Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28943.t1 | XP_013456572.1 | 96.5 | 375 | 13 | 0 | 1 | 375 | 1 | 375 | 4.20E-197 | 697.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28943.t1 | A0A072UNG4 | 96.5 | 375 | 13 | 0 | 1 | 375 | 1 | 375 | 3.0e-197 | 697.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049653 | MS.gene28943 | 0.823616 | 1.26E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene28943 | 0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene28943 | 0.800864 | 1.18E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene28943 | 0.848643 | 5.38E-60 | -1.69E-46 |
| MS.gene050330 | MS.gene28943 | -0.812827 | 3.49E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene28943 | 0.829913 | 3.95E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene28943 | 0.830715 | 2.51E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene28943 | 0.814338 | 1.62E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene28943 | 0.802286 | 6.03E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene28943 | 0.818243 | 2.17E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene28943 | 0.859334 | 4.45E-63 | -1.69E-46 |
| MS.gene051349 | MS.gene28943 | 0.839655 | 1.39E-57 | -1.69E-46 |
| MS.gene051452 | MS.gene28943 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene28943 | 0.819901 | 9.11E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene28943 | 0.823747 | 1.17E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene28943 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene28943 | 0.907689 | 3.86E-81 | -1.69E-46 |
| MS.gene052302 | MS.gene28943 | 0.846869 | 1.66E-59 | -1.69E-46 |
| MS.gene052376 | MS.gene28943 | 0.845977 | 2.90E-59 | -1.69E-46 |
| MS.gene052856 | MS.gene28943 | 0.833149 | 6.29E-56 | -1.69E-46 |
| MS.gene052858 | MS.gene28943 | 0.819085 | 1.40E-52 | -1.69E-46 |
| MS.gene052860 | MS.gene28943 | 0.81153 | 6.68E-51 | -1.69E-46 |
| MS.gene053188 | MS.gene28943 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene28943 | 0.830209 | 3.34E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene28943 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene054537 | MS.gene28943 | 0.802782 | 4.77E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene28943 | 0.820112 | 8.15E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene28943 | 0.823573 | 1.29E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene28943 | 0.828613 | 8.15E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene28943 | 0.817548 | 3.11E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene28943 | 0.818705 | 1.70E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene28943 | 0.842349 | 2.73E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene28943 | 0.840914 | 6.52E-58 | -1.69E-46 |
| MS.gene057754 | MS.gene28943 | 0.840728 | 7.30E-58 | -1.69E-46 |
| MS.gene05795 | MS.gene28943 | 0.83247 | 9.28E-56 | -1.69E-46 |
| MS.gene058055 | MS.gene28943 | 0.834893 | 2.30E-56 | -1.69E-46 |
