Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27301.t1 | KEH40159.1 | 95.4 | 280 | 10 | 1 | 1 | 280 | 90 | 366 | 6.20E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27301.t1 | Q8LEZ4 | 56.6 | 279 | 100 | 5 | 1 | 274 | 108 | 370 | 4.0e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27301.t1 | A0A072VDQ7 | 95.4 | 280 | 10 | 1 | 1 | 280 | 90 | 366 | 4.4e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene27301 | 0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene049178 | MS.gene27301 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene27301 | 0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene27301 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene27301 | 0.853586 | 2.17E-61 | -1.69E-46 |
| MS.gene050084 | MS.gene27301 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene27301 | 0.832201 | 1.08E-55 | -1.69E-46 |
| MS.gene050551 | MS.gene27301 | 0.83195 | 1.25E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene27301 | 0.829847 | 4.09E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene27301 | 0.831878 | 1.30E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene27301 | 0.860703 | 1.72E-63 | -1.69E-46 |
| MS.gene051003 | MS.gene27301 | 0.80322 | 3.87E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene27301 | 0.870943 | 9.95E-67 | -1.69E-46 |
| MS.gene051233 | MS.gene27301 | 0.805721 | 1.16E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene27301 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene27301 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene27301 | 0.817322 | 3.50E-52 | -1.69E-46 |
| MS.gene051381 | MS.gene27301 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene27301 | 0.815813 | 7.63E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene27301 | 0.80284 | 4.64E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene27301 | 0.837228 | 5.88E-57 | -1.69E-46 |
| MS.gene052242 | MS.gene27301 | -0.803852 | 2.86E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene27301 | 0.821321 | 4.30E-53 | -1.69E-46 |
| MS.gene052335 | MS.gene27301 | 0.821746 | 3.43E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene27301 | 0.811746 | 6.00E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene27301 | 0.865516 | 5.58E-65 | -1.69E-46 |
| MS.gene052516 | MS.gene27301 | 0.830134 | 3.48E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene27301 | 0.840021 | 1.12E-57 | -1.69E-46 |
| MS.gene052665 | MS.gene27301 | 0.837951 | 3.84E-57 | -1.69E-46 |
| MS.gene052732 | MS.gene27301 | 0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene27301 | 0.804414 | 2.19E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene27301 | 0.850311 | 1.84E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene27301 | 0.815148 | 1.07E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene27301 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene27301 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene27301 | 0.806352 | 8.58E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene27301 | 0.809582 | 1.76E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene27301 | 0.814458 | 1.53E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene27301 | 0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene27301 | 0.806188 | 9.29E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene27301 | 0.822614 | 2.16E-53 | -1.69E-46 |
