Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25174.t1 | XP_013466590.1 | 99.5 | 611 | 3 | 0 | 1 | 611 | 1 | 611 | 6.90E-258 | 899.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25174.t1 | Q8L7S4 | 78.4 | 602 | 119 | 7 | 18 | 611 | 36 | 634 | 1.9e-176 | 620.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25174.t1 | A0A072VGA0 | 99.5 | 611 | 3 | 0 | 1 | 611 | 1 | 611 | 5.0e-258 | 899.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25174 | 0.848021 | 7.99E-60 | -1.69E-46 |
| MS.gene049166 | MS.gene25174 | 0.81421 | 1.73E-51 | -1.69E-46 |
| MS.gene049178 | MS.gene25174 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene25174 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene049382 | MS.gene25174 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene25174 | 0.815492 | 8.99E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene25174 | 0.85013 | 2.07E-60 | -1.69E-46 |
| MS.gene050084 | MS.gene25174 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene25174 | 0.832538 | 8.93E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene25174 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene25174 | 0.823327 | 1.47E-53 | -1.69E-46 |
| MS.gene050384 | MS.gene25174 | 0.810671 | 1.03E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene25174 | 0.8184 | 2.00E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene25174 | 0.827094 | 1.89E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene25174 | 0.835148 | 1.99E-56 | -1.69E-46 |
| MS.gene050762 | MS.gene25174 | 0.842159 | 3.07E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene25174 | 0.840237 | 9.82E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene25174 | 0.808936 | 2.42E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene25174 | 0.835389 | 1.73E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene25174 | 0.856107 | 4.02E-62 | -1.69E-46 |
| MS.gene051343 | MS.gene25174 | 0.831054 | 2.07E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene25174 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene25174 | 0.838295 | 3.13E-57 | -1.69E-46 |
| MS.gene052397 | MS.gene25174 | 0.839709 | 1.35E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene25174 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene25174 | 0.844606 | 6.81E-59 | -1.69E-46 |
| MS.gene052665 | MS.gene25174 | 0.836671 | 8.16E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene25174 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene25174 | 0.804639 | 1.96E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene25174 | 0.810382 | 1.18E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene25174 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene25174 | 0.811197 | 7.90E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene25174 | 0.805131 | 1.55E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene25174 | 0.822303 | 2.55E-53 | -1.69E-46 |
| MS.gene054823 | MS.gene25174 | 0.822895 | 1.85E-53 | -1.69E-46 |
| MS.gene054824 | MS.gene25174 | 0.819457 | 1.15E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene25174 | 0.847234 | 1.32E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene25174 | 0.840835 | 6.85E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene25174 | 0.842096 | 3.19E-58 | -1.69E-46 |
| MS.gene055469 | MS.gene25174 | 0.818954 | 1.50E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene25174 | 0.815905 | 7.27E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene25174 | 0.81959 | 1.07E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene25174 | 0.811576 | 6.53E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene25174 | 0.873703 | 1.20E-67 | -1.69E-46 |
| MS.gene056308 | MS.gene25174 | 0.82412 | 9.59E-54 | -1.69E-46 |
| MS.gene056390 | MS.gene25174 | 0.806411 | 8.34E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene25174 | 0.843943 | 1.03E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene25174 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene056760 | MS.gene25174 | 0.80257 | 5.27E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene25174 | 0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene057057 | MS.gene25174 | 0.811132 | 8.16E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene25174 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene25174 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene057446 | MS.gene25174 | 0.823196 | 1.58E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene25174 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene25174 | 0.805728 | 1.16E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene25174 | 0.806653 | 7.41E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene25174 | 0.877321 | 6.90E-69 | -1.69E-46 |
| MS.gene058639 | MS.gene25174 | 0.886527 | 3.17E-72 | -1.69E-46 |
| MS.gene058646 | MS.gene25174 | 0.830215 | 3.33E-55 | -1.69E-46 |
| MS.gene058654 | MS.gene25174 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene25174 | 0.82298 | 1.77E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene25174 | 0.836261 | 1.04E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene25174 | 0.868946 | 4.47E-66 | -1.69E-46 |
| MS.gene059713 | MS.gene25174 | 0.831646 | 1.48E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene25174 | 0.827764 | 1.31E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene25174 | 0.815666 | 8.23E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene25174 | 0.813378 | 2.64E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene25174 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene25174 | 0.826645 | 2.42E-54 | -1.69E-46 |
| MS.gene060400 | MS.gene25174 | 0.815443 | 9.22E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene25174 | 0.821398 | 4.13E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene25174 | 0.855111 | 7.86E-62 | -1.69E-46 |
| MS.gene060869 | MS.gene25174 | 0.830674 | 2.57E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene25174 | 0.840621 | 7.79E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene25174 | 0.851879 | 6.66E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25174.t1 | MTR_1g032520 | 99.509 | 611 | 3 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1228 |
| MS.gene25174.t1 | MTR_8g021120 | 87.358 | 617 | 69 | 4 | 1 | 611 | 1 | 614 | 0.0 | 1012 |
| MS.gene25174.t1 | MTR_8g105350 | 82.630 | 616 | 102 | 2 | 1 | 611 | 1 | 616 | 0.0 | 1001 |
| MS.gene25174.t1 | MTR_2g026590 | 47.920 | 553 | 246 | 9 | 52 | 582 | 13 | 545 | 2.09e-147 | 437 |
| MS.gene25174.t1 | MTR_4g133890 | 48.785 | 535 | 249 | 6 | 51 | 568 | 17 | 543 | 7.58e-147 | 436 |
| MS.gene25174.t1 | MTR_4g133890 | 48.785 | 535 | 249 | 6 | 51 | 568 | 25 | 551 | 2.72e-146 | 436 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25174.t1 | AT1G68060 | 74.485 | 631 | 132 | 10 | 1 | 611 | 1 | 622 | 0.0 | 903 |
| MS.gene25174.t1 | AT1G24764 | 73.469 | 637 | 140 | 9 | 1 | 611 | 1 | 634 | 0.0 | 893 |
| MS.gene25174.t1 | AT1G24764 | 73.469 | 637 | 140 | 9 | 1 | 611 | 60 | 693 | 0.0 | 891 |
| MS.gene25174.t1 | AT1G14840 | 72.623 | 610 | 150 | 9 | 9 | 611 | 5 | 604 | 0.0 | 830 |
| MS.gene25174.t1 | AT2G01750 | 74.167 | 600 | 139 | 9 | 21 | 611 | 37 | 629 | 0.0 | 828 |
| MS.gene25174.t1 | AT2G01750 | 74.043 | 601 | 139 | 10 | 21 | 611 | 37 | 630 | 0.0 | 825 |
| MS.gene25174.t1 | AT1G14840 | 70.328 | 610 | 149 | 10 | 9 | 611 | 5 | 589 | 0.0 | 788 |