| MS.gene058182 | MS.gene28943 | 0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene28943 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene28943 | 0.859789 | 3.24E-63 | -1.69E-46 |
| MS.gene059317 | MS.gene28943 | 0.809934 | 1.48E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene28943 | 0.814375 | 1.59E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene28943 | 0.846588 | 1.98E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28943.t1 | MTR_4g075610 | 97.600 | 375 | 9 | 0 | 1 | 375 | 1 | 375 | 0.0 | 728 |
| MS.gene28943.t1 | MTR_3g117680 | 73.842 | 367 | 85 | 5 | 7 | 370 | 4 | 362 | 0.0 | 536 |
| MS.gene28943.t1 | MTR_4g075610 | 96.552 | 261 | 9 | 0 | 1 | 261 | 1 | 261 | 0.0 | 506 |
| MS.gene28943.t1 | MTR_3g117680 | 73.090 | 301 | 72 | 3 | 7 | 306 | 4 | 296 | 2.85e-157 | 444 |
| MS.gene28943.t1 | MTR_3g117680 | 73.563 | 261 | 60 | 3 | 7 | 266 | 4 | 256 | 3.14e-134 | 384 |
| MS.gene28943.t1 | MTR_3g117680 | 73.541 | 257 | 62 | 4 | 117 | 370 | 1 | 254 | 2.71e-129 | 371 |
| MS.gene28943.t1 | MTR_7g115070 | 24.927 | 341 | 235 | 9 | 13 | 348 | 4 | 328 | 9.93e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28943.t1 | AT4G38810 | 68.611 | 360 | 107 | 4 | 19 | 374 | 13 | 370 | 7.85e-174 | 489 |
| MS.gene28943.t1 | AT4G38810 | 63.740 | 262 | 89 | 4 | 117 | 374 | 1 | 260 | 5.00e-112 | 328 |
| MS.gene28943.t1 | AT5G28830 | 24.731 | 279 | 192 | 6 | 84 | 353 | 54 | 323 | 2.65e-13 | 70.5 |
Find 74 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAATATGGAAACTATTTC+TGG | 0.176008 | 4.4:-34621632 | None:intergenic |
| GAAAATATTAACTGAAATAT+TGG | 0.195437 | 4.4:+34622647 | MS.gene28943:CDS |
| TCTAGATGGTTCTAATATTA+TGG | 0.203327 | 4.4:+34619170 | MS.gene28943:CDS |
| CAACCTGCTGTTTCTGATAT+TGG | 0.268714 | 4.4:+34619291 | MS.gene28943:CDS |
| AAAATATTAACTGAAATATT+GGG | 0.282504 | 4.4:+34622648 | MS.gene28943:CDS |
| TATCCAACTCTTGAAACTTA+TGG | 0.283682 | 4.4:-34619233 | None:intergenic |
| TGATTCAATTTGAGAGAATA+TGG | 0.286182 | 4.4:-34621645 | None:intergenic |
| CTTGTCTAATTCAAACTTGT+TGG | 0.302176 | 4.4:-34622203 | None:intergenic |
| GCTCTTGGTTTACCTGATAA+AGG | 0.312923 | 4.4:+34619318 | MS.gene28943:CDS |
| TCAGGATTAGTGCCTTTATC+AGG | 0.318018 | 4.4:-34619330 | None:intergenic |
| GAATTTGAAGCAACTGCTAT+AGG | 0.336697 | 4.4:-34622699 | None:intergenic |
| GTCACAATGGAGAGTGGTTC+AGG | 0.353157 | 4.4:+34619105 | None:intergenic |
| ATGCAGATGGATAAGGTAAT+TGG | 0.359367 | 4.4:+34622564 | MS.gene28943:intron |
| CATAGTGAAAGCACCTTTGA+TGG | 0.361301 | 4.4:+34622157 | MS.gene28943:CDS |
| TCTGCTGCTTTACCTCCATT+TGG | 0.364921 | 4.4:+34622423 | MS.gene28943:CDS |
| TCTAATATTATGGAGTTAGT+TGG | 0.369024 | 4.4:+34619180 | MS.gene28943:CDS |
| TTCCTCCTACATCCGACTCT+TGG | 0.384801 | 4.4:+34621732 | MS.gene28943:CDS |
| TCTGATATTGGTGCTGCTCT+TGG | 0.389372 | 4.4:+34619303 | MS.gene28943:CDS |
| ATTCTGTTGGGCATGGCTGC+TGG | 0.394761 | 4.4:+34621530 | MS.gene28943:CDS |
| ACTATTTCTGGTTCATAACT+TGG | 0.407354 | 4.4:-34621620 | None:intergenic |
| ATGAGTTATGCTGTTTCAGC+AGG | 0.408229 | 4.4:-34622771 | None:intergenic |
| TCCTCCTACATCCGACTCTT+GGG | 0.417745 | 4.4:+34621733 | MS.gene28943:CDS |
