Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25269.t1 | AET03093.2 | 66.3 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 5.70E-78 | 300.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25269.t1 | G7LEP8 | 66.3 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 4.1e-78 | 300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25269 | 0.851208 | 1.03E-60 | -1.69E-46 |
| MS.gene049254 | MS.gene25269 | 0.845257 | 4.55E-59 | -1.69E-46 |
| MS.gene049350 | MS.gene25269 | 0.804996 | 1.65E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene25269 | 0.809369 | 1.96E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene25269 | 0.807953 | 3.93E-50 | -1.69E-46 |
| MS.gene049744 | MS.gene25269 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene050156 | MS.gene25269 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene051201 | MS.gene25269 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene25269 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene25269 | 0.815544 | 8.75E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene25269 | 0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene25269 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene25269 | 0.810512 | 1.11E-50 | -1.69E-46 |
| MS.gene052168 | MS.gene25269 | 0.821249 | 4.46E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene25269 | 0.803238 | 3.84E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene25269 | 0.831356 | 1.75E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene25269 | 0.801268 | 9.76E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene25269 | 0.817441 | 3.29E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene25269 | 0.832461 | 9.33E-56 | -1.69E-46 |
| MS.gene052534 | MS.gene25269 | 0.823504 | 1.34E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene25269 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene25269 | 0.814314 | 1.64E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene25269 | 0.800276 | 1.55E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene25269 | 0.838271 | 3.18E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene25269 | 0.812845 | 3.45E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene25269 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene25269 | 0.802894 | 4.52E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene25269 | 0.808871 | 2.50E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene25269 | 0.801225 | 9.96E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene25269 | 0.804685 | 1.92E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene25269 | 0.814704 | 1.35E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene25269 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene25269 | 0.812799 | 3.53E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene25269 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene25269 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene25269 | 0.858005 | 1.11E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene25269 | 0.819256 | 1.28E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene25269 | 0.818134 | 2.30E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene25269 | 0.821833 | 3.27E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene25269 | 0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene25269 | 0.828917 | 6.89E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene25269 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene25269 | 0.841482 | 4.63E-58 | -1.69E-46 |
