Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25478.t1 | XP_003628361.1 | 94.9 | 491 | 23 | 1 | 1 | 489 | 1 | 491 | 2.20E-254 | 887.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25478.t1 | Q9SWI1 | 35.1 | 499 | 194 | 23 | 1 | 457 | 1 | 411 | 8.0e-40 | 166.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25478.t1 | G7LA55 | 94.9 | 491 | 23 | 1 | 1 | 489 | 1 | 491 | 1.6e-254 | 887.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene25478 | 0.80437 | 2.23E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene25478 | 0.826459 | 2.68E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene25478 | 0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene25478 | 0.808757 | 2.65E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene25478 | 0.805128 | 1.55E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene25478 | 0.815949 | 7.11E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene25478 | 0.806975 | 6.33E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene25478 | 0.838678 | 2.49E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene25478 | 0.819054 | 1.42E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene25478 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene25478 | 0.818498 | 1.90E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene25478 | 0.814477 | 1.51E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene25478 | 0.835153 | 1.98E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene25478 | 0.802695 | 4.97E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene25478 | 0.815012 | 1.15E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene25478 | 0.802642 | 5.09E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene25478 | 0.840561 | 8.07E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene25478 | 0.830937 | 2.22E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene25478 | 0.805623 | 1.22E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene25478 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene25478 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene25478 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene25478 | 0.800067 | 1.72E-48 | -1.69E-46 |
| MS.gene054595 | MS.gene25478 | 0.801076 | 1.07E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene25478 | 0.842574 | 2.38E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene25478 | 0.823365 | 1.44E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene25478 | 0.839189 | 1.84E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene25478 | 0.833509 | 5.12E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene25478 | 0.809805 | 1.58E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene25478 | 0.832126 | 1.13E-55 | -1.69E-46 |
