Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24052.t1 | XP_013468351.1 | 97.7 | 481 | 11 | 0 | 1 | 481 | 1 | 481 | 5.10E-224 | 786.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24052.t1 | O80925 | 69.0 | 368 | 102 | 6 | 1 | 359 | 1 | 365 | 6.7e-132 | 472.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24052.t1 | A0A072VLX3 | 97.7 | 481 | 11 | 0 | 1 | 481 | 1 | 481 | 3.7e-224 | 786.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene24052 | 0.840968 | 6.31E-58 | -1.69E-46 |
| MS.gene049680 | MS.gene24052 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene24052 | 0.808797 | 2.60E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene24052 | 0.819102 | 1.39E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene24052 | 0.8269 | 2.10E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene24052 | 0.810758 | 9.83E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene24052 | 0.802367 | 5.80E-49 | -1.69E-46 |
| MS.gene051731 | MS.gene24052 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene24052 | 0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene052793 | MS.gene24052 | 0.851546 | 8.27E-61 | -1.69E-46 |
| MS.gene053143 | MS.gene24052 | 0.814257 | 1.69E-51 | -1.69E-46 |
| MS.gene053427 | MS.gene24052 | 0.837268 | 5.75E-57 | -1.69E-46 |
| MS.gene054004 | MS.gene24052 | 0.836758 | 7.76E-57 | -1.69E-46 |
| MS.gene054142 | MS.gene24052 | 0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene24052 | 0.829744 | 4.34E-55 | -1.69E-46 |
| MS.gene055339 | MS.gene24052 | 0.900708 | 5.59E-78 | -1.69E-46 |
| MS.gene055506 | MS.gene24052 | 0.803605 | 3.22E-49 | -1.69E-46 |
| MS.gene055765 | MS.gene24052 | 0.82422 | 9.08E-54 | -1.69E-46 |
| MS.gene056082 | MS.gene24052 | 0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene24052 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene24052 | 0.803556 | 3.29E-49 | -1.69E-46 |
| MS.gene056881 | MS.gene24052 | 0.834807 | 2.42E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene24052 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene057694 | MS.gene24052 | 0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene24052 | 0.846311 | 2.35E-59 | -1.69E-46 |
| MS.gene059802 | MS.gene24052 | 0.85248 | 4.49E-61 | -1.69E-46 |
| MS.gene059949 | MS.gene24052 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene24052 | 0.801404 | 9.15E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene24052 | 0.843774 | 1.14E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24052 | MS.gene004045 | PPI |
| MS.gene24052 | MS.gene052122 | PPI |
| MS.gene24052 | MS.gene021049 | PPI |
| MS.gene24052 | MS.gene67376 | PPI |
| MS.gene24052 | MS.gene45489 | PPI |
| MS.gene24052 | MS.gene004101 | PPI |
| MS.gene24052 | MS.gene071169 | PPI |
| MS.gene24052 | MS.gene036453 | PPI |
| MS.gene24052 | MS.gene30955 | PPI |
| MS.gene24052 | MS.gene79962 | PPI |
| MS.gene24052 | MS.gene31156 | PPI |
| MS.gene021114 | MS.gene24052 | PPI |
| MS.gene24052 | MS.gene001874 | PPI |
| MS.gene044849 | MS.gene24052 | PPI |
| MS.gene24052 | MS.gene41176 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24052.t1 | MTR_1g069000 | 98.545 | 481 | 7 | 0 | 1 | 481 | 1 | 481 | 0.0 | 977 |
| MS.gene24052.t1 | MTR_7g099830 | 64.989 | 457 | 102 | 10 | 1 | 444 | 1 | 412 | 0.0 | 557 |
| MS.gene24052.t1 | MTR_8g067090 | 48.039 | 102 | 53 | 0 | 7 | 108 | 13 | 114 | 1.33e-27 | 114 |
| MS.gene24052.t1 | MTR_8g471120 | 48.039 | 102 | 53 | 0 | 7 | 108 | 13 | 114 | 1.33e-27 | 114 |
| MS.gene24052.t1 | MTR_8g067080 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 2.85e-27 | 113 |
| MS.gene24052.t1 | MTR_8g067080 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 3.48e-27 | 113 |
| MS.gene24052.t1 | MTR_8g471110 | 44.762 | 105 | 58 | 0 | 7 | 111 | 13 | 117 | 3.48e-27 | 113 |
| MS.gene24052.t1 | MTR_2g030230 | 48.864 | 88 | 43 | 2 | 5 | 91 | 19 | 105 | 4.44e-21 | 94.4 |
| MS.gene24052.t1 | MTR_8g088320 | 46.739 | 92 | 47 | 2 | 1 | 91 | 6 | 96 | 6.92e-21 | 93.6 |
| MS.gene24052.t1 | MTR_2g080950 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 2.78e-20 | 94.0 |
| MS.gene24052.t1 | MTR_8g464390 | 48.101 | 79 | 41 | 0 | 5 | 83 | 17 | 95 | 9.69e-20 | 92.0 |
| MS.gene24052.t1 | MTR_6g080710 | 51.351 | 74 | 36 | 0 | 4 | 77 | 16 | 89 | 5.96e-19 | 87.0 |
| MS.gene24052.t1 | MTR_8g038400 | 48.718 | 78 | 39 | 1 | 5 | 81 | 18 | 95 | 1.60e-18 | 87.4 |
| MS.gene24052.t1 | MTR_3g017500 | 48.052 | 77 | 39 | 1 | 6 | 81 | 23 | 99 | 1.82e-17 | 84.3 |
| MS.gene24052.t1 | MTR_3g017500 | 48.052 | 77 | 39 | 1 | 6 | 81 | 53 | 129 | 3.09e-17 | 84.0 |
| MS.gene24052.t1 | MTR_4g074170 | 46.053 | 76 | 39 | 1 | 10 | 83 | 485 | 560 | 4.16e-15 | 78.6 |
| MS.gene24052.t1 | MTR_8g100100 | 48.571 | 70 | 34 | 1 | 10 | 77 | 500 | 569 | 2.11e-14 | 76.3 |
| MS.gene24052.t1 | MTR_8g100100 | 48.571 | 70 | 34 | 1 | 10 | 77 | 506 | 575 | 2.16e-14 | 76.3 |
| MS.gene24052.t1 | MTR_7g020860 | 45.333 | 75 | 39 | 1 | 10 | 82 | 508 | 582 | 1.05e-13 | 73.9 |
| MS.gene24052.t1 | MTR_7g020860 | 47.143 | 70 | 35 | 1 | 10 | 77 | 508 | 577 | 1.24e-13 | 73.9 |
| MS.gene24052.t1 | MTR_3g098680 | 44.286 | 70 | 37 | 1 | 10 | 77 | 503 | 572 | 5.40e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24052.t1 | AT2G37550 | 61.789 | 492 | 141 | 8 | 1 | 481 | 1 | 456 | 0.0 | 554 |
| MS.gene24052.t1 | AT2G37550 | 61.789 | 492 | 141 | 8 | 1 | 481 | 1 | 456 | 0.0 | 554 |
| MS.gene24052.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene24052.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene24052.t1 | AT3G53710 | 61.647 | 498 | 135 | 13 | 1 | 481 | 1 | 459 | 0.0 | 541 |