| MS.gene056174 | MS.gene25269 | 0.820343 | 7.21E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene25269 | 0.819492 | 1.13E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene25269 | 0.813548 | 2.42E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene25269 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene25269 | 0.810983 | 8.79E-51 | -1.69E-46 |
| MS.gene057132 | MS.gene25269 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene25269 | 0.826606 | 2.47E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene25269 | 0.804397 | 2.20E-49 | -1.69E-46 |
| MS.gene057611 | MS.gene25269 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene25269 | 0.827118 | 1.87E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene25269 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene058427 | MS.gene25269 | 0.803951 | 2.73E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene25269 | 0.832762 | 7.86E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene25269 | 0.817737 | 2.82E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene25269 | 0.815616 | 8.44E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene25269 | 0.824669 | 7.12E-54 | -1.69E-46 |
| MS.gene059438 | MS.gene25269 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene25269 | 0.83729 | 5.67E-57 | -1.69E-46 |
| MS.gene059570 | MS.gene25269 | 0.840506 | 8.35E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene25269 | 0.825749 | 3.96E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene25269 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene25269 | 0.821066 | 4.92E-53 | -1.69E-46 |
| MS.gene061188 | MS.gene25269 | 0.805734 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25269.t1 | MTR_8g062660 | 66.279 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 1.30e-102 | 311 |
| MS.gene25269.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 8.43e-37 | 137 |
| MS.gene25269.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 8.45e-37 | 137 |
| MS.gene25269.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 9.35e-37 | 137 |
| MS.gene25269.t1 | MTR_3g005240 | 84.058 | 69 | 11 | 0 | 176 | 244 | 1569 | 1637 | 9.92e-31 | 120 |
| MS.gene25269.t1 | MTR_2g021190 | 45.349 | 86 | 41 | 3 | 1 | 83 | 293 | 375 | 1.31e-15 | 75.5 |
| MS.gene25269.t1 | MTR_2g029990 | 41.860 | 86 | 44 | 3 | 1 | 83 | 323 | 405 | 3.06e-13 | 68.9 |
| MS.gene25269.t1 | MTR_1g114700 | 42.697 | 89 | 45 | 3 | 1 | 83 | 302 | 390 | 4.41e-13 | 68.2 |
| MS.gene25269.t1 | MTR_0044s0300 | 44.944 | 89 | 43 | 3 | 1 | 83 | 304 | 392 | 6.42e-13 | 67.8 |
| MS.gene25269.t1 | MTR_3g083660 | 47.191 | 89 | 40 | 5 | 1 | 83 | 195 | 282 | 9.40e-13 | 66.6 |
| MS.gene25269.t1 | MTR_2g078870 | 42.222 | 90 | 45 | 3 | 1 | 83 | 221 | 310 | 1.17e-11 | 63.9 |
| MS.gene25269.t1 | MTR_1g055070 | 41.667 | 84 | 44 | 2 | 3 | 81 | 310 | 393 | 1.23e-11 | 63.9 |
| MS.gene25269.t1 | MTR_3g030320 | 44.444 | 90 | 43 | 4 | 1 | 83 | 212 | 301 | 1.95e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCTGCTGATGTTCTT+AGG | 0.260894 | 8.3:+40012206 | MS.gene25269:CDS |