| MS.gene057019 | MS.gene25478 | 0.819785 | 9.68E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene25478 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene25478 | 0.814816 | 1.27E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene25478 | 0.830689 | 2.55E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene25478 | 0.807118 | 5.91E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene25478 | 0.802612 | 5.17E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene25478 | 0.812304 | 4.54E-51 | -1.69E-46 |
| MS.gene059368 | MS.gene25478 | 0.839072 | 1.97E-57 | -1.69E-46 |
| MS.gene059455 | MS.gene25478 | 0.838071 | 3.58E-57 | -1.69E-46 |
| MS.gene059674 | MS.gene25478 | 0.814619 | 1.40E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene25478 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene25478 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene25478 | 0.828636 | 8.05E-55 | -1.69E-46 |
| MS.gene06097 | MS.gene25478 | 0.815629 | 8.38E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25478.t1 | MTR_8g055860 | 96.741 | 491 | 14 | 1 | 1 | 489 | 1 | 491 | 0.0 | 982 |
| MS.gene25478.t1 | MTR_5g040340 | 47.451 | 510 | 180 | 22 | 17 | 489 | 7 | 465 | 1.96e-110 | 335 |
| MS.gene25478.t1 | MTR_7g088200 | 28.657 | 335 | 193 | 11 | 112 | 421 | 129 | 442 | 2.24e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25478.t1 | AT2G02950 | 35.928 | 501 | 187 | 25 | 1 | 457 | 1 | 411 | 9.34e-50 | 176 |
| MS.gene25478.t1 | AT1G14280 | 32.952 | 437 | 147 | 22 | 75 | 458 | 74 | 417 | 9.65e-36 | 138 |
Find 82 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGCTGTTAGAGTTTC+TGG | 0.087161 | 8.3:-43023075 | MS.gene25478:CDS |
| GCAGAAGAAATTGGAGTATT+TGG | 0.123215 | 8.3:-43024104 | MS.gene25478:CDS |
| GGTTTCAATGGTGTCCTTAT+TGG | 0.178083 | 8.3:+43023156 | None:intergenic |
| AGAAAATCACTTGAAGTATT+TGG | 0.207408 | 8.3:-43023516 | MS.gene25478:CDS |
| GCGGCGGCCTGGCATGTTAT+TGG | 0.254877 | 8.3:-43023109 | MS.gene25478:CDS |
| AATAACAAAACTTCTAAGTA+TGG | 0.262272 | 8.3:-43023771 | MS.gene25478:CDS |
| ATTCATTGACCAATGATAAA+AGG | 0.266711 | 8.3:-43023458 | MS.gene25478:CDS |
| GGAGTTTCTATGGTTGATAA+AGG | 0.283830 | 8.3:+43024148 | None:intergenic |
| GATGAAGAGGGGAGTTTCTA+TGG | 0.288069 | 8.3:+43024138 | None:intergenic |
| CCTTCTTTCATATTCAAGTA+TGG | 0.298687 | 8.3:+43024215 | None:intergenic |
| TTTCCAGGAGAGACAAATTA+TGG | 0.316379 | 8.3:-43022964 | MS.gene25478:CDS |
| CACTCTTTAAGAGTGCATTT+TGG | 0.316916 | 8.3:+43023928 | None:intergenic |
| TTCAAAAGCAAGAGAAGTTA+AGG | 0.319574 | 8.3:-43023632 | MS.gene25478:CDS |
| TCTCAAGTGGCAAGGTTTCC+AGG | 0.321527 | 8.3:-43022979 | MS.gene25478:CDS |
| CGGCGGCCTGGCATGTTATT+GGG | 0.322763 | 8.3:-43023108 | MS.gene25478:CDS |
| AAGCAATGAAAAGAATAGTT+TGG | 0.330151 | 8.3:-43023601 | MS.gene25478:CDS |
| TTGTTTCTCATAAGTTATAA+AGG | 0.342594 | 8.3:+43023047 | None:intergenic |
| GTGGAAAAGGCAGAAGAAAT+TGG | 0.345679 | 8.3:-43024113 | MS.gene25478:CDS |
