TTGTTAGAGCTGCTTCTCTT+TGG | 0.353419 | 7.3:+366008 | None:intergenic |
| AGACAGATGCTATGACAAAA+AGG | 0.359785 | 7.3:-365966 | MS.gene22750:intron |
| GATTCATGAGAACTCTTTGT+TGG | 0.378222 | 7.3:+366610 | None:intergenic |
| GTACAACTTTGACCATTAGA+TGG | 0.381258 | 7.3:+366202 | None:intergenic |
| CACTATTCATAGAACTTTCA+AGG | 0.383146 | 7.3:+366074 | None:intergenic |
| GCTGAGTATAACCACGAAAC+TGG | 0.385036 | 7.3:-367956 | MS.gene22750:CDS |
| TGAATCTTTGTATTATTATG+AGG | 0.390909 | 7.3:+367705 | None:intergenic |
| CACTTCCGATAATAAGTCTA+TGG | 0.395541 | 7.3:-366443 | MS.gene22750:CDS |
| TCAAACTTGAAGAACTCTTC+AGG | 0.397337 | 7.3:+368032 | None:intergenic |
| ATGTTCCATAGACTTATTAT+CGG | 0.405466 | 7.3:+366438 | None:intergenic |
| ATTTCAACAGGTTTAATGCT+TGG | 0.410650 | 7.3:-367798 | MS.gene22750:CDS |
| CTAAGCTCATTCCTGCGAAC+TGG | 0.412499 | 7.3:+368648 | None:intergenic |
| TCGGAAGTGGCCCCGGTGGC+TGG | 0.413092 | 7.3:+366457 | None:intergenic |
| GCAGTTTGTTCGCCAAGTAC+AGG | 0.417594 | 7.3:-365675 | MS.gene22750:CDS |
| TAGAGCTGCTTCTCTTTGGC+TGG | 0.417856 | 7.3:+366012 | None:intergenic |
| GTCTTCAAATGCATGCTCAA+TGG | 0.427096 | 7.3:-368693 | MS.gene22750:CDS |
| CTTTGTATTATTATGAGGAC+TGG | 0.431448 | 7.3:+367710 | None:intergenic |
| GGGTGTGACAAAATTTCAAC+AGG | 0.435384 | 7.3:-367810 | MS.gene22750:CDS |
| CCCCAAGTTCACCCTGTACT+TGG | 0.437798 | 7.3:+365663 | None:intergenic |
| GAGGAAATACTTGCGGGAAA+TGG | 0.439122 | 7.3:+366328 | None:intergenic |
| ATGCATGACTCTCCATCTAA+TGG | 0.442942 | 7.3:-366214 | MS.gene22750:CDS |
| AGTGGTGTGGGTGAAGGCCT+AGG | 0.446712 | 7.3:-366145 | MS.gene22750:CDS |
| CTTGAATTCTTTCCAGCCAC+CGG | 0.447171 | 7.3:-366469 | MS.gene22750:CDS |
| TTGCAGTTATGGCAGCAGTA+TGG | 0.448329 | 7.3:-366650 | MS.gene22750:intron |
| AATATCACATATCTGGTGAT+TGG | 0.451094 | 7.3:-366523 | MS.gene22750:CDS |
| CACAGAAGCACTAGAATGAT+TGG | 0.453271 | 7.3:+368435 | None:intergenic |
| GAATGGGAGGAAATACTTGC+GGG | 0.457257 | 7.3:+366322 | None:intergenic |
| ATTGCTTTGATCGCAAGTAT+AGG | 0.461942 | 7.3:+366249 | None:intergenic |
| GACAGGCAGAGAACCGCCCC+CGG | 0.462179 | 7.3:-365706 | MS.gene22750:CDS |
| GAAAACCGTGATGAAGTGTT+AGG | 0.466999 | 7.3:-367750 | MS.gene22750:CDS |
| ATTTGCCTTTCTTCAGTGGT+AGG | 0.468067 | 7.3:+367498 | None:intergenic |
| TTGCTTCACCTGGTCAGTAT+TGG | 0.470685 | 7.3:+368009 | None:intergenic |
| ATAATAGCATCGAAAGCTGC+AGG | 0.477016 | 7.3:-367831 | MS.gene22750:CDS |
| CCAAGAAAACGCAGAAGCAT+TGG | 0.477432 | 7.3:+367464 | None:intergenic |
| TCGATGTTCAACGCACAATC+AGG | 0.479414 | 7.3:-366400 | MS.gene22750:CDS |
| GAACAAACTGCCCTTTCACC+CGG | 0.480092 | 7.3:+365687 | None:intergenic |
| GTTATATACCTCCAGTTTCG+TGG | 0.481995 | 7.3:+367945 | None:intergenic |
| CATAGACTTATTATCGGAAG+TGG | 0.483143 | 7.3:+366444 | None:intergenic |
| AATGCCCCTTCAGCTATTGT+AGG | 0.487039 | 7.3:-366106 | MS.gene22750:CDS |
| TTGAATTCTTTCCAGCCACC+GGG | 0.489831 | 7.3:-366468 | MS.gene22750:CDS |
| TATCTGGTGATTGGTCAGTC+TGG | 0.490312 | 7.3:-366514 | MS.gene22750:CDS |
| AATACTACTCATCAGTATGA+TGG | 0.494147 | 7.3:-366565 | MS.gene22750:CDS |
| TAGAATTAACTTGCTTCACC+TGG | 0.498379 | 7.3:+367999 | None:intergenic |
| CGTTATGACTCTCCGCGTCA+TGG | 0.509235 | 7.3:+366170 | None:intergenic |
| GATCTAGAAGACCATTCTGC+TGG | 0.510166 | 7.3:-367669 | MS.gene22750:CDS |
| AACAAACTGCCCTTTCACCC+GGG | 0.514303 | 7.3:+365688 | None:intergenic |