| TTTGGAGGAATTTAAGAAAG+TGG | 0.440664 | 4.4:+34622087 | MS.gene28943:CDS |
| GAATAGATGTGATCAGAATC+AGG | 0.442822 | 4.4:-34619348 | None:intergenic |
| CTCAGACATTCTGTTGGGCA+TGG | 0.454330 | 4.4:+34621523 | MS.gene28943:CDS |
| GGATTACCTACGCGTGGCGC+TGG | 0.455637 | 4.4:+34622386 | MS.gene28943:CDS |
| ACCTCTTCTATTGCACCAAA+TGG | 0.461829 | 4.4:-34622438 | None:intergenic |
| ATTGTGATACTTCGCATTGA+CGG | 0.462861 | 4.4:+34621569 | MS.gene28943:CDS |
| GAGTGTGGCTAATCGTCTTA+AGG | 0.467071 | 4.4:+34622114 | MS.gene28943:CDS |
| GGCAAACTCAATGTTGATCA+AGG | 0.467889 | 4.4:+34621707 | MS.gene28943:CDS |
| TCAATGCGAAGTATCACAAT+AGG | 0.478613 | 4.4:-34621566 | None:intergenic |
| TCTGGTTATGCAGATGGATA+AGG | 0.481564 | 4.4:+34622557 | MS.gene28943:intron |
| CCAGCACTGCTTTCTGAACA+TGG | 0.482659 | 4.4:+34622028 | MS.gene28943:CDS |
| GAACCATAAGTTTCAAGAGT+TGG | 0.484496 | 4.4:+34619230 | MS.gene28943:CDS |
| TATGCTGTTTCAGCAGGGGT+TGG | 0.486278 | 4.4:-34622765 | None:intergenic |
| AGTATTATGTTGCAGTTGGA+AGG | 0.505807 | 4.4:+34622672 | MS.gene28943:CDS |
| GTTCTCTCAGACATTCTGTT+GGG | 0.508617 | 4.4:+34621518 | MS.gene28943:CDS |
| CCTACGCGTGGCGCTGGACA+CGG | 0.510860 | 4.4:+34622392 | MS.gene28943:CDS |
| GGGGAGTATTATGTTGCAGT+TGG | 0.521383 | 4.4:+34622668 | MS.gene28943:CDS |
| CCATGTTCAGAAAGCAGTGC+TGG | 0.523999 | 4.4:-34622028 | None:intergenic |
| GGTTCTCTCAGACATTCTGT+TGG | 0.534972 | 4.4:+34621517 | MS.gene28943:CDS |
| TCACTATGAGCAACTATGAC+AGG | 0.535403 | 4.4:-34622142 | None:intergenic |
| AACGCAGTAGAAGTTCTAGA+TGG | 0.537332 | 4.4:+34619156 | MS.gene28943:CDS |
| GATCTTCTCGAGTTTCTTAG+CGG | 0.539300 | 4.4:+34621596 | MS.gene28943:CDS |
| GAAAGCACCTTTGATGGAAC+TGG | 0.550777 | 4.4:+34622163 | MS.gene28943:CDS |
| TCTGTAGTGCATGAGCCTCT+AGG | 0.553401 | 4.4:+34622720 | MS.gene28943:CDS |
| CTTAACACCAGTTCCATCAA+AGG | 0.563267 | 4.4:-34622170 | None:intergenic |
| AAATATTAACTGAAATATTG+GGG | 0.575923 | 4.4:+34622649 | MS.gene28943:CDS |
| GCTACCCAAGAGTCGGATGT+AGG | 0.576491 | 4.4:-34621737 | None:intergenic |
| TAAGAAAGTGGCATTGAGTG+TGG | 0.578123 | 4.4:+34622099 | MS.gene28943:CDS |
| AATTGGTGAAGTGTTTAAGA+TGG | 0.579084 | 4.4:+34622581 | MS.gene28943:CDS |
| CAACAAGTTTGAATTAGACA+AGG | 0.580853 | 4.4:+34622204 | MS.gene28943:CDS |
| TGGCTGCAGAAGTGTAGAAG+AGG | 0.585644 | 4.4:-34622745 | None:intergenic |
| GAGTGCAGATGATGCAAAGT+TGG | 0.589671 | 4.4:+34622605 | MS.gene28943:CDS |
| GATCTTATAATTCAAGCTCT+CGG | 0.591875 | 4.4:+34621686 | MS.gene28943:CDS |
| CCGTGTCCAGCGCCACGCGT+AGG | 0.593030 | 4.4:-34622392 | None:intergenic |
| AATGGAGGTAAAGCAGCAGA+TGG | 0.595006 | 4.4:-34622420 | None:intergenic |
| TGAGTTATGCTGTTTCAGCA+GGG | 0.605860 | 4.4:-34622770 | None:intergenic |
| TCCATTTGGTGCAATAGAAG+AGG | 0.608402 | 4.4:+34622437 | MS.gene28943:CDS |
| TCTTCTATTGCACCAAATGG+AGG | 0.611998 | 4.4:-34622435 | None:intergenic |
| GCAAACTCAATGTTGATCAA+GGG | 0.613637 | 4.4:+34621708 | MS.gene28943:CDS |
| ACCCAAGAGTCGGATGTAGG+AGG | 0.619508 | 4.4:-34621734 | None:intergenic |