| MS.gene055311 | MS.gene27301 | 0.814402 | 1.57E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene27301 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene055314 | MS.gene27301 | 0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene27301 | 0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene27301 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene27301 | 0.867377 | 1.43E-65 | -1.69E-46 |
| MS.gene055512 | MS.gene27301 | 0.818614 | 1.79E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene27301 | 0.833537 | 5.04E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene27301 | -0.835186 | 1.94E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene27301 | 0.800167 | 1.64E-48 | -1.69E-46 |
| MS.gene056043 | MS.gene27301 | -0.846108 | 2.67E-59 | -1.69E-46 |
| MS.gene056097 | MS.gene27301 | 0.801247 | 9.85E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene27301 | 0.856741 | 2.62E-62 | -1.69E-46 |
| MS.gene056308 | MS.gene27301 | 0.815736 | 7.93E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene27301 | 0.820143 | 8.02E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene27301 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene27301 | 0.831826 | 1.34E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene27301 | 0.810117 | 1.35E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene27301 | 0.808716 | 2.70E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene27301 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene27301 | 0.813346 | 2.68E-51 | -1.69E-46 |
| MS.gene057446 | MS.gene27301 | 0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene27301 | 0.803601 | 3.23E-49 | -1.69E-46 |
| MS.gene058126 | MS.gene27301 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene27301 | 0.834243 | 3.35E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene27301 | 0.83972 | 1.34E-57 | -1.69E-46 |
| MS.gene058668 | MS.gene27301 | 0.800809 | 1.21E-48 | -1.69E-46 |
| MS.gene058758 | MS.gene27301 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene27301 | 0.815948 | 7.12E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene27301 | 0.807097 | 5.97E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene27301 | 0.803126 | 4.04E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene27301 | 0.848886 | 4.61E-60 | -1.69E-46 |
| MS.gene059331 | MS.gene27301 | 0.808031 | 3.78E-50 | -1.69E-46 |