| AATTTCAGAAGAATAATTTC+TGG | 0.298959 | 8.3:-40010059 | None:intergenic |
| TATTTGCGTCGATCACTTGC+TGG | 0.308751 | 8.3:+40011098 | MS.gene25269:CDS |
| GCTTCAACATAGAGCTTATA+TGG | 0.314194 | 8.3:+40010087 | MS.gene25269:CDS |
| AAAAGAAGAAACAAATATCT+AGG | 0.326693 | 8.3:+40011033 | MS.gene25269:CDS |
| ATATGGATGATGATGGAATT+CGG | 0.334275 | 8.3:+40009893 | None:intergenic |
| TCTTAATATTACTACTCATT+TGG | 0.342974 | 8.3:+40011073 | MS.gene25269:CDS |
| TATGGATGATGATGGAATTC+GGG | 0.367767 | 8.3:+40009894 | None:intergenic |
| TTTGACAAGTTTGGAGTGTA+AGG | 0.381139 | 8.3:+40010983 | MS.gene25269:CDS |
| TTTGACAAAGGTTGAACAAC+AGG | 0.391782 | 8.3:-40012145 | None:intergenic |
| AAGCTTTCCTTGTAGACTAC+TGG | 0.411811 | 8.3:-40010112 | None:intergenic |
| TTCTAATGCTGCATAATAAG+AGG | 0.448327 | 8.3:+40010011 | MS.gene25269:CDS |
| TGAGTAATAGCTTTGATTCG+AGG | 0.460122 | 8.3:-40011203 | None:intergenic |
| CTCTGAAATATATAAAACCT+TGG | 0.479174 | 8.3:-40009978 | None:intergenic |
| AAATGAGTAGTAATATTAAG+AGG | 0.494339 | 8.3:-40011071 | None:intergenic |
| AATAAGAGGCAATGTCAGTT+GGG | 0.498008 | 8.3:+40010025 | MS.gene25269:CDS |
| ATATATAAAACCTTGGCAAA+GGG | 0.514775 | 8.3:-40009971 | None:intergenic |
| TAATAAGAGGCAATGTCAGT+TGG | 0.515862 | 8.3:+40010024 | MS.gene25269:CDS |
| ATTTGCGTCGATCACTTGCT+GGG | 0.516272 | 8.3:+40011099 | MS.gene25269:CDS |
| CTTGATATCGCCTTGTTCGT+TGG | 0.517485 | 8.3:+40010132 | MS.gene25269:CDS |
| GTTCTTAGGAAAAGAAACTC+TGG | 0.518016 | 8.3:+40012220 | MS.gene25269:CDS |
| AAAGAAGAAACAAATATCTA+GGG | 0.534460 | 8.3:+40011034 | MS.gene25269:CDS |
| AAATAAACAAACCTTGCCAT+TGG | 0.536826 | 8.3:-40011240 | None:intergenic |
| AATATATAAAACCTTGGCAA+AGG | 0.542362 | 8.3:-40009972 | None:intergenic |
| TTAATGATCTTGTTTGACAA+AGG | 0.558427 | 8.3:-40012157 | None:intergenic |
| TTGACAAGTTTGGAGTGTAA+GGG | 0.560372 | 8.3:+40010984 | MS.gene25269:CDS |
| TTCACTGTGGCCAACGAACA+AGG | 0.560502 | 8.3:-40010142 | None:intergenic |
| GGATGCTGATCTGCAATGGA+AGG | 0.566891 | 8.3:-40009950 | None:intergenic |
| AGATCAGCATCCCTTTGCCA+AGG | 0.582019 | 8.3:+40009961 | MS.gene25269:CDS |
| CTGATCTGCAATGGAAGGAA+TGG | 0.582531 | 8.3:-40009945 | None:intergenic |
| TATGGATCCAGTAGTCTACA+AGG | 0.586786 | 8.3:+40010105 | MS.gene25269:CDS |
| ACTAGCAAATGCCAATGGCA+AGG | 0.616872 | 8.3:+40011229 | MS.gene25269:CDS |
| CATAAACTAGCAAATGCCAA+TGG | 0.625784 | 8.3:+40011224 | MS.gene25269:CDS |
| AAAGGGATGCTGATCTGCAA+TGG | 0.626363 | 8.3:-40009954 | None:intergenic |
| AATTCGGGAATAATGAGTCA+TGG | 0.641992 | 8.3:+40009909 | MS.gene25269:CDS |
| GTAAAACAAACATCAGTCTG+AGG | 0.652774 | 8.3:-40011170 | None:intergenic |
| CTGCCGAAAAGTACTTGTGA+TGG | 0.675795 | 8.3:-40012105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTATTCTTAAGT+TGG | + | chr8.3:40012002-40012021 | MS.gene25269:intron | 10.0% |
| !! | TTATAATAATAAAATTGTCA+AGG | - | chr8.3:40011453-40011472 | None:intergenic | 10.0% |
| !!! | TTTAATTTGTTTCTTTTTGT+AGG | + | chr8.3:40012042-40012061 | MS.gene25269:intron | 15.0% |
| !! | AAAAGAACTACTTAAGAATA+AGG | - | chr8.3:40011786-40011805 | None:intergenic | 20.0% |
| !! | AAAAGAAGAAACAAATATCT+AGG | + | chr8.3:40011033-40011052 | MS.gene25269:CDS | 20.0% |
| !! | AAAATGCAACATGTAATAAT+TGG | - | chr8.3:40010344-40010363 | None:intergenic | 20.0% |