| TTCTGATCACATCTATTCTG+AGG | 0.622184 | 4.4:+34619353 | MS.gene28943:CDS |
| GCACCAATATCAGAAACAGC+AGG | 0.624366 | 4.4:-34619294 | None:intergenic |
| GAGTTATGCTGTTTCAGCAG+GGG | 0.632609 | 4.4:-34622769 | None:intergenic |
| ACAAGAGTCACAATGGAGAG+TGG | 0.640659 | 4.4:+34619099 | None:intergenic |
| ATCGAAGGATTACCTACGCG+TGG | 0.650320 | 4.4:+34622380 | MS.gene28943:CDS |
| GAGCAAGACTGAGTTCAAAG+AGG | 0.651775 | 4.4:+34621496 | MS.gene28943:CDS |
| CAGCACTGCTTTCTGAACAT+GGG | 0.657052 | 4.4:+34622029 | MS.gene28943:CDS |
| ACTATTGGCTACCCAAGAGT+CGG | 0.657759 | 4.4:-34621744 | None:intergenic |
| GAGTTGGATAGAGATAAAGA+TGG | 0.666648 | 4.4:+34619246 | MS.gene28943:CDS |
| GTATTGAATGAATTCACACA+TGG | 0.667218 | 4.4:+34621458 | MS.gene28943:CDS |
| GTAGGTTATCAGCAACATTG+TGG | 0.671379 | 4.4:+34622003 | MS.gene28943:intron |
| AGTGTAGAAGAGGAGCCTAG+AGG | 0.702434 | 4.4:-34622735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAACTGAAATATT+GGG | + | chr4.4:34622648-34622667 | MS.gene28943:CDS | 10.0% |
| !!! | TGATTTTTTCAAATTATTAA+TGG | - | chr4.4:34619607-34619626 | None:intergenic | 10.0% |
| !! | AAATATTAACTGAAATATTG+GGG | + | chr4.4:34622649-34622668 | MS.gene28943:CDS | 15.0% |
| !! | AATTAACATATTAACTCTTT+AGG | + | chr4.4:34621436-34621455 | MS.gene28943:intron | 15.0% |
| !! | ATACAGTAAATTACTATAAT+CGG | + | chr4.4:34619835-34619854 | MS.gene28943:intron | 15.0% |
| !! | GAAAATATTAACTGAAATAT+TGG | + | chr4.4:34622647-34622666 | MS.gene28943:CDS | 15.0% |
| !! | TTATCCATATCTATTAAAAT+AGG | + | chr4.4:34620097-34620116 | MS.gene28943:intron | 15.0% |
| !!! | ACATAACAATTTTTTTACAT+GGG | + | chr4.4:34621855-34621874 | MS.gene28943:intron | 15.0% |
| !!! | ACTATATAACAATTTTTTTG+TGG | + | chr4.4:34621966-34621985 | MS.gene28943:intron | 15.0% |
| !!! | ATTTTTCCATTTTTATCTTT+AGG | - | chr4.4:34622360-34622379 | None:intergenic | 15.0% |
| !! | AAAACGTAGTATGTTAAATT+TGG | - | chr4.4:34621106-34621125 | None:intergenic | 20.0% |
| !! | AATAACAAAACAACAAACAT+TGG | - | chr4.4:34619907-34619926 | None:intergenic | 20.0% |
| !! | ACCAATTAATTAATCTATGA+TGG | + | chr4.4:34622300-34622319 | MS.gene28943:intron | 20.0% |
| !! | ATATTCACAATATATAGTTG+AGG | + | chr4.4:34620985-34621004 | MS.gene28943:intron | 20.0% |
| !! | ATTCATCATATTATTTGTTC+TGG | + | chr4.4:34619879-34619898 | MS.gene28943:intron | 20.0% |
| !! | CATAATATAATTATACGTGT+TGG | + | chr4.4:34619627-34619646 | MS.gene28943:intron | 20.0% |
| !! | CCAATTAATTAATCTATGAT+GGG | + | chr4.4:34622301-34622320 | MS.gene28943:intron | 20.0% |
| !! | TAAAAATGGAAAAATATCGA+AGG | + | chr4.4:34622365-34622384 | MS.gene28943:CDS | 20.0% |
| !! | TATATATTTGGTACATAGTT+AGG | - | chr4.4:34620765-34620784 | None:intergenic | 20.0% |
| !! | TATTCACAATATATAGTTGA+GGG | + | chr4.4:34620986-34621005 | MS.gene28943:intron | 20.0% |
| !! | TGTATTATAAACAATTTGGT+CGG | + | chr4.4:34620055-34620074 | MS.gene28943:intron | 20.0% |
| !! | TGTGTGTATTATAAACAATT+TGG | + | chr4.4:34620051-34620070 | MS.gene28943:intron | 20.0% |
| !! | TGTTTATAATACACACAAAT+AGG | - | chr4.4:34620048-34620067 | None:intergenic | 20.0% |