| MS.gene25174.t1 | AT1G24764 | 78.099 | 484 | 99 | 5 | 132 | 611 | 1 | 481 | 0.0 | 748 |
| MS.gene25174.t1 | AT4G17220 | 47.104 | 518 | 234 | 9 | 52 | 566 | 6 | 486 | 3.82e-135 | 405 |
Find 144 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGAGGCGGATGATAAT+TGG | 0.234084 | 1.3:+17431905 | MS.gene25174:CDS |
| TGGTTCTGAGCACTGTTTAC+AGG | 0.234770 | 1.3:-17432345 | None:intergenic |
| CGAAGCAATTCTTGCTCCTT+TGG | 0.241876 | 1.3:+17430436 | MS.gene25174:CDS |
| CTTTGGTTTCTTCGAAAGAT+TGG | 0.272973 | 1.3:-17431882 | None:intergenic |
| TTCAAGTAGTGCAGCTTCTT+TGG | 0.279011 | 1.3:-17430659 | None:intergenic |
| TTCTAGCTCCCTCACAGTTT+GGG | 0.281893 | 1.3:-17430945 | None:intergenic |
| GCTCAGAACCAGCTAATTTC+TGG | 0.284801 | 1.3:+17432357 | MS.gene25174:CDS |
| TGCCTCAACTTCCATGGCTT+TGG | 0.286023 | 1.3:-17432217 | None:intergenic |
| CTTCTAGCTCCCTCACAGTT+TGG | 0.287805 | 1.3:-17430946 | None:intergenic |
| ATCATCCGCCTCTCTCTCTT+TGG | 0.291625 | 1.3:-17431899 | None:intergenic |
| ATCTCAAAATTAACCTCTAA+TGG | 0.292039 | 1.3:+17431694 | MS.gene25174:CDS |
| TACCCTGTTTGCTGTTACCT+TGG | 0.315274 | 1.3:-17431168 | None:intergenic |
| TGAGGGGATGGTGTTCTCTT+AGG | 0.322150 | 1.3:-17431724 | None:intergenic |
| TCTCTAAACGATCCAGAAAA+TGG | 0.341450 | 1.3:-17427010 | None:intergenic |
| CTTAGGCAAGAATCCATTAG+AGG | 0.344932 | 1.3:-17431707 | None:intergenic |
| GATAATTGGAAAGGAAATTC+AGG | 0.351491 | 1.3:+17431919 | MS.gene25174:CDS |
| TAGTGCAGCTTCTTTGGATT+TGG | 0.353315 | 1.3:-17430653 | None:intergenic |
| AAAGCGGTTCAGCAATATAA+AGG | 0.353628 | 1.3:+17432320 | MS.gene25174:CDS |
| ATAATAAACTCATTGTTATT+GGG | 0.357237 | 1.3:-17433418 | None:intergenic |
| TCAATATTGAGCTAGATGAT+AGG | 0.359640 | 1.3:-17431759 | None:intergenic |
| ATCATCCACCATGGAGGCCT+TGG | 0.362971 | 1.3:-17430710 | None:intergenic |
| CTAGAAGAGTCAGTCCTTGC+AGG | 0.368346 | 1.3:+17430962 | MS.gene25174:CDS |
| CAGTGAAAGTGGAGCTTAAT+CGG | 0.377411 | 1.3:+17427122 | MS.gene25174:CDS |
| TCAGGAAGAAAACAAAATCT+TGG | 0.381761 | 1.3:+17430880 | MS.gene25174:intron |
| TTCCGCTAGACAGCAGAGTA+TGG | 0.386039 | 1.3:+17427060 | MS.gene25174:CDS |
| TGAAGAGCGACGATTCTTGC+AGG | 0.386203 | 1.3:+17431256 | MS.gene25174:CDS |
| CATGAATTTGTTGCACGGTT+CGG | 0.387547 | 1.3:+17427096 | MS.gene25174:CDS |
| TCTGCCGGTGGGAAGTCATT+TGG | 0.398268 | 1.3:-17431949 | None:intergenic |
| CTTCTTTGCCTCAACTTCCA+TGG | 0.400320 | 1.3:-17432223 | None:intergenic |
| AGATAAGGATAGAGAATTAT+CGG | 0.413036 | 1.3:+17427258 | MS.gene25174:intron |
| GTGCCAAGGTAACAGCAAAC+AGG | 0.425792 | 1.3:+17431165 | MS.gene25174:CDS |
| GAAGAGCTGTCAAAGGTTGA+TGG | 0.434615 | 1.3:+17430170 | MS.gene25174:CDS |
| TGCCTTGGCCAAGGCCTCCA+TGG | 0.436711 | 1.3:+17430702 | MS.gene25174:CDS |
| ACGGCGATGGAGGAGATTTA+CGG | 0.436994 | 1.3:+17426959 | None:intergenic |
| TCTTCAAGCCATTGTTTGAC+AGG | 0.444366 | 1.3:-17431239 | None:intergenic |
| AGCAATTCTTGCTCCTTTGG+AGG | 0.447816 | 1.3:+17430439 | MS.gene25174:CDS |
| TCAATTGCGGCTCAAAGTGC+TGG | 0.456627 | 1.3:+17431564 | MS.gene25174:CDS |
| ATATGACCTCTTGCAGAAAG+AGG | 0.460005 | 1.3:+17431999 | MS.gene25174:CDS |
| TGTTCAGTTTGCCTTGGCCA+AGG | 0.461756 | 1.3:+17430693 | MS.gene25174:CDS |
| TATCAACTCCACCTAGTGAT+TGG | 0.463068 | 1.3:-17431669 | None:intergenic |
| CGGAGGAGCGGTGGCGACTC+CGG | 0.465713 | 1.3:+17426985 | MS.gene25174:CDS |
| TTTACCTTCCAGAAATTAGC+TGG | 0.469895 | 1.3:-17432365 | None:intergenic |
| CGATTAAGCTCCACTTTCAC+TGG | 0.472787 | 1.3:-17427121 | None:intergenic |
| TTGAGGCAAAGAAGATGAGA+AGG | 0.474623 | 1.3:+17432232 | MS.gene25174:CDS |
| AAGTGCTGGAGGAGAGTTTG+AGG | 0.474656 | 1.3:+17431578 | MS.gene25174:CDS |
| AAAACACTTAATAGAGAGTT+GGG | 0.481831 | 1.3:+17431140 | MS.gene25174:CDS |
| TGATGGGAAGCTAAAATTAA+CGG | 0.487466 | 1.3:+17430187 | MS.gene25174:CDS |
| ATAGGGATGACCTGAGTTGA+GGG | 0.487512 | 1.3:-17431741 | None:intergenic |
| AAAGACTGTTCAGTTTGCCT+TGG | 0.487825 | 1.3:+17430687 | MS.gene25174:CDS |
| GGTTCTGAGCACTGTTTACA+GGG | 0.494170 | 1.3:-17432344 | None:intergenic |
| CTGTCAGATGTTAGCAAGGA+AGG | 0.496607 | 1.3:+17432182 | MS.gene25174:intron |
| CACCATGGAGGCCTTGGCCA+AGG | 0.496680 | 1.3:-17430704 | None:intergenic |
| TGATGAAAAGAAAGCATCAA+TGG | 0.497269 | 1.3:+17430340 | MS.gene25174:CDS |
| CTGTTGTGGTTGCAAATGAA+TGG | 0.501031 | 1.3:+17431192 | MS.gene25174:CDS |
| GTCGTTGCCTTGAGGAAAGC+TGG | 0.505078 | 1.3:+17432021 | MS.gene25174:CDS |
| GGAAGTAGCTTCCATGGAAA+AGG | 0.509920 | 1.3:+17432254 | MS.gene25174:CDS |
| CAATATTGAGCTAGATGATA+GGG | 0.513491 | 1.3:-17431758 | None:intergenic |
| AAACTAAACACTAACCTCAA+TGG | 0.514146 | 1.3:-17432082 | None:intergenic |
| TCAATATTGAGGAGTGCTAA+AGG | 0.517695 | 1.3:+17431772 | MS.gene25174:CDS |
| TGAGGCAAAGAAGATGAGAA+GGG | 0.522446 | 1.3:+17432233 | MS.gene25174:CDS |
| TGATGGTGGCTCAAGGACAC+TGG | 0.523950 | 1.3:+17431810 | MS.gene25174:CDS |
| GACACTGGAAAGAAGTAAAA+CGG | 0.525209 | 1.3:+17431825 | MS.gene25174:CDS |
| GACAGAAATGTGACACAAAG+AGG | 0.525842 | 1.3:+17433381 | MS.gene25174:intron |
| AAGCGGTTCAGCAATATAAA+GGG | 0.526321 | 1.3:+17432321 | MS.gene25174:CDS |
| GAGAAGGGAAGTAGCTTCCA+TGG | 0.527885 | 1.3:+17432248 | MS.gene25174:CDS |
| TCTTCTCGTCGCCAATCACT+AGG | 0.528739 | 1.3:+17431658 | MS.gene25174:CDS |
| AGCAAACAGGGTAGCTGTTG+TGG | 0.529953 | 1.3:+17431178 | MS.gene25174:CDS |
| CGGTTCGGATCCAGTGAAAG+TGG | 0.533833 | 1.3:+17427111 | MS.gene25174:CDS |
| GAGGGTCCATGCTGCTCAGA+AGG | 0.534386 | 1.3:+17430394 | MS.gene25174:CDS |
| GGACAGAATGCATAGACAAA+AGG | 0.539722 | 1.3:+17430901 | MS.gene25174:CDS |
| TATCATCTAGCTCAATATTG+AGG | 0.541720 | 1.3:+17431761 | MS.gene25174:CDS |
| GAAACAGATTGAGATTTGCC+AGG | 0.542161 | 1.3:+17430759 | MS.gene25174:CDS |
| TTGCAGCAGAAGCTACTCTT+CGG | 0.548174 | 1.3:+17430372 | MS.gene25174:CDS |
| TTGCTGCTGCACCACCTGCA+AGG | 0.548940 | 1.3:-17430976 | None:intergenic |
| TGGTTGAATGAGTAACTTTG+AGG | 0.553498 | 1.3:-17431862 | None:intergenic |
| AAGAGCTGTCAAAGGTTGAT+GGG | 0.554635 | 1.3:+17430171 | MS.gene25174:CDS |
| AACGATCCAGAAAATGGTGC+CGG | 0.555391 | 1.3:-17427004 | None:intergenic |
| AGATAAAGATGATGCCATTG+AGG | 0.555603 | 1.3:+17432068 | MS.gene25174:CDS |
| AGTAGTCGCAGCACCGCAGA+GGG | 0.555775 | 1.3:+17431616 | MS.gene25174:CDS |
| TGTTTGCTGTTACCTTGGCA+CGG | 0.558804 | 1.3:-17431163 | None:intergenic |
| AGCTTTAGTTCAGCCTCCAA+AGG | 0.559013 | 1.3:-17430452 | None:intergenic |
| AGGCTGAACTAAAGCTTGCT+CGG | 0.559493 | 1.3:+17430459 | MS.gene25174:CDS |
| GCATAGACAAAAGGTGGCAG+AGG | 0.560586 | 1.3:+17430910 | MS.gene25174:CDS |
| AAGAAGTAAAACGGTGCTGA+GGG | 0.563039 | 1.3:+17431834 | MS.gene25174:CDS |
| GATAGGGATGACCTGAGTTG+AGG | 0.563988 | 1.3:-17431742 | None:intergenic |
| GCTGTCTGAAGAGCTGTCAA+AGG | 0.567280 | 1.3:+17430163 | MS.gene25174:intron |
| TAGAGAGTTGGGCCGTGCCA+AGG | 0.567676 | 1.3:+17431151 | MS.gene25174:CDS |
| ATACTATCCTCTGTATCTGC+CGG | 0.568717 | 1.3:-17431964 | None:intergenic |
| GGAGCAAGAATTGCTTCGAT+CGG | 0.572832 | 1.3:-17430431 | None:intergenic |
| CGAAGAAACCAAAGAGAGAG+AGG | 0.574885 | 1.3:+17431891 | MS.gene25174:CDS |
| GAACACCATCCCCTCAACTC+AGG | 0.581720 | 1.3:+17431731 | MS.gene25174:CDS |
| AGTGCTGGAGGAGAGTTTGA+GGG | 0.584451 | 1.3:+17431579 | MS.gene25174:CDS |
| CAGCAGAAGCTACTCTTCGG+AGG | 0.586254 | 1.3:+17430375 | MS.gene25174:CDS |
| GACCAAAGCCATGGAAGTTG+AGG | 0.587168 | 1.3:+17432215 | MS.gene25174:CDS |
| CGGCTTGAGAATGAAGTTCG+AGG | 0.589218 | 1.3:+17427142 | MS.gene25174:CDS |