| MS.gene24052.t1 | AT4G17890 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 1.37e-29 | 119 |
| MS.gene24052.t1 | AT4G17890 | 48.571 | 105 | 54 | 0 | 7 | 111 | 16 | 120 | 2.18e-29 | 119 |
| MS.gene24052.t1 | AT5G46750 | 48.571 | 105 | 54 | 0 | 7 | 111 | 13 | 117 | 6.64e-29 | 118 |
| MS.gene24052.t1 | AT2G35210 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 1.05e-27 | 114 |
| MS.gene24052.t1 | AT2G35210 | 46.667 | 105 | 56 | 0 | 7 | 111 | 13 | 117 | 2.83e-27 | 113 |
| MS.gene24052.t1 | AT4G05330 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 4.08e-22 | 97.8 |
| MS.gene24052.t1 | AT4G05330 | 48.810 | 84 | 42 | 1 | 5 | 87 | 16 | 99 | 4.08e-22 | 97.8 |
| MS.gene24052.t1 | AT5G54310 | 41.803 | 122 | 68 | 2 | 7 | 128 | 19 | 137 | 1.24e-21 | 97.8 |
| MS.gene24052.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 2.51e-21 | 91.7 |
| MS.gene24052.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 3.19e-21 | 92.8 |
| MS.gene24052.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene24052.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene24052.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene24052.t1 | AT4G21160 | 47.727 | 88 | 44 | 2 | 5 | 91 | 16 | 102 | 4.46e-21 | 94.7 |
| MS.gene24052.t1 | AT3G17660 | 52.703 | 74 | 35 | 0 | 4 | 77 | 16 | 89 | 8.84e-21 | 92.0 |
| MS.gene24052.t1 | AT3G07940 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 9.03e-20 | 89.7 |
| MS.gene24052.t1 | AT3G07940 | 50.649 | 77 | 37 | 1 | 6 | 81 | 49 | 125 | 3.23e-19 | 89.7 |
| MS.gene24052.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 359 | 415 | 2.53e-15 | 79.0 |
| MS.gene24052.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 470 | 526 | 2.55e-15 | 79.3 |
| MS.gene24052.t1 | AT1G60860 | 54.386 | 57 | 26 | 0 | 7 | 63 | 299 | 355 | 2.91e-15 | 79.0 |
| MS.gene24052.t1 | AT3G17660 | 50.000 | 58 | 29 | 0 | 4 | 61 | 16 | 73 | 3.63e-14 | 72.0 |
| MS.gene24052.t1 | AT5G13300 | 48.571 | 70 | 34 | 1 | 10 | 77 | 507 | 576 | 3.83e-14 | 75.5 |
| MS.gene24052.t1 | AT5G61980 | 45.714 | 70 | 36 | 1 | 15 | 82 | 509 | 578 | 1.09e-13 | 74.3 |
| MS.gene24052.t1 | AT1G10870 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.17e-13 | 72.8 |
| MS.gene24052.t1 | AT1G10870 | 50.000 | 54 | 27 | 0 | 10 | 63 | 473 | 526 | 3.38e-13 | 72.4 |
Find 169 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATAGGGAAGGAGGTTC+GGG | 0.309762 | 1.4:+55095079 | MS.gene24052:CDS |
| AAGAAAGCTGCTGGACATAA+TGG | 0.311171 | 1.4:+55097078 | MS.gene24052:CDS |
| CACAAAAGAGATTACTTCTA+AGG | 0.329121 | 1.4:+55095647 | MS.gene24052:CDS |
| CTCAAACTCTTGGGACGATT+GGG | 0.331416 | 1.4:+55096822 | MS.gene24052:CDS |
| TGGCGGCATCACGGCGGCTC+CGG | 0.342322 | 1.4:+55094627 | MS.gene24052:CDS |
| TTGGGATAGGGAAGGAGGTT+CGG | 0.345457 | 1.4:+55095078 | MS.gene24052:CDS |
| ATCCCAGCTCTTGGGATGAT+TGG | 0.345579 | 1.4:+55096926 | MS.gene24052:CDS |
| ATGATGCTGGTTGGGCTGGC+TGG | 0.346920 | 1.4:+55097004 | MS.gene24052:CDS |
| TATTTATTCGCGGTCGCAAT+TGG | 0.352308 | 1.4:+55095186 | MS.gene24052:CDS |
| GCAGATCTTGTTGCCGGGTT+GGG | 0.371767 | 1.4:-55094660 | None:intergenic |
| CAAATTCGACTACTAATAAC+TGG | 0.372531 | 1.4:+55096683 | MS.gene24052:CDS |
| CCGGTTGTGAAGGAGAATTT+AGG | 0.374910 | 1.4:+55094995 | MS.gene24052:CDS |
| GGAGTTGATCCTTTATTAGT+AGG | 0.375169 | 1.4:-55096871 | None:intergenic |
| ATGATTCCGGCTGGGATGAT+TGG | 0.384077 | 1.4:+55095059 | MS.gene24052:CDS |
| TATTCATCTGGTGGGCAGTC+TGG | 0.394756 | 1.4:+55096895 | MS.gene24052:CDS |
| AGTTTATCGTGATCGGATTC+AGG | 0.397292 | 1.4:+55094940 | MS.gene24052:CDS |
| CTTCCTTCCTAGAATCTTTG+TGG | 0.398078 | 1.4:-55096951 | None:intergenic |
| AAGGGAGAACCTACTAATAA+AGG | 0.401153 | 1.4:+55096862 | MS.gene24052:CDS |
| GACTGCCCACCAGATGAATA+AGG | 0.405430 | 1.4:-55096892 | None:intergenic |
| TGATAGAAATGGCTACTATC+AGG | 0.410799 | 1.4:+55096720 | MS.gene24052:CDS |
| CGCAGATCTTGTTGCCGGGT+TGG | 0.414757 | 1.4:-55094661 | None:intergenic |
| TGTTGCCGGGTTGGGATTGA+AGG | 0.414970 | 1.4:-55094652 | None:intergenic |
| GCTCAAACTCTTGGGACGAT+TGG | 0.416102 | 1.4:+55096821 | MS.gene24052:CDS |
| ATTGGGACCACAAAGATTCT+AGG | 0.416709 | 1.4:+55096944 | MS.gene24052:CDS |
| CCACAATAATGATGCTGGTT+GGG | 0.420450 | 1.4:+55096996 | MS.gene24052:CDS |
| TCCCAGCTCTTGGGATGATT+GGG | 0.422693 | 1.4:+55096927 | MS.gene24052:CDS |
| GGCGGCATCACGGCGGCTCC+GGG | 0.423745 | 1.4:+55094628 | MS.gene24052:CDS |
| CGCCGATGGGGCAGAGTCGC+CGG | 0.424686 | 1.4:+55095032 | MS.gene24052:CDS |
| CGAAATGAGAATGATAGAAA+TGG | 0.430727 | 1.4:+55096709 | MS.gene24052:CDS |
| AAACTCAAAGCTCAAACTCT+TGG | 0.431090 | 1.4:+55096812 | MS.gene24052:CDS |
| AATAATGATGCTGGTTGGGC+TGG | 0.431540 | 1.4:+55097000 | MS.gene24052:CDS |
| TCGGTCGTGGCGTGATCCTC+CGG | 0.431712 | 1.4:+55094976 | MS.gene24052:CDS |
| TTCCTTCGGAATAGAATACT+TGG | 0.434318 | 1.4:-55094879 | None:intergenic |
| TGATTCCGGCTGGGATGATT+GGG | 0.435890 | 1.4:+55095060 | MS.gene24052:CDS |
| TACTATCAGGATTTCAATCA+AGG | 0.437121 | 1.4:+55096733 | MS.gene24052:CDS |
| CGCAAGGTGGGAAGTATGTT+GGG | 0.437210 | 1.4:+55095290 | MS.gene24052:CDS |
| TACTCACAATCCCAGCTCTT+GGG | 0.438114 | 1.4:+55096918 | MS.gene24052:CDS |
| GGATCAACTCCTTATTCATC+TGG | 0.439382 | 1.4:+55096883 | MS.gene24052:CDS |
| GGAAGAGAACAATCTTCATC+AGG | 0.440220 | 1.4:+55096781 | MS.gene24052:CDS |
| AAATCAGATGACGCTTGGAC+AGG | 0.441545 | 1.4:+55097102 | MS.gene24052:CDS |
| GGGGATTGGTAAGTTGTCAT+TGG | 0.442974 | 1.4:+55095590 | MS.gene24052:intron |