| MS.gene059335 | MS.gene27301 | 0.819347 | 1.22E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene27301 | 0.823619 | 1.26E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene27301 | 0.832396 | 9.68E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene27301 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene27301 | 0.826579 | 2.51E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene27301 | 0.821199 | 4.58E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene27301 | 0.811383 | 7.19E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene27301 | 0.82418 | 9.28E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene27301 | 0.873745 | 1.16E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene27301 | 0.811327 | 7.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27301.t1 | MTR_1g022355 | 95.357 | 280 | 10 | 1 | 1 | 280 | 90 | 366 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27301.t1 | AT1G19520 | 56.631 | 279 | 100 | 5 | 1 | 274 | 108 | 370 | 2.72e-87 | 265 |
| MS.gene27301.t1 | AT1G19520 | 56.429 | 280 | 101 | 5 | 1 | 275 | 108 | 371 | 2.37e-84 | 267 |
Find 74 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGTTCAAGATTTA+TGG | 0.133676 | 1.2:-2222537 | MS.gene27301:CDS |
| TCAGCCACTTGTTCCCATTT+AGG | 0.207802 | 1.2:+2222498 | None:intergenic |
| TTGATCTATCGGATCCTAAA+TGG | 0.216797 | 1.2:-2222512 | MS.gene27301:CDS |
| ATGAGGCGGGAGAAGTTATT+TGG | 0.238365 | 1.2:-2222467 | MS.gene27301:CDS |
| TTAGAGAGCTTAGGTTTAAA+TGG | 0.238681 | 1.2:-2222743 | MS.gene27301:CDS |
| GGAGGTTAGTAATAAGGTTT+TGG | 0.281718 | 1.2:-2222877 | MS.gene27301:CDS |
| TGTTTGCATTTCCCGGTTAT+CGG | 0.314823 | 1.2:+2222429 | None:intergenic |
| GGTAACTTGTTTGCATTTCC+CGG | 0.333463 | 1.2:+2222422 | None:intergenic |
| GAATTATCCTTTATACTTCA+AGG | 0.334354 | 1.2:-2222271 | MS.gene27301:CDS |
| AAGGAGGCGAAGCCGATAAC+CGG | 0.340946 | 1.2:-2222441 | MS.gene27301:CDS |
| TGTGTGGGAGGTTAGTAATA+AGG | 0.359950 | 1.2:-2222883 | MS.gene27301:CDS |
| TAGAGCTTCTACAGCCTACT+AGG | 0.360591 | 1.2:-2222332 | MS.gene27301:CDS |
| TGAAAGGGTTGTTTCAGAAA+TGG | 0.373951 | 1.2:-2222994 | MS.gene27301:CDS |
| TAAATGGGCACGTGAGAAAA+TGG | 0.380143 | 1.2:-2222727 | MS.gene27301:CDS |
| TGCATCTTCGCGATTTGATT+CGG | 0.380839 | 1.2:-2222934 | MS.gene27301:CDS |
| ATGGAAAAGGGTAGTGGTAG+TGG | 0.392895 | 1.2:-2222975 | MS.gene27301:CDS |
| ACAGTTACCTTGAAGTATAA+AGG | 0.399658 | 1.2:+2222264 | None:intergenic |
| TGTAGATTTGCTGGTGAAGT+TGG | 0.408581 | 1.2:-2222783 | MS.gene27301:CDS |
| GATGCTGGTGTTCGTGTTGA+TGG | 0.410669 | 1.2:-2222606 | MS.gene27301:CDS |
| AAATTAAGTTCAAGATTTAT+GGG | 0.422169 | 1.2:-2222536 | MS.gene27301:CDS |
| CGAGAAAATTCTGTCGTTGA+AGG | 0.433246 | 1.2:-2222400 | MS.gene27301:CDS |
| AAAGAGATGTGTAGATTTGC+TGG | 0.447104 | 1.2:-2222792 | MS.gene27301:CDS |
| GGTTGTTTCAGAAATGGAAA+AGG | 0.448209 | 1.2:-2222988 | MS.gene27301:CDS |
| GTTGACCCTGGTAGCTGAAT+GGG | 0.449689 | 1.2:-2222355 | MS.gene27301:CDS |
| ATGAGGATTTGGAGAAAATG+AGG | 0.450985 | 1.2:-2222689 | MS.gene27301:CDS |