| GCAAGAATTGCTTCGATCGG+AGG | 0.593352 | 1.3:-17430428 | None:intergenic |
| TTCATGACCAGCTTTCCTCA+AGG | 0.597013 | 1.3:-17432028 | None:intergenic |
| ATCCATACTCTGCTGTCTAG+CGG | 0.597253 | 1.3:-17427062 | None:intergenic |
| CAACGACCTCTTTCTGCAAG+AGG | 0.600338 | 1.3:-17432005 | None:intergenic |
| CTATCCTCTGTATCTGCCGG+TGG | 0.602400 | 1.3:-17431961 | None:intergenic |
| CAGTAGTCGCAGCACCGCAG+AGG | 0.603621 | 1.3:+17431615 | MS.gene25174:CDS |
| CATCATCCTTCTGAGCAGCA+TGG | 0.604557 | 1.3:-17430400 | None:intergenic |
| GTTCATACTTCTTCCCTCTG+CGG | 0.608964 | 1.3:-17431629 | None:intergenic |
| GATGACCTGAGTTGAGGGGA+TGG | 0.611124 | 1.3:-17431736 | None:intergenic |
| AAGCGTTGAGGCATTCTGAA+CGG | 0.613362 | 1.3:+17427299 | MS.gene25174:CDS |
| CAGAATGCATAGACAAAAGG+TGG | 0.613852 | 1.3:+17430904 | MS.gene25174:CDS |
| CTTCCCACCGGCAGATACAG+AGG | 0.614204 | 1.3:+17431957 | MS.gene25174:CDS |
| CTTGGCCAAGGCCTCCATGG+TGG | 0.617740 | 1.3:+17430705 | MS.gene25174:CDS |
| AAGAGGTCATATAAAACACT+TGG | 0.618174 | 1.3:-17431988 | None:intergenic |
| AGCAGAAGCTACTCTTCGGA+GGG | 0.619468 | 1.3:+17430376 | MS.gene25174:CDS |
| ACTAAAGCTTGCTCGGCAAG+AGG | 0.620295 | 1.3:+17430466 | MS.gene25174:CDS |
| AAAGAAGTAAAACGGTGCTG+AGG | 0.622180 | 1.3:+17431833 | MS.gene25174:CDS |
| TTACGGCGACGGAGGAGCGG+TGG | 0.622998 | 1.3:+17426976 | MS.gene25174:CDS |
| AAGTCATGCCTGTCAAACAA+TGG | 0.623263 | 1.3:+17431231 | MS.gene25174:CDS |
| GAGGCGGATGATAATTGGAA+AGG | 0.624926 | 1.3:+17431910 | MS.gene25174:CDS |
| AGATACGTTGACCAAAGCCA+TGG | 0.625101 | 1.3:+17432206 | MS.gene25174:CDS |
| AGAAAGAGGTCGTTGCCTTG+AGG | 0.625269 | 1.3:+17432013 | MS.gene25174:CDS |
| GAGGAGATTTACGGCGACGG+AGG | 0.631996 | 1.3:+17426968 | MS.gene25174:CDS |
| GTGCTGGAGGAGAGTTTGAG+GGG | 0.632505 | 1.3:+17431580 | MS.gene25174:CDS |
| TTATCTGTCAGATGTTAGCA+AGG | 0.633097 | 1.3:+17432178 | MS.gene25174:intron |
| AAAGCTCACCCAAACTGTGA+GGG | 0.633154 | 1.3:+17430937 | MS.gene25174:CDS |
| GAGTTCATGAATTTGTTGCA+CGG | 0.637392 | 1.3:+17427091 | MS.gene25174:CDS |
| AGTAGCTTCCATGGAAAAGG+AGG | 0.639443 | 1.3:+17432257 | MS.gene25174:CDS |
| AGAACCAGCTAATTTCTGGA+AGG | 0.641246 | 1.3:+17432361 | MS.gene25174:CDS |
| TGCCAAGGTAACAGCAAACA+GGG | 0.644482 | 1.3:+17431166 | MS.gene25174:CDS |
| GATTTACGGCGACGGAGGAG+CGG | 0.644818 | 1.3:+17426973 | MS.gene25174:CDS |
| ATGCAGTTAGAGATTATCAA+CGG | 0.649753 | 1.3:+17430999 | MS.gene25174:CDS |
| TATCCTCTGTATCTGCCGGT+GGG | 0.651445 | 1.3:-17431960 | None:intergenic |
| GAAGAGTCAGTCCTTGCAGG+TGG | 0.658177 | 1.3:+17430965 | MS.gene25174:CDS |
| AAAAGCTCACCCAAACTGTG+AGG | 0.659214 | 1.3:+17430936 | MS.gene25174:CDS |
| ATGGAGGAGATTTACGGCGA+CGG | 0.663204 | 1.3:+17426965 | MS.gene25174:CDS |
| AAGCTGAGATTAAAGCGTTG+AGG | 0.667550 | 1.3:+17427287 | MS.gene25174:CDS |
| AGAACTTCGTCGAGGAGACG+CGG | 0.670647 | 1.3:+17427037 | MS.gene25174:CDS |
| TAAGCCAAATGACTTCCCAC+CGG | 0.676407 | 1.3:+17431945 | MS.gene25174:CDS |
| AGTTTGAGGGGAAATTCTAG+CGG | 0.678639 | 1.3:+17431592 | MS.gene25174:CDS |
| TCTCGTCGCCAATCACTAGG+TGG | 0.679433 | 1.3:+17431661 | MS.gene25174:CDS |
| AGAAACCAAAGAGAGAGAGG+CGG | 0.681897 | 1.3:+17431894 | MS.gene25174:CDS |
| TTGGAGATCATCCACCATGG+AGG | 0.683506 | 1.3:-17430716 | None:intergenic |
| GAGGGAAGAAGTATGAACAA+TGG | 0.689751 | 1.3:+17431634 | MS.gene25174:CDS |
| ATTGCGGCTCAAAGTGCTGG+AGG | 0.694049 | 1.3:+17431567 | MS.gene25174:CDS |
| TACAAGAGAACAGAGCAAAG+CGG | 0.698034 | 1.3:+17432304 | MS.gene25174:CDS |
| GAGAAGGTAGAACTTCGTCG+AGG | 0.703512 | 1.3:+17427029 | MS.gene25174:CDS |
| AGAAGTAAAACGGTGCTGAG+GGG | 0.712185 | 1.3:+17431835 | MS.gene25174:CDS |
| TAGGGATGACCTGAGTTGAG+GGG | 0.734547 | 1.3:-17431740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACATAATAAACAAA+TGG | - | chr1.3:17427596-17427615 | None:intergenic | 10.0% |
| !! | AAAATATTAAAAGAAAAGAA+GGG | - | chr1.3:17428376-17428395 | None:intergenic | 10.0% |
| !! | TAAAATATTAAAAGAAAAGA+AGG | - | chr1.3:17428377-17428396 | None:intergenic | 10.0% |
| !!! | ATTAATTGTTTCTTTTTTTT+GGG | + | chr1.3:17432105-17432124 | MS.gene25174:intron | 10.0% |
| !!! | ATTATAACATTAATTTTACA+TGG | + | chr1.3:17431089-17431108 | MS.gene25174:intron | 10.0% |
| !!! | TATTAATTGTTTCTTTTTTT+TGG | + | chr1.3:17432104-17432123 | MS.gene25174:intron | 10.0% |
| !! | TAAATAGATTGAAATTTAAC+TGG | - | chr1.3:17433250-17433269 | None:intergenic | 15.0% |
| !!! | AGAAAAATTGATCAATTTTA+TGG | + | chr1.3:17433054-17433073 | MS.gene25174:intron | 15.0% |
| !!! | GTTTTTTTATAAACAAATGT+TGG | - | chr1.3:17433014-17433033 | None:intergenic | 15.0% |
| !! | AAAAAATATTTCCCCATAAT+AGG | + | chr1.3:17428811-17428830 | MS.gene25174:intron | 20.0% |
| !! | AATATAAACTCAAAAGAACA+AGG | - | chr1.3:17430497-17430516 | None:intergenic | 20.0% |
| !! | ACAATTTAAAGATGAAATCA+GGG | - | chr1.3:17433114-17433133 | None:intergenic | 20.0% |
| !! | ATAATTACTGAAGTTGAATT+AGG | - | chr1.3:17430247-17430266 | None:intergenic | 20.0% |
| !! | CAACACAACATTTAATATTT+GGG | - | chr1.3:17429292-17429311 | None:intergenic | 20.0% |
| !! | TAATTACTGAAGTTGAATTA+GGG | - | chr1.3:17430246-17430265 | None:intergenic | 20.0% |
| !! | TCAACACAACATTTAATATT+TGG | - | chr1.3:17429293-17429312 | None:intergenic | 20.0% |
| !! | TTATAATCAATAAAGCAACT+GGG | - | chr1.3:17431076-17431095 | None:intergenic | 20.0% |
| !! | TTGAGTCTTTCATTTATATT+TGG | + | chr1.3:17433359-17433378 | MS.gene25174:intron | 20.0% |
| !! | TTGTTACTATCTATGATATA+TGG | + | chr1.3:17427413-17427432 | MS.gene25174:intron | 20.0% |
| !!! | AAAAAATAAAAGTACATCCT+GGG | - | chr1.3:17432604-17432623 | None:intergenic | 20.0% |
| !!! | AATCGTGTTATTCTTATTAA+AGG | + | chr1.3:17428493-17428512 | MS.gene25174:intron | 20.0% |
| !!! | ACTAGTTCTGAAATTATTTA+AGG | + | chr1.3:17431506-17431525 | MS.gene25174:intron | 20.0% |
| !!! | ATATTTTTAATTAGTGCTCT+TGG | + | chr1.3:17428329-17428348 | MS.gene25174:intron | 20.0% |
| !!! | ATCGTGTTATTCTTATTAAA+GGG | + | chr1.3:17428494-17428513 | MS.gene25174:intron | 20.0% |
| !!! | TCTTTAAATTGTCTACATTT+TGG | + | chr1.3:17433122-17433141 | MS.gene25174:intron | 20.0% |
| !!! | TTCTCAATTGTTGTTATTTT+TGG | + | chr1.3:17427358-17427377 | MS.gene25174:intron | 20.0% |
| !!! | TTTTTTTTTGGGAGTTTATT+TGG | + | chr1.3:17427613-17427632 | MS.gene25174:intron | 20.0% |
| ! | AAAAACACTTAATAGAGAGT+TGG | + | chr1.3:17431139-17431158 | MS.gene25174:CDS | 25.0% |
| ! | AAAACACCTATCACATAATA+AGG | + | chr1.3:17433029-17433048 | MS.gene25174:intron | 25.0% |
| ! | AAAACACTTAATAGAGAGTT+GGG | + | chr1.3:17431140-17431159 | MS.gene25174:CDS | 25.0% |
| ! | AAAGGTCAATGTCAAATAAA+CGG | - | chr1.3:17430017-17430036 | None:intergenic | 25.0% |
| ! | AAATTGCACAAAAATGTGAA+AGG | - | chr1.3:17428065-17428084 | None:intergenic | 25.0% |
| ! | AAGTCTAATTAATGCTTCAT+AGG | - | chr1.3:17428433-17428452 | None:intergenic | 25.0% |
| ! | AATAACTACGTATTAAAGCA+AGG | - | chr1.3:17432432-17432451 | None:intergenic | 25.0% |
| ! | AATCTCAAGACTTGATTTAT+AGG | - | chr1.3:17428634-17428653 | None:intergenic | 25.0% |
| ! | AATTAATGCTTCATAGGATT+TGG | - | chr1.3:17428427-17428446 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAACTTATCT+TGG | + | chr1.3:17430120-17430139 | MS.gene25174:intron | 25.0% |
| ! | ACTCCTAATCCTAAATAAAT+AGG | + | chr1.3:17429808-17429827 | MS.gene25174:intron | 25.0% |
| ! | AGATAAGGATAGAGAATTAT+CGG | + | chr1.3:17427258-17427277 | MS.gene25174:intron | 25.0% |