| AGAAAGCTGCTGGACATAAT+GGG | 0.444118 | 1.4:+55097079 | MS.gene24052:CDS |
| CCTAAATTCTCCTTCACAAC+CGG | 0.446662 | 1.4:-55094995 | None:intergenic |
| TCCGGAAAACACCGTGGTCT+CGG | 0.447372 | 1.4:+55094752 | MS.gene24052:CDS |
| AACTCAAAGCTCAAACTCTT+GGG | 0.448408 | 1.4:+55096813 | MS.gene24052:CDS |
| TGGGGAGCTGATGCTTTAGC+TGG | 0.452701 | 1.4:-55096976 | None:intergenic |
| CATGGCTTTGGCTTCACAGA+AGG | 0.454790 | 1.4:+55096636 | MS.gene24052:CDS |
| TGCGACGGTGGAAGTCCTTC+CGG | 0.458253 | 1.4:-55095271 | None:intergenic |
| AAGGAGAATTTAGGTTCAAA+GGG | 0.460070 | 1.4:+55095004 | MS.gene24052:CDS |
| ATCGACGCAGATCTTGTTGC+CGG | 0.461374 | 1.4:-55094666 | None:intergenic |
| AAAGGAGGTAATTCTTCTAC+TGG | 0.461732 | 1.4:+55096760 | MS.gene24052:CDS |
| CGGATTCAGGCTTTGTCGGA+AGG | 0.463866 | 1.4:+55094953 | MS.gene24052:CDS |
| GTCCCAATCATCCCAAGAGC+TGG | 0.464845 | 1.4:-55096929 | None:intergenic |
| TGATCGGATTCAGGCTTTGT+CGG | 0.466457 | 1.4:+55094949 | MS.gene24052:CDS |
| GTAACAATATCCGTTTCCTT+CGG | 0.466590 | 1.4:-55094893 | None:intergenic |
| TTCAAAGGGAAGGCCGCCGA+TGG | 0.468886 | 1.4:+55095018 | MS.gene24052:CDS |
| AATCAGATGACGCTTGGACA+GGG | 0.470359 | 1.4:+55097103 | MS.gene24052:CDS |
| TGATGCTGGTTGGGCTGGCT+GGG | 0.473809 | 1.4:+55097005 | MS.gene24052:CDS |
| GTACTCACAATCCCAGCTCT+TGG | 0.474135 | 1.4:+55096917 | MS.gene24052:CDS |
| CTGCTTCAGTTTATCGTGAT+CGG | 0.474442 | 1.4:+55094933 | MS.gene24052:CDS |
| GAAGGAGAATTTAGGTTCAA+AGG | 0.482185 | 1.4:+55095003 | MS.gene24052:CDS |
| AGCTTCTGCGGCGGGTAAAG+AGG | 0.482654 | 1.4:+55095210 | MS.gene24052:CDS |
| CAGAGATTGGTCAAAGGACA+TGG | 0.483037 | 1.4:+55096596 | MS.gene24052:CDS |
| CCCAACCAGCATCATTATTG+TGG | 0.485486 | 1.4:-55096996 | None:intergenic |
| TTTGAACGGCGGTGGTGCAC+CGG | 0.486910 | 1.4:+55095141 | MS.gene24052:CDS |
| AGCAGCGTTGGTGTTATACT+TGG | 0.487190 | 1.4:-55094915 | None:intergenic |
| ATTTAATTATCACAGGGGAT+TGG | 0.494169 | 1.4:+55095576 | MS.gene24052:intron |
| AGTCGCCGGAGTAATGATTC+CGG | 0.494324 | 1.4:+55095046 | MS.gene24052:CDS |
| AAGGACATGGGGTTTAATGA+AGG | 0.494662 | 1.4:+55096609 | MS.gene24052:CDS |
| TCATCTAATAAGAAAGCTGC+TGG | 0.498028 | 1.4:+55097069 | MS.gene24052:CDS |
| TCAAAGGGAAGGCCGCCGAT+GGG | 0.498527 | 1.4:+55095019 | MS.gene24052:CDS |
| GATAGGGAAGGAGGTTCGGG+TGG | 0.503166 | 1.4:+55095082 | MS.gene24052:CDS |
| GCCGGAGTAATGATTCCGGC+TGG | 0.503400 | 1.4:+55095050 | MS.gene24052:CDS |
| GGTGGGAAGTATGTTGGGTT+CGG | 0.503415 | 1.4:+55095295 | MS.gene24052:CDS |
| GCTGCTAATGCTGTTCAGAC+TGG | 0.505364 | 1.4:+55095624 | MS.gene24052:CDS |
| GGAAGGCGGTTATGATCAAA+AGG | 0.509923 | 1.4:+55096537 | MS.gene24052:CDS |
| CGGGTTGGGATTGAAGGTCC+CGG | 0.513419 | 1.4:-55094646 | None:intergenic |
| TCGCAAGGTGGGAAGTATGT+TGG | 0.513815 | 1.4:+55095289 | MS.gene24052:CDS |
| CCCACAATAATGATGCTGGT+TGG | 0.515926 | 1.4:+55096995 | MS.gene24052:CDS |
| GACTTCCACCGTCGCAAGGT+GGG | 0.517045 | 1.4:+55095278 | MS.gene24052:CDS |
| TTTGGCTTCACAGAAGGTTG+AGG | 0.518131 | 1.4:+55096642 | MS.gene24052:CDS |
| CAATTGGAAGCTTCTGCGGC+GGG | 0.519075 | 1.4:+55095202 | MS.gene24052:CDS |
| CTTTGTCGGAAGGTCGGTCG+TGG | 0.519720 | 1.4:+55094963 | MS.gene24052:CDS |
| CCAACCAGCATCATTATTGT+GGG | 0.519854 | 1.4:-55096995 | None:intergenic |
| ACTCAAAAGACATCAGAGAT+TGG | 0.520352 | 1.4:+55096583 | MS.gene24052:CDS |
| TTGCTCCTTTGTGAAGGCAT+CGG | 0.521360 | 1.4:-55095325 | None:intergenic |
| ATGGGAAATCAGATGACGCT+TGG | 0.522747 | 1.4:+55097097 | MS.gene24052:CDS |
| TGTGGATTGCTCCTTTGTGA+AGG | 0.525196 | 1.4:-55095331 | None:intergenic |
| GATCCGTCACCATGGATGCT+TGG | 0.527744 | 1.4:+55094795 | MS.gene24052:CDS |
| GATTTCGGACCAAGCATCCA+TGG | 0.529426 | 1.4:-55094804 | None:intergenic |
| CCGGCTGGGATGATTGGGAT+AGG | 0.534746 | 1.4:+55095065 | MS.gene24052:CDS |
| TCGACGCAGATCTTGTTGCC+GGG | 0.535740 | 1.4:-55094665 | None:intergenic |
| ACGATAAACTGAAGCAGCGT+TGG | 0.536105 | 1.4:-55094927 | None:intergenic |
| TTCAGGCTTTGTCGGAAGGT+CGG | 0.544881 | 1.4:+55094957 | MS.gene24052:CDS |
| CTCCGGCGACTCTGCCCCAT+CGG | 0.545912 | 1.4:-55095034 | None:intergenic |
| TTTAGGAATTTGAACGGCGG+TGG | 0.547735 | 1.4:+55095133 | MS.gene24052:CDS |
| GCTCCCCACAATAATGATGC+TGG | 0.549107 | 1.4:+55096991 | MS.gene24052:CDS |
| GTATTCTATTCCGAAGGAAA+CGG | 0.550054 | 1.4:+55094883 | MS.gene24052:CDS |
| GCTTCTGCGGCGGGTAAAGA+GGG | 0.555155 | 1.4:+55095211 | MS.gene24052:CDS |
| GCGTGATCCTCCGGTTGTGA+AGG | 0.563730 | 1.4:+55094985 | MS.gene24052:CDS |
| TCCGTCGACCTCGATCTCGC+CGG | 0.565057 | 1.4:-55095160 | None:intergenic |
| ATCAGATGACGCTTGGACAG+GGG | 0.565298 | 1.4:+55097104 | MS.gene24052:CDS |
| TGCCAAGTATTCTATTCCGA+AGG | 0.565535 | 1.4:+55094877 | MS.gene24052:CDS |
| TCTTTGTTTCAGGTCAAGGA+AGG | 0.567944 | 1.4:+55096520 | MS.gene24052:intron |
| TACTTCCCACCTTGCGACGG+TGG | 0.568939 | 1.4:-55095283 | None:intergenic |
| GGCGGAGAATGAGTCAAGGC+CGG | 0.569646 | 1.4:+55095252 | MS.gene24052:CDS |
| GTCGCAATTGGAAGCTTCTG+CGG | 0.569797 | 1.4:+55095198 | MS.gene24052:CDS |
| CAAAGGGAAGGCCGCCGATG+GGG | 0.571024 | 1.4:+55095020 | MS.gene24052:CDS |
| GATCATCCATGGCGGCATCA+CGG | 0.576667 | 1.4:+55094618 | None:intergenic |
| AGAATTTAGGTTCAAAGGGA+AGG | 0.577046 | 1.4:+55095008 | MS.gene24052:CDS |
| TCAACTCCTTATTCATCTGG+TGG | 0.577122 | 1.4:+55096886 | MS.gene24052:CDS |
| CGGCTGGGATGATTGGGATA+GGG | 0.577559 | 1.4:+55095066 | MS.gene24052:CDS |
| TCGGAATAGAATACTTGGCA+AGG | 0.577709 | 1.4:-55094874 | None:intergenic |
| TCCCAATCATCCCAAGAGCT+GGG | 0.579490 | 1.4:-55096928 | None:intergenic |