| AATCAGGCATGCATCCTAGT+TGG | 0.515363 | 7.3:-366384 | MS.gene22750:CDS |
| CAGTTCGCAGGAATGAGCTT+AGG | 0.516350 | 7.3:-368647 | MS.gene22750:CDS |
| TACAGGTCCGATATGAAAGC+CGG | 0.519302 | 7.3:-365733 | MS.gene22750:intron |
| TAGGCCTTCACCCACACCAC+TGG | 0.520612 | 7.3:+366147 | None:intergenic |
| TTCCATCACTTACGCTGCCT+AGG | 0.525766 | 7.3:+366128 | None:intergenic |
| TTAATTCTATCAAATATGAA+AGG | 0.528745 | 7.3:-367985 | MS.gene22750:CDS |
| AAAATAATCTCAGTAGCCTC+TGG | 0.528901 | 7.3:+365631 | None:intergenic |
| GAGTCATAACGCCAGTGGTG+TGG | 0.529153 | 7.3:-366158 | MS.gene22750:CDS |
| ATATGAAAGCCGGAAAAGAC+AGG | 0.529638 | 7.3:-365723 | MS.gene22750:CDS |
| TTCTTGCCTACAATAGCTGA+AGG | 0.531323 | 7.3:+366100 | None:intergenic |
| GCCAAGTACAGGGTGAACTT+GGG | 0.533640 | 7.3:-365664 | MS.gene22750:CDS |
| TTCTCATTAAACCAGTTCGC+AGG | 0.537821 | 7.3:-368659 | MS.gene22750:CDS |
| AACGCCAGTGGTGTGGGTGA+AGG | 0.538842 | 7.3:-366151 | MS.gene22750:CDS |
| CAATCATTCTAGTGCTTCTG+TGG | 0.540350 | 7.3:-368434 | MS.gene22750:CDS |
| CTAAACCTACCACTGAAGAA+AGG | 0.540787 | 7.3:-367503 | MS.gene22750:CDS |
| GCAAATTGTAGTTTCAGTGA+TGG | 0.541612 | 7.3:-367597 | MS.gene22750:CDS |
| TTGTGTATCAAAATCAAACT+TGG | 0.544194 | 7.3:+367566 | None:intergenic |
| CAGTTTGTTCGCCAAGTACA+GGG | 0.548311 | 7.3:-365674 | MS.gene22750:CDS |
| AGTCATAACGCCAGTGGTGT+GGG | 0.549753 | 7.3:-366157 | MS.gene22750:CDS |
| TCTTTACAAAGAGATTCTCC+TGG | 0.549770 | 7.3:-367534 | MS.gene22750:CDS |
| CAATATTTGCCTTTCTTCAG+TGG | 0.550440 | 7.3:+367494 | None:intergenic |
| CTTATTATCGGAAGTGGCCC+CGG | 0.559482 | 7.3:+366450 | None:intergenic |
| TGTATCAAAATCAAACTTGG+CGG | 0.561864 | 7.3:+367569 | None:intergenic |
| TTCTCAAGATTCAGTTAGCA+CGG | 0.563846 | 7.3:-368715 | MS.gene22750:CDS |
| CTCAGAACCTCATCACTGGT+TGG | 0.564050 | 7.3:-366281 | MS.gene22750:CDS |
| TAATTCTATCAAATATGAAA+GGG | 0.564328 | 7.3:-367984 | MS.gene22750:CDS |
| TGAATAGTGATCACCATGAC+GGG | 0.566391 | 7.3:-366060 | MS.gene22750:CDS |
| GGCCTAGGCAGCGTAAGTGA+TGG | 0.576730 | 7.3:-366130 | MS.gene22750:CDS |
| AGTCAATAGCTCCAGCAGAA+TGG | 0.578827 | 7.3:+367658 | None:intergenic |
| CTTGCCTACAATAGCTGAAG+GGG | 0.579471 | 7.3:+366102 | None:intergenic |
| ACAAACTGCCCTTTCACCCG+GGG | 0.585922 | 7.3:+365689 | None:intergenic |
| AGAACTCAGAACCTCATCAC+TGG | 0.587454 | 7.3:-366285 | MS.gene22750:CDS |
| TCTTGCCTACAATAGCTGAA+GGG | 0.592508 | 7.3:+366101 | None:intergenic |
| TTGTGTCTCTAAGCCCGTCA+TGG | 0.597875 | 7.3:+366047 | None:intergenic |
| CCAAGTACAGGGTGAACTTG+GGG | 0.598254 | 7.3:-365663 | MS.gene22750:CDS |
| AACTTGAAGAACTCTTCAGG+TGG | 0.599681 | 7.3:+368035 | None:intergenic |
| ATGAATAGTGATCACCATGA+CGG | 0.601535 | 7.3:-366061 | MS.gene22750:CDS |
| TTTAATAACATACTTATGAG+AGG | 0.605973 | 7.3:+368821 | None:intergenic |
| GTAGGTTTAGGTGAGATGCC+AGG | 0.609368 | 7.3:+367516 | None:intergenic |
| GCTTTGATCGCAAGTATAGG+TGG | 0.619142 | 7.3:+366252 | None:intergenic |
| CTGTTCCTAACACTTCATCA+CGG | 0.623164 | 7.3:+367745 | None:intergenic |
| AAGTTTGACCAATACTGACC+AGG | 0.628089 | 7.3:-368017 | MS.gene22750:CDS |
| GGAATGAGCTTAGGAACTTG+TGG | 0.628795 | 7.3:-368638 | MS.gene22750:CDS |
| TATCAAATATGAAAGGGAGT+CGG | 0.629440 | 7.3:-367978 | MS.gene22750:CDS |
| GCATCATCCAACCAGTGATG+AGG | 0.630119 | 7.3:+366274 | None:intergenic |
| GCATTCAATATATTTGTGCG+TGG | 0.632838 | 7.3:+368408 | None:intergenic |