| TGATAAAGGGATTGATTGTT+TGG | 0.345694 | 8.3:+43024162 | None:intergenic |
| GGTGTCTCCTTAGCGACTTT+TGG | 0.350009 | 8.3:+43023135 | None:intergenic |
| TCACTCGGCGCATAACAATT+CGG | 0.363432 | 8.3:+43023267 | None:intergenic |
| AGAAAGTACCAAGTTGAGTA+TGG | 0.364459 | 8.3:-43023987 | MS.gene25478:CDS |
| TTATTGATCAATATTGGATT+TGG | 0.374889 | 8.3:+43023489 | None:intergenic |
| AGTGGAGTGAGAAATTCTAT+AGG | 0.378295 | 8.3:-43023909 | MS.gene25478:CDS |
| TGAAGCATGTGGCGAGTTAG+AGG | 0.378519 | 8.3:+43022891 | None:intergenic |
| AAATGTTTGAGTTTACAATA+AGG | 0.381327 | 8.3:-43023182 | MS.gene25478:CDS |
| CATTTGATGAAGGTTGGTTT+TGG | 0.386793 | 8.3:+43024298 | None:intergenic |
| AGACAAATTATGGTTCAAAA+AGG | 0.388140 | 8.3:-43022954 | MS.gene25478:CDS |
| TTACAATAAGGAGTCCAATA+AGG | 0.397883 | 8.3:-43023170 | MS.gene25478:CDS |
| CACTCGGCGCATAACAATTC+GGG | 0.399242 | 8.3:+43023268 | None:intergenic |
| TCTAAGTATGGTGCAGTTCA+AGG | 0.411902 | 8.3:-43023759 | MS.gene25478:CDS |
| GAACCATAATTTGTCTCTCC+TGG | 0.414611 | 8.3:+43022961 | None:intergenic |
| CCCTCTTCATCAAGTGGAAA+AGG | 0.418252 | 8.3:-43024126 | MS.gene25478:CDS |
| GTGGAGTGAGAAATTCTATA+GGG | 0.424894 | 8.3:-43023908 | MS.gene25478:CDS |
| GAGTTTCTATGGTTGATAAA+GGG | 0.435292 | 8.3:+43024149 | None:intergenic |
| TTATACCACACCACCATTGC+AGG | 0.447302 | 8.3:-43022914 | MS.gene25478:CDS |
| GAGACACCGAGGCGGCGGCC+TGG | 0.448368 | 8.3:-43023120 | MS.gene25478:CDS |
| AGGTACTTTGTAGAAGGTCT+TGG | 0.451368 | 8.3:+43024044 | None:intergenic |
| TCAAAAGCAAGAGAAGTTAA+GGG | 0.452923 | 8.3:-43023631 | MS.gene25478:CDS |
| TCTAGTAAGAAAATTGTTGT+TGG | 0.460554 | 8.3:+43023323 | None:intergenic |
| CAGAAACTCTAACAGCTTTG+TGG | 0.461380 | 8.3:+43023076 | None:intergenic |
| AACATGCCAGGCCGCCGCCT+CGG | 0.469548 | 8.3:+43023114 | None:intergenic |
| TTGTTTCCTTTCTCTGAGGA+AGG | 0.475302 | 8.3:+43024024 | None:intergenic |
| AGTAAGAAAATTGTTGTTGG+AGG | 0.489605 | 8.3:+43023326 | None:intergenic |
| TAAAACTGATTTCACTTGCA+TGG | 0.493162 | 8.3:+43023793 | None:intergenic |
| TGAAAGTTTGCATTTGATGA+AGG | 0.498109 | 8.3:+43024288 | None:intergenic |
| CATTCTATGCTTGCCTCACT+CGG | 0.500118 | 8.3:+43023252 | None:intergenic |
| GCGCATAACAATTCGGGCTA+AGG | 0.501346 | 8.3:+43023274 | None:intergenic |
| GTAAGAAAATTGTTGTTGGA+GGG | 0.511679 | 8.3:+43023327 | None:intergenic |
| AAAGTACCTTCCTCAGAGAA+AGG | 0.512613 | 8.3:-43024030 | MS.gene25478:CDS |
| TTGAGTAAGATTTCTGAGCT+AGG | 0.514673 | 8.3:+43023669 | None:intergenic |
| AGTTTGCATTTGATGAAGGT+TGG | 0.517268 | 8.3:+43024292 | None:intergenic |
| TGAGGAAGGTACTTTGTAGA+AGG | 0.524612 | 8.3:+43024038 | None:intergenic |
| TTGCATCCCAATAACATGCC+AGG | 0.535418 | 8.3:+43023102 | None:intergenic |
| CCATACTTGAATATGAAAGA+AGG | 0.535861 | 8.3:-43024215 | MS.gene25478:CDS |
| GTGAGAAATTCTATAGGGAA+TGG | 0.537374 | 8.3:-43023903 | MS.gene25478:CDS |