| TTCATGTGCTTAGAATGCTC+CGG | 0.579995 | 1.4:+55094734 | MS.gene24052:CDS |
| GAAGGACTTCCACCGTCGCA+AGG | 0.582983 | 1.4:+55095274 | MS.gene24052:CDS |
| GAGCCGCCGTGATGCCGCCA+TGG | 0.583473 | 1.4:-55094624 | None:intergenic |
| TGGGATAATGCAAAAGATGA+TGG | 0.583815 | 1.4:+55097024 | MS.gene24052:CDS |
| CCTATCCCAATCATCCCAGC+CGG | 0.584873 | 1.4:-55095065 | None:intergenic |
| CCGGAGTAATGATTCCGGCT+GGG | 0.585313 | 1.4:+55095051 | MS.gene24052:CDS |
| TCAGATGACGCTTGGACAGG+GGG | 0.587832 | 1.4:+55097105 | MS.gene24052:CDS |
| GAGGTTCGGGTGGTGATGTG+AGG | 0.591884 | 1.4:+55095092 | MS.gene24052:CDS |
| GATGTGAGGAGTAAGTCGAC+GGG | 0.593326 | 1.4:+55095106 | MS.gene24052:CDS |
| TCAAACTCTTGGGACGATTG+GGG | 0.596473 | 1.4:+55096823 | MS.gene24052:CDS |
| AGGACATGGGGTTTAATGAA+GGG | 0.599160 | 1.4:+55096610 | MS.gene24052:CDS |
| GTGGTGCACCGGCGAGATCG+AGG | 0.600418 | 1.4:+55095152 | MS.gene24052:CDS |
| CCCAGCCGGAATCATTACTC+CGG | 0.606336 | 1.4:-55095051 | None:intergenic |
| CAGTGGGCATCAGTCTCCTA+CGG | 0.607011 | 1.4:+55094707 | MS.gene24052:CDS |
| CTCTCAGAAGAATCCACAGT+GGG | 0.607546 | 1.4:+55094691 | MS.gene24052:CDS |
| GCAATTGGAAGCTTCTGCGG+CGG | 0.607693 | 1.4:+55095201 | MS.gene24052:CDS |
| CGGGACCTTCAATCCCAACC+CGG | 0.609873 | 1.4:+55094647 | MS.gene24052:CDS |
| AAGCATCCATGGTGACGGAT+CGG | 0.610332 | 1.4:-55094793 | None:intergenic |
| TTGTTTCAGGTCAAGGAAGG+CGG | 0.612416 | 1.4:+55096523 | MS.gene24052:intron |
| TTCAATCAAGGGAACAAAGG+AGG | 0.615582 | 1.4:+55096745 | MS.gene24052:CDS |
| AGAGATTGGTCAAAGGACAT+GGG | 0.615964 | 1.4:+55096597 | MS.gene24052:CDS |
| GGACATGGGGTTTAATGAAG+GGG | 0.616409 | 1.4:+55096611 | MS.gene24052:CDS |
| GATTTCAATCAAGGGAACAA+AGG | 0.616794 | 1.4:+55096742 | MS.gene24052:CDS |
| GGACCAAGCATCCATGGTGA+CGG | 0.618778 | 1.4:-55094798 | None:intergenic |
| CATGGTGACGGATCGGACGA+AGG | 0.619426 | 1.4:-55094786 | None:intergenic |
| CGGCGACTCTGCCCCATCGG+CGG | 0.622822 | 1.4:-55095031 | None:intergenic |
| TGATGTGAGGAGTAAGTCGA+CGG | 0.623072 | 1.4:+55095105 | MS.gene24052:CDS |
| GAGAATGAGTCAAGGCCGGA+AGG | 0.624456 | 1.4:+55095256 | MS.gene24052:CDS |
| CTTCGTCCGATCCGTCACCA+TGG | 0.629444 | 1.4:+55094787 | MS.gene24052:CDS |
| GGACTTCCACCGTCGCAAGG+TGG | 0.631829 | 1.4:+55095277 | MS.gene24052:CDS |
| ACATACTTCCCACCTTGCGA+CGG | 0.631937 | 1.4:-55095286 | None:intergenic |
| GATGATTGGGATAGGGAAGG+AGG | 0.632481 | 1.4:+55095073 | MS.gene24052:CDS |
| AGACATCAGAGATTGGTCAA+AGG | 0.632664 | 1.4:+55096590 | MS.gene24052:CDS |
| CAACTCCTTATTCATCTGGT+GGG | 0.634524 | 1.4:+55096887 | MS.gene24052:CDS |
| GGACCACAAAGATTCTAGGA+AGG | 0.638994 | 1.4:+55096948 | MS.gene24052:CDS |
| CGACGGAGGATATTTATTCG+CGG | 0.642927 | 1.4:+55095176 | MS.gene24052:CDS |
| ACTATCAGGATTTCAATCAA+GGG | 0.645448 | 1.4:+55096734 | MS.gene24052:CDS |
| GAGATTGGTCAAAGGACATG+GGG | 0.646826 | 1.4:+55096598 | MS.gene24052:CDS |
| GAAGAGAACAATCTTCATCA+GGG | 0.647329 | 1.4:+55096782 | MS.gene24052:CDS |
| GGCGAGATCGAGGTCGACGG+AGG | 0.649649 | 1.4:+55095162 | MS.gene24052:CDS |
| CAACCAGCATCATTATTGTG+GGG | 0.653135 | 1.4:-55096994 | None:intergenic |
| ACCGGCGAGATCGAGGTCGA+CGG | 0.653631 | 1.4:+55095159 | MS.gene24052:CDS |
| TGGGATGATTGGGATAGGGA+AGG | 0.657232 | 1.4:+55095070 | MS.gene24052:CDS |
| AGATGTGAACACCGAGACCA+CGG | 0.664997 | 1.4:-55094763 | None:intergenic |
| TAAGCACATGAAGATGCCGT+AGG | 0.669663 | 1.4:-55094723 | None:intergenic |
| AAATTCTCCTTCACAACCGG+AGG | 0.674563 | 1.4:-55094992 | None:intergenic |
| AGATGGCGGAGAATGAGTCA+AGG | 0.685000 | 1.4:+55095248 | MS.gene24052:CDS |
| CTAGTCCGATGCCTTCACAA+AGG | 0.693188 | 1.4:+55095320 | MS.gene24052:CDS |
| GACATGGGGTTTAATGAAGG+GGG | 0.697882 | 1.4:+55096612 | MS.gene24052:CDS |
| ATGTGAGGAGTAAGTCGACG+GGG | 0.706562 | 1.4:+55095107 | MS.gene24052:CDS |
| TAGGAGACTGATGCCCACTG+TGG | 0.710667 | 1.4:-55094704 | None:intergenic |
| CATCCATGGCGGCATCACGG+CGG | 0.720125 | 1.4:+55094621 | None:intergenic |
| GAATGCTCCGGAAAACACCG+TGG | 0.731228 | 1.4:+55094746 | MS.gene24052:CDS |
| TGTGAGGAGTAAGTCGACGG+GGG | 0.747661 | 1.4:+55095108 | MS.gene24052:CDS |
| GCTCTCAGAAGAATCCACAG+TGG | 0.805841 | 1.4:+55094690 | MS.gene24052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTATTTAATTATCACA+GGG | + | chr1.4:55095570-55095589 | MS.gene24052:intron | 15.0% |
| !! | TTATTGTATTTAATTATCAC+AGG | + | chr1.4:55095569-55095588 | MS.gene24052:intron | 15.0% |
| !! | AAAAAAGGAAAGAAACTAAT+TGG | - | chr1.4:55096359-55096378 | None:intergenic | 20.0% |
| !! | AAAAAGGAAAGAAACTAATT+GGG | - | chr1.4:55096358-55096377 | None:intergenic | 20.0% |
| !! | AAAATTAGGCAAAGAAAAAA+TGG | - | chr1.4:55096485-55096504 | None:intergenic | 20.0% |
| !! | AAATTAGGCAAAGAAAAAAT+GGG | - | chr1.4:55096484-55096503 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGAAATAAATGA+AGG | + | chr1.4:55096033-55096052 | MS.gene24052:intron | 20.0% |
| !! | ATTGTATTTAATTATCACAG+GGG | + | chr1.4:55095571-55095590 | MS.gene24052:intron | 20.0% |
| !! | GAAAATTTGTATTTGTTTCA+CGG | + | chr1.4:55095725-55095744 | MS.gene24052:intron | 20.0% |
| !! | GCTAAAAAGAAATAAATGAA+GGG | + | chr1.4:55096034-55096053 | MS.gene24052:intron | 20.0% |
| !! | TATACCAATTAATGCAAAAA+AGG | - | chr1.4:55096374-55096393 | None:intergenic | 20.0% |
| !!! | ATTTGGATTATTTTGTTCAT+GGG | + | chr1.4:55095671-55095690 | MS.gene24052:intron | 20.0% |
| !!! | CATTTTTTTGATTTGGATTT+CGG | - | chr1.4:55094822-55094841 | None:intergenic | 20.0% |
| !!! | TATTTGGATTATTTTGTTCA+TGG | + | chr1.4:55095670-55095689 | MS.gene24052:intron | 20.0% |