| GGAATGGGAGGAAATACTTG+CGG | 0.634886 | 7.3:+366321 | None:intergenic |
| TAATAGCATCGAAAGCTGCA+GGG | 0.660310 | 7.3:-367830 | MS.gene22750:CDS |
| ACTTGAAGAACTCTTCAGGT+GGG | 0.661573 | 7.3:+368036 | None:intergenic |
| ATTATCGGAAGTGGCCCCGG+TGG | 0.665259 | 7.3:+366453 | None:intergenic |
| CTTCAAATGCATGCTCAATG+GGG | 0.668890 | 7.3:-368691 | MS.gene22750:CDS |
| GAGTATAACCACGAAACTGG+AGG | 0.676593 | 7.3:-367953 | MS.gene22750:intron |
| GCGGAGAGTCATAACGCCAG+TGG | 0.687526 | 7.3:-366163 | MS.gene22750:CDS |
| TGAATTCTTTCCAGCCACCG+GGG | 0.688194 | 7.3:-366467 | MS.gene22750:CDS |
| CAAACTGCCCTTTCACCCGG+GGG | 0.705042 | 7.3:+365690 | None:intergenic |
| CTTGGGGTAGCTGAAACCAG+AGG | 0.735170 | 7.3:-365647 | MS.gene22750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGAAAAAAAAAGAAT+GGG | - | chr7.3:367435-367454 | MS.gene22750:intron | 10.0% |
| !! | ATAAATACATATTATCTACT+AGG | + | chr7.3:367680-367699 | None:intergenic | 15.0% |
| !! | ATGAATAAATAAATACAAGT+TGG | + | chr7.3:365960-365979 | None:intergenic | 15.0% |
| !! | TAATTCTATCAAATATGAAA+GGG | - | chr7.3:366507-366526 | MS.gene22750:CDS | 15.0% |
| !! | TTAATTCTATCAAATATGAA+AGG | - | chr7.3:366506-366525 | MS.gene22750:CDS | 15.0% |
| !!! | ATAAAAAAATATTTCTAGAG+TGG | + | chr7.3:368589-368608 | None:intergenic | 15.0% |
| !!! | ATTTTATTATTAACATCTCT+TGG | + | chr7.3:367650-367669 | None:intergenic | 15.0% |
| !!! | CTTTTTAGAAAAAAAAAGAA+TGG | - | chr7.3:367434-367453 | MS.gene22750:intron | 15.0% |
| !!! | GATTTATATTTTATTGTCTT+TGG | - | chr7.3:367317-367336 | MS.gene22750:intron | 15.0% |
| !!! | TTTTAGAAAAAAAAAGAATG+GGG | - | chr7.3:367436-367455 | MS.gene22750:intron | 15.0% |
| !! | ACATATCTAACAAATAACAA+TGG | + | chr7.3:366183-366202 | None:intergenic | 20.0% |
| !! | AGAACATTAATAATGAAATC+CGG | + | chr7.3:366252-366271 | None:intergenic | 20.0% |
| !! | GTCAATAACTAACAAAATAA+GGG | + | chr7.3:366607-366626 | None:intergenic | 20.0% |
| !! | TGAATCTTTGTATTATTATG+AGG | + | chr7.3:366789-366808 | None:intergenic | 20.0% |
| !! | TGTCAATAACTAACAAAATA+AGG | + | chr7.3:366608-366627 | None:intergenic | 20.0% |
| !! | TTTAATAACATACTTATGAG+AGG | + | chr7.3:365673-365692 | None:intergenic | 20.0% |
| !!! | AATGTTGTTATATTTTGAGA+AGG | + | chr7.3:365989-366008 | None:intergenic | 20.0% |
| !!! | ATTGCTCAAATTTATTTTAC+AGG | - | chr7.3:368741-368760 | MS.gene22750:intron | 20.0% |
| !!! | TAAATAAATACAAGTTGGAT+TGG | + | chr7.3:365955-365974 | None:intergenic | 20.0% |
| !!! | TTTGAGTTGATTTATCAATA+TGG | - | chr7.3:368621-368640 | MS.gene22750:CDS | 20.0% |
| ! | ACCAAAATAACAGTTATCTT+TGG | - | chr7.3:367162-367181 | MS.gene22750:intron | 25.0% |
| ! | ATGTTCCATAGACTTATTAT+CGG | + | chr7.3:368056-368075 | None:intergenic | 25.0% |
| ! | GCAGTTTGTATGTTAAAAAA+AGG | + | chr7.3:366349-366368 | None:intergenic | 25.0% |
| ! | TAAATACATGGAAAATATGC+AGG | - | chr7.3:366426-366445 | MS.gene22750:CDS | 25.0% |
| ! | TCAGTATCAATAATTGTGTA+CGG | - | chr7.3:367760-367779 | MS.gene22750:CDS | 25.0% |
| ! | TTACACTTTCAATCAATGTT+TGG | - | chr7.3:366274-366293 | MS.gene22750:CDS | 25.0% |
| ! | TTCATATGATATCACGAATT+AGG | + | chr7.3:367275-367294 | None:intergenic | 25.0% |
| ! | TTGTGTATCAAAATCAAACT+TGG | + | chr7.3:366928-366947 | None:intergenic | 25.0% |
| ! | TTTGTATATCTGTCTCTAAT+CGG | - | chr7.3:367700-367719 | MS.gene22750:CDS | 25.0% |
| !!! | ACCAAAGATAACTGTTATTT+TGG | + | chr7.3:367166-367185 | None:intergenic | 25.0% |