| !! | TTATTGCTCGTTTATATATT+TGG | - | chr4.4:34620777-34620796 | None:intergenic | 20.0% |
| !!! | CAAACCTATTTTAATAGATA+TGG | - | chr4.4:34620104-34620123 | None:intergenic | 20.0% |
| !!! | CAACTTCTATATTTTTTATC+TGG | - | chr4.4:34620828-34620847 | None:intergenic | 20.0% |
| !!! | GACATAACAATTTTTTTACA+TGG | + | chr4.4:34621854-34621873 | MS.gene28943:intron | 20.0% |
| !!! | TTATTTCTAGTATGAACTAT+TGG | - | chr4.4:34621762-34621781 | None:intergenic | 20.0% |
| !!! | TTTAGAATATCAATTAGAGT+TGG | - | chr4.4:34620945-34620964 | None:intergenic | 20.0% |
| ! | AAAAATATCTCTTGAGAAAC+AGG | - | chr4.4:34622070-34622089 | None:intergenic | 25.0% |
| ! | AACCAGGAACATATAATTTA+TGG | - | chr4.4:34620644-34620663 | None:intergenic | 25.0% |
| ! | AACCATAAATTATATGTTCC+TGG | + | chr4.4:34620639-34620658 | MS.gene28943:intron | 25.0% |
| ! | AATATTTGTGCATGTATATC+TGG | + | chr4.4:34622539-34622558 | MS.gene28943:intron | 25.0% |
| ! | ACAAAATCATAAACGACTTA+TGG | + | chr4.4:34621157-34621176 | MS.gene28943:intron | 25.0% |
| ! | AGACAGATATAAAATGAAAG+TGG | + | chr4.4:34621804-34621823 | MS.gene28943:intron | 25.0% |
| ! | ATATAAAACATAAGCTACCT+TGG | + | chr4.4:34620799-34620818 | MS.gene28943:intron | 25.0% |
| ! | CCCATCATAGATTAATTAAT+TGG | - | chr4.4:34622304-34622323 | None:intergenic | 25.0% |
| ! | CTACACAAAAATTTAGAAAC+AGG | - | chr4.4:34621899-34621918 | None:intergenic | 25.0% |
| ! | TATGGTTGAATAATAATAGC+AGG | - | chr4.4:34620626-34620645 | None:intergenic | 25.0% |
| ! | TCTAATATTATGGAGTTAGT+TGG | + | chr4.4:34619180-34619199 | MS.gene28943:CDS | 25.0% |
| ! | TGATTCAATTTGAGAGAATA+TGG | - | chr4.4:34621648-34621667 | None:intergenic | 25.0% |
| ! | TGTATATGGAGAAAAGAAAA+TGG | - | chr4.4:34620403-34620422 | None:intergenic | 25.0% |
| ! | TTTCTAATACTCTTATCATG+TGG | + | chr4.4:34619800-34619819 | MS.gene28943:intron | 25.0% |
| !! | ATTCAAATTGACTTAATGTG+TGG | - | chr4.4:34621252-34621271 | None:intergenic | 25.0% |
| !! | TGTTTCTCAAGAGATATTTT+TGG | + | chr4.4:34622069-34622088 | MS.gene28943:CDS | 25.0% |
| !! | TTTTCTTTTCTCCATATACA+AGG | + | chr4.4:34620403-34620422 | MS.gene28943:intron | 25.0% |
| !!! | CTGTTTCTAAATTTTTGTGT+AGG | + | chr4.4:34621897-34621916 | MS.gene28943:intron | 25.0% |
| !!! | TAAAGGAGATTTTTTGTGTA+TGG | + | chr4.4:34620710-34620729 | MS.gene28943:intron | 25.0% |
| !!! | TCTAGATGGTTCTAATATTA+TGG | + | chr4.4:34619170-34619189 | MS.gene28943:CDS | 25.0% |
| AAATAAGAACCTATGGAACA+CGG | + | chr4.4:34619534-34619553 | MS.gene28943:intron | 30.0% | |
| AAGTTTGAATTAGACAAGGT+TGG | + | chr4.4:34622208-34622227 | MS.gene28943:intron | 30.0% | |
| ACCTTGCCTAAAGATAAAAA+TGG | + | chr4.4:34622351-34622370 | MS.gene28943:CDS | 30.0% | |
| ACGTAGTATGTTAAATTTGG+TGG | - | chr4.4:34621103-34621122 | None:intergenic | 30.0% | |
| ATTATAAACAATTTGGTCGG+TGG | + | chr4.4:34620058-34620077 | MS.gene28943:intron | 30.0% | |
| CAACAAGTTTGAATTAGACA+AGG | + | chr4.4:34622204-34622223 | MS.gene28943:CDS | 30.0% | |
| CTTGTCTAATTCAAACTTGT+TGG | - | chr4.4:34622206-34622225 | None:intergenic | 30.0% | |