| !! | AAAGAAGAAACAAATATCTA+GGG | + | chr8.3:40011034-40011053 | MS.gene25269:CDS | 20.0% |
| !! | AAATGAGTAGTAATATTAAG+AGG | - | chr8.3:40011074-40011093 | None:intergenic | 20.0% |
| !! | AATTTCAGAAGAATAATTTC+TGG | - | chr8.3:40010062-40010081 | None:intergenic | 20.0% |
| !! | ATAGCTCATATCATATTTAT+AGG | + | chr8.3:40010760-40010779 | MS.gene25269:intron | 20.0% |
| !! | GTTTATAATGTCAATTCATA+AGG | - | chr8.3:40010296-40010315 | None:intergenic | 20.0% |
| !! | TCTTAATATTACTACTCATT+TGG | + | chr8.3:40011073-40011092 | MS.gene25269:CDS | 20.0% |
| !! | TGAAAATTGAAAATGAATAG+TGG | + | chr8.3:40010675-40010694 | MS.gene25269:intron | 20.0% |
| !! | TGCAAAATATACTCTTTATT+TGG | + | chr8.3:40010599-40010618 | MS.gene25269:intron | 20.0% |
| !!! | ATACAGTTTTAAGAAATTAC+AGG | - | chr8.3:40010852-40010871 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTCTTCTTTTCA+AGG | - | chr8.3:40011031-40011050 | None:intergenic | 20.0% |
| !!! | TAACCAAGGTTTTAAATTTT+TGG | + | chr8.3:40011301-40011320 | MS.gene25269:intron | 20.0% |
| !!! | TTTTTGATAGCAATAATGAA+AGG | - | chr8.3:40011505-40011524 | None:intergenic | 20.0% |
| ! | AATATATAAAACCTTGGCAA+AGG | - | chr8.3:40009975-40009994 | None:intergenic | 25.0% |
| ! | ATATATAAAACCTTGGCAAA+GGG | - | chr8.3:40009974-40009993 | None:intergenic | 25.0% |
| ! | ATCAATGATGGTATATTTGT+TGG | + | chr8.3:40010164-40010183 | MS.gene25269:intron | 25.0% |
| !! | GAGTATATTTTGCAATTATC+AGG | - | chr8.3:40010593-40010612 | None:intergenic | 25.0% |
| !! | GTTCCAAAAATTTAAAACCT+TGG | - | chr8.3:40011307-40011326 | None:intergenic | 25.0% |
| !! | TTAATGATCTTGTTTGACAA+AGG | - | chr8.3:40012160-40012179 | None:intergenic | 25.0% |
| !! | TTCATAGTTTTTGACAAGTT+TGG | + | chr8.3:40010974-40010993 | MS.gene25269:intron | 25.0% |
| !!! | AGGTTTTAAATTTTTGGAAC+TGG | + | chr8.3:40011307-40011326 | MS.gene25269:intron | 25.0% |
| !!! | CAAGGTTTTATATATTTCAG+AGG | + | chr8.3:40009979-40009998 | MS.gene25269:CDS | 25.0% |
| !!! | CTCATTAAATGTTTTAACCA+AGG | + | chr8.3:40011287-40011306 | MS.gene25269:intron | 25.0% |
| !!! | CTCTGAAATATATAAAACCT+TGG | - | chr8.3:40009981-40010000 | None:intergenic | 25.0% |
| !!! | GCTAGTTTTTTAATTTGAGA+AGG | + | chr8.3:40010439-40010458 | MS.gene25269:intron | 25.0% |
| !!! | TGCTTAAAAACAGAAGTATT+GGG | + | chr8.3:40010932-40010951 | MS.gene25269:intron | 25.0% |
| AAAACTTTCAACTTCTTCTG+AGG | - | chr8.3:40011971-40011990 | None:intergenic | 30.0% | |
| AAATAAACAAACCTTGCCAT+TGG | - | chr8.3:40011243-40011262 | None:intergenic | 30.0% | |
| CAAATTAAAAAACTAGCAGC+AGG | - | chr8.3:40010436-40010455 | None:intergenic | 30.0% | |
| CACAACAATCTTTGATATTG+CGG | + | chr8.3:40011341-40011360 | MS.gene25269:intron | 30.0% | |
| CTTATCTTCAAATCATACCT+GGG | + | chr8.3:40010560-40010579 | MS.gene25269:intron | 30.0% | |
| TATACCAAGAAGATTGTGTA+GGG | + | chr8.3:40010869-40010888 | MS.gene25269:intron | 30.0% | |
| TGACTATATGACTCTTGTTA+AGG | - | chr8.3:40011387-40011406 | None:intergenic | 30.0% | |
| TTCTAATGCTGCATAATAAG+AGG | + | chr8.3:40010011-40010030 | MS.gene25269:CDS | 30.0% | |
| ! | GTGCAAATATATACTGCTTT+TGG | + | chr8.3:40011857-40011876 | MS.gene25269:intron | 30.0% |
| ! | GTGCTTAAAAACAGAAGTAT+TGG | + | chr8.3:40010931-40010950 | MS.gene25269:intron | 30.0% |