| !!! | ATCAGTGTTTTTAGTAAGTT+TGG | - | chr7.3:368645-368664 | MS.gene22750:CDS | 25.0% |
| AAAAAAAAAGAATGGGGAAG+GGG | - | chr7.3:367442-367461 | MS.gene22750:intron | 30.0% | |
| AAAATTCCCATTTGCAGTTA+TGG | - | chr7.3:367830-367849 | MS.gene22750:CDS | 30.0% | |
| AATACTACTCATCAGTATGA+TGG | - | chr7.3:367926-367945 | MS.gene22750:intron | 30.0% | |
| AATATCACATATCTGGTGAT+TGG | - | chr7.3:367968-367987 | MS.gene22750:CDS | 30.0% | |
| ACATCATCAAGTTTATTCTG+TGG | + | chr7.3:366013-366032 | None:intergenic | 30.0% | |
| AGAAAAAAAAAGAATGGGGA+AGG | - | chr7.3:367440-367459 | MS.gene22750:intron | 30.0% | |
| ATATGATATCACGAATTAGG+TGG | + | chr7.3:367272-367291 | None:intergenic | 30.0% | |
| ATGAGGAATTGAGGATATAT+AGG | + | chr7.3:365731-365750 | None:intergenic | 30.0% | |
| ATGCACTCAAAAAATTAGTG+AGG | - | chr7.3:366102-366121 | MS.gene22750:CDS | 30.0% | |
| ATTAATAATGAAATCCGGTC+AGG | + | chr7.3:366247-366266 | None:intergenic | 30.0% | |
| ATTTCAACAGGTTTAATGCT+TGG | - | chr7.3:366693-366712 | MS.gene22750:intron | 30.0% | |
| CACTATTCATAGAACTTTCA+AGG | + | chr7.3:368420-368439 | None:intergenic | 30.0% | |
| CTTTGTATTATTATGAGGAC+TGG | + | chr7.3:366784-366803 | None:intergenic | 30.0% | |
| GAAAAAAAAAGAATGGGGAA+GGG | - | chr7.3:367441-367460 | MS.gene22750:intron | 30.0% | |
| GAACTCTTTGTTGGAAATAA+AGG | + | chr7.3:367875-367894 | None:intergenic | 30.0% | |
| GTGTTTGAGTGAAATTTAGA+TGG | + | chr7.3:366153-366172 | None:intergenic | 30.0% | |
| TAGTAATCTCAAACATGTCT+AGG | - | chr7.3:368688-368707 | MS.gene22750:CDS | 30.0% | |
| TATCAAATATGAAAGGGAGT+CGG | - | chr7.3:366513-366532 | MS.gene22750:CDS | 30.0% | |
| TGAAGCTGATAGTAAATACA+TGG | - | chr7.3:366414-366433 | MS.gene22750:CDS | 30.0% | |
| TGATGGAAAAAAACAAAAGC+AGG | - | chr7.3:367943-367962 | MS.gene22750:intron | 30.0% | |
| TGTATCAAAATCAAACTTGG+CGG | + | chr7.3:366925-366944 | None:intergenic | 30.0% | |
| TTACTATCAGCTTCAGAAAA+TGG | + | chr7.3:366409-366428 | None:intergenic | 30.0% | |
| TTGAGAGACAGAAGATATAT+TGG | - | chr7.3:367374-367393 | MS.gene22750:intron | 30.0% | |
| TTGTATATCTGTCTCTAATC+GGG | - | chr7.3:367701-367720 | MS.gene22750:CDS | 30.0% | |
| !! | GAATGTTTTTGCAATTGTGA+TGG | + | chr7.3:365651-365670 | None:intergenic | 30.0% |
| !! | TGTTATATTTTGAGAAGGCA+TGG | + | chr7.3:365984-366003 | None:intergenic | 30.0% |
| !!! | TCTTTTTGGAACACTGATTT+TGG | + | chr7.3:368136-368155 | None:intergenic | 30.0% |
| AGACAGATGCTATGACAAAA+AGG | - | chr7.3:368525-368544 | MS.gene22750:intron | 35.0% | |
| AGCATTCACATACTTCCAAA+AGG | + | chr7.3:367578-367597 | None:intergenic | 35.0% | |
| ATGAATAGTGATCACCATGA+CGG | - | chr7.3:368430-368449 | MS.gene22750:CDS | 35.0% | |
| ATTGCTTTGATCGCAAGTAT+AGG | + | chr7.3:368245-368264 | None:intergenic | 35.0% | |
| CAATATTTGCCTTTCTTCAG+TGG | + | chr7.3:367000-367019 | None:intergenic | 35.0% | |
| CAATTTGCATGATTGCTCTT+TGG | + | chr7.3:366882-366901 | None:intergenic | 35.0% | |
| CACTTCCGATAATAAGTCTA+TGG | - | chr7.3:368048-368067 | MS.gene22750:intron | 35.0% | |
| CATAGACTTATTATCGGAAG+TGG | + | chr7.3:368050-368069 | None:intergenic | 35.0% | |
| CTAAAACAACACAGAGAACA+TGG | - | chr7.3:367295-367314 | MS.gene22750:intron | 35.0% | |
| GATTCATGAGAACTCTTTGT+TGG | + | chr7.3:367884-367903 | None:intergenic | 35.0% | |
| GCAAATTGTAGTTTCAGTGA+TGG | - | chr7.3:366894-366913 | MS.gene22750:intron | 35.0% | |