| TAGAGAGCTTAGGTTTAAAT+GGG | 0.451572 | 1.2:-2222742 | MS.gene27301:CDS |
| TGATCTATCGGATCCTAAAT+GGG | 0.452985 | 1.2:-2222511 | MS.gene27301:CDS |
| GATTTATGGGCTTGATCTAT+CGG | 0.456068 | 1.2:-2222523 | MS.gene27301:CDS |
| TGGAAAAGGGTAGTGGTAGT+GGG | 0.463563 | 1.2:-2222974 | MS.gene27301:CDS |
| GTTGAGGAGAAGAAGGTTGT+TGG | 0.471339 | 1.2:-2222579 | MS.gene27301:CDS |
| TTGATCCAATCCACCCTAGT+AGG | 0.474961 | 1.2:+2222318 | None:intergenic |
| GCTCTACCCATTCAGCTACC+AGG | 0.475118 | 1.2:+2222349 | None:intergenic |
| TTGGTCTTCCTAAGAGGAAA+GGG | 0.483400 | 1.2:-2222560 | MS.gene27301:CDS |
| GCTGGTGAAGTTGGGATTCG+AGG | 0.483854 | 1.2:-2222774 | MS.gene27301:CDS |
| GTTGTTTCAGAAATGGAAAA+GGG | 0.487089 | 1.2:-2222987 | MS.gene27301:CDS |
| TGCTGCTTGTTATTGTTGAA+AGG | 0.487258 | 1.2:-2223010 | MS.gene27301:CDS |
| GAAAATGTTGTTGTTGATGC+TGG | 0.487848 | 1.2:-2222621 | MS.gene27301:CDS |
| AGGAAGAAGGAGAAAATGAA+AGG | 0.488535 | 1.2:-2222837 | MS.gene27301:CDS |
| AACAAGCAGCATTGCATCTA+CGG | 0.491489 | 1.2:+2223022 | None:intergenic |
| ATTGGATCAATTTGCTTGAA+AGG | 0.495330 | 1.2:-2222305 | MS.gene27301:CDS |
| TACAGCCTACTAGGGTGGAT+TGG | 0.497105 | 1.2:-2222323 | MS.gene27301:CDS |
| GTTATCGGCTTCGCCTCCTT+CGG | 0.498408 | 1.2:+2222444 | None:intergenic |
| GTAGATTTGCTGGTGAAGTT+GGG | 0.499570 | 1.2:-2222782 | MS.gene27301:CDS |
| GCGATTTGCTTAGAGAGCTT+AGG | 0.500284 | 1.2:-2222752 | MS.gene27301:CDS |
| TGTTGACCCTGGTAGCTGAA+TGG | 0.506521 | 1.2:-2222356 | MS.gene27301:CDS |
| GCTGCTTGTTATTGTTGAAA+GGG | 0.513685 | 1.2:-2223009 | MS.gene27301:CDS |
| GGAAGAAGGAGAAAATGAAA+GGG | 0.516139 | 1.2:-2222836 | MS.gene27301:CDS |
| TATGAATAAAGAGAGGAAGA+AGG | 0.517752 | 1.2:-2222850 | MS.gene27301:CDS |
| GGAAAAGGGTAGTGGTAGTG+GGG | 0.518104 | 1.2:-2222973 | MS.gene27301:CDS |
| AGGTTGTTGGTCTTCCTAAG+AGG | 0.522381 | 1.2:-2222566 | MS.gene27301:CDS |
| GAAAAGGGTAGTGGTAGTGG+GGG | 0.524024 | 1.2:-2222972 | MS.gene27301:CDS |
| TGGTAATGTTGAGGAGAAGA+AGG | 0.529708 | 1.2:-2222586 | MS.gene27301:CDS |
| AATTCTGTCGTTGAAGGAGA+AGG | 0.546483 | 1.2:-2222394 | MS.gene27301:CDS |
| GTTGGTCTTCCTAAGAGGAA+AGG | 0.559694 | 1.2:-2222561 | MS.gene27301:CDS |
| TCAGAAATGGAAAAGGGTAG+TGG | 0.562055 | 1.2:-2222981 | MS.gene27301:CDS |
| AGGAGGCGAAGCCGATAACC+GGG | 0.567405 | 1.2:-2222440 | MS.gene27301:CDS |
| AGAAGTTATTTGGCCGAAGG+AGG | 0.576981 | 1.2:-2222457 | MS.gene27301:CDS |
| GGCTGATAAGATTCATGAGG+CGG | 0.580784 | 1.2:-2222481 | MS.gene27301:CDS |
| GGGAGAAGTTATTTGGCCGA+AGG | 0.586632 | 1.2:-2222460 | MS.gene27301:CDS |
| GCTGATAAGATTCATGAGGC+GGG | 0.589093 | 1.2:-2222480 | MS.gene27301:CDS |
| TTTATGGAGGACTGTGTGGG+AGG | 0.601402 | 1.2:-2222895 | MS.gene27301:CDS |
| ATCTTCGCGATTTGATTCGG+TGG | 0.603612 | 1.2:-2222931 | MS.gene27301:CDS |
| AGGATTTATGGAGGACTGTG+TGG | 0.605077 | 1.2:-2222899 | MS.gene27301:CDS |
| CTGTCGTTGAAGGAGAAGGA+TGG | 0.608593 | 1.2:-2222390 | MS.gene27301:CDS |
| GGATCCTAAATGGGAACAAG+TGG | 0.618929 | 1.2:-2222502 | MS.gene27301:CDS |