| TTTGAGATTGAGAGTCTCAA+AGG | 0.541185 | 8.3:-43023354 | MS.gene25478:CDS |
| AAACTCCCCTCTTCATCAAG+TGG | 0.542981 | 8.3:-43024132 | MS.gene25478:CDS |
| CTAAGGAGACACCGAGGCGG+CGG | 0.545196 | 8.3:-43023125 | MS.gene25478:CDS |
| CGAGTGAGGCAAGCATAGAA+TGG | 0.547758 | 8.3:-43023251 | MS.gene25478:CDS |
| GTTGACACAGAACTAATACT+TGG | 0.553240 | 8.3:+43023960 | None:intergenic |
| AGAAAACAGCATCATGGAGG+TGG | 0.557647 | 8.3:+43024240 | None:intergenic |
| TTGGAGTTCCATACTCAACT+TGG | 0.566689 | 8.3:+43023979 | None:intergenic |
| ATGGAGAGAAAACAGCATCA+TGG | 0.576053 | 8.3:+43024234 | None:intergenic |
| AAACAATACTAATTCTCAAG+TGG | 0.581231 | 8.3:-43022992 | MS.gene25478:CDS |
| ATACTAATTCTCAAGTGGCA+AGG | 0.582567 | 8.3:-43022987 | MS.gene25478:CDS |
| AAGCAAGAGAAGTTAAGGGT+AGG | 0.593464 | 8.3:-43023627 | MS.gene25478:CDS |
| ATTGAAACCAAAAGTCGCTA+AGG | 0.601572 | 8.3:-43023142 | MS.gene25478:CDS |
| TATAGTAACTTTGAAGCATG+TGG | 0.603295 | 8.3:+43022880 | None:intergenic |
| GAGTTAGAGGCCTGCAATGG+TGG | 0.606643 | 8.3:+43022904 | None:intergenic |
| TCCTCAGAGAAAGGAAACAA+TGG | 0.613500 | 8.3:-43024021 | MS.gene25478:CDS |
| AAAAGGCATGGACAACAACA+TGG | 0.618653 | 8.3:-43022937 | MS.gene25478:CDS |
| CAAAATGCACTCTTAAAGAG+TGG | 0.623280 | 8.3:-43023927 | MS.gene25478:CDS |
| GAATTGTTATGCGCCGAGTG+AGG | 0.631139 | 8.3:-43023265 | MS.gene25478:CDS |
| GCCATTGTTTCCTTTCTCTG+AGG | 0.638901 | 8.3:+43024020 | None:intergenic |
| GTATTAGTTCTGTGTCAACA+TGG | 0.647005 | 8.3:-43023956 | MS.gene25478:CDS |
| AGAGGCCTGCAATGGTGGTG+TGG | 0.651196 | 8.3:+43022909 | None:intergenic |
| GGCGAGTTAGAGGCCTGCAA+TGG | 0.698179 | 8.3:+43022901 | None:intergenic |
| GGCAAGCATAGAATGGAGTG+TGG | 0.714785 | 8.3:-43023244 | MS.gene25478:CDS |
| GAGAGAAAACAGCATCATGG+AGG | 0.723218 | 8.3:+43024237 | None:intergenic |
| TCGCTAAGGAGACACCGAGG+CGG | 0.748620 | 8.3:-43023128 | MS.gene25478:CDS |
| AAGTCGCTAAGGAGACACCG+AGG | 0.807856 | 8.3:-43023131 | MS.gene25478:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCAATTTCTTTCATTTT+TGG | + | chr8.3:43023770-43023789 | None:intergenic | 15.0% |
| !! | AATAACAAAACTTCTAAGTA+TGG | - | chr8.3:43023422-43023441 | MS.gene25478:CDS | 20.0% |
| !! | TTATTGATCAATATTGGATT+TGG | + | chr8.3:43023707-43023726 | None:intergenic | 20.0% |
| !!! | AAATATCAACCTTTTATCAT+TGG | + | chr8.3:43023747-43023766 | None:intergenic | 20.0% |
| !!! | AAATGTTTGAGTTTACAATA+AGG | - | chr8.3:43024011-43024030 | MS.gene25478:CDS | 20.0% |
| !!! | CTTTTGTTATTGATCAATAT+TGG | + | chr8.3:43023713-43023732 | None:intergenic | 20.0% |
| !!! | TTGTTTCTCATAAGTTATAA+AGG | + | chr8.3:43024149-43024168 | None:intergenic | 20.0% |
| ! | AAACAATACTAATTCTCAAG+TGG | - | chr8.3:43024201-43024220 | MS.gene25478:CDS | 25.0% |
| ! | AAGCAATGAAAAGAATAGTT+TGG | - | chr8.3:43023592-43023611 | MS.gene25478:CDS | 25.0% |