| !!! | TGTATTGATAATGTATTTGT+GGG | + | chr1.4:55096089-55096108 | MS.gene24052:intron | 20.0% |
| !!! | TTCATTTATTTCTTTTTAGC+TGG | - | chr1.4:55096034-55096053 | None:intergenic | 20.0% |
| ! | CAACAAATTGAACTAATACA+TGG | - | chr1.4:55095774-55095793 | None:intergenic | 25.0% |
| ! | CGAAATCCAAATCAAAAAAA+TGG | + | chr1.4:55094820-55094839 | MS.gene24052:CDS | 25.0% |
| ! | TGACTGCATTAAAAAGATAA+CGG | - | chr1.4:55095995-55096014 | None:intergenic | 25.0% |
| ! | TGATTACATTCAATTACTAC+CGG | + | chr1.4:55095470-55095489 | MS.gene24052:intron | 25.0% |
| ! | TTGAATGTAATCAAATGTGT+CGG | - | chr1.4:55095463-55095482 | None:intergenic | 25.0% |
| !! | CTATTTGATAACACTTATCT+CGG | - | chr1.4:55095885-55095904 | None:intergenic | 25.0% |
| !! | GAAAAATAATCATTTTGCTG+TGG | - | chr1.4:55095352-55095371 | None:intergenic | 25.0% |
| !!! | CTTTCCTTTTTTGCATTAAT+TGG | + | chr1.4:55096367-55096386 | MS.gene24052:intron | 25.0% |
| !!! | GGATTTGATAACTTTTATGA+AGG | + | chr1.4:55097045-55097064 | MS.gene24052:CDS | 25.0% |
| !!! | GTGTATTGATAATGTATTTG+TGG | + | chr1.4:55096088-55096107 | MS.gene24052:intron | 25.0% |
| !!! | TGATTTTATTTCAATTGCAC+TGG | - | chr1.4:55096318-55096337 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTGTTGTTTCAC+AGG | + | chr1.4:55095363-55095382 | MS.gene24052:CDS | 25.0% |
| !!! | TTTGGATTATTTTGTTCATG+GGG | + | chr1.4:55095672-55095691 | MS.gene24052:intron | 25.0% |
| !!! | TTTTTTTTGCTCTTTGTTTC+AGG | + | chr1.4:55096510-55096529 | MS.gene24052:intron | 25.0% |
| ACTATCAGGATTTCAATCAA+GGG | + | chr1.4:55096734-55096753 | MS.gene24052:CDS | 30.0% | |
| ATTTAATTATCACAGGGGAT+TGG | + | chr1.4:55095576-55095595 | MS.gene24052:intron | 30.0% | |
| CAAATCAAAAAAATGGAAGC+TGG | + | chr1.4:55094827-55094846 | MS.gene24052:CDS | 30.0% | |
| CAAATTCGACTACTAATAAC+TGG | + | chr1.4:55096683-55096702 | MS.gene24052:CDS | 30.0% | |
| CACAAAAGAGATTACTTCTA+AGG | + | chr1.4:55095647-55095666 | MS.gene24052:CDS | 30.0% | |
| CATGCTTTATAGTTGATTAG+TGG | + | chr1.4:55095523-55095542 | MS.gene24052:intron | 30.0% | |
| CGAAATGAGAATGATAGAAA+TGG | + | chr1.4:55096709-55096728 | MS.gene24052:CDS | 30.0% | |
| TACTATCAGGATTTCAATCA+AGG | + | chr1.4:55096733-55096752 | MS.gene24052:CDS | 30.0% | |
| ! | AAGGAGAATTTAGGTTCAAA+GGG | + | chr1.4:55095004-55095023 | MS.gene24052:CDS | 30.0% |
| ! | TATGACTTTTAGCATAGTGT+GGG | + | chr1.4:55096249-55096268 | MS.gene24052:intron | 30.0% |
| ! | TTATGACTTTTAGCATAGTG+TGG | + | chr1.4:55096248-55096267 | MS.gene24052:intron | 30.0% |
| !! | GAGATTACTTCTAAGGTATT+TGG | + | chr1.4:55095654-55095673 | MS.gene24052:intron | 30.0% |
| !! | GGGAATTGATAATGTTAACT+TGG | + | chr1.4:55096109-55096128 | MS.gene24052:intron | 30.0% |
| !!! | CAGCTTCCATTTTTTTGATT+TGG | - | chr1.4:55094829-55094848 | None:intergenic | 30.0% |
| AAACTCAAAGCTCAAACTCT+TGG | + | chr1.4:55096812-55096831 | MS.gene24052:CDS | 35.0% | |
| AAAGGAGGTAATTCTTCTAC+TGG | + | chr1.4:55096760-55096779 | MS.gene24052:CDS | 35.0% | |
| AACTCAAAGCTCAAACTCTT+GGG | + | chr1.4:55096813-55096832 | MS.gene24052:CDS | 35.0% | |
| AAGGGAGAACCTACTAATAA+AGG | + | chr1.4:55096862-55096881 | MS.gene24052:CDS | 35.0% | |
| ACAGTGGATGTTAATTGGAT+CGG | + | chr1.4:55096210-55096229 | MS.gene24052:intron | 35.0% | |
| ACATGGTAGAAATATCCCTA+AGG | - | chr1.4:55095757-55095776 | None:intergenic | 35.0% | |
| ACTCAAAAGACATCAGAGAT+TGG | + | chr1.4:55096583-55096602 | MS.gene24052:CDS | 35.0% | |
| AGTCATATTCATATCTACGG+AGG | - | chr1.4:55095440-55095459 | None:intergenic | 35.0% | |
| ATCAAAAAAATGGAAGCTGG+TGG | + | chr1.4:55094830-55094849 | MS.gene24052:CDS | 35.0% | |
| CATGACTCGTAGAAAAACAA+AGG | - | chr1.4:55095408-55095427 | None:intergenic | 35.0% | |
| CGGAGTCATATTCATATCTA+CGG | - | chr1.4:55095443-55095462 | None:intergenic | 35.0% | |
| GAAGAGAACAATCTTCATCA+GGG | + | chr1.4:55096782-55096801 | MS.gene24052:CDS | 35.0% | |
| GATTTCAATCAAGGGAACAA+AGG | + | chr1.4:55096742-55096761 | MS.gene24052:CDS | 35.0% | |
| GTAACAATATCCGTTTCCTT+CGG | - | chr1.4:55094896-55094915 | None:intergenic | 35.0% | |
| GTATTCTATTCCGAAGGAAA+CGG | + | chr1.4:55094883-55094902 | MS.gene24052:CDS | 35.0% | |
| TCAGAACAGTGGATGTTAAT+TGG | + | chr1.4:55096205-55096224 | MS.gene24052:intron | 35.0% | |
| TCATCTAATAAGAAAGCTGC+TGG | + | chr1.4:55097069-55097088 | MS.gene24052:CDS | 35.0% | |
| TGATAGAAATGGCTACTATC+AGG | + | chr1.4:55096720-55096739 | MS.gene24052:CDS | 35.0% | |
| TGATGTGTGATTGACAATAC+TGG | + | chr1.4:55095965-55095984 | MS.gene24052:intron | 35.0% | |
| TGGGATAATGCAAAAGATGA+TGG | + | chr1.4:55097024-55097043 | MS.gene24052:CDS | 35.0% | |
| TTCCTTCGGAATAGAATACT+TGG | - | chr1.4:55094882-55094901 | None:intergenic | 35.0% | |
| ! | AGAATTTAGGTTCAAAGGGA+AGG | + | chr1.4:55095008-55095027 | MS.gene24052:CDS | 35.0% |
| ! | ATGACTTTTAGCATAGTGTG+GGG | + | chr1.4:55096250-55096269 | MS.gene24052:intron | 35.0% |
| ! | GAAGGAGAATTTAGGTTCAA+AGG | + | chr1.4:55095003-55095022 | MS.gene24052:CDS | 35.0% |
| ! | GGAGTTGATCCTTTATTAGT+AGG | - | chr1.4:55096874-55096893 | None:intergenic | 35.0% |
| !! | GATTTTAGGAATTTGAACGG+CGG | + | chr1.4:55095130-55095149 | MS.gene24052:CDS | 35.0% |
| !! | GGGGATTTTAGGAATTTGAA+CGG | + | chr1.4:55095127-55095146 | MS.gene24052:CDS | 35.0% |
| !! | TGCTAACTGTTTGCTTTTCA+CGG | + | chr1.4:55096445-55096464 | MS.gene24052:intron | 35.0% |
| !!! | ATTTTTTGCGAAGAAGATGG+CGG | + | chr1.4:55095234-55095253 | MS.gene24052:CDS | 35.0% |
| !!! | TAGCTGTTTTTCGAATTCCA+CGG | - | chr1.4:55095841-55095860 | None:intergenic | 35.0% |