| ! | ATCTCAAAATTAACCTCTAA+TGG | + | chr1.3:17431694-17431713 | MS.gene25174:CDS | 25.0% |
| ! | ATGTATAGAACATTGTCTAT+CGG | - | chr1.3:17432646-17432665 | None:intergenic | 25.0% |
| ! | CAATTATCAATAAGATGTCA+AGG | - | chr1.3:17432138-17432157 | None:intergenic | 25.0% |
| ! | CAGTAATTATTTGTGTTCTT+AGG | + | chr1.3:17430257-17430276 | MS.gene25174:intron | 25.0% |
| ! | CTATCATTGAATTTGATTCA+TGG | + | chr1.3:17429581-17429600 | MS.gene25174:intron | 25.0% |
| ! | CTCCTAATCCTAAATAAATA+GGG | + | chr1.3:17429809-17429828 | MS.gene25174:intron | 25.0% |
| ! | GAAACTGTCTCATATAAATT+TGG | + | chr1.3:17428114-17428133 | MS.gene25174:intron | 25.0% |
| ! | GAATCATTGAAGTGAAAATT+GGG | + | chr1.3:17429379-17429398 | MS.gene25174:intron | 25.0% |
| ! | GACAATTTAAAGATGAAATC+AGG | - | chr1.3:17433115-17433134 | None:intergenic | 25.0% |
| ! | GTTATAATCAATAAAGCAAC+TGG | - | chr1.3:17431077-17431096 | None:intergenic | 25.0% |
| ! | TAATCGCTAATTTACATGTT+GGG | + | chr1.3:17427824-17427843 | MS.gene25174:intron | 25.0% |
| ! | TAATTATTTGTGTTCTTAGG+TGG | + | chr1.3:17430260-17430279 | MS.gene25174:intron | 25.0% |
| ! | TATTGAACTGCATTCTTATA+GGG | + | chr1.3:17431378-17431397 | MS.gene25174:intron | 25.0% |
| ! | TCACTTAAAAGACAAACAAA+TGG | - | chr1.3:17427978-17427997 | None:intergenic | 25.0% |
| ! | TCTAATCTCTCCTAATTATT+TGG | - | chr1.3:17429551-17429570 | None:intergenic | 25.0% |
| ! | TGAATCATTGAAGTGAAAAT+TGG | + | chr1.3:17429378-17429397 | MS.gene25174:intron | 25.0% |
| ! | TGGTTTATTTCACATTCTTT+AGG | + | chr1.3:17431109-17431128 | MS.gene25174:intron | 25.0% |
| ! | TTATTGAACTGCATTCTTAT+AGG | + | chr1.3:17431377-17431396 | MS.gene25174:intron | 25.0% |
| ! | TTCAGGAAAAATATCAATTG+CGG | + | chr1.3:17431551-17431570 | MS.gene25174:intron | 25.0% |
| ! | TTCTATCCTTATTATGTGAT+AGG | - | chr1.3:17433038-17433057 | None:intergenic | 25.0% |
| ! | TTGCTTTAATACGTAGTTAT+TGG | + | chr1.3:17432431-17432450 | MS.gene25174:intron | 25.0% |
| !! | AAATGAAAAGCTTTGATATG+TGG | + | chr1.3:17429211-17429230 | MS.gene25174:intron | 25.0% |
| !! | AAATGTTGGTAAGTTGTTAA+TGG | - | chr1.3:17433000-17433019 | None:intergenic | 25.0% |
| !! | AGTAAATTTTTCTTCTAAGC+TGG | - | chr1.3:17429252-17429271 | None:intergenic | 25.0% |
| !! | CAAAAAATAAAAGTACATCC+TGG | - | chr1.3:17432605-17432624 | None:intergenic | 25.0% |
| !! | GGCATATTATTCATTTTACT+TGG | + | chr1.3:17432452-17432471 | MS.gene25174:intron | 25.0% |
| !! | TCTTTTAGCATATCAACTAT+CGG | - | chr1.3:17428246-17428265 | None:intergenic | 25.0% |
| !! | TGTAATCATGCAACTTTTAA+CGG | + | chr1.3:17430837-17430856 | MS.gene25174:intron | 25.0% |
| !! | TTCCCTATTTATTTAGGATT+AGG | - | chr1.3:17429814-17429833 | None:intergenic | 25.0% |
| !!! | AAAAGATGAGAGTTTTGTAT+TGG | + | chr1.3:17429420-17429439 | MS.gene25174:intron | 25.0% |
| !!! | AAAGATGAGAGTTTTGTATT+GGG | + | chr1.3:17429421-17429440 | MS.gene25174:intron | 25.0% |
| !!! | ATTTGGGTTGTATTATAGTT+TGG | - | chr1.3:17429276-17429295 | None:intergenic | 25.0% |
| !!! | ATTTGTTTGTCTTTTAAGTG+AGG | + | chr1.3:17427977-17427996 | MS.gene25174:intron | 25.0% |
| !!! | TAGTTTTTGAGAAGATAGTA+AGG | + | chr1.3:17429753-17429772 | MS.gene25174:intron | 25.0% |
| !!! | TCTATACATTTTTTTCAACC+TGG | + | chr1.3:17432657-17432676 | MS.gene25174:intron | 25.0% |
| !!! | TGTTTGTTTTTGTGTAGATA+AGG | + | chr1.3:17427243-17427262 | MS.gene25174:intron | 25.0% |
| !!! | TTCAACTGTTTTATTCTTAG+AGG | + | chr1.3:17428652-17428671 | MS.gene25174:intron | 25.0% |
| !!! | TTTGTTTGTCTTTTAAGTGA+GGG | + | chr1.3:17427978-17427997 | MS.gene25174:intron | 25.0% |
| !!! | TTTTTACTACAACTGGTTTT+AGG | + | chr1.3:17432475-17432494 | MS.gene25174:intron | 25.0% |
| AAAAAGTTTACGCATGATAG+AGG | - | chr1.3:17430042-17430061 | None:intergenic | 30.0% | |
| AAAAATGGAAAGTTAGGACA+TGG | + | chr1.3:17428970-17428989 | MS.gene25174:intron | 30.0% | |
| AAACTAAACACTAACCTCAA+TGG | - | chr1.3:17432085-17432104 | None:intergenic | 30.0% | |
| AAATGAAAGACTCAATTACG+AGG | - | chr1.3:17433354-17433373 | None:intergenic | 30.0% | |
| AAATTCTCATCTCAGTAATC+AGG | - | chr1.3:17433189-17433208 | None:intergenic | 30.0% | |
| AAGAGGTCATATAAAACACT+TGG | - | chr1.3:17431991-17432010 | None:intergenic | 30.0% | |
| AAGGAAACTAGCAAATTAGT+AGG | - | chr1.3:17429682-17429701 | None:intergenic | 30.0% | |
| AATGAAAGACTCAATTACGA+GGG | - | chr1.3:17433353-17433372 | None:intergenic | 30.0% | |
| AATTCAGCTGAAAAACTCTT+CGG | - | chr1.3:17427187-17427206 | None:intergenic | 30.0% | |
| ACTGAGAAACTTTCCTTATA+TGG | - | chr1.3:17428194-17428213 | None:intergenic | 30.0% | |
| AGGAAACTAGCAAATTAGTA+GGG | - | chr1.3:17429681-17429700 | None:intergenic | 30.0% | |
| AGGAATTGAGCTTGTAAATA+TGG | + | chr1.3:17427858-17427877 | MS.gene25174:intron | 30.0% | |
| AGGGAAAAAAATGGAAAGTT+AGG | + | chr1.3:17428964-17428983 | MS.gene25174:intron | 30.0% | |
| ATGCAGTTAGAGATTATCAA+CGG | + | chr1.3:17430999-17431018 | MS.gene25174:CDS | 30.0% | |
| ATTGAACTGCATTCTTATAG+GGG | + | chr1.3:17431379-17431398 | MS.gene25174:intron | 30.0% | |
| ATTTAGGTGAAGACAAAGAA+AGG | - | chr1.3:17431343-17431362 | None:intergenic | 30.0% | |
| CAATATTGAGCTAGATGATA+GGG | - | chr1.3:17431761-17431780 | None:intergenic | 30.0% | |
| CACAAAAAGTTATAAGCAGT+AGG | + | chr1.3:17432952-17432971 | MS.gene25174:intron | 30.0% | |
| CACAATTGAAAGTAATGATC+TGG | + | chr1.3:17431460-17431479 | MS.gene25174:intron | 30.0% | |
| CCTAAATAAATAGGGAAATC+AGG | + | chr1.3:17429817-17429836 | MS.gene25174:intron | 30.0% | |
| CCTGATTTCCCTATTTATTT+AGG | - | chr1.3:17429820-17429839 | None:intergenic | 30.0% | |
| GAACCAATACAAAAAGATGA+TGG | - | chr1.3:17428861-17428880 | None:intergenic | 30.0% | |
| GATAATGTCAAACGTAAAGT+TGG | - | chr1.3:17428458-17428477 | None:intergenic | 30.0% | |
| GATAATTGGAAAGGAAATTC+AGG | + | chr1.3:17431919-17431938 | MS.gene25174:CDS | 30.0% | |
| GGAAATCAGAAAAATGTAAG+GGG | - | chr1.3:17433329-17433348 | None:intergenic | 30.0% | |
| GGGAAATCAGAAAAATGTAA+GGG | - | chr1.3:17433330-17433349 | None:intergenic | 30.0% | |
| GTAATCGCTAATTTACATGT+TGG | + | chr1.3:17427823-17427842 | MS.gene25174:intron | 30.0% | |
| GTCTCTATCATATGTATAGT+GGG | - | chr1.3:17429144-17429163 | None:intergenic | 30.0% | |
| GTCTTATATCCCTATACATA+GGG | - | chr1.3:17429790-17429809 | None:intergenic | 30.0% | |
| TAAACTAGAAGATACAAGCA+AGG | + | chr1.3:17429175-17429194 | MS.gene25174:intron | 30.0% | |
| TAACTTATGTCTGTAAGACT+TGG | + | chr1.3:17427659-17427678 | MS.gene25174:intron | 30.0% | |
| TCAATATTGAGCTAGATGAT+AGG | - | chr1.3:17431762-17431781 | None:intergenic | 30.0% | |
| TCAGGAAGAAAACAAAATCT+TGG | + | chr1.3:17430880-17430899 | MS.gene25174:intron | 30.0% | |
| TCTCATTTACTCAAAGACTA+AGG | - | chr1.3:17429701-17429720 | None:intergenic | 30.0% | |
| TGAGTTTATATTGCAATACC+TGG | + | chr1.3:17430505-17430524 | MS.gene25174:intron | 30.0% | |
| TGATGGGAAGCTAAAATTAA+CGG | + | chr1.3:17430187-17430206 | MS.gene25174:CDS | 30.0% | |
| TGTATAGAACATTGTCTATC+GGG | - | chr1.3:17432645-17432664 | None:intergenic | 30.0% | |
| TGTCTCTATCATATGTATAG+TGG | - | chr1.3:17429145-17429164 | None:intergenic | 30.0% | |
| TTGATATTATGTCAGTGTCT+TGG | - | chr1.3:17429937-17429956 | None:intergenic | 30.0% | |
| TTGTAGTTTAGCAATCTGTA+GGG | - | chr1.3:17430605-17430624 | None:intergenic | 30.0% | |
| ! | ACAATTTTCACCTCAAAACT+AGG | - | chr1.3:17429083-17429102 | None:intergenic | 30.0% |