| CTCTACCCATTCAGCTACCA+GGG | 0.620249 | 1.2:+2222350 | None:intergenic |
| GCTTCTACAGCCTACTAGGG+TGG | 0.622270 | 1.2:-2222328 | MS.gene27301:CDS |
| TCGTGTTGATGGTAATGTTG+AGG | 0.627189 | 1.2:-2222595 | MS.gene27301:CDS |
| AGAGCTTCTACAGCCTACTA+GGG | 0.634855 | 1.2:-2222331 | MS.gene27301:CDS |
| GGATTTATGGAGGACTGTGT+GGG | 0.636168 | 1.2:-2222898 | MS.gene27301:CDS |
| TGGTTGATATGAATAAAGAG+AGG | 0.637788 | 1.2:-2222857 | MS.gene27301:CDS |
| AGATGATAGTTTGTTGACCC+TGG | 0.658807 | 1.2:-2222367 | MS.gene27301:CDS |
| AGTGGCTGATAAGATTCATG+AGG | 0.693084 | 1.2:-2222484 | MS.gene27301:CDS |
| ATGGGCACGTGAGAAAATGG+AGG | 0.695770 | 1.2:-2222724 | MS.gene27301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAGTTCAAGATTTA+TGG | - | chr1.2:2222779-2222798 | MS.gene27301:CDS | 15.0% |
| !! | AAATTAAGTTCAAGATTTAT+GGG | - | chr1.2:2222780-2222799 | MS.gene27301:CDS | 15.0% |
| ! | GAATTATCCTTTATACTTCA+AGG | - | chr1.2:2223045-2223064 | MS.gene27301:CDS | 25.0% |
| !! | ATCAACAACAACATTTTCTT+CGG | + | chr1.2:2222693-2222712 | None:intergenic | 25.0% |
| ACAGTTACCTTGAAGTATAA+AGG | + | chr1.2:2223055-2223074 | None:intergenic | 30.0% | |
| TAGAGAGCTTAGGTTTAAAT+GGG | - | chr1.2:2222574-2222593 | MS.gene27301:CDS | 30.0% | |
| TATGAATAAAGAGAGGAAGA+AGG | - | chr1.2:2222466-2222485 | MS.gene27301:CDS | 30.0% | |
| TTAGAGAGCTTAGGTTTAAA+TGG | - | chr1.2:2222573-2222592 | MS.gene27301:CDS | 30.0% | |
| ! | ATTGGATCAATTTGCTTGAA+AGG | - | chr1.2:2223011-2223030 | MS.gene27301:CDS | 30.0% |
| ! | GTTGTTTCAGAAATGGAAAA+GGG | - | chr1.2:2222329-2222348 | MS.gene27301:CDS | 30.0% |
| ! | TACGGTACTTTTATCACATT+CGG | + | chr1.2:2222279-2222298 | None:intergenic | 30.0% |
| ! | TGGTTGATATGAATAAAGAG+AGG | - | chr1.2:2222459-2222478 | MS.gene27301:CDS | 30.0% |
| ! | TTAATTTTCCCTTTCCTCTT+AGG | + | chr1.2:2222767-2222786 | None:intergenic | 30.0% |
| !! | ACATGAGTTTTATGAGGATT+TGG | - | chr1.2:2222616-2222635 | MS.gene27301:CDS | 30.0% |
| !! | ATTTTAGTGAGGATTTATGG+AGG | - | chr1.2:2222408-2222427 | MS.gene27301:CDS | 30.0% |
| !! | TGGATTTTAGTGAGGATTTA+TGG | - | chr1.2:2222405-2222424 | MS.gene27301:CDS | 30.0% |
| AAAGAGATGTGTAGATTTGC+TGG | - | chr1.2:2222524-2222543 | MS.gene27301:CDS | 35.0% | |
| AGGAAGAAGGAGAAAATGAA+AGG | - | chr1.2:2222479-2222498 | MS.gene27301:CDS | 35.0% | |
| ATGAGGATTTGGAGAAAATG+AGG | - | chr1.2:2222627-2222646 | MS.gene27301:CDS | 35.0% | |
| GATTTATGGGCTTGATCTAT+CGG | - | chr1.2:2222793-2222812 | MS.gene27301:CDS | 35.0% | |
| GGAAGAAGGAGAAAATGAAA+GGG | - | chr1.2:2222480-2222499 | MS.gene27301:CDS | 35.0% | |
| TGATCTATCGGATCCTAAAT+GGG | - | chr1.2:2222805-2222824 | MS.gene27301:CDS | 35.0% | |
| TTGATCTATCGGATCCTAAA+TGG | - | chr1.2:2222804-2222823 | MS.gene27301:CDS | 35.0% | |
| ! | ACGGTACTTTTATCACATTC+GGG | + | chr1.2:2222278-2222297 | None:intergenic | 35.0% |
| ! | CTTCAACGACAGAATTTTCT+CGG | + | chr1.2:2222918-2222937 | None:intergenic | 35.0% |