| GAAACAGGACAAAATGAAAT+TGG | - | chr4.4:34621884-34621903 | None:intergenic | 30.0% | |
| GACATTATATTGAACCAATG+AGG | + | chr4.4:34621385-34621404 | MS.gene28943:intron | 30.0% | |
| GAGAATATGGAAACTATTTC+TGG | - | chr4.4:34621635-34621654 | None:intergenic | 30.0% | |
| GATCTTATAATTCAAGCTCT+CGG | + | chr4.4:34621686-34621705 | MS.gene28943:CDS | 30.0% | |
| GTATTGAATGAATTCACACA+TGG | + | chr4.4:34621458-34621477 | MS.gene28943:CDS | 30.0% | |
| GTTCTTAATACTATGAAGCA+CGG | - | chr4.4:34619703-34619722 | None:intergenic | 30.0% | |
| TATCCAACTCTTGAAACTTA+TGG | - | chr4.4:34619236-34619255 | None:intergenic | 30.0% | |
| TCATAAACGACTTATGGTAT+AGG | + | chr4.4:34621163-34621182 | MS.gene28943:intron | 30.0% | |
| TGCCAAATTCAAACAATCTA+TGG | - | chr4.4:34619462-34619481 | None:intergenic | 30.0% | |
| TGCCATAGATTGTTTGAATT+TGG | + | chr4.4:34619457-34619476 | MS.gene28943:intron | 30.0% | |
| TTCAGCTAAATAAGAACCTA+TGG | + | chr4.4:34619527-34619546 | MS.gene28943:intron | 30.0% | |
| TTTGGAGGAATTTAAGAAAG+TGG | + | chr4.4:34622087-34622106 | MS.gene28943:CDS | 30.0% | |
| ! | AATTGGTGAAGTGTTTAAGA+TGG | + | chr4.4:34622581-34622600 | MS.gene28943:CDS | 30.0% |
| ! | AGTTTTCTCAAACATTGTAG+TGG | + | chr4.4:34620287-34620306 | MS.gene28943:intron | 30.0% |
| ! | GATCAGGCTCTAATATATAA+TGG | + | chr4.4:34620472-34620491 | MS.gene28943:intron | 30.0% |
| ! | TAATCACTCTCTAAAAGTGT+TGG | - | chr4.4:34621075-34621094 | None:intergenic | 30.0% |
| !! | ACTATTTCTGGTTCATAACT+TGG | - | chr4.4:34621623-34621642 | None:intergenic | 30.0% |
| !! | TCCATTTTTATCTTTAGGCA+AGG | - | chr4.4:34622355-34622374 | None:intergenic | 30.0% |
| !!! | AGGTTGGTCTATTTTCATTT+TGG | + | chr4.4:34622224-34622243 | MS.gene28943:intron | 30.0% |
| !!! | TATTTTTTATCTGGTGACCA+AGG | - | chr4.4:34620819-34620838 | None:intergenic | 30.0% |
| !!! | TTCTCAAGAGATATTTTTGG+AGG | + | chr4.4:34622072-34622091 | MS.gene28943:CDS | 30.0% |
| AATTATATGTTCCTGGTTGC+TGG | + | chr4.4:34620646-34620665 | MS.gene28943:intron | 35.0% | |
| ACAGATTCTTATCAGCACTA+AGG | - | chr4.4:34621350-34621369 | None:intergenic | 35.0% | |
| ACTAGTACTATGTCTGTTTG+TGG | + | chr4.4:34619969-34619988 | MS.gene28943:intron | 35.0% | |
| AGATAGATCATGATGCTTCT+AGG | - | chr4.4:34620003-34620022 | None:intergenic | 35.0% | |
| AGTATTATGTTGCAGTTGGA+AGG | + | chr4.4:34622672-34622691 | MS.gene28943:CDS | 35.0% | |
| ATATATTAGAGCCTGATCAG+AGG | - | chr4.4:34620470-34620489 | None:intergenic | 35.0% | |
| ATGCACACCAAAATCATAGT+AGG | + | chr4.4:34620905-34620924 | MS.gene28943:intron | 35.0% | |
| ATGCAGATGGATAAGGTAAT+TGG | + | chr4.4:34622564-34622583 | MS.gene28943:intron | 35.0% | |
| ATTGTGATACTTCGCATTGA+CGG | + | chr4.4:34621569-34621588 | MS.gene28943:CDS | 35.0% | |
| CCATAAACATGGAAAACTCA+CGG | - | chr4.4:34620221-34620240 | None:intergenic | 35.0% | |
| CCATGTTTATGGCAAAATCA+CGG | + | chr4.4:34620229-34620248 | MS.gene28943:intron | 35.0% | |
| CTAATACTCTTATCATGTGG+TGG | + | chr4.4:34619803-34619822 | MS.gene28943:intron | 35.0% | |