| ! | ACATCTAAATCTTTTGATGG+TGG | + | chr1.3:17431796-17431815 | MS.gene25174:CDS | 30.0% |
| ! | AGTCTTATATCCCTATACAT+AGG | - | chr1.3:17429791-17429810 | None:intergenic | 30.0% |
| ! | GAAAATTTAAAGAGAGCGTA+TGG | + | chr1.3:17429028-17429047 | MS.gene25174:intron | 30.0% |
| ! | GGAACATCTAAATCTTTTGA+TGG | + | chr1.3:17431793-17431812 | MS.gene25174:CDS | 30.0% |
| ! | GGCATATGACTAATGATTTT+TGG | + | chr1.3:17430558-17430577 | MS.gene25174:intron | 30.0% |
| ! | TATCATCTAGCTCAATATTG+AGG | + | chr1.3:17431761-17431780 | MS.gene25174:CDS | 30.0% |
| ! | TGGCATCATCTTTATCTTTT+AGG | - | chr1.3:17432065-17432084 | None:intergenic | 30.0% |
| ! | TTTTGGCATTAGCAAATACT+TGG | + | chr1.3:17433139-17433158 | MS.gene25174:intron | 30.0% |
| !! | ACTATTATTTTGTTTCCTGG+TGG | + | chr1.3:17427882-17427901 | MS.gene25174:intron | 30.0% |
| !! | CTATTATTTTGTTTCCTGGT+GGG | + | chr1.3:17427883-17427902 | MS.gene25174:intron | 30.0% |
| !! | CTTTCAAGGGTATTTCATAA+TGG | + | chr1.3:17432552-17432571 | MS.gene25174:intron | 30.0% |
| !! | GGTACTATTATTTTGTTTCC+TGG | + | chr1.3:17427879-17427898 | MS.gene25174:intron | 30.0% |
| !! | TACTTGGTTTTTACTACAAC+TGG | + | chr1.3:17432468-17432487 | MS.gene25174:intron | 30.0% |
| !! | TCAGCTCTTGATTTTTGTTT+TGG | - | chr1.3:17430738-17430757 | None:intergenic | 30.0% |
| !! | TGATGAAAAGAAAGCATCAA+TGG | + | chr1.3:17430340-17430359 | MS.gene25174:CDS | 30.0% |
| !! | TGTTGACTTCTTGATACTAT+CGG | + | chr1.3:17428582-17428601 | MS.gene25174:intron | 30.0% |
| !! | TTGAGATGAGAGTATTATGA+TGG | + | chr1.3:17429350-17429369 | MS.gene25174:intron | 30.0% |
| !! | TTTACTACTGCTACTTTCAA+GGG | + | chr1.3:17432539-17432558 | MS.gene25174:intron | 30.0% |
| !!! | AATGGTTATGTCGATTTTCA+GGG | - | chr1.3:17432982-17433001 | None:intergenic | 30.0% |
| !!! | AATTTCAGAACTAGTTTTCG+AGG | - | chr1.3:17431501-17431520 | None:intergenic | 30.0% |
| !!! | CATCTTTTTGTATTGGTTCT+CGG | + | chr1.3:17428862-17428881 | MS.gene25174:intron | 30.0% |
| !!! | TAATGGTTATGTCGATTTTC+AGG | - | chr1.3:17432983-17433002 | None:intergenic | 30.0% |
| AAAAACTCACACACACACAA+AGG | - | chr1.3:17427766-17427785 | None:intergenic | 35.0% | |
| AAAACTCACACACACACAAA+GGG | - | chr1.3:17427765-17427784 | None:intergenic | 35.0% | |
| AAACCCTAACCCTATGTATA+GGG | + | chr1.3:17429778-17429797 | MS.gene25174:intron | 35.0% | |
| AAAGCGGTTCAGCAATATAA+AGG | + | chr1.3:17432320-17432339 | MS.gene25174:CDS | 35.0% | |
| AACTGCATAACACACAAACT+TGG | - | chr1.3:17432724-17432743 | None:intergenic | 35.0% | |
| AAGCCACAGACCAAATAATT+AGG | + | chr1.3:17429538-17429557 | MS.gene25174:intron | 35.0% | |
| AAGCGGTTCAGCAATATAAA+GGG | + | chr1.3:17432321-17432340 | MS.gene25174:CDS | 35.0% | |
| AATGAGTGCAAGCAGTATTT+AGG | - | chr1.3:17431359-17431378 | None:intergenic | 35.0% | |
| ACTTCAATCACCACAAAATG+AGG | - | chr1.3:17432684-17432703 | None:intergenic | 35.0% | |
| AGATAAAGATGATGCCATTG+AGG | + | chr1.3:17432068-17432087 | MS.gene25174:CDS | 35.0% | |
| AGGGAGGATAAAGGAATAAA+AGG | - | chr1.3:17428521-17428540 | None:intergenic | 35.0% | |
| ATATCCCTATACATAGGGTT+AGG | - | chr1.3:17429785-17429804 | None:intergenic | 35.0% | |
| ATGAAAGACTCAATTACGAG+GGG | - | chr1.3:17433352-17433371 | None:intergenic | 35.0% | |
| CATTAGTCATATGCCAGATT+CGG | - | chr1.3:17430553-17430572 | None:intergenic | 35.0% | |
| CTTGTAGTTTAGCAATCTGT+AGG | - | chr1.3:17430606-17430625 | None:intergenic | 35.0% | |
| GACACTGGAAAGAAGTAAAA+CGG | + | chr1.3:17431825-17431844 | MS.gene25174:CDS | 35.0% | |
| GCAACTTCAAAGTTCAAACA+TGG | - | chr1.3:17427930-17427949 | None:intergenic | 35.0% | |
| GCTAATTGTTCCTATCTAAG+AGG | + | chr1.3:17428888-17428907 | MS.gene25174:intron | 35.0% | |
| GGGGAAATCAGAAAAATGTA+AGG | - | chr1.3:17433331-17433350 | None:intergenic | 35.0% | |
| GTTGTGCTTGTATAGAGAAA+AGG | + | chr1.3:17428754-17428773 | MS.gene25174:intron | 35.0% | |
| GTTTCATCATCACTTCTTTC+AGG | + | chr1.3:17430862-17430881 | MS.gene25174:intron | 35.0% | |
| TAAACCCTAACCCTATGTAT+AGG | + | chr1.3:17429777-17429796 | MS.gene25174:intron | 35.0% | |
| TATCCCTATACATAGGGTTA+GGG | - | chr1.3:17429784-17429803 | None:intergenic | 35.0% | |
| TATTGGGTCTTACTTGGTTT+GGG | + | chr1.3:17429437-17429456 | MS.gene25174:intron | 35.0% | |
| TCTCCTAATTATTTGGTCTG+TGG | - | chr1.3:17429544-17429563 | None:intergenic | 35.0% | |
| TCTCTAAACGATCCAGAAAA+TGG | - | chr1.3:17427013-17427032 | None:intergenic | 35.0% | |
| TGAAGTTGCAGCTGAAAAAT+GGG | + | chr1.3:17427941-17427960 | MS.gene25174:intron | 35.0% | |
| TGATTCATGGCAAGACATTA+TGG | + | chr1.3:17429594-17429613 | MS.gene25174:intron | 35.0% | |
| TGGTTGAATGAGTAACTTTG+AGG | - | chr1.3:17431865-17431884 | None:intergenic | 35.0% | |
| TTATCTGTCAGATGTTAGCA+AGG | + | chr1.3:17432178-17432197 | MS.gene25174:intron | 35.0% | |
| TTCAATGTAATCCCATGTGT+CGG | + | chr1.3:17427493-17427512 | MS.gene25174:intron | 35.0% | |
| TTGAACTGCATTCTTATAGG+GGG | + | chr1.3:17431380-17431399 | MS.gene25174:intron | 35.0% | |
| TTGAAGTTGCAGCTGAAAAA+TGG | + | chr1.3:17427940-17427959 | MS.gene25174:intron | 35.0% | |
| TTTACCTTCCAGAAATTAGC+TGG | - | chr1.3:17432368-17432387 | None:intergenic | 35.0% | |
| TTTATTCCTTTATCCTCCCT+TGG | + | chr1.3:17428521-17428540 | MS.gene25174:intron | 35.0% | |
| ! | AAATAAAAGTACATCCTGGG+CGG | - | chr1.3:17432601-17432620 | None:intergenic | 35.0% |
| ! | AATCATGCAACTTTTAACGG+AGG | + | chr1.3:17430840-17430859 | MS.gene25174:intron | 35.0% |
| ! | AATGCTTCATAGGATTTGGT+TGG | - | chr1.3:17428423-17428442 | None:intergenic | 35.0% |
| ! | CTTTGGTTTCTTCGAAAGAT+TGG | - | chr1.3:17431885-17431904 | None:intergenic | 35.0% |
| ! | GAGCCATCATCTTTTTGTAT+TGG | + | chr1.3:17428855-17428874 | MS.gene25174:intron | 35.0% |
| ! | GTATCGATGCAAATGTCAAA+AGG | - | chr1.3:17428030-17428049 | None:intergenic | 35.0% |
| ! | GTTTTGTATTGGGTCTTACT+TGG | + | chr1.3:17429431-17429450 | MS.gene25174:intron | 35.0% |
| ! | TGACACAATGAATGCTTTTG+TGG | + | chr1.3:17428914-17428933 | MS.gene25174:intron | 35.0% |
| ! | TGATATAGTCTTAGAGTGCA+CGG | + | chr1.3:17428938-17428957 | MS.gene25174:intron | 35.0% |
| ! | TTGCATTCACTCTTAGTTCT+AGG | + | chr1.3:17428555-17428574 | MS.gene25174:intron | 35.0% |
| ! | TTGTGTGTGTGTGAGTTTTT+AGG | + | chr1.3:17427766-17427785 | MS.gene25174:intron | 35.0% |
| ! | TTTTCTGGATCGTTTAGAGA+AGG | + | chr1.3:17427013-17427032 | MS.gene25174:CDS | 35.0% |
| !! | AAAGGTACTTAAGAGACATG+TGG | - | chr1.3:17429119-17429138 | None:intergenic | 35.0% |
| !! | AATGCTGAGATTTGTTAGGT+TGG | + | chr1.3:17427701-17427720 | MS.gene25174:intron | 35.0% |
| !! | AGTTTTCGAGGTTAACAGAT+AGG | - | chr1.3:17431489-17431508 | None:intergenic | 35.0% |
| !! | CTTTACTACTGCTACTTTCA+AGG | + | chr1.3:17432538-17432557 | MS.gene25174:intron | 35.0% |
| !! | GAGTTCATGAATTTGTTGCA+CGG | + | chr1.3:17427091-17427110 | MS.gene25174:CDS | 35.0% |
| !! | GATTCAGTCCCACTTTTAAT+AGG | + | chr1.3:17432574-17432593 | MS.gene25174:intron | 35.0% |
| !! | GTTTTCGAGGTTAACAGATA+GGG | - | chr1.3:17431488-17431507 | None:intergenic | 35.0% |
| !! | TCAATATTGAGGAGTGCTAA+AGG | + | chr1.3:17431772-17431791 | MS.gene25174:CDS | 35.0% |
| !! | TCATATGTATAGTGGGCAAA+AGG | - | chr1.3:17429137-17429156 | None:intergenic | 35.0% |
| !! | TGTGTTGACTTGACCATATA+AGG | + | chr1.3:17428178-17428197 | MS.gene25174:intron | 35.0% |
| !! | TTTGTCTTTTAAGTGAGGGA+GGG | + | chr1.3:17427982-17428001 | MS.gene25174:intron | 35.0% |