| GCAGGAAAATATCACATATC+TGG | - | chr7.3:367961-367980 | MS.gene22750:CDS | 35.0% | |
| GCATTCAATATATTTGTGCG+TGG | + | chr7.3:366086-366105 | None:intergenic | 35.0% | |
| GTACAACTTTGACCATTAGA+TGG | + | chr7.3:368292-368311 | None:intergenic | 35.0% | |
| TCAAACTTGAAGAACTCTTC+AGG | + | chr7.3:366462-366481 | None:intergenic | 35.0% | |
| TCTCAGAAATAGTGATAGCA+TGG | + | chr7.3:368562-368581 | None:intergenic | 35.0% | |
| TCTTCAAATGCATGCTCAAT+GGG | - | chr7.3:365799-365818 | MS.gene22750:intron | 35.0% | |
| TCTTTACAAAGAGATTCTCC+TGG | - | chr7.3:366957-366976 | MS.gene22750:intron | 35.0% | |
| TGTAACAGCATAAACAAGAC+CGG | + | chr7.3:367227-367246 | None:intergenic | 35.0% | |
| TTCTCAAGATTCAGTTAGCA+CGG | - | chr7.3:365776-365795 | MS.gene22750:intron | 35.0% | |
| ! | AAATGGTGATGTAGAAGTGA+AGG | + | chr7.3:366392-366411 | None:intergenic | 35.0% |
| ! | ACAGTTAACTTTTACCTGAC+CGG | - | chr7.3:366230-366249 | MS.gene22750:CDS | 35.0% |
| ! | ACATGAAGAAGAAGAAGTAC+AGG | + | chr7.3:365702-365721 | None:intergenic | 35.0% |
| ! | GAAATGGAGAACTCTCTTTT+TGG | + | chr7.3:368150-368169 | None:intergenic | 35.0% |
| ! | TGACAAATTTTACCACCAGT+TGG | + | chr7.3:367348-367367 | None:intergenic | 35.0% |
| !! | TAGAATTAACTTGCTTCACC+TGG | + | chr7.3:366495-366514 | None:intergenic | 35.0% |
| !!! | CTGACTTTTAGGATTGGAAT+GGG | + | chr7.3:368188-368207 | None:intergenic | 35.0% |
| !!! | TACTAGTTTTTACCATGACG+CGG | - | chr7.3:368309-368328 | MS.gene22750:intron | 35.0% |
| !!! | TCTGACTTTTAGGATTGGAA+TGG | + | chr7.3:368189-368208 | None:intergenic | 35.0% |
| !!! | TGAGTTCTGACTTTTAGGAT+TGG | + | chr7.3:368194-368213 | None:intergenic | 35.0% |
| AACTTGAAGAACTCTTCAGG+TGG | + | chr7.3:366459-366478 | None:intergenic | 40.0% | |
| AAGTTTGACCAATACTGACC+AGG | - | chr7.3:366474-366493 | MS.gene22750:CDS | 40.0% | |
| ACAGAGTTTGAATCTCACCA+GGG | + | chr7.3:367513-367532 | None:intergenic | 40.0% | |
| ACTTGAAGAACTCTTCAGGT+GGG | + | chr7.3:366458-366477 | None:intergenic | 40.0% | |
| ATATGAAAGCCGGAAAAGAC+AGG | - | chr7.3:368768-368787 | MS.gene22750:intron | 40.0% | |
| ATGCATGACTCTCCATCTAA+TGG | - | chr7.3:368277-368296 | MS.gene22750:intron | 40.0% | |
| ATTTGCCTTTCTTCAGTGGT+AGG | + | chr7.3:366996-367015 | None:intergenic | 40.0% | |
| CAATCATTCTAGTGCTTCTG+TGG | - | chr7.3:366057-366076 | MS.gene22750:CDS | 40.0% | |
| CAGAAATAGTGATAGCATGG+TGG | + | chr7.3:368559-368578 | None:intergenic | 40.0% | |
| CTAAACCTACCACTGAAGAA+AGG | - | chr7.3:366988-367007 | MS.gene22750:intron | 40.0% | |
| CTGTTCCTAACACTTCATCA+CGG | + | chr7.3:366749-366768 | None:intergenic | 40.0% | |
| CTTCAAATGCATGCTCAATG+GGG | - | chr7.3:365800-365819 | MS.gene22750:intron | 40.0% | |
| CTTTCTTCAGTGGTAGGTTT+AGG | + | chr7.3:366990-367009 | None:intergenic | 40.0% | |
| GAAATTTAGATGGCGTGCAT+AGG | + | chr7.3:366143-366162 | None:intergenic | 40.0% | |
| GAAATTTCCCTCAAGTTTGC+AGG | + | chr7.3:366327-366346 | None:intergenic | 40.0% | |
| GACATCACTGCAATACATGA+TGG | + | chr7.3:365756-365775 | None:intergenic | 40.0% | |
| GGGTGTGACAAAATTTCAAC+AGG | - | chr7.3:366681-366700 | MS.gene22750:intron | 40.0% | |
| GTAACAGCATAAACAAGACC+GGG | + | chr7.3:367226-367245 | None:intergenic | 40.0% | |
| GTCTTCAAATGCATGCTCAA+TGG | - | chr7.3:365798-365817 | MS.gene22750:intron | 40.0% | |
| GTTATATACCTCCAGTTTCG+TGG | + | chr7.3:366549-366568 | None:intergenic | 40.0% | |