| ! | AGACAAATTATGGTTCAAAA+AGG | - | chr8.3:43024239-43024258 | MS.gene25478:CDS | 25.0% |
| ! | ATTCATTGACCAATGATAAA+AGG | - | chr8.3:43023735-43023754 | MS.gene25478:CDS | 25.0% |
| ! | GGAAAGTTTATAGCAAAAAT+TGG | - | chr8.3:43022999-43023018 | MS.gene25478:CDS | 25.0% |
| ! | TCTAGTAAGAAAATTGTTGT+TGG | + | chr8.3:43023873-43023892 | None:intergenic | 25.0% |
| !! | AATACTTCAAGTGATTTTCT+TGG | + | chr8.3:43023677-43023696 | None:intergenic | 25.0% |
| !! | AGAAAATCACTTGAAGTATT+TGG | - | chr8.3:43023677-43023696 | MS.gene25478:CDS | 25.0% |
| !!! | TTGTTTCTGCTACTAATTTT+TGG | + | chr8.3:43024181-43024200 | None:intergenic | 25.0% |
| AATTATGGTTCAAAAAGGCA+TGG | - | chr8.3:43024244-43024263 | MS.gene25478:CDS | 30.0% | |
| CCATACTTGAATATGAAAGA+AGG | - | chr8.3:43022978-43022997 | MS.gene25478:CDS | 30.0% | |
| CCTTCTTTCATATTCAAGTA+TGG | + | chr8.3:43022981-43023000 | None:intergenic | 30.0% | |
| GCTGAAAAATACTTCAATAG+AGG | - | chr8.3:43023113-43023132 | MS.gene25478:CDS | 30.0% | |
| TCAAAAGCAAGAGAAGTTAA+GGG | - | chr8.3:43023562-43023581 | MS.gene25478:CDS | 30.0% | |
| TGAAAGTTTGCATTTGATGA+AGG | + | chr8.3:43022908-43022927 | None:intergenic | 30.0% | |
| TGATAAAGGGATTGATTGTT+TGG | + | chr8.3:43023034-43023053 | None:intergenic | 30.0% | |
| TTACAATAAGGAGTCCAATA+AGG | - | chr8.3:43024023-43024042 | MS.gene25478:CDS | 30.0% | |
| TTCAAAAGCAAGAGAAGTTA+AGG | - | chr8.3:43023561-43023580 | MS.gene25478:CDS | 30.0% | |
| ! | AGTAAGAAAATTGTTGTTGG+AGG | + | chr8.3:43023870-43023889 | None:intergenic | 30.0% |
| ! | GTAAGAAAATTGTTGTTGGA+GGG | + | chr8.3:43023869-43023888 | None:intergenic | 30.0% |
| ! | TAAAACTGATTTCACTTGCA+TGG | + | chr8.3:43023403-43023422 | None:intergenic | 30.0% |
| !! | CCAAAAAAAGTGTTCAATCT+TGG | - | chr8.3:43023467-43023486 | MS.gene25478:CDS | 30.0% |
| !! | GAGTTTCTATGGTTGATAAA+GGG | + | chr8.3:43023047-43023066 | None:intergenic | 30.0% |
| !! | TATAGTAACTTTGAAGCATG+TGG | + | chr8.3:43024316-43024335 | None:intergenic | 30.0% |
| !!! | CCAAGATTGAACACTTTTTT+TGG | + | chr8.3:43023470-43023489 | None:intergenic | 30.0% |
| AATGGCAAAGAAAAAGAGCA+TGG | - | chr8.3:43023308-43023327 | MS.gene25478:CDS | 35.0% | |
| AGTGGAGTGAGAAATTCTAT+AGG | - | chr8.3:43023284-43023303 | MS.gene25478:CDS | 35.0% | |
| AGTTTGCATTTGATGAAGGT+TGG | + | chr8.3:43022904-43022923 | None:intergenic | 35.0% | |
| ATACTAATTCTCAAGTGGCA+AGG | - | chr8.3:43024206-43024225 | MS.gene25478:CDS | 35.0% | |
| ATTGAAACCAAAAGTCGCTA+AGG | - | chr8.3:43024051-43024070 | MS.gene25478:CDS | 35.0% | |
| CAAAATGCACTCTTAAAGAG+TGG | - | chr8.3:43023266-43023285 | MS.gene25478:CDS | 35.0% | |
| GTGAGAAATTCTATAGGGAA+TGG | - | chr8.3:43023290-43023309 | MS.gene25478:CDS | 35.0% | |
| GTGGAGTGAGAAATTCTATA+GGG | - | chr8.3:43023285-43023304 | MS.gene25478:CDS | 35.0% | |
| GTTGACACAGAACTAATACT+TGG | + | chr8.3:43023236-43023255 | None:intergenic | 35.0% | |