| !!! | ACTACAACTGGTTTTAGGTT+GGG | + | chr1.3:17432480-17432499 | MS.gene25174:intron | 35.0% |
| !!! | ACTCACAAATCCTAGTTTTG+AGG | + | chr1.3:17429070-17429089 | MS.gene25174:intron | 35.0% |
| !!! | GTTAGGTTGGATATTTTTCG+TGG | + | chr1.3:17427714-17427733 | MS.gene25174:intron | 35.0% |
| !!! | TACTACAACTGGTTTTAGGT+TGG | + | chr1.3:17432479-17432498 | MS.gene25174:intron | 35.0% |
| AAACTCACACACACACAAAG+GGG | - | chr1.3:17427764-17427783 | None:intergenic | 40.0% | |
| AAAGACTGTTCAGTTTGCCT+TGG | + | chr1.3:17430687-17430706 | MS.gene25174:CDS | 40.0% | |
| AAAGTTAGGACATGGAGATG+AGG | + | chr1.3:17428978-17428997 | MS.gene25174:intron | 40.0% | |
| AAATTGTGCGCAAATCCACT+TGG | + | chr1.3:17432756-17432775 | MS.gene25174:intron | 40.0% | |
| AACATTGTCTATCGGGTAGT+CGG | - | chr1.3:17432638-17432657 | None:intergenic | 40.0% | |
| AAGTCATGCCTGTCAAACAA+TGG | + | chr1.3:17431231-17431250 | MS.gene25174:CDS | 40.0% | |
| ACCAATAATATGATCCCACC+AGG | - | chr1.3:17427900-17427919 | None:intergenic | 40.0% | |
| ACGACACTCACATGTAAACA+CGG | + | chr1.3:17427445-17427464 | MS.gene25174:intron | 40.0% | |
| ACTACTAGCGTAAGAACAGA+AGG | + | chr1.3:17428779-17428798 | MS.gene25174:intron | 40.0% | |
| AGTTTGAGGGGAAATTCTAG+CGG | + | chr1.3:17431592-17431611 | MS.gene25174:CDS | 40.0% | |
| ATACTATCCTCTGTATCTGC+CGG | - | chr1.3:17431967-17431986 | None:intergenic | 40.0% | |
| ATATGACCTCTTGCAGAAAG+AGG | + | chr1.3:17431999-17432018 | MS.gene25174:CDS | 40.0% | |
| ATGCAATGCCATGTAAACCA+AGG | - | chr1.3:17428541-17428560 | None:intergenic | 40.0% | |
| CAGAATGCATAGACAAAAGG+TGG | + | chr1.3:17430904-17430923 | MS.gene25174:CDS | 40.0% | |
| CAGTGAAAGTGGAGCTTAAT+CGG | + | chr1.3:17427122-17427141 | MS.gene25174:CDS | 40.0% | |
| CTGTTGTGGTTGCAAATGAA+TGG | + | chr1.3:17431192-17431211 | MS.gene25174:CDS | 40.0% | |
| CTTAGGCAAGAATCCATTAG+AGG | - | chr1.3:17431710-17431729 | None:intergenic | 40.0% | |
| GAAACAGATTGAGATTTGCC+AGG | + | chr1.3:17430759-17430778 | MS.gene25174:CDS | 40.0% | |
| GAAGAGCTAGCAAGAGATTA+AGG | + | chr1.3:17429318-17429337 | MS.gene25174:intron | 40.0% | |
| GAAGTTGCAGCTGAAAAATG+GGG | + | chr1.3:17427942-17427961 | MS.gene25174:intron | 40.0% | |
| GACAGAAATGTGACACAAAG+AGG | + | chr1.3:17433381-17433400 | MS.gene25174:intron | 40.0% | |
| GAGAGAAAAAGCTGTTGAAG+AGG | + | chr1.3:17427324-17427343 | MS.gene25174:CDS | 40.0% | |
| GCATATCAACTATCGGACAA+TGG | - | chr1.3:17428239-17428258 | None:intergenic | 40.0% | |
| GGACAGAATGCATAGACAAA+AGG | + | chr1.3:17430901-17430920 | MS.gene25174:CDS | 40.0% | |
| GTATTGGGTCTTACTTGGTT+TGG | + | chr1.3:17429436-17429455 | MS.gene25174:intron | 40.0% | |
| GTGGGATCATATTATTGGTG+TGG | + | chr1.3:17427901-17427920 | MS.gene25174:intron | 40.0% | |
| TACAAGAGAACAGAGCAAAG+CGG | + | chr1.3:17432304-17432323 | MS.gene25174:CDS | 40.0% | |
| TAGGGCTCAAAGCAATACTT+TGG | - | chr1.3:17430228-17430247 | None:intergenic | 40.0% | |
| TAGTGCAGCTTCTTTGGATT+TGG | - | chr1.3:17430656-17430675 | None:intergenic | 40.0% | |
| TATCAACTCCACCTAGTGAT+TGG | - | chr1.3:17431672-17431691 | None:intergenic | 40.0% | |
| TCCTGGTGGGATCATATTAT+TGG | + | chr1.3:17427896-17427915 | MS.gene25174:intron | 40.0% | |
| TCTTCAAGCCATTGTTTGAC+AGG | - | chr1.3:17431242-17431261 | None:intergenic | 40.0% | |
| TGAAAGACTCAATTACGAGG+GGG | - | chr1.3:17433351-17433370 | None:intergenic | 40.0% | |
| TGAGGCAAAGAAGATGAGAA+GGG | + | chr1.3:17432233-17432252 | MS.gene25174:CDS | 40.0% | |
| TGCAATGCCATGTAAACCAA+GGG | - | chr1.3:17428540-17428559 | None:intergenic | 40.0% | |
| TGCCTACTTGGAACTGATAT+GGG | - | chr1.3:17432805-17432824 | None:intergenic | 40.0% | |
| TGTAAACCAAGGGAGGATAA+AGG | - | chr1.3:17428530-17428549 | None:intergenic | 40.0% | |
| TTACGCATGATAGAGGCAAA+AGG | - | chr1.3:17430035-17430054 | None:intergenic | 40.0% | |
| TTATCCTCCCTTGGTTTACA+TGG | + | chr1.3:17428530-17428549 | MS.gene25174:intron | 40.0% | |
| TTCAAGTAGTGCAGCTTCTT+TGG | - | chr1.3:17430662-17430681 | None:intergenic | 40.0% | |
| TTGAGGCAAAGAAGATGAGA+AGG | + | chr1.3:17432232-17432251 | MS.gene25174:CDS | 40.0% | |
| TTGCCTACTTGGAACTGATA+TGG | - | chr1.3:17432806-17432825 | None:intergenic | 40.0% | |
| ! | AAAGAAGTAAAACGGTGCTG+AGG | + | chr1.3:17431833-17431852 | MS.gene25174:CDS | 40.0% |
| ! | AAGAAGTAAAACGGTGCTGA+GGG | + | chr1.3:17431834-17431853 | MS.gene25174:CDS | 40.0% |
| ! | AAGAGCTGTCAAAGGTTGAT+GGG | + | chr1.3:17430171-17430190 | MS.gene25174:CDS | 40.0% |
| ! | AATAAAAGTACATCCTGGGC+GGG | - | chr1.3:17432600-17432619 | None:intergenic | 40.0% |
| ! | AGAACCAGCTAATTTCTGGA+AGG | + | chr1.3:17432361-17432380 | MS.gene25174:CDS | 40.0% |
| ! | CTTGGTTGACTTAGTTCAAC+TGG | + | chr1.3:17427677-17427696 | MS.gene25174:intron | 40.0% |
| ! | GAGGGAAGAAGTATGAACAA+TGG | + | chr1.3:17431634-17431653 | MS.gene25174:CDS | 40.0% |
| ! | TGGCAATGCTGAGATTTGTT+AGG | + | chr1.3:17427697-17427716 | MS.gene25174:intron | 40.0% |
| ! | TGTGTCATTGCCTCTTAGAT+AGG | - | chr1.3:17428901-17428920 | None:intergenic | 40.0% |
| ! | TTACATGTGAGTGTCGTGTA+TGG | - | chr1.3:17427442-17427461 | None:intergenic | 40.0% |
| !! | AAGCTGAGATTAAAGCGTTG+AGG | + | chr1.3:17427287-17427306 | MS.gene25174:CDS | 40.0% |
| !! | CATGAATTTGTTGCACGGTT+CGG | + | chr1.3:17427096-17427115 | MS.gene25174:CDS | 40.0% |
| !! | GTTTGTCTTTTAAGTGAGGG+AGG | + | chr1.3:17427981-17428000 | MS.gene25174:intron | 40.0% |
| !! | TGTGTGTGTGAGTTTTTAGG+TGG | + | chr1.3:17427769-17427788 | MS.gene25174:intron | 40.0% |
| !! | TTGTCTTTTAAGTGAGGGAG+GGG | + | chr1.3:17427983-17428002 | MS.gene25174:intron | 40.0% |
| !!! | AATCTTTTGATGGTGGCTCA+AGG | + | chr1.3:17431803-17431822 | MS.gene25174:CDS | 40.0% |
| !!! | CTACAACTGGTTTTAGGTTG+GGG | + | chr1.3:17432481-17432500 | MS.gene25174:intron | 40.0% |
| AAAAGCTCACCCAAACTGTG+AGG | + | chr1.3:17430936-17430955 | MS.gene25174:CDS | 45.0% | |
| AAAGCTCACCCAAACTGTGA+GGG | + | chr1.3:17430937-17430956 | MS.gene25174:CDS | 45.0% | |
| AACGATCCAGAAAATGGTGC+CGG | - | chr1.3:17427007-17427026 | None:intergenic | 45.0% | |
| AAGGAGGGTAGATCATATGG+AGG | + | chr1.3:17429492-17429511 | MS.gene25174:intron | 45.0% | |
| AATGCCATGTAAACCAAGGG+AGG | - | chr1.3:17428537-17428556 | None:intergenic | 45.0% | |
| ACCAACACAATACCGACACA+TGG | - | chr1.3:17427508-17427527 | None:intergenic | 45.0% | |
| ACCTGGCGAGAAAGAATTGA+TGG | + | chr1.3:17430522-17430541 | MS.gene25174:intron | 45.0% | |
| ACTAACCATGCAAGACCAAG+TGG | - | chr1.3:17432774-17432793 | None:intergenic | 45.0% | |
| ACTAGCGTAAGAACAGAAGG+TGG | + | chr1.3:17428782-17428801 | MS.gene25174:intron | 45.0% | |
| AGAAACCAAAGAGAGAGAGG+CGG | + | chr1.3:17431894-17431913 | MS.gene25174:CDS | 45.0% | |
| AGAGAGAGGCGGATGATAAT+TGG | + | chr1.3:17431905-17431924 | MS.gene25174:CDS | 45.0% | |
| AGATACGTTGACCAAAGCCA+TGG | + | chr1.3:17432206-17432225 | MS.gene25174:CDS | 45.0% | |
| AGCAAGGAGGGTAGATCATA+TGG | + | chr1.3:17429489-17429508 | MS.gene25174:intron | 45.0% | |
| AGCAATTCTTGCTCCTTTGG+AGG | + | chr1.3:17430439-17430458 | MS.gene25174:CDS | 45.0% | |
| AGGACATGGAGATGAGGTTT+GGG | + | chr1.3:17428984-17429003 | MS.gene25174:intron | 45.0% | |
| AGTAGCTTCCATGGAAAAGG+AGG | + | chr1.3:17432257-17432276 | MS.gene25174:CDS | 45.0% | |
| ATCACCACAAAATGAGGTCC+AGG | - | chr1.3:17432678-17432697 | None:intergenic | 45.0% | |
| ATCCATACTCTGCTGTCTAG+CGG | - | chr1.3:17427065-17427084 | None:intergenic | 45.0% | |