| TCTTGCCTACAATAGCTGAA+GGG | + | chr7.3:368393-368412 | None:intergenic | 40.0% | |
| TGAATAGTGATCACCATGAC+GGG | - | chr7.3:368431-368450 | MS.gene22750:CDS | 40.0% | |
| TTCTCATTAAACCAGTTCGC+AGG | - | chr7.3:365832-365851 | MS.gene22750:intron | 40.0% | |
| TTCTTGCCTACAATAGCTGA+AGG | + | chr7.3:368394-368413 | None:intergenic | 40.0% | |
| TTGTTAGAGCTGCTTCTCTT+TGG | + | chr7.3:368486-368505 | None:intergenic | 40.0% | |
| ! | AGAAGTGAAGGTACAAGAGT+TGG | + | chr7.3:366380-366399 | None:intergenic | 40.0% |
| ! | ATAATAGCATCGAAAGCTGC+AGG | - | chr7.3:366660-366679 | MS.gene22750:intron | 40.0% |
| ! | ATGATGGTGATGAGGAATTG+AGG | + | chr7.3:365740-365759 | None:intergenic | 40.0% |
| ! | CATGATTTTTACCCCTTTCC+CGG | - | chr7.3:367205-367224 | MS.gene22750:intron | 40.0% |
| ! | GAAAACCGTGATGAAGTGTT+AGG | - | chr7.3:366741-366760 | MS.gene22750:intron | 40.0% |
| ! | GTCTTTTCCGGCTTTCATAT+CGG | + | chr7.3:368768-368787 | None:intergenic | 40.0% |
| ! | TAATAGCATCGAAAGCTGCA+GGG | - | chr7.3:366661-366680 | MS.gene22750:intron | 40.0% |
| ! | TGCAATACATGATGGTGATG+AGG | + | chr7.3:365748-365767 | None:intergenic | 40.0% |
| !! | CACAGAAGCACTAGAATGAT+TGG | + | chr7.3:366059-366078 | None:intergenic | 40.0% |
| !!! | ACTGATTTTGGTGTCCAACT+AGG | + | chr7.3:368124-368143 | None:intergenic | 40.0% |
| !!! | ACTTTTAGGATTGGAATGGG+AGG | + | chr7.3:368185-368204 | None:intergenic | 40.0% |
| !!! | GGTTCTGAGTTCTGACTTTT+AGG | + | chr7.3:368199-368218 | None:intergenic | 40.0% |
| !!! | GTTGAGAGCTCTTGTTTTGT+TGG | - | chr7.3:367733-367752 | MS.gene22750:CDS | 40.0% |
| AATCAGGCATGCATCCTAGT+TGG | - | chr7.3:368107-368126 | MS.gene22750:intron | 45.0% | |
| AATGCCCCTTCAGCTATTGT+AGG | - | chr7.3:368385-368404 | MS.gene22750:CDS | 45.0% | |
| ACTCTGTCTCGAGGTTATAC+AGG | - | chr7.3:367526-367545 | MS.gene22750:CDS | 45.0% | |
| ACTGCTGCCATAACTGCAAA+TGG | + | chr7.3:367840-367859 | None:intergenic | 45.0% | |
| AGAACTCAGAACCTCATCAC+TGG | - | chr7.3:368206-368225 | MS.gene22750:intron | 45.0% | |
| AGCATAAACAAGACCGGGAA+AGG | + | chr7.3:367221-367240 | None:intergenic | 45.0% | |
| AGTCAATAGCTCCAGCAGAA+TGG | + | chr7.3:366836-366855 | None:intergenic | 45.0% | |
| CACCAGGGACAGTTGTAATA+TGG | + | chr7.3:367498-367517 | None:intergenic | 45.0% | |
| CATAAACAAGACCGGGAAAG+GGG | + | chr7.3:367219-367238 | None:intergenic | 45.0% | |
| CTGCTGCCATAACTGCAAAT+GGG | + | chr7.3:367839-367858 | None:intergenic | 45.0% | |
| CTTGAATTCTTTCCAGCCAC+CGG | - | chr7.3:368022-368041 | MS.gene22750:CDS | 45.0% | |
| CTTGCCTACAATAGCTGAAG+GGG | + | chr7.3:368392-368411 | None:intergenic | 45.0% | |
| GAATGGGAGGAAATACTTGC+GGG | + | chr7.3:368172-368191 | None:intergenic | 45.0% | |
| GACAGAGTTTGAATCTCACC+AGG | + | chr7.3:367514-367533 | None:intergenic | 45.0% | |
| GACCATATTACAACTGTCCC+TGG | - | chr7.3:367493-367512 | MS.gene22750:CDS | 45.0% | |
| GAGATTCAAACTCTGTCTCG+AGG | - | chr7.3:367517-367536 | MS.gene22750:CDS | 45.0% | |
| GAGGAAATACTTGCGGGAAA+TGG | + | chr7.3:368166-368185 | None:intergenic | 45.0% | |
| GAGTATAACCACGAAACTGG+AGG | - | chr7.3:366538-366557 | MS.gene22750:CDS | 45.0% | |
| GATCTAGAAGACCATTCTGC+TGG | - | chr7.3:366822-366841 | MS.gene22750:intron | 45.0% | |
| GCATAAACAAGACCGGGAAA+GGG | + | chr7.3:367220-367239 | None:intergenic | 45.0% | |
| GCTGAGTATAACCACGAAAC+TGG | - | chr7.3:366535-366554 | MS.gene22750:CDS | 45.0% | |