| AAGAAAGCTGCTGGACATAA+TGG | + | chr1.4:55097078-55097097 | MS.gene24052:CDS | 40.0% | |
| AAGGACATGGGGTTTAATGA+AGG | + | chr1.4:55096609-55096628 | MS.gene24052:CDS | 40.0% | |
| AGAAAGCTGCTGGACATAAT+GGG | + | chr1.4:55097079-55097098 | MS.gene24052:CDS | 40.0% | |
| AGCTGTTGAATGAGGTCAAT+AGG | + | chr1.4:55096281-55096300 | MS.gene24052:intron | 40.0% | |
| AGGACATGGGGTTTAATGAA+GGG | + | chr1.4:55096610-55096629 | MS.gene24052:CDS | 40.0% | |
| AGTACCTTCATGATTGTCTC+TGG | + | chr1.4:55096408-55096427 | MS.gene24052:intron | 40.0% | |
| AGTTTATCGTGATCGGATTC+AGG | + | chr1.4:55094940-55094959 | MS.gene24052:CDS | 40.0% | |
| ATTGGGACCACAAAGATTCT+AGG | + | chr1.4:55096944-55096963 | MS.gene24052:CDS | 40.0% | |
| ATTGGGGCCAAAAAGATAGT+TGG | + | chr1.4:55096839-55096858 | MS.gene24052:CDS | 40.0% | |
| CAACCAGCATCATTATTGTG+GGG | - | chr1.4:55096997-55097016 | None:intergenic | 40.0% | |
| CAACTCCTTATTCATCTGGT+GGG | + | chr1.4:55096887-55096906 | MS.gene24052:CDS | 40.0% | |
| CCAACCAGCATCATTATTGT+GGG | - | chr1.4:55096998-55097017 | None:intergenic | 40.0% | |
| CCTAAATTCTCCTTCACAAC+CGG | - | chr1.4:55094998-55095017 | None:intergenic | 40.0% | |
| CTAGTATGCTATAGCACTAC+AGG | - | chr1.4:55095915-55095934 | None:intergenic | 40.0% | |
| CTGCTTCAGTTTATCGTGAT+CGG | + | chr1.4:55094933-55094952 | MS.gene24052:CDS | 40.0% | |
| CTTCCTTCCTAGAATCTTTG+TGG | - | chr1.4:55096954-55096973 | None:intergenic | 40.0% | |
| GCTATCTGATAACACTGTAG+TGG | - | chr1.4:55095810-55095829 | None:intergenic | 40.0% | |
| GCTGTTGAATGAGGTCAATA+GGG | + | chr1.4:55096282-55096301 | MS.gene24052:intron | 40.0% | |
| GGAAGAGAACAATCTTCATC+AGG | + | chr1.4:55096781-55096800 | MS.gene24052:CDS | 40.0% | |
| GGATCAACTCCTTATTCATC+TGG | + | chr1.4:55096883-55096902 | MS.gene24052:CDS | 40.0% | |
| GGCCAAAAAGATAGTTGGAA+GGG | + | chr1.4:55096844-55096863 | MS.gene24052:CDS | 40.0% | |
| TAGAGGAAAGCTGTTGAATG+AGG | + | chr1.4:55096273-55096292 | MS.gene24052:intron | 40.0% | |
| TATTTATTCGCGGTCGCAAT+TGG | + | chr1.4:55095186-55095205 | MS.gene24052:CDS | 40.0% | |
| TCAACTCCTTATTCATCTGG+TGG | + | chr1.4:55096886-55096905 | MS.gene24052:CDS | 40.0% | |
| TCGGAATAGAATACTTGGCA+AGG | - | chr1.4:55094877-55094896 | None:intergenic | 40.0% | |
| TGCCAAGTATTCTATTCCGA+AGG | + | chr1.4:55094877-55094896 | MS.gene24052:CDS | 40.0% | |
| TTCAATCAAGGGAACAAAGG+AGG | + | chr1.4:55096745-55096764 | MS.gene24052:CDS | 40.0% | |
| TTCATGTGCTTAGAATGCTC+CGG | + | chr1.4:55094734-55094753 | MS.gene24052:CDS | 40.0% | |
| ! | AGACATCAGAGATTGGTCAA+AGG | + | chr1.4:55096590-55096609 | MS.gene24052:CDS | 40.0% |
| ! | AGAGATTGGTCAAAGGACAT+GGG | + | chr1.4:55096597-55096616 | MS.gene24052:CDS | 40.0% |
| ! | CCACAATAATGATGCTGGTT+GGG | + | chr1.4:55096996-55097015 | MS.gene24052:CDS | 40.0% |
| ! | CTCCCTTCCAACTATCTTTT+TGG | - | chr1.4:55096849-55096868 | None:intergenic | 40.0% |
| ! | TCTTTGTTTCAGGTCAAGGA+AGG | + | chr1.4:55096520-55096539 | MS.gene24052:intron | 40.0% |
| ! | TTGCTCTTTGTTTCAGGTCA+AGG | + | chr1.4:55096516-55096535 | MS.gene24052:intron | 40.0% |
| !! | GCTTTTCACGGTATTTTTGC+TGG | + | chr1.4:55096457-55096476 | MS.gene24052:intron | 40.0% |
| !!! | GGGATTTTTTGCGAAGAAGA+TGG | + | chr1.4:55095231-55095250 | MS.gene24052:CDS | 40.0% |
| AAATCAGATGACGCTTGGAC+AGG | + | chr1.4:55097102-55097121 | MS.gene24052:CDS | 45.0% | |
| AAATTCTCCTTCACAACCGG+AGG | - | chr1.4:55094995-55095014 | None:intergenic | 45.0% | |
| AATCAGATGACGCTTGGACA+GGG | + | chr1.4:55097103-55097122 | MS.gene24052:CDS | 45.0% | |
| ACGATAAACTGAAGCAGCGT+TGG | - | chr1.4:55094930-55094949 | None:intergenic | 45.0% | |
| ATGGGAAATCAGATGACGCT+TGG | + | chr1.4:55097097-55097116 | MS.gene24052:CDS | 45.0% | |
| CCCAACCAGCATCATTATTG+TGG | - | chr1.4:55096999-55097018 | None:intergenic | 45.0% | |
| CCCACAATAATGATGCTGGT+TGG | + | chr1.4:55096995-55097014 | MS.gene24052:CDS | 45.0% | |
| CCGGTTGTGAAGGAGAATTT+AGG | + | chr1.4:55094995-55095014 | MS.gene24052:CDS | 45.0% | |
| CGACGGAGGATATTTATTCG+CGG | + | chr1.4:55095176-55095195 | MS.gene24052:CDS | 45.0% | |
| CTCAAACTCTTGGGACGATT+GGG | + | chr1.4:55096822-55096841 | MS.gene24052:CDS | 45.0% | |
| CTCTCAGAAGAATCCACAGT+GGG | + | chr1.4:55094691-55094710 | MS.gene24052:CDS | 45.0% | |
| GACATGGGGTTTAATGAAGG+GGG | + | chr1.4:55096612-55096631 | MS.gene24052:CDS | 45.0% | |
| GATGCCAGAGACAATCATGA+AGG | - | chr1.4:55096415-55096434 | None:intergenic | 45.0% | |
| GGAAGGCGGTTATGATCAAA+AGG | + | chr1.4:55096537-55096556 | MS.gene24052:CDS | 45.0% | |
| GGACATGGGGTTTAATGAAG+GGG | + | chr1.4:55096611-55096630 | MS.gene24052:CDS | 45.0% | |
| GGGCCAAAAAGATAGTTGGA+AGG | + | chr1.4:55096843-55096862 | MS.gene24052:CDS | 45.0% | |
| GTTTCACGGAATGCACCTTA+GGG | + | chr1.4:55095739-55095758 | MS.gene24052:intron | 45.0% | |
| TAAGCACATGAAGATGCCGT+AGG | - | chr1.4:55094726-55094745 | None:intergenic | 45.0% | |
| TACTCACAATCCCAGCTCTT+GGG | + | chr1.4:55096918-55096937 | MS.gene24052:CDS | 45.0% | |
| TCAAACTCTTGGGACGATTG+GGG | + | chr1.4:55096823-55096842 | MS.gene24052:CDS | 45.0% | |
| TCAGATAGCTGATATAGCCG+TGG | + | chr1.4:55095821-55095840 | MS.gene24052:intron | 45.0% | |
| TCTCGGCATATCACAAATCG+TGG | - | chr1.4:55095868-55095887 | None:intergenic | 45.0% | |
| TGATGTGAGGAGTAAGTCGA+CGG | + | chr1.4:55095105-55095124 | MS.gene24052:CDS | 45.0% | |
| TGTTTCACGGAATGCACCTT+AGG | + | chr1.4:55095738-55095757 | MS.gene24052:intron | 45.0% | |
| TTTAGCATAGTGTGGGGTAG+AGG | + | chr1.4:55096256-55096275 | MS.gene24052:intron | 45.0% | |