| !! | AAAAACAGAAGTATTGGGTT+TGG | + | chr8.3:40010937-40010956 | MS.gene25269:intron | 30.0% |
| !! | ATATACTGCTTTTGGTAGTT+TGG | + | chr8.3:40011865-40011884 | MS.gene25269:intron | 30.0% |
| !!! | TCAGACTGATGTTTGTTTTA+CGG | + | chr8.3:40011172-40011191 | MS.gene25269:CDS | 30.0% |
| AAAAGACAGGTTGCTAAAGT+TGG | + | chr8.3:40010514-40010533 | MS.gene25269:intron | 35.0% | |
| AAAATCGCCATCATAGAGTA+TGG | + | chr8.3:40011643-40011662 | MS.gene25269:intron | 35.0% | |
| AACAATCTTTGATATTGCGG+AGG | + | chr8.3:40011344-40011363 | MS.gene25269:intron | 35.0% | |
| AATAAGAGGCAATGTCAGTT+GGG | + | chr8.3:40010025-40010044 | MS.gene25269:CDS | 35.0% | |
| AATTATCAGGATAATTGCCC+AGG | - | chr8.3:40010580-40010599 | None:intergenic | 35.0% | |
| AATTCGGGAATAATGAGTCA+TGG | + | chr8.3:40009909-40009928 | MS.gene25269:CDS | 35.0% | |
| ACAATCTTTGATATTGCGGA+GGG | + | chr8.3:40011345-40011364 | MS.gene25269:intron | 35.0% | |
| ACAGTATAAGAGCTTCTACT+CGG | - | chr8.3:40011760-40011779 | None:intergenic | 35.0% | |
| CATAAACTAGCAAATGCCAA+TGG | + | chr8.3:40011224-40011243 | MS.gene25269:CDS | 35.0% | |
| CCAGGTATGATTTGAAGATA+AGG | - | chr8.3:40010562-40010581 | None:intergenic | 35.0% | |
| CCTTATCTTCAAATCATACC+TGG | + | chr8.3:40010559-40010578 | MS.gene25269:intron | 35.0% | |
| GCTTCAACATAGAGCTTATA+TGG | + | chr8.3:40010087-40010106 | MS.gene25269:CDS | 35.0% | |
| GTAAAACAAACATCAGTCTG+AGG | - | chr8.3:40011173-40011192 | None:intergenic | 35.0% | |
| GTATACCAAGAAGATTGTGT+AGG | + | chr8.3:40010868-40010887 | MS.gene25269:intron | 35.0% | |
| GTTCTTAGGAAAAGAAACTC+TGG | + | chr8.3:40012220-40012239 | MS.gene25269:CDS | 35.0% | |
| TAATAAGAGGCAATGTCAGT+TGG | + | chr8.3:40010024-40010043 | MS.gene25269:CDS | 35.0% | |
| TGGCAAAGAAAGAAGAGAAA+AGG | - | chr8.3:40010324-40010343 | None:intergenic | 35.0% | |
| TTTAGACTGCTGCTGTTATA+CGG | + | chr8.3:40011686-40011705 | MS.gene25269:intron | 35.0% | |
| TTTGACAAAGGTTGAACAAC+AGG | - | chr8.3:40012148-40012167 | None:intergenic | 35.0% | |
| ! | ACACCATCACAAGTACTTTT+CGG | + | chr8.3:40012102-40012121 | MS.gene25269:CDS | 35.0% |
| ! | ACTTTAGCAACCTGTCTTTT+AGG | - | chr8.3:40010514-40010533 | None:intergenic | 35.0% |
| ! | CTTTAGCAACCTGTCTTTTA+GGG | - | chr8.3:40010513-40010532 | None:intergenic | 35.0% |
| ! | TTGACAAGTTTGGAGTGTAA+GGG | + | chr8.3:40010984-40011003 | MS.gene25269:CDS | 35.0% |
| ! | TTTGACAAGTTTGGAGTGTA+AGG | + | chr8.3:40010983-40011002 | MS.gene25269:CDS | 35.0% |
| !! | ATACCATCATTGATTCACTG+TGG | - | chr8.3:40010158-40010177 | None:intergenic | 35.0% |
| !! | GTGCTACTGTTTTCATTCAT+GGG | + | chr8.3:40011713-40011732 | MS.gene25269:intron | 35.0% |
| !! | TCAACTTCTTCTGAGGTAAA+TGG | - | chr8.3:40011964-40011983 | None:intergenic | 35.0% |
| !! | TGAGTAATAGCTTTGATTCG+AGG | - | chr8.3:40011206-40011225 | None:intergenic | 35.0% |
| !! | TGTGCTACTGTTTTCATTCA+TGG | + | chr8.3:40011712-40011731 | MS.gene25269:intron | 35.0% |
| !!! | TGTCAAGATTTTAGTTGACG+TGG | + | chr8.3:40010625-40010644 | MS.gene25269:intron | 35.0% |
| AAGAACACAGAGGAAACACA+GGG | - | chr8.3:40011822-40011841 | None:intergenic | 40.0% | |
| AAGCTTTCCTTGTAGACTAC+TGG | - | chr8.3:40010115-40010134 | None:intergenic | 40.0% | |
| GTGTGTACCATACTCTATGA+TGG | - | chr8.3:40011653-40011672 | None:intergenic | 40.0% | |