| GCTTTGATCGCAAGTATAGG+TGG | + | chr7.3:368242-368261 | None:intergenic | 45.0% | |
| GGAATGAGCTTAGGAACTTG+TGG | - | chr7.3:365853-365872 | MS.gene22750:intron | 45.0% | |
| GGAATGGGAGGAAATACTTG+CGG | + | chr7.3:368173-368192 | None:intergenic | 45.0% | |
| GTTTGGAAACTTCTACAGCG+TGG | - | chr7.3:368662-368681 | MS.gene22750:CDS | 45.0% | |
| TACAGGTCCGATATGAAAGC+CGG | - | chr7.3:368758-368777 | MS.gene22750:intron | 45.0% | |
| TCGATGTTCAACGCACAATC+AGG | - | chr7.3:368091-368110 | MS.gene22750:intron | 45.0% | |
| TTGAATTCTTTCCAGCCACC+GGG | - | chr7.3:368023-368042 | MS.gene22750:CDS | 45.0% | |
| TTGCAGTTATGGCAGCAGTA+TGG | - | chr7.3:367841-367860 | MS.gene22750:CDS | 45.0% | |
| TTGCTTCACCTGGTCAGTAT+TGG | + | chr7.3:366485-366504 | None:intergenic | 45.0% | |
| ! | CAGTTTGTTCGCCAAGTACA+GGG | - | chr7.3:368817-368836 | MS.gene22750:intron | 45.0% |
| ! | CCAAGAAAACGCAGAAGCAT+TGG | + | chr7.3:367030-367049 | None:intergenic | 45.0% |
| ! | CCAATGCTTCTGCGTTTTCT+TGG | - | chr7.3:367027-367046 | MS.gene22750:intron | 45.0% |
| ! | TATCTGGTGATTGGTCAGTC+TGG | - | chr7.3:367977-367996 | MS.gene22750:CDS | 45.0% |
| !! | TGCTGGAGCTATTGACTTGA+TGG | - | chr7.3:366839-366858 | MS.gene22750:intron | 45.0% |
| !! | TTGTCTTTGGAAGCACCAAC+TGG | - | chr7.3:367330-367349 | MS.gene22750:intron | 45.0% |
| !!! | AGAAATATTTTTTTATTATA+GGG | - | chr7.3:368593-368612 | MS.gene22750:CDS | 5.0% |
| !!! | TAGAAATATTTTTTTATTAT+AGG | - | chr7.3:368592-368611 | MS.gene22750:CDS | 5.0% |
| AACAAACTGCCCTTTCACCC+GGG | + | chr7.3:368806-368825 | None:intergenic | 50.0% | |
| AGTCATAACGCCAGTGGTGT+GGG | - | chr7.3:368334-368353 | MS.gene22750:intron | 50.0% | |
| CAGTTCGCAGGAATGAGCTT+AGG | - | chr7.3:365844-365863 | MS.gene22750:intron | 50.0% | |
| CCAAGTACAGGGTGAACTTG+GGG | - | chr7.3:368828-368847 | MS.gene22750:intron | 50.0% | |
| CCACTCTCCTGCAAACTTGA+GGG | - | chr7.3:366317-366336 | MS.gene22750:CDS | 50.0% | |
| CTAAGCTCATTCCTGCGAAC+TGG | + | chr7.3:365846-365865 | None:intergenic | 50.0% | |
| CTCAGAACCTCATCACTGGT+TGG | - | chr7.3:368210-368229 | MS.gene22750:intron | 50.0% | |
| CTTATTATCGGAAGTGGCCC+CGG | + | chr7.3:368044-368063 | None:intergenic | 50.0% | |
| GAACAAACTGCCCTTTCACC+CGG | + | chr7.3:368807-368826 | None:intergenic | 50.0% | |
| GCATCATCCAACCAGTGATG+AGG | + | chr7.3:368220-368239 | None:intergenic | 50.0% | |
| GCCAAGTACAGGGTGAACTT+GGG | - | chr7.3:368827-368846 | MS.gene22750:intron | 50.0% | |
| GTAGGTTTAGGTGAGATGCC+AGG | + | chr7.3:366978-366997 | None:intergenic | 50.0% | |
| TAGAGCTGCTTCTCTTTGGC+TGG | + | chr7.3:368482-368501 | None:intergenic | 50.0% | |
| TGAATTCTTTCCAGCCACCG+GGG | - | chr7.3:368024-368043 | MS.gene22750:CDS | 50.0% | |
| TTCCATCACTTACGCTGCCT+AGG | + | chr7.3:368366-368385 | None:intergenic | 50.0% | |
| TTGTGTCTCTAAGCCCGTCA+TGG | + | chr7.3:368447-368466 | None:intergenic | 50.0% | |
| ! | CATTGAGCTGCGACACCTTT+TGG | - | chr7.3:367560-367579 | MS.gene22750:CDS | 50.0% |
| ! | GCAGTTTGTTCGCCAAGTAC+AGG | - | chr7.3:368816-368835 | MS.gene22750:intron | 50.0% |
| ! | GGTTCTCTGCCTGTCTTTTC+CGG | + | chr7.3:368780-368799 | None:intergenic | 50.0% |
| !! | CAAAAGGTGTCGCAGCTCAA+TGG | + | chr7.3:367562-367581 | None:intergenic | 50.0% |
| !! | TCTTTGGAAGCACCAACTGG+TGG | - | chr7.3:367333-367352 | MS.gene22750:intron | 50.0% |
| ACAAACTGCCCTTTCACCCG+GGG | + | chr7.3:368805-368824 | None:intergenic | 55.0% | |