| TTTAGGAATTTGAACGGCGG+TGG | + | chr1.4:55095133-55095152 | MS.gene24052:CDS | 45.0% | |
| ! | AATAATGATGCTGGTTGGGC+TGG | + | chr1.4:55097000-55097019 | MS.gene24052:CDS | 45.0% |
| ! | CAGAGATTGGTCAAAGGACA+TGG | + | chr1.4:55096596-55096615 | MS.gene24052:CDS | 45.0% |
| ! | GAGATTGGTCAAAGGACATG+GGG | + | chr1.4:55096598-55096617 | MS.gene24052:CDS | 45.0% |
| ! | GGACCACAAAGATTCTAGGA+AGG | + | chr1.4:55096948-55096967 | MS.gene24052:CDS | 45.0% |
| ! | GGGGATTGGTAAGTTGTCAT+TGG | + | chr1.4:55095590-55095609 | MS.gene24052:intron | 45.0% |
| ! | TGATCGGATTCAGGCTTTGT+CGG | + | chr1.4:55094949-55094968 | MS.gene24052:CDS | 45.0% |
| ! | TGTGGATTGCTCCTTTGTGA+AGG | - | chr1.4:55095334-55095353 | None:intergenic | 45.0% |
| ! | TTGCTCCTTTGTGAAGGCAT+CGG | - | chr1.4:55095328-55095347 | None:intergenic | 45.0% |
| ! | TTGTTTCAGGTCAAGGAAGG+CGG | + | chr1.4:55096523-55096542 | MS.gene24052:intron | 45.0% |
| ! | TTTGGCTTCACAGAAGGTTG+AGG | + | chr1.4:55096642-55096661 | MS.gene24052:CDS | 45.0% |
| !! | AGCAGCGTTGGTGTTATACT+TGG | - | chr1.4:55094918-55094937 | None:intergenic | 45.0% |
| !! | CAAAAAAAAAAAAAAAAATT+AGG | - | chr1.4:55096499-55096518 | None:intergenic | 5.0% |
| AATGAAGGGGGTCATGGCTT+TGG | + | chr1.4:55096624-55096643 | MS.gene24052:CDS | 50.0% | |
| ACATACTTCCCACCTTGCGA+CGG | - | chr1.4:55095289-55095308 | None:intergenic | 50.0% | |
| AGATGTGAACACCGAGACCA+CGG | - | chr1.4:55094766-55094785 | None:intergenic | 50.0% | |
| AGTCGCCGGAGTAATGATTC+CGG | + | chr1.4:55095046-55095065 | MS.gene24052:CDS | 50.0% | |
| ATCAGATGACGCTTGGACAG+GGG | + | chr1.4:55097104-55097123 | MS.gene24052:CDS | 50.0% | |
| ATCCCAGCTCTTGGGATGAT+TGG | + | chr1.4:55096926-55096945 | MS.gene24052:CDS | 50.0% | |
| ATCGACGCAGATCTTGTTGC+CGG | - | chr1.4:55094669-55094688 | None:intergenic | 50.0% | |
| ATGATTCCGGCTGGGATGAT+TGG | + | chr1.4:55095059-55095078 | MS.gene24052:CDS | 50.0% | |
| ATGTGAGGAGTAAGTCGACG+GGG | + | chr1.4:55095107-55095126 | MS.gene24052:CDS | 50.0% | |
| CTAGTCCGATGCCTTCACAA+AGG | + | chr1.4:55095320-55095339 | MS.gene24052:CDS | 50.0% | |
| GACTGCCCACCAGATGAATA+AGG | - | chr1.4:55096895-55096914 | None:intergenic | 50.0% | |
| GATGATTGGGATAGGGAAGG+AGG | + | chr1.4:55095073-55095092 | MS.gene24052:CDS | 50.0% | |
| GATGTGAGGAGTAAGTCGAC+GGG | + | chr1.4:55095106-55095125 | MS.gene24052:CDS | 50.0% | |
| GATTTCGGACCAAGCATCCA+TGG | - | chr1.4:55094807-55094826 | None:intergenic | 50.0% | |
| GCTCAAACTCTTGGGACGAT+TGG | + | chr1.4:55096821-55096840 | MS.gene24052:CDS | 50.0% | |
| GCTCCCCACAATAATGATGC+TGG | + | chr1.4:55096991-55097010 | MS.gene24052:CDS | 50.0% | |
| GCTCTCAGAAGAATCCACAG+TGG | + | chr1.4:55094690-55094709 | MS.gene24052:CDS | 50.0% | |
| GCTGCTAATGCTGTTCAGAC+TGG | + | chr1.4:55095624-55095643 | MS.gene24052:CDS | 50.0% | |
| GGGTTTAATGAAGGGGGTCA+TGG | + | chr1.4:55096618-55096637 | MS.gene24052:CDS | 50.0% | |
| GTACTCACAATCCCAGCTCT+TGG | + | chr1.4:55096917-55096936 | MS.gene24052:CDS | 50.0% | |
| GTCGCAATTGGAAGCTTCTG+CGG | + | chr1.4:55095198-55095217 | MS.gene24052:CDS | 50.0% | |
| TCCCAATCATCCCAAGAGCT+GGG | - | chr1.4:55096931-55096950 | None:intergenic | 50.0% | |
| TCCCAGCTCTTGGGATGATT+GGG | + | chr1.4:55096927-55096946 | MS.gene24052:CDS | 50.0% | |
| TGATTCCGGCTGGGATGATT+GGG | + | chr1.4:55095060-55095079 | MS.gene24052:CDS | 50.0% | |
| TGGGATGATTGGGATAGGGA+AGG | + | chr1.4:55095070-55095089 | MS.gene24052:CDS | 50.0% | |
| TTGGGATAGGGAAGGAGGTT+CGG | + | chr1.4:55095078-55095097 | MS.gene24052:CDS | 50.0% | |
| ! | ATCCACTGTTCTGAGCAACG+AGG | - | chr1.4:55096199-55096218 | None:intergenic | 50.0% |
| ! | CGCAAGGTGGGAAGTATGTT+GGG | + | chr1.4:55095290-55095309 | MS.gene24052:CDS | 50.0% |
| ! | GGTGGGAAGTATGTTGGGTT+CGG | + | chr1.4:55095295-55095314 | MS.gene24052:CDS | 50.0% |
| ! | GTAAGTCGACGGGGGATTTT+AGG | + | chr1.4:55095116-55095135 | MS.gene24052:CDS | 50.0% |
| ! | TATTCATCTGGTGGGCAGTC+TGG | + | chr1.4:55096895-55096914 | MS.gene24052:CDS | 50.0% |
| ! | TCGCAAGGTGGGAAGTATGT+TGG | + | chr1.4:55095289-55095308 | MS.gene24052:CDS | 50.0% |
| ! | TTCAGGCTTTGTCGGAAGGT+CGG | + | chr1.4:55094957-55094976 | MS.gene24052:CDS | 50.0% |
| !! | AAGCATCCATGGTGACGGAT+CGG | - | chr1.4:55094796-55094815 | None:intergenic | 50.0% |
| !! | AGATGGCGGAGAATGAGTCA+AGG | + | chr1.4:55095248-55095267 | MS.gene24052:CDS | 50.0% |
| !! | CATGGCTTTGGCTTCACAGA+AGG | + | chr1.4:55096636-55096655 | MS.gene24052:CDS | 50.0% |
| AGCATGCACACACACACACC+CGG | - | chr1.4:55095509-55095528 | None:intergenic | 55.0% | |
| CAATTGGAAGCTTCTGCGGC+GGG | + | chr1.4:55095202-55095221 | MS.gene24052:CDS | 55.0% | |
| CAGTGGGCATCAGTCTCCTA+CGG | + | chr1.4:55094707-55094726 | MS.gene24052:CDS | 55.0% | |
| CCCAGCCGGAATCATTACTC+CGG | - | chr1.4:55095054-55095073 | None:intergenic | 55.0% | |
| CCGGAGTAATGATTCCGGCT+GGG | + | chr1.4:55095051-55095070 | MS.gene24052:CDS | 55.0% | |
| CCTATCCCAATCATCCCAGC+CGG | - | chr1.4:55095068-55095087 | None:intergenic | 55.0% | |
| CGGCTGGGATGATTGGGATA+GGG | + | chr1.4:55095066-55095085 | MS.gene24052:CDS | 55.0% | |
| GAATGCTCCGGAAAACACCG+TGG | + | chr1.4:55094746-55094765 | MS.gene24052:CDS | 55.0% | |
| GAGAATGAGTCAAGGCCGGA+AGG | + | chr1.4:55095256-55095275 | MS.gene24052:CDS | 55.0% | |
| GATCCGTCACCATGGATGCT+TGG | + | chr1.4:55094795-55094814 | MS.gene24052:CDS | 55.0% | |
| GCAATTGGAAGCTTCTGCGG+CGG | + | chr1.4:55095201-55095220 | MS.gene24052:CDS | 55.0% | |
| GCAGATCTTGTTGCCGGGTT+GGG | - | chr1.4:55094663-55094682 | None:intergenic | 55.0% | |