| TATGGATCCAGTAGTCTACA+AGG | + | chr8.3:40010105-40010124 | MS.gene25269:CDS | 40.0% | |
| TGATCCTCGAGTTTGATACT+CGG | + | chr8.3:40011574-40011593 | MS.gene25269:intron | 40.0% | |
| ! | AAGTTTCAAGTCAACGTCTG+TGG | + | chr8.3:40010799-40010818 | MS.gene25269:intron | 40.0% |
| AAAGGGATGCTGATCTGCAA+TGG | - | chr8.3:40009957-40009976 | None:intergenic | 45.0% | |
| AAGACCGAGTATCAAACTCG+AGG | - | chr8.3:40011581-40011600 | None:intergenic | 45.0% | |
| ACAGCCCTACACAATCTTCT+TGG | - | chr8.3:40010876-40010895 | None:intergenic | 45.0% | |
| ACTAGCAAATGCCAATGGCA+AGG | + | chr8.3:40011229-40011248 | MS.gene25269:CDS | 45.0% | |
| AGGACAAAGACTCGCTCATT+TGG | - | chr8.3:40010276-40010295 | None:intergenic | 45.0% | |
| CAAGAACACAGAGGAAACAC+AGG | - | chr8.3:40011823-40011842 | None:intergenic | 45.0% | |
| CACCATTGCAGCTAAGATCA+GGG | - | chr8.3:40010827-40010846 | None:intergenic | 45.0% | |
| CCAGAAATGCAAGAACACAG+AGG | - | chr8.3:40011832-40011851 | None:intergenic | 45.0% | |
| CCTCTGTGTTCTTGCATTTC+TGG | + | chr8.3:40011829-40011848 | MS.gene25269:intron | 45.0% | |
| CTGATCTGCAATGGAAGGAA+TGG | - | chr8.3:40009948-40009967 | None:intergenic | 45.0% | |
| CTGCTTCTGCTGATGTTCTT+AGG | + | chr8.3:40012206-40012225 | MS.gene25269:CDS | 45.0% | |
| TGGCCACAGTGAATCAATGA+TGG | + | chr8.3:40010152-40010171 | MS.gene25269:intron | 45.0% | |
| ! | ATTTGCGTCGATCACTTGCT+GGG | + | chr8.3:40011099-40011118 | MS.gene25269:CDS | 45.0% |
| ! | CTTGATATCGCCTTGTTCGT+TGG | + | chr8.3:40010132-40010151 | MS.gene25269:CDS | 45.0% |
| ! | TATTTGCGTCGATCACTTGC+TGG | + | chr8.3:40011098-40011117 | MS.gene25269:CDS | 45.0% |
| !! | AGCAACCTGTCTTTTAGGGA+CGG | - | chr8.3:40010509-40010528 | None:intergenic | 45.0% |
| !! | CTGCCGAAAAGTACTTGTGA+TGG | - | chr8.3:40012108-40012127 | None:intergenic | 45.0% |
| AGATCAGCATCCCTTTGCCA+AGG | + | chr8.3:40009961-40009980 | MS.gene25269:CDS | 50.0% | |
| GCACCATTGCAGCTAAGATC+AGG | - | chr8.3:40010828-40010847 | None:intergenic | 50.0% | |
| GGAGCTATGTGTGACAGAGT+TGG | + | chr8.3:40011886-40011905 | MS.gene25269:intron | 50.0% | |
| GGATGCTGATCTGCAATGGA+AGG | - | chr8.3:40009953-40009972 | None:intergenic | 50.0% | |
| TGCCCTGATCTTAGCTGCAA+TGG | + | chr8.3:40010822-40010841 | MS.gene25269:intron | 50.0% | |
| TGTTGCCGTCCCTAAAAGAC+AGG | + | chr8.3:40010501-40010520 | MS.gene25269:intron | 50.0% | |
| TTCACTGTGGCCAACGAACA+AGG | - | chr8.3:40010145-40010164 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 40009902 | 40012273 | 40009902 | ID=MS.gene25269 |
| chr8.3 | mRNA | 40009902 | 40012273 | 40009902 | ID=MS.gene25269.t1;Parent=MS.gene25269 |
| chr8.3 | exon | 40009902 | 40010159 | 40009902 | ID=MS.gene25269.t1.exon1;Parent=MS.gene25269.t1 |
| chr8.3 | CDS | 40009902 | 40010159 | 40009902 | ID=cds.MS.gene25269.t1;Parent=MS.gene25269.t1 |
| chr8.3 | exon | 40010981 | 40011250 | 40010981 | ID=MS.gene25269.t1.exon2;Parent=MS.gene25269.t1 |
| chr8.3 | CDS | 40010981 | 40011250 | 40010981 | ID=cds.MS.gene25269.t1;Parent=MS.gene25269.t1 |
| chr8.3 | exon | 40012064 | 40012273 | 40012064 | ID=MS.gene25269.t1.exon3;Parent=MS.gene25269.t1 |
| chr8.3 | CDS | 40012064 | 40012273 | 40012064 | ID=cds.MS.gene25269.t1;Parent=MS.gene25269.t1 |
| Gene Sequence |
| Protein sequence |