| CCCCAAGTTCACCCTGTACT+TGG | + | chr7.3:368831-368850 | None:intergenic | 55.0% | |
| CCCTCAAGTTTGCAGGAGAG+TGG | + | chr7.3:366320-366339 | None:intergenic | 55.0% | |
| CGCCAAGTACAGGGTGAACT+TGG | - | chr7.3:368826-368845 | MS.gene22750:intron | 55.0% | |
| CGTTATGACTCTCCGCGTCA+TGG | + | chr7.3:368324-368343 | None:intergenic | 55.0% | |
| CTTGGGGTAGCTGAAACCAG+AGG | - | chr7.3:368844-368863 | MS.gene22750:CDS | 55.0% | |
| GAGTCATAACGCCAGTGGTG+TGG | - | chr7.3:368333-368352 | MS.gene22750:intron | 55.0% | |
| GCCACTCTCCTGCAAACTTG+AGG | - | chr7.3:366316-366335 | MS.gene22750:CDS | 55.0% | |
| GGAACTTGTGGCAGCATGTC+TGG | - | chr7.3:365865-365884 | MS.gene22750:intron | 55.0% | |
| AACGCCAGTGGTGTGGGTGA+AGG | - | chr7.3:368340-368359 | MS.gene22750:intron | 60.0% | |
| AGTGGTGTGGGTGAAGGCCT+AGG | - | chr7.3:368346-368365 | MS.gene22750:intron | 60.0% | |
| ATTATCGGAAGTGGCCCCGG+TGG | + | chr7.3:368041-368060 | None:intergenic | 60.0% | |
| CAAACTGCCCTTTCACCCGG+GGG | + | chr7.3:368804-368823 | None:intergenic | 60.0% | |
| GCGGAGAGTCATAACGCCAG+TGG | - | chr7.3:368328-368347 | MS.gene22750:intron | 60.0% | |
| GGCCTAGGCAGCGTAAGTGA+TGG | - | chr7.3:368361-368380 | MS.gene22750:intron | 60.0% | |
| TAGGCCTTCACCCACACCAC+TGG | + | chr7.3:368347-368366 | None:intergenic | 60.0% | |
| AGAACCGCCCCCGGGTGAAA+GGG | - | chr7.3:368794-368813 | MS.gene22750:intron | 65.0% | |
| ACAGGCAGAGAACCGCCCCC+GGG | - | chr7.3:368786-368805 | MS.gene22750:intron | 70.0% | |
| ACTGCCCTTTCACCCGGGGG+CGG | + | chr7.3:368801-368820 | None:intergenic | 70.0% | |
| GACAGGCAGAGAACCGCCCC+CGG | - | chr7.3:368785-368804 | MS.gene22750:intron | 70.0% | |
| GAGAACCGCCCCCGGGTGAA+AGG | - | chr7.3:368793-368812 | MS.gene22750:intron | 70.0% | |
| TCGGAAGTGGCCCCGGTGGC+TGG | + | chr7.3:368037-368056 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 365640 | 368873 | 365640 | ID=MS.gene22750 |
| chr7.3 | mRNA | 365640 | 368873 | 365640 | ID=MS.gene22750.t1;Parent=MS.gene22750 |
| chr7.3 | exon | 368834 | 368873 | 368834 | ID=MS.gene22750.t1.exon1;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 368834 | 368873 | 368834 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 368590 | 368744 | 368590 | ID=MS.gene22750.t1.exon2;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 368590 | 368744 | 368590 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 368384 | 368497 | 368384 | ID=MS.gene22750.t1.exon3;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 368384 | 368497 | 368384 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 367954 | 368065 | 367954 | ID=MS.gene22750.t1.exon4;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 367954 | 368065 | 367954 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 367465 | 367864 | 367465 | ID=MS.gene22750.t1.exon5;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 367465 | 367864 | 367465 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 365967 | 366666 | 365967 | ID=MS.gene22750.t1.exon6;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 365967 | 366666 | 365967 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| chr7.3 | exon | 365640 | 365750 | 365640 | ID=MS.gene22750.t1.exon7;Parent=MS.gene22750.t1 |
| chr7.3 | CDS | 365640 | 365750 | 365640 | ID=cds.MS.gene22750.t1;Parent=MS.gene22750.t1 |
| Gene Sequence |
| Protein sequence |