| CACAAACTTGGTTGCCTACT+TGG | - | chr1.3:17432817-17432836 | None:intergenic | 45.0% | |
| CCAACACAATACCGACACAT+GGG | - | chr1.3:17427507-17427526 | None:intergenic | 45.0% | |
| CGAAGAAACCAAAGAGAGAG+AGG | + | chr1.3:17431891-17431910 | MS.gene25174:CDS | 45.0% | |
| CGAAGCAATTCTTGCTCCTT+TGG | + | chr1.3:17430436-17430455 | MS.gene25174:CDS | 45.0% | |
| CGATTAAGCTCCACTTTCAC+TGG | - | chr1.3:17427124-17427143 | None:intergenic | 45.0% | |
| CTGCCTACTTGGAACTGATA+TGG | - | chr1.3:17432911-17432930 | None:intergenic | 45.0% | |
| CTGTCAGATGTTAGCAAGGA+AGG | + | chr1.3:17432182-17432201 | MS.gene25174:intron | 45.0% | |
| CTGTGCTGCAAGCCTATTAT+GGG | - | chr1.3:17428826-17428845 | None:intergenic | 45.0% | |
| CTTCTTTGCCTCAACTTCCA+TGG | - | chr1.3:17432226-17432245 | None:intergenic | 45.0% | |
| GAAAGACTCAATTACGAGGG+GGG | - | chr1.3:17433350-17433369 | None:intergenic | 45.0% | |
| GAAGAGCTGTCAAAGGTTGA+TGG | + | chr1.3:17430170-17430189 | MS.gene25174:CDS | 45.0% | |
| GAGGCGGATGATAATTGGAA+AGG | + | chr1.3:17431910-17431929 | MS.gene25174:CDS | 45.0% | |
| GCAAATACTTGGCAGCATGT+TGG | + | chr1.3:17433150-17433169 | MS.gene25174:intron | 45.0% | |
| GCACGGAGAAGGGAAAAAAA+TGG | + | chr1.3:17428955-17428974 | MS.gene25174:intron | 45.0% | |
| GCCTACTTGGAACTGATATG+GGG | - | chr1.3:17432804-17432823 | None:intergenic | 45.0% | |
| GCTCAGAACCAGCTAATTTC+TGG | + | chr1.3:17432357-17432376 | MS.gene25174:CDS | 45.0% | |
| GGAAGTAGCTTCCATGGAAA+AGG | + | chr1.3:17432254-17432273 | MS.gene25174:CDS | 45.0% | |
| GGAGCAAGAATTGCTTCGAT+CGG | - | chr1.3:17430434-17430453 | None:intergenic | 45.0% | |
| GGCGAGAAAGAATTGATGGA+GGG | + | chr1.3:17430526-17430545 | MS.gene25174:intron | 45.0% | |
| GTTCATACTTCTTCCCTCTG+CGG | - | chr1.3:17431632-17431651 | None:intergenic | 45.0% | |
| TAAGCCAAATGACTTCCCAC+CGG | + | chr1.3:17431945-17431964 | MS.gene25174:CDS | 45.0% | |
| TAGGACATGGAGATGAGGTT+TGG | + | chr1.3:17428983-17429002 | MS.gene25174:intron | 45.0% | |
| TCCATCAATTCTTTCTCGCC+AGG | - | chr1.3:17430526-17430545 | None:intergenic | 45.0% | |
| TCCCCATATCAGTTCCAAGT+AGG | + | chr1.3:17432800-17432819 | MS.gene25174:intron | 45.0% | |
| TGCCAAGGTAACAGCAAACA+GGG | + | chr1.3:17431166-17431185 | MS.gene25174:CDS | 45.0% | |
| TGGCGAGAAAGAATTGATGG+AGG | + | chr1.3:17430525-17430544 | MS.gene25174:intron | 45.0% | |
| TGGTTACCCAAGTTCGAACT+GGG | + | chr1.3:17427734-17427753 | MS.gene25174:intron | 45.0% | |
| TGTGCTGCAAGCCTATTATG+GGG | - | chr1.3:17428825-17428844 | None:intergenic | 45.0% | |
| TTCATGACCAGCTTTCCTCA+AGG | - | chr1.3:17432031-17432050 | None:intergenic | 45.0% | |
| TTCCAAGTAGGCAGCTCATT+TGG | + | chr1.3:17432917-17432936 | MS.gene25174:intron | 45.0% | |
| TTGCAGCAGAAGCTACTCTT+CGG | + | chr1.3:17430372-17430391 | MS.gene25174:CDS | 45.0% | |
| ! | AGAAGTAAAACGGTGCTGAG+GGG | + | chr1.3:17431835-17431854 | MS.gene25174:CDS | 45.0% |
| ! | AGCTTTAGTTCAGCCTCCAA+AGG | - | chr1.3:17430455-17430474 | None:intergenic | 45.0% |
| ! | AGGCTGAACTAAAGCTTGCT+CGG | + | chr1.3:17430459-17430478 | MS.gene25174:CDS | 45.0% |
| ! | ATAGGGATGACCTGAGTTGA+GGG | - | chr1.3:17431744-17431763 | None:intergenic | 45.0% |
| ! | TCAACCTGGACCTCATTTTG+TGG | + | chr1.3:17432671-17432690 | MS.gene25174:intron | 45.0% |
| ! | TTTGCCAGGTATCGCAATCT+TGG | + | chr1.3:17430773-17430792 | MS.gene25174:intron | 45.0% |
| !! | AAGCGTTGAGGCATTCTGAA+CGG | + | chr1.3:17427299-17427318 | MS.gene25174:CDS | 45.0% |
| !! | CAAATCCACTTGGTCTTGCA+TGG | + | chr1.3:17432766-17432785 | MS.gene25174:intron | 45.0% |
| !! | CGTAAAAGCACTAGCAAGGA+GGG | + | chr1.3:17429477-17429496 | MS.gene25174:intron | 45.0% |
| !! | GACTCGTAAAAGCACTAGCA+AGG | + | chr1.3:17429473-17429492 | MS.gene25174:intron | 45.0% |
| !! | GGTTCTGAGCACTGTTTACA+GGG | - | chr1.3:17432347-17432366 | None:intergenic | 45.0% |
| !! | GTGTTGGTGTCAAACACTGT+TGG | + | chr1.3:17427520-17427539 | MS.gene25174:intron | 45.0% |
| !! | TACCCTGTTTGCTGTTACCT+TGG | - | chr1.3:17431171-17431190 | None:intergenic | 45.0% |
| !! | TCGTAAAAGCACTAGCAAGG+AGG | + | chr1.3:17429476-17429495 | MS.gene25174:intron | 45.0% |
| !! | TGGTTCTGAGCACTGTTTAC+AGG | - | chr1.3:17432348-17432367 | None:intergenic | 45.0% |
| !! | TGTTTGCTGTTACCTTGGCA+CGG | - | chr1.3:17431166-17431185 | None:intergenic | 45.0% |
| !! | TTCTAGCTCCCTCACAGTTT+GGG | - | chr1.3:17430948-17430967 | None:intergenic | 45.0% |
| !!! | CATGTTGGGCTTGTTTTGTG+AGG | + | chr1.3:17427838-17427857 | MS.gene25174:intron | 45.0% |
| !!! | GTTTTGGAGATCATCCACCA+TGG | - | chr1.3:17430722-17430741 | None:intergenic | 45.0% |
| !! | TTTATATCAAAAAATAAATA+AGG | - | chr1.3:17431315-17431334 | None:intergenic | 5.0% |
| !!! | AATTTTACTTAATTTTTTTT+TGG | + | chr1.3:17427203-17427222 | MS.gene25174:intron | 5.0% |
| !!! | TATTATGTTTTTTTTTTTTT+GGG | + | chr1.3:17427602-17427621 | MS.gene25174:intron | 5.0% |
| !!! | TTATTATGTTTTTTTTTTTT+TGG | + | chr1.3:17427601-17427620 | MS.gene25174:intron | 5.0% |
| !!! | TTTTTTATTTTTATTTTTTC+AGG | + | chr1.3:17431534-17431553 | MS.gene25174:intron | 5.0% |
| AGAAAGAGGTCGTTGCCTTG+AGG | + | chr1.3:17432013-17432032 | MS.gene25174:CDS | 50.0% | |
| AGCAAACAGGGTAGCTGTTG+TGG | + | chr1.3:17431178-17431197 | MS.gene25174:CDS | 50.0% | |
| AGCAGAAGCTACTCTTCGGA+GGG | + | chr1.3:17430376-17430395 | MS.gene25174:CDS | 50.0% | |
| AGCGTAAGAACAGAAGGTGG+TGG | + | chr1.3:17428785-17428804 | MS.gene25174:intron | 50.0% | |
| AGTCTTAGAGTGCACGGAGA+AGG | + | chr1.3:17428944-17428963 | MS.gene25174:intron | 50.0% | |
| ATCATCCGCCTCTCTCTCTT+TGG | - | chr1.3:17431902-17431921 | None:intergenic | 50.0% | |
| ATGGAGGAGATTTACGGCGA+CGG | + | chr1.3:17426965-17426984 | MS.gene25174:CDS | 50.0% | |
| ATTGATGGAGGGACCGAATC+TGG | + | chr1.3:17430537-17430556 | MS.gene25174:intron | 50.0% | |
| CAACGACCTCTTTCTGCAAG+AGG | - | chr1.3:17432008-17432027 | None:intergenic | 50.0% | |
| CACCAAATGAGCTGCCTACT+TGG | - | chr1.3:17432922-17432941 | None:intergenic | 50.0% | |
| CATCATCCTTCTGAGCAGCA+TGG | - | chr1.3:17430403-17430422 | None:intergenic | 50.0% | |
| CCATAATAGGCTTGCAGCAC+AGG | + | chr1.3:17428824-17428843 | MS.gene25174:intron | 50.0% | |
| CCTGTGCTGCAAGCCTATTA+TGG | - | chr1.3:17428827-17428846 | None:intergenic | 50.0% | |
| CGGCTTGAGAATGAAGTTCG+AGG | + | chr1.3:17427142-17427161 | MS.gene25174:CDS | 50.0% | |
| CTAGAAGAGTCAGTCCTTGC+AGG | + | chr1.3:17430962-17430981 | MS.gene25174:CDS | 50.0% | |
| GACCAAAGCCATGGAAGTTG+AGG | + | chr1.3:17432215-17432234 | MS.gene25174:CDS | 50.0% | |
| GAGAAGGGAAGTAGCTTCCA+TGG | + | chr1.3:17432248-17432267 | MS.gene25174:CDS | 50.0% | |
| GAGAAGGTAGAACTTCGTCG+AGG | + | chr1.3:17427029-17427048 | MS.gene25174:CDS | 50.0% | |
| GATAGGGATGACCTGAGTTG+AGG | - | chr1.3:17431745-17431764 | None:intergenic | 50.0% | |
| GCAAGAATTGCTTCGATCGG+AGG | - | chr1.3:17430431-17430450 | None:intergenic | 50.0% | |
| GCATAGACAAAAGGTGGCAG+AGG | + | chr1.3:17430910-17430929 | MS.gene25174:CDS | 50.0% | |
| GCTGTCTGAAGAGCTGTCAA+AGG | + | chr1.3:17430163-17430182 | MS.gene25174:intron | 50.0% | |
| GGAGATCCCAGTTCGAACTT+GGG | - | chr1.3:17427743-17427762 | None:intergenic | 50.0% | |
| GGGAAGATGATTGACCTGAG+AGG | - | chr1.3:17433094-17433113 | None:intergenic | 50.0% | |
| GTCTTAGAGTGCACGGAGAA+GGG | + | chr1.3:17428945-17428964 | MS.gene25174:intron | 50.0% | |
| GTGCCAAGGTAACAGCAAAC+AGG | + | chr1.3:17431165-17431184 | MS.gene25174:CDS | 50.0% | |