| GGACCAAGCATCCATGGTGA+CGG | - | chr1.4:55094801-55094820 | None:intergenic | 55.0% | |
| GTCCCAATCATCCCAAGAGC+TGG | - | chr1.4:55096932-55096951 | None:intergenic | 55.0% | |
| TAGGAGACTGATGCCCACTG+TGG | - | chr1.4:55094707-55094726 | None:intergenic | 55.0% | |
| TCAGATGACGCTTGGACAGG+GGG | + | chr1.4:55097105-55097124 | MS.gene24052:CDS | 55.0% | |
| TCCGGAAAACACCGTGGTCT+CGG | + | chr1.4:55094752-55094771 | MS.gene24052:CDS | 55.0% | |
| TCGACGCAGATCTTGTTGCC+GGG | - | chr1.4:55094668-55094687 | None:intergenic | 55.0% | |
| TGCCTCGTTGCTCAGAACAG+TGG | + | chr1.4:55096194-55096213 | MS.gene24052:intron | 55.0% | |
| TGGGATAGGGAAGGAGGTTC+GGG | + | chr1.4:55095079-55095098 | MS.gene24052:CDS | 55.0% | |
| TGGGGAGCTGATGCTTTAGC+TGG | - | chr1.4:55096979-55096998 | None:intergenic | 55.0% | |
| TGTGAGGAGTAAGTCGACGG+GGG | + | chr1.4:55095108-55095127 | MS.gene24052:CDS | 55.0% | |
| ! | ACCGAGACCACGGTGTTTTC+CGG | - | chr1.4:55094756-55094775 | None:intergenic | 55.0% |
| ! | CGGATTCAGGCTTTGTCGGA+AGG | + | chr1.4:55094953-55094972 | MS.gene24052:CDS | 55.0% |
| ! | TACCGGTGTCAGTGTTGTGC+CGG | + | chr1.4:55095487-55095506 | MS.gene24052:intron | 55.0% |
| ! | TGTTGCCGGGTTGGGATTGA+AGG | - | chr1.4:55094655-55094674 | None:intergenic | 55.0% |
| ACCCGGCACAACACTGACAC+CGG | - | chr1.4:55095492-55095511 | None:intergenic | 60.0% | |
| AGCTTCTGCGGCGGGTAAAG+AGG | + | chr1.4:55095210-55095229 | MS.gene24052:CDS | 60.0% | |
| CCGGCTGGGATGATTGGGAT+AGG | + | chr1.4:55095065-55095084 | MS.gene24052:CDS | 60.0% | |
| CGCAGATCTTGTTGCCGGGT+TGG | - | chr1.4:55094664-55094683 | None:intergenic | 60.0% | |
| CGGGACCTTCAATCCCAACC+CGG | + | chr1.4:55094647-55094666 | MS.gene24052:CDS | 60.0% | |
| CTTCGTCCGATCCGTCACCA+TGG | + | chr1.4:55094787-55094806 | MS.gene24052:CDS | 60.0% | |
| CTTTGTCGGAAGGTCGGTCG+TGG | + | chr1.4:55094963-55094982 | MS.gene24052:CDS | 60.0% | |
| GAAGGACTTCCACCGTCGCA+AGG | + | chr1.4:55095274-55095293 | MS.gene24052:CDS | 60.0% | |
| GACTTCCACCGTCGCAAGGT+GGG | + | chr1.4:55095278-55095297 | MS.gene24052:CDS | 60.0% | |
| GATAGGGAAGGAGGTTCGGG+TGG | + | chr1.4:55095082-55095101 | MS.gene24052:CDS | 60.0% | |
| GCCGGAGTAATGATTCCGGC+TGG | + | chr1.4:55095050-55095069 | MS.gene24052:CDS | 60.0% | |
| GCGTGATCCTCCGGTTGTGA+AGG | + | chr1.4:55094985-55095004 | MS.gene24052:CDS | 60.0% | |
| GCTTCTGCGGCGGGTAAAGA+GGG | + | chr1.4:55095211-55095230 | MS.gene24052:CDS | 60.0% | |
| GGCGGAGAATGAGTCAAGGC+CGG | + | chr1.4:55095252-55095271 | MS.gene24052:CDS | 60.0% | |
| TACTTCCCACCTTGCGACGG+TGG | - | chr1.4:55095286-55095305 | None:intergenic | 60.0% | |
| TCAAAGGGAAGGCCGCCGAT+GGG | + | chr1.4:55095019-55095038 | MS.gene24052:CDS | 60.0% | |
| TGCGACGGTGGAAGTCCTTC+CGG | - | chr1.4:55095274-55095293 | None:intergenic | 60.0% | |
| TTCAAAGGGAAGGCCGCCGA+TGG | + | chr1.4:55095018-55095037 | MS.gene24052:CDS | 60.0% | |
| TTTGAACGGCGGTGGTGCAC+CGG | + | chr1.4:55095141-55095160 | MS.gene24052:CDS | 60.0% | |
| ! | ACCGGTGTCAGTGTTGTGCC+GGG | + | chr1.4:55095488-55095507 | MS.gene24052:intron | 60.0% |
| ! | CGGGTTGGGATTGAAGGTCC+CGG | - | chr1.4:55094649-55094668 | None:intergenic | 60.0% |
| ! | GAGGTTCGGGTGGTGATGTG+AGG | + | chr1.4:55095092-55095111 | MS.gene24052:CDS | 60.0% |
| !! | ATGATGCTGGTTGGGCTGGC+TGG | + | chr1.4:55097004-55097023 | MS.gene24052:CDS | 60.0% |
| !! | CATGGTGACGGATCGGACGA+AGG | - | chr1.4:55094789-55094808 | None:intergenic | 60.0% |
| !! | TGATGCTGGTTGGGCTGGCT+GGG | + | chr1.4:55097005-55097024 | MS.gene24052:CDS | 60.0% |
| ACCGGCGAGATCGAGGTCGA+CGG | + | chr1.4:55095159-55095178 | MS.gene24052:CDS | 65.0% | |
| CAAAGGGAAGGCCGCCGATG+GGG | + | chr1.4:55095020-55095039 | MS.gene24052:CDS | 65.0% | |
| GATGACGCTTGGACAGGGGG+TGG | + | chr1.4:55097108-55097127 | MS.gene24052:CDS | 65.0% | |
| GGACTTCCACCGTCGCAAGG+TGG | + | chr1.4:55095277-55095296 | MS.gene24052:CDS | 65.0% | |
| TCCGTCGACCTCGATCTCGC+CGG | - | chr1.4:55095163-55095182 | None:intergenic | 65.0% | |
| TCGGTCGTGGCGTGATCCTC+CGG | + | chr1.4:55094976-55094995 | MS.gene24052:CDS | 65.0% | |
| CTCCGGCGACTCTGCCCCAT+CGG | - | chr1.4:55095037-55095056 | None:intergenic | 70.0% | |
| GGCGAGATCGAGGTCGACGG+AGG | + | chr1.4:55095162-55095181 | MS.gene24052:CDS | 70.0% | |
| ! | GTGGTGCACCGGCGAGATCG+AGG | + | chr1.4:55095152-55095171 | MS.gene24052:CDS | 70.0% |
| CGCCGATGGGGCAGAGTCGC+CGG | + | chr1.4:55095032-55095051 | MS.gene24052:CDS | 75.0% | |
| CGGCGACTCTGCCCCATCGG+CGG | - | chr1.4:55095034-55095053 | None:intergenic | 75.0% | |
| TGGCGGCATCACGGCGGCTC+CGG | + | chr1.4:55094627-55094646 | MS.gene24052:CDS | 75.0% | |
| ! | GGCGGCATCACGGCGGCTCC+GGG | + | chr1.4:55094628-55094647 | MS.gene24052:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 55094626 | 55097140 | 55094626 | ID=MS.gene24052 |
| chr1.4 | mRNA | 55094626 | 55097140 | 55094626 | ID=MS.gene24052.t1;Parent=MS.gene24052 |
| chr1.4 | exon | 55094626 | 55095384 | 55094626 | ID=MS.gene24052.t1.exon1;Parent=MS.gene24052.t1 |
| chr1.4 | CDS | 55094626 | 55095384 | 55094626 | ID=cds.MS.gene24052.t1;Parent=MS.gene24052.t1 |
| chr1.4 | exon | 55095591 | 55095668 | 55095591 | ID=MS.gene24052.t1.exon2;Parent=MS.gene24052.t1 |
| chr1.4 | CDS | 55095591 | 55095668 | 55095591 | ID=cds.MS.gene24052.t1;Parent=MS.gene24052.t1 |
| chr1.4 | exon | 55096532 | 55097140 | 55096532 | ID=MS.gene24052.t1.exon3;Parent=MS.gene24052.t1 |
| chr1.4 | CDS | 55096532 | 55097140 | 55096532 | ID=cds.MS.gene24052.t1;Parent=MS.gene24052.t1 |
| Gene Sequence |
| Protein sequence |