| ! | GAAAATGTTGTTGTTGATGC+TGG | - | chr1.2:2222695-2222714 | MS.gene27301:CDS | 35.0% |
| ! | GGAGGTTAGTAATAAGGTTT+TGG | - | chr1.2:2222439-2222458 | MS.gene27301:CDS | 35.0% |
| ! | GGTTGTTTCAGAAATGGAAA+AGG | - | chr1.2:2222328-2222347 | MS.gene27301:CDS | 35.0% |
| ! | TGAAAGGGTTGTTTCAGAAA+TGG | - | chr1.2:2222322-2222341 | MS.gene27301:CDS | 35.0% |
| !! | GCTGCTTGTTATTGTTGAAA+GGG | - | chr1.2:2222307-2222326 | MS.gene27301:CDS | 35.0% |
| !! | TGCTGCTTGTTATTGTTGAA+AGG | - | chr1.2:2222306-2222325 | MS.gene27301:CDS | 35.0% |
| AACAAGCAGCATTGCATCTA+CGG | + | chr1.2:2222297-2222316 | None:intergenic | 40.0% | |
| AATTCTGTCGTTGAAGGAGA+AGG | - | chr1.2:2222922-2222941 | MS.gene27301:CDS | 40.0% | |
| AGTGGCTGATAAGATTCATG+AGG | - | chr1.2:2222832-2222851 | MS.gene27301:CDS | 40.0% | |
| CGAGAAAATTCTGTCGTTGA+AGG | - | chr1.2:2222916-2222935 | MS.gene27301:CDS | 40.0% | |
| TAAATGGGCACGTGAGAAAA+TGG | - | chr1.2:2222589-2222608 | MS.gene27301:CDS | 40.0% | |
| TCAGAAATGGAAAAGGGTAG+TGG | - | chr1.2:2222335-2222354 | MS.gene27301:CDS | 40.0% | |
| TGCATCTTCGCGATTTGATT+CGG | - | chr1.2:2222382-2222401 | MS.gene27301:CDS | 40.0% | |
| TGTGTGGGAGGTTAGTAATA+AGG | - | chr1.2:2222433-2222452 | MS.gene27301:CDS | 40.0% | |
| TGTTTGCATTTCCCGGTTAT+CGG | + | chr1.2:2222890-2222909 | None:intergenic | 40.0% | |
| ! | CGGTACTTTTATCACATTCG+GGG | + | chr1.2:2222277-2222296 | None:intergenic | 40.0% |
| ! | TGGTAATGTTGAGGAGAAGA+AGG | - | chr1.2:2222730-2222749 | MS.gene27301:CDS | 40.0% |
| ! | TTGGTCTTCCTAAGAGGAAA+GGG | - | chr1.2:2222756-2222775 | MS.gene27301:CDS | 40.0% |
| !! | AGATGATAGTTTGTTGACCC+TGG | - | chr1.2:2222949-2222968 | MS.gene27301:CDS | 40.0% |
| !! | GGAGGAACATGAGTTTTATG+AGG | - | chr1.2:2222610-2222629 | MS.gene27301:CDS | 40.0% |
| !! | GGTAACTTGTTTGCATTTCC+CGG | + | chr1.2:2222897-2222916 | None:intergenic | 40.0% |
| !! | GTAGATTTGCTGGTGAAGTT+GGG | - | chr1.2:2222534-2222553 | MS.gene27301:CDS | 40.0% |
| !! | TCGTGTTGATGGTAATGTTG+AGG | - | chr1.2:2222721-2222740 | MS.gene27301:CDS | 40.0% |
| !! | TGTAGATTTGCTGGTGAAGT+TGG | - | chr1.2:2222533-2222552 | MS.gene27301:CDS | 40.0% |
| !!! | TGATTCGGTGGATTTTAGTG+AGG | - | chr1.2:2222397-2222416 | MS.gene27301:CDS | 40.0% |
| AGAAGTTATTTGGCCGAAGG+AGG | - | chr1.2:2222859-2222878 | MS.gene27301:CDS | 45.0% | |
| AGAGCTTCTACAGCCTACTA+GGG | - | chr1.2:2222985-2223004 | MS.gene27301:CDS | 45.0% | |
| AGGATTTATGGAGGACTGTG+TGG | - | chr1.2:2222417-2222436 | MS.gene27301:CDS | 45.0% | |
| ATGAGGCGGGAGAAGTTATT+TGG | - | chr1.2:2222849-2222868 | MS.gene27301:CDS | 45.0% | |
| GCTGATAAGATTCATGAGGC+GGG | - | chr1.2:2222836-2222855 | MS.gene27301:CDS | 45.0% | |
| GGATCCTAAATGGGAACAAG+TGG | - | chr1.2:2222814-2222833 | MS.gene27301:CDS | 45.0% | |
| GGATTTATGGAGGACTGTGT+GGG | - | chr1.2:2222418-2222437 | MS.gene27301:CDS | 45.0% | |
| GGCTGATAAGATTCATGAGG+CGG | - | chr1.2:2222835-2222854 | MS.gene27301:CDS | 45.0% | |