| GAACCATAAGTTTCAAGAGT+TGG | + | chr4.4:34619230-34619249 | MS.gene28943:CDS | 35.0% | |
| GAATAGATGTGATCAGAATC+AGG | - | chr4.4:34619351-34619370 | None:intergenic | 35.0% | |
| GAGTTGGATAGAGATAAAGA+TGG | + | chr4.4:34619246-34619265 | MS.gene28943:CDS | 35.0% | |
| GCAAACTCAATGTTGATCAA+GGG | + | chr4.4:34621708-34621727 | MS.gene28943:CDS | 35.0% | |
| TGTATATCTGGTTATGCAGA+TGG | + | chr4.4:34622551-34622570 | MS.gene28943:intron | 35.0% | |
| TGTTGGTATTGTCTAAGTGT+CGG | + | chr4.4:34619644-34619663 | MS.gene28943:intron | 35.0% | |
| TTCTGATCACATCTATTCTG+AGG | + | chr4.4:34619353-34619372 | MS.gene28943:CDS | 35.0% | |
| TTGAGAAAACTACGAAACCA+AGG | - | chr4.4:34620278-34620297 | None:intergenic | 35.0% | |
| ! | AAACATTGTAGTGGAAGCAT+GGG | + | chr4.4:34620296-34620315 | MS.gene28943:intron | 35.0% |
| ! | ACTCTAGAAAGAGCTATCAA+AGG | - | chr4.4:34621044-34621063 | None:intergenic | 35.0% |
| ! | AGATCGTGAAGAGATTTTTG+AGG | - | chr4.4:34621671-34621690 | None:intergenic | 35.0% |
| ! | CTCTAGAAAGAGCTATCAAA+GGG | - | chr4.4:34621043-34621062 | None:intergenic | 35.0% |
| ! | GAATTTGAAGCAACTGCTAT+AGG | - | chr4.4:34622702-34622721 | None:intergenic | 35.0% |
| ! | GTCATTTCTTGTTTCCTCAT+TGG | - | chr4.4:34621402-34621421 | None:intergenic | 35.0% |
| ! | TCAATGCGAAGTATCACAAT+AGG | - | chr4.4:34621569-34621588 | None:intergenic | 35.0% |
| ! | TCTTTTCTCCATATACAAGG+AGG | + | chr4.4:34620406-34620425 | MS.gene28943:intron | 35.0% |
| !! | AATTCGTAGCCTTATCTTCT+AGG | - | chr4.4:34619769-34619788 | None:intergenic | 35.0% |
| !! | CAAAATCACGGTTATTTTCC+AGG | + | chr4.4:34620241-34620260 | MS.gene28943:intron | 35.0% |
| ACCAAGGTTCTATTTGAACC+TGG | - | chr4.4:34620262-34620281 | None:intergenic | 40.0% | |
| ACCTCTTCTATTGCACCAAA+TGG | - | chr4.4:34622441-34622460 | None:intergenic | 40.0% | |
| ATATACAAGGAGGAATCTGG+GGG | + | chr4.4:34620416-34620435 | MS.gene28943:intron | 40.0% | |
| CATATACAAGGAGGAATCTG+GGG | + | chr4.4:34620415-34620434 | MS.gene28943:intron | 40.0% | |
| CCATATACAAGGAGGAATCT+GGG | + | chr4.4:34620414-34620433 | MS.gene28943:intron | 40.0% | |
| CTTAACACCAGTTCCATCAA+AGG | - | chr4.4:34622173-34622192 | None:intergenic | 40.0% | |
| GACTTATGGTATAGGACACA+TGG | + | chr4.4:34621171-34621190 | MS.gene28943:intron | 40.0% | |
| GATCTTCTCGAGTTTCTTAG+CGG | + | chr4.4:34621596-34621615 | MS.gene28943:CDS | 40.0% | |
| GCCTTATCTTCTAGGTAAGT+CGG | - | chr4.4:34619761-34619780 | None:intergenic | 40.0% | |
| GCTCTTGGTTTACCTGATAA+AGG | + | chr4.4:34619318-34619337 | MS.gene28943:CDS | 40.0% | |
| GGCAAACTCAATGTTGATCA+AGG | + | chr4.4:34621707-34621726 | MS.gene28943:CDS | 40.0% | |
| GGTATTATGAACCTCTGATC+AGG | + | chr4.4:34620456-34620475 | MS.gene28943:intron | 40.0% | |
| GGTTCAGGTAAGAGAAAAAG+TGG | + | chr4.4:34619120-34619139 | MS.gene28943:CDS | 40.0% | |
| GTAGGTTATCAGCAACATTG+TGG | + | chr4.4:34622003-34622022 | MS.gene28943:intron | 40.0% | |
| GTTCTCTCAGACATTCTGTT+GGG | + | chr4.4:34621518-34621537 | MS.gene28943:CDS | 40.0% | |
| TAGTACTCAGTACTCAGACA+AGG | + | chr4.4:34620551-34620570 | MS.gene28943:intron | 40.0% | |