| TTGAGTAAGATTTCTGAGCT+AGG | + | chr8.3:43023527-43023546 | None:intergenic | 35.0% | |
| TTTCCAGGAGAGACAAATTA+TGG | - | chr8.3:43024229-43024248 | MS.gene25478:CDS | 35.0% | |
| ! | GCAGAAGAAATTGGAGTATT+TGG | - | chr8.3:43023089-43023108 | MS.gene25478:CDS | 35.0% |
| ! | GGTGTCTTTTCATCATCTAA+TGG | + | chr8.3:43023656-43023675 | None:intergenic | 35.0% |
| ! | TTTGAGATTGAGAGTCTCAA+AGG | - | chr8.3:43023839-43023858 | MS.gene25478:CDS | 35.0% |
| !! | AGAAAGTACCAAGTTGAGTA+TGG | - | chr8.3:43023206-43023225 | MS.gene25478:CDS | 35.0% |
| !! | CACTCTTTAAGAGTGCATTT+TGG | + | chr8.3:43023268-43023287 | None:intergenic | 35.0% |
| !! | GGAGTTTCTATGGTTGATAA+AGG | + | chr8.3:43023048-43023067 | None:intergenic | 35.0% |
| !! | GTATTAGTTCTGTGTCAACA+TGG | - | chr8.3:43023237-43023256 | MS.gene25478:CDS | 35.0% |
| !!! | CATTTGATGAAGGTTGGTTT+TGG | + | chr8.3:43022898-43022917 | None:intergenic | 35.0% |
| !!! | TTAGCGACTTTTGGTTTCAA+TGG | + | chr8.3:43024052-43024071 | None:intergenic | 35.0% |
| AAGCAAGAGAAGTTAAGGGT+AGG | - | chr8.3:43023566-43023585 | MS.gene25478:CDS | 40.0% | |
| AGGTACTTTGTAGAAGGTCT+TGG | + | chr8.3:43023152-43023171 | None:intergenic | 40.0% | |
| ATGGAGAGAAAACAGCATCA+TGG | + | chr8.3:43022962-43022981 | None:intergenic | 40.0% | |
| CACAAAGCTGTTAGAGTTTC+TGG | - | chr8.3:43024118-43024137 | MS.gene25478:CDS | 40.0% | |
| CAGAAACTCTAACAGCTTTG+TGG | + | chr8.3:43024120-43024139 | None:intergenic | 40.0% | |
| GGTTTCAATGGTGTCCTTAT+TGG | + | chr8.3:43024040-43024059 | None:intergenic | 40.0% | |
| GTGGAAAAGGCAGAAGAAAT+TGG | - | chr8.3:43023080-43023099 | MS.gene25478:CDS | 40.0% | |
| TCCTCAGAGAAAGGAAACAA+TGG | - | chr8.3:43023172-43023191 | MS.gene25478:CDS | 40.0% | |
| TCTAAGTATGGTGCAGTTCA+AGG | - | chr8.3:43023434-43023453 | MS.gene25478:CDS | 40.0% | |
| TTGGAGTTCCATACTCAACT+TGG | + | chr8.3:43023217-43023236 | None:intergenic | 40.0% | |
| ! | AAAAGGCATGGACAACAACA+TGG | - | chr8.3:43024256-43024275 | MS.gene25478:CDS | 40.0% |
| ! | AAAGTACCTTCCTCAGAGAA+AGG | - | chr8.3:43023163-43023182 | MS.gene25478:CDS | 40.0% |
| ! | CCTTTTCCACTTGATGAAGA+GGG | + | chr8.3:43023070-43023089 | None:intergenic | 40.0% |
| ! | CTTTTCCACTTGATGAAGAG+GGG | + | chr8.3:43023069-43023088 | None:intergenic | 40.0% |
| ! | GAACCATAATTTGTCTCTCC+TGG | + | chr8.3:43024235-43024254 | None:intergenic | 40.0% |
| ! | TTGTTTCCTTTCTCTGAGGA+AGG | + | chr8.3:43023172-43023191 | None:intergenic | 40.0% |
| !! | TGAGGAAGGTACTTTGTAGA+AGG | + | chr8.3:43023158-43023177 | None:intergenic | 40.0% |
| !!! | ATGAAGGTTGGTTTTGGTAG+TGG | + | chr8.3:43022892-43022911 | None:intergenic | 40.0% |
| AAACTCCCCTCTTCATCAAG+TGG | - | chr8.3:43023061-43023080 | MS.gene25478:CDS | 45.0% | |
| AGAAAACAGCATCATGGAGG+TGG | + | chr8.3:43022956-43022975 | None:intergenic | 45.0% | |