| GTTGAGGAGAAGAAGGTTGT+TGG | - | chr1.2:2222737-2222756 | MS.gene27301:CDS | 45.0% | |
| TAGAGCTTCTACAGCCTACT+AGG | - | chr1.2:2222984-2223003 | MS.gene27301:CDS | 45.0% | |
| TCAGCCACTTGTTCCCATTT+AGG | + | chr1.2:2222821-2222840 | None:intergenic | 45.0% | |
| TTGATCCAATCCACCCTAGT+AGG | + | chr1.2:2223001-2223020 | None:intergenic | 45.0% | |
| ! | ATGGAAAAGGGTAGTGGTAG+TGG | - | chr1.2:2222341-2222360 | MS.gene27301:CDS | 45.0% |
| ! | GCGATTTGCTTAGAGAGCTT+AGG | - | chr1.2:2222564-2222583 | MS.gene27301:CDS | 45.0% |
| ! | TGGAAAAGGGTAGTGGTAGT+GGG | - | chr1.2:2222342-2222361 | MS.gene27301:CDS | 45.0% |
| !! | AGGTTGTTGGTCTTCCTAAG+AGG | - | chr1.2:2222750-2222769 | MS.gene27301:CDS | 45.0% |
| !! | ATCTTCGCGATTTGATTCGG+TGG | - | chr1.2:2222385-2222404 | MS.gene27301:CDS | 45.0% |
| !! | GTTGGTCTTCCTAAGAGGAA+AGG | - | chr1.2:2222755-2222774 | MS.gene27301:CDS | 45.0% |
| ATGGGCACGTGAGAAAATGG+AGG | - | chr1.2:2222592-2222611 | MS.gene27301:CDS | 50.0% | |
| CTCTACCCATTCAGCTACCA+GGG | + | chr1.2:2222969-2222988 | None:intergenic | 50.0% | |
| CTGTCGTTGAAGGAGAAGGA+TGG | - | chr1.2:2222926-2222945 | MS.gene27301:CDS | 50.0% | |
| GATGCTGGTGTTCGTGTTGA+TGG | - | chr1.2:2222710-2222729 | MS.gene27301:CDS | 50.0% | |
| GGGAGAAGTTATTTGGCCGA+AGG | - | chr1.2:2222856-2222875 | MS.gene27301:CDS | 50.0% | |
| GTTGACCCTGGTAGCTGAAT+GGG | - | chr1.2:2222961-2222980 | MS.gene27301:CDS | 50.0% | |
| TACAGCCTACTAGGGTGGAT+TGG | - | chr1.2:2222993-2223012 | MS.gene27301:CDS | 50.0% | |
| TGTTGACCCTGGTAGCTGAA+TGG | - | chr1.2:2222960-2222979 | MS.gene27301:CDS | 50.0% | |
| TTTATGGAGGACTGTGTGGG+AGG | - | chr1.2:2222421-2222440 | MS.gene27301:CDS | 50.0% | |
| ! | GGAAAAGGGTAGTGGTAGTG+GGG | - | chr1.2:2222343-2222362 | MS.gene27301:CDS | 50.0% |
| ! | TAGTGGGGGTGGTGATGAAA+AGG | - | chr1.2:2222358-2222377 | MS.gene27301:CDS | 50.0% |
| !! | GAAAAGGGTAGTGGTAGTGG+GGG | - | chr1.2:2222344-2222363 | MS.gene27301:CDS | 50.0% |
| AAGGAGGCGAAGCCGATAAC+CGG | - | chr1.2:2222875-2222894 | MS.gene27301:CDS | 55.0% | |
| GCTCTACCCATTCAGCTACC+AGG | + | chr1.2:2222970-2222989 | None:intergenic | 55.0% | |
| GCTGGTGAAGTTGGGATTCG+AGG | - | chr1.2:2222542-2222561 | MS.gene27301:CDS | 55.0% | |
| GCTTCTACAGCCTACTAGGG+TGG | - | chr1.2:2222988-2223007 | MS.gene27301:CDS | 55.0% | |
| !! | GTTATCGGCTTCGCCTCCTT+CGG | + | chr1.2:2222875-2222894 | None:intergenic | 55.0% |
| AGGAGGCGAAGCCGATAACC+GGG | - | chr1.2:2222876-2222895 | MS.gene27301:CDS | 60.0% | |
| !! | AAGGGTAGTGGTAGTGGGGG+TGG | - | chr1.2:2222347-2222366 | MS.gene27301:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2222248 | 2223090 | 2222248 | ID=MS.gene27301 |
| chr1.2 | mRNA | 2222248 | 2223090 | 2222248 | ID=MS.gene27301.t1;Parent=MS.gene27301 |
| chr1.2 | exon | 2222248 | 2223090 | 2222248 | ID=MS.gene27301.t1.exon1;Parent=MS.gene27301.t1 |
| chr1.2 | CDS | 2222248 | 2223090 | 2222248 | ID=cds.MS.gene27301.t1;Parent=MS.gene27301.t1 |
| Gene Sequence |
| Protein sequence |