| GTGGTTACCCAAGTTCGAAC+TGG | + | chr1.3:17427733-17427752 | MS.gene25174:intron | 50.0% | |
| TATCCTCTGTATCTGCCGGT+GGG | - | chr1.3:17431963-17431982 | None:intergenic | 50.0% | |
| TCAATTGCGGCTCAAAGTGC+TGG | + | chr1.3:17431564-17431583 | MS.gene25174:CDS | 50.0% | |
| TCGTCCAAGATTGCGATACC+TGG | - | chr1.3:17430780-17430799 | None:intergenic | 50.0% | |
| TCTTCTCGTCGCCAATCACT+AGG | + | chr1.3:17431658-17431677 | MS.gene25174:CDS | 50.0% | |
| TGAGGGGATGGTGTTCTCTT+AGG | - | chr1.3:17431727-17431746 | None:intergenic | 50.0% | |
| TGCCTCAACTTCCATGGCTT+TGG | - | chr1.3:17432220-17432239 | None:intergenic | 50.0% | |
| TGGAACTGATATGGGGAGTG+TGG | - | chr1.3:17432797-17432816 | None:intergenic | 50.0% | |
| TGGGCGGGCCTATTAAAAGT+GGG | - | chr1.3:17432585-17432604 | None:intergenic | 50.0% | |
| TGTTCAGTTTGCCTTGGCCA+AGG | + | chr1.3:17430693-17430712 | MS.gene25174:CDS | 50.0% | |
| TTCCGCTAGACAGCAGAGTA+TGG | + | chr1.3:17427060-17427079 | MS.gene25174:CDS | 50.0% | |
| TTGGAGATCATCCACCATGG+AGG | - | chr1.3:17430719-17430738 | None:intergenic | 50.0% | |
| TTGTAACGTCGAGTCCTCTC+AGG | + | chr1.3:17433077-17433096 | MS.gene25174:intron | 50.0% | |
| TTGTCTATCGGGTAGTCGGT+TGG | - | chr1.3:17432634-17432653 | None:intergenic | 50.0% | |
| ! | ACTAAAGCTTGCTCGGCAAG+AGG | + | chr1.3:17430466-17430485 | MS.gene25174:CDS | 50.0% |
| ! | AGCAGCTACCTCCTTTTCCA+TGG | - | chr1.3:17432268-17432287 | None:intergenic | 50.0% |
| ! | AGTGCTGGAGGAGAGTTTGA+GGG | + | chr1.3:17431579-17431598 | MS.gene25174:CDS | 50.0% |
| ! | CCCATGTGTCGGTATTGTGT+TGG | + | chr1.3:17427504-17427523 | MS.gene25174:intron | 50.0% |
| ! | TAGGGATGACCTGAGTTGAG+GGG | - | chr1.3:17431743-17431762 | None:intergenic | 50.0% |
| !! | AAGTGCTGGAGGAGAGTTTG+AGG | + | chr1.3:17431578-17431597 | MS.gene25174:CDS | 50.0% |
| !! | CTTCTAGCTCCCTCACAGTT+TGG | - | chr1.3:17430949-17430968 | None:intergenic | 50.0% |
| !! | CTTGGTTTGGGCATGTGTAG+TGG | + | chr1.3:17429449-17429468 | MS.gene25174:intron | 50.0% |
| AGAACTTCGTCGAGGAGACG+CGG | + | chr1.3:17427037-17427056 | MS.gene25174:CDS | 55.0% | |
| ATCATCCACCATGGAGGCCT+TGG | - | chr1.3:17430713-17430732 | None:intergenic | 55.0% | |
| CAGCAGAAGCTACTCTTCGG+AGG | + | chr1.3:17430375-17430394 | MS.gene25174:CDS | 55.0% | |
| CTATCCTCTGTATCTGCCGG+TGG | - | chr1.3:17431964-17431983 | None:intergenic | 55.0% | |
| CTGGGCGGGCCTATTAAAAG+TGG | - | chr1.3:17432586-17432605 | None:intergenic | 55.0% | |
| GAACACCATCCCCTCAACTC+AGG | + | chr1.3:17431731-17431750 | MS.gene25174:CDS | 55.0% | |
| GAAGAGTCAGTCCTTGCAGG+TGG | + | chr1.3:17430965-17430984 | MS.gene25174:CDS | 55.0% | |
| GGGAGATCCCAGTTCGAACT+TGG | - | chr1.3:17427744-17427763 | None:intergenic | 55.0% | |
| GTCGTTGCCTTGAGGAAAGC+TGG | + | chr1.3:17432021-17432040 | MS.gene25174:CDS | 55.0% | |
| GTGCTGGAGGAGAGTTTGAG+GGG | + | chr1.3:17431580-17431599 | MS.gene25174:CDS | 55.0% | |
| TCTATCGGGTAGTCGGTTGG+CGG | - | chr1.3:17432631-17432650 | None:intergenic | 55.0% | |
| TCTCGTCGCCAATCACTAGG+TGG | + | chr1.3:17431661-17431680 | MS.gene25174:CDS | 55.0% | |
| TCTGCCGGTGGGAAGTCATT+TGG | - | chr1.3:17431952-17431971 | None:intergenic | 55.0% | |
| ! | CACTTTTAATAGGCCCGCCC+AGG | + | chr1.3:17432584-17432603 | MS.gene25174:intron | 55.0% |
| ! | CGGTTCGGATCCAGTGAAAG+TGG | + | chr1.3:17427111-17427130 | MS.gene25174:CDS | 55.0% |
| ! | GATGACCTGAGTTGAGGGGA+TGG | - | chr1.3:17431739-17431758 | None:intergenic | 55.0% |
| !! | ATTGCGGCTCAAAGTGCTGG+AGG | + | chr1.3:17431567-17431586 | MS.gene25174:CDS | 55.0% |
| !! | TGATGGTGGCTCAAGGACAC+TGG | + | chr1.3:17431810-17431829 | MS.gene25174:CDS | 55.0% |
| AGTAGTCGCAGCACCGCAGA+GGG | + | chr1.3:17431616-17431635 | MS.gene25174:CDS | 60.0% | |
| CTTCCCACCGGCAGATACAG+AGG | + | chr1.3:17431957-17431976 | MS.gene25174:CDS | 60.0% | |
| GAGGAGATTTACGGCGACGG+AGG | + | chr1.3:17426968-17426987 | MS.gene25174:CDS | 60.0% | |
| GAGGGTCCATGCTGCTCAGA+AGG | + | chr1.3:17430394-17430413 | MS.gene25174:CDS | 60.0% | |
| GATTTACGGCGACGGAGGAG+CGG | + | chr1.3:17426973-17426992 | MS.gene25174:CDS | 60.0% | |
| GTGAGGGAGGGGTGATGCAT+AGG | + | chr1.3:17427994-17428013 | MS.gene25174:intron | 60.0% | |
| TAGAGAGTTGGGCCGTGCCA+AGG | + | chr1.3:17431151-17431170 | MS.gene25174:CDS | 60.0% | |
| TTGCTGCTGCACCACCTGCA+AGG | - | chr1.3:17430979-17430998 | None:intergenic | 60.0% | |
| ! | GCGACTCCGGCACCATTTTC+TGG | + | chr1.3:17426998-17427017 | MS.gene25174:CDS | 60.0% |
| CACCATGGAGGCCTTGGCCA+AGG | - | chr1.3:17430707-17430726 | None:intergenic | 65.0% | |
| CAGTAGTCGCAGCACCGCAG+AGG | + | chr1.3:17431615-17431634 | MS.gene25174:CDS | 65.0% | |
| CTTGGCCAAGGCCTCCATGG+TGG | + | chr1.3:17430705-17430724 | MS.gene25174:CDS | 65.0% | |
| TGCCTTGGCCAAGGCCTCCA+TGG | + | chr1.3:17430702-17430721 | MS.gene25174:CDS | 65.0% | |
| TTACGGCGACGGAGGAGCGG+TGG | + | chr1.3:17426976-17426995 | MS.gene25174:CDS | 70.0% | |
| CGGAGGAGCGGTGGCGACTC+CGG | + | chr1.3:17426985-17427004 | MS.gene25174:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17426965 | 17433425 | 17426965 | ID=MS.gene25174 |
| chr1.3 | mRNA | 17426965 | 17433425 | 17426965 | ID=MS.gene25174.t1;Parent=MS.gene25174 |
| chr1.3 | exon | 17426965 | 17427163 | 17426965 | ID=MS.gene25174.t1.exon1;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17426965 | 17427163 | 17426965 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17427260 | 17427345 | 17427260 | ID=MS.gene25174.t1.exon2;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17427260 | 17427345 | 17427260 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17430164 | 17430229 | 17430164 | ID=MS.gene25174.t1.exon3;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17430164 | 17430229 | 17430164 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17430317 | 17430487 | 17430317 | ID=MS.gene25174.t1.exon4;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17430317 | 17430487 | 17430317 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17430610 | 17430780 | 17430610 | ID=MS.gene25174.t1.exon5;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17430610 | 17430780 | 17430610 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17430884 | 17431039 | 17430884 | ID=MS.gene25174.t1.exon6;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17430884 | 17431039 | 17430884 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17431131 | 17431277 | 17431131 | ID=MS.gene25174.t1.exon7;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17431131 | 17431277 | 17431131 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17431399 | 17431470 | 17431399 | ID=MS.gene25174.t1.exon8;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17431399 | 17431470 | 17431399 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17431556 | 17432089 | 17431556 | ID=MS.gene25174.t1.exon9;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17431556 | 17432089 | 17431556 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17432189 | 17432382 | 17432189 | ID=MS.gene25174.t1.exon10;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17432189 | 17432382 | 17432189 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| chr1.3 | exon | 17433386 | 17433425 | 17433386 | ID=MS.gene25174.t1.exon11;Parent=MS.gene25174.t1 |
| chr1.3 | CDS | 17433386 | 17433425 | 17433386 | ID=cds.MS.gene25174.t1;Parent=MS.gene25174.t1 |
| Gene Sequence |
| Protein sequence |