| CATTCTATGCTTGCCTCACT+CGG | + | chr8.3:43023944-43023963 | None:intergenic | 45.0% | |
| CCCTCTTCATCAAGTGGAAA+AGG | - | chr8.3:43023067-43023086 | MS.gene25478:CDS | 45.0% | |
| GAGAGAAAACAGCATCATGG+AGG | + | chr8.3:43022959-43022978 | None:intergenic | 45.0% | |
| GATGAAGAGGGGAGTTTCTA+TGG | + | chr8.3:43023058-43023077 | None:intergenic | 45.0% | |
| GCCATTGTTTCCTTTCTCTG+AGG | + | chr8.3:43023176-43023195 | None:intergenic | 45.0% | |
| TCACTCGGCGCATAACAATT+CGG | + | chr8.3:43023929-43023948 | None:intergenic | 45.0% | |
| TTATACCACACCACCATTGC+AGG | - | chr8.3:43024279-43024298 | MS.gene25478:CDS | 45.0% | |
| TTGCATCCCAATAACATGCC+AGG | + | chr8.3:43024094-43024113 | None:intergenic | 45.0% | |
| ! | GCCTTTTCCACTTGATGAAG+AGG | + | chr8.3:43023071-43023090 | None:intergenic | 45.0% |
| CACTCGGCGCATAACAATTC+GGG | + | chr8.3:43023928-43023947 | None:intergenic | 50.0% | |
| CGAGTGAGGCAAGCATAGAA+TGG | - | chr8.3:43023942-43023961 | MS.gene25478:CDS | 50.0% | |
| GAATTGTTATGCGCCGAGTG+AGG | - | chr8.3:43023928-43023947 | MS.gene25478:CDS | 50.0% | |
| GCGCATAACAATTCGGGCTA+AGG | + | chr8.3:43023922-43023941 | None:intergenic | 50.0% | |
| GGCAAGCATAGAATGGAGTG+TGG | - | chr8.3:43023949-43023968 | MS.gene25478:CDS | 50.0% | |
| TCTCAAGTGGCAAGGTTTCC+AGG | - | chr8.3:43024214-43024233 | MS.gene25478:CDS | 50.0% | |
| TGAAGCATGTGGCGAGTTAG+AGG | + | chr8.3:43024305-43024324 | None:intergenic | 50.0% | |
| ! | GGTGTCTCCTTAGCGACTTT+TGG | + | chr8.3:43024061-43024080 | None:intergenic | 50.0% |
| AAGTCGCTAAGGAGACACCG+AGG | - | chr8.3:43024062-43024081 | MS.gene25478:CDS | 55.0% | |
| GAGTTAGAGGCCTGCAATGG+TGG | + | chr8.3:43024292-43024311 | None:intergenic | 55.0% | |
| CGGCGGCCTGGCATGTTATT+GGG | - | chr8.3:43024085-43024104 | MS.gene25478:CDS | 60.0% | |
| GGCGAGTTAGAGGCCTGCAA+TGG | + | chr8.3:43024295-43024314 | None:intergenic | 60.0% | |
| TCGCTAAGGAGACACCGAGG+CGG | - | chr8.3:43024065-43024084 | MS.gene25478:CDS | 60.0% | |
| ! | AGAGGCCTGCAATGGTGGTG+TGG | + | chr8.3:43024287-43024306 | None:intergenic | 60.0% |
| CTAAGGAGACACCGAGGCGG+CGG | - | chr8.3:43024068-43024087 | MS.gene25478:CDS | 65.0% | |
| GCGGCGGCCTGGCATGTTAT+TGG | - | chr8.3:43024084-43024103 | MS.gene25478:CDS | 65.0% | |
| AACATGCCAGGCCGCCGCCT+CGG | + | chr8.3:43024082-43024101 | None:intergenic | 70.0% | |
| ! | GAGACACCGAGGCGGCGGCC+TGG | - | chr8.3:43024073-43024092 | MS.gene25478:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 43022873 | 43024342 | 43022873 | ID=MS.gene25478 |
| chr8.3 | mRNA | 43022873 | 43024342 | 43022873 | ID=MS.gene25478.t1;Parent=MS.gene25478 |
| chr8.3 | exon | 43022873 | 43024342 | 43022873 | ID=MS.gene25478.t1.exon1;Parent=MS.gene25478.t1 |
| chr8.3 | CDS | 43022873 | 43024342 | 43022873 | ID=cds.MS.gene25478.t1;Parent=MS.gene25478.t1 |
| Gene Sequence |
| Protein sequence |