| TCACTATGAGCAACTATGAC+AGG | - | chr4.4:34622145-34622164 | None:intergenic | 40.0% | |
| TCAGGTAAGAGAAAAAGTGG+TGG | + | chr4.4:34619123-34619142 | MS.gene28943:CDS | 40.0% | |
| TCCAGGTTCAAATAGAACCT+TGG | + | chr4.4:34620258-34620277 | MS.gene28943:intron | 40.0% | |
| TCCATATACAAGGAGGAATC+TGG | + | chr4.4:34620413-34620432 | MS.gene28943:intron | 40.0% | |
| TCTGGTTATGCAGATGGATA+AGG | + | chr4.4:34622557-34622576 | MS.gene28943:intron | 40.0% | |
| TCTTCTATTGCACCAAATGG+AGG | - | chr4.4:34622438-34622457 | None:intergenic | 40.0% | |
| TGCGTGGACAAGCAAATTAA+AGG | + | chr4.4:34620693-34620712 | MS.gene28943:intron | 40.0% | |
| TGTTTGTATCCGTGTTCCAT+AGG | - | chr4.4:34619546-34619565 | None:intergenic | 40.0% | |
| ! | ACCGACTTACCTAGAAGATA+AGG | + | chr4.4:34619757-34619776 | MS.gene28943:intron | 40.0% |
| ! | CAAACATTGTAGTGGAAGCA+TGG | + | chr4.4:34620295-34620314 | MS.gene28943:intron | 40.0% |
| ! | CCGTGAGTTTTCCATGTTTA+TGG | + | chr4.4:34620218-34620237 | MS.gene28943:intron | 40.0% |
| ! | CCGTGATTTTGCCATAAACA+TGG | - | chr4.4:34620232-34620251 | None:intergenic | 40.0% |
| ! | GCTCACACCTACTATGATTT+TGG | - | chr4.4:34620915-34620934 | None:intergenic | 40.0% |
| ! | TAAGAAAGTGGCATTGAGTG+TGG | + | chr4.4:34622099-34622118 | MS.gene28943:CDS | 40.0% |
| ! | TCAGGATTAGTGCCTTTATC+AGG | - | chr4.4:34619333-34619352 | None:intergenic | 40.0% |
| !! | AACGCAGTAGAAGTTCTAGA+TGG | + | chr4.4:34619156-34619175 | MS.gene28943:CDS | 40.0% |
| !! | CAACCTGCTGTTTCTGATAT+TGG | + | chr4.4:34619291-34619310 | MS.gene28943:CDS | 40.0% |
| !! | CATAGTGAAAGCACCTTTGA+TGG | + | chr4.4:34622157-34622176 | MS.gene28943:CDS | 40.0% |
| !! | TCCATTTGGTGCAATAGAAG+AGG | + | chr4.4:34622437-34622456 | MS.gene28943:CDS | 40.0% |
| !!! | GGGGAATTTTTTGTTGCTGT+TGG | + | chr4.4:34620435-34620454 | MS.gene28943:intron | 40.0% |
| AAACAATTTGGTCGGTGGTG+TGG | + | chr4.4:34620063-34620082 | MS.gene28943:intron | 45.0% | |
| AACAATTTGGTCGGTGGTGT+GGG | + | chr4.4:34620064-34620083 | MS.gene28943:intron | 45.0% | |
| AATGGAGGTAAAGCAGCAGA+TGG | - | chr4.4:34622423-34622442 | None:intergenic | 45.0% | |
| ACATACACTTAGCGTCCGTT+TGG | + | chr4.4:34620185-34620204 | MS.gene28943:intron | 45.0% | |
| ATCAGTATCCATGTCGTGTG+TGG | - | chr4.4:34619575-34619594 | None:intergenic | 45.0% | |
| CACGCAAGAAACATAGCCTT+AGG | - | chr4.4:34620679-34620698 | None:intergenic | 45.0% | |
| CAGCACTGCTTTCTGAACAT+GGG | + | chr4.4:34622029-34622048 | MS.gene28943:CDS | 45.0% | |
| CCCAGATTCCTCCTTGTATA+TGG | - | chr4.4:34620417-34620436 | None:intergenic | 45.0% | |
| CTAAGGCTATGTTTCTTGCG+TGG | + | chr4.4:34620677-34620696 | MS.gene28943:intron | 45.0% | |
| GAGCAAGACTGAGTTCAAAG+AGG | + | chr4.4:34621496-34621515 | MS.gene28943:CDS | 45.0% | |
| GAGTGCAGATGATGCAAAGT+TGG | + | chr4.4:34622605-34622624 | MS.gene28943:CDS | 45.0% | |
| GAGTGTGGCTAATCGTCTTA+AGG | + | chr4.4:34622114-34622133 | MS.gene28943:CDS | 45.0% | |
| GCACCAATATCAGAAACAGC+AGG | - | chr4.4:34619297-34619316 | None:intergenic | 45.0% | |
| GGTAAGAGAAAAAGTGGTGG+TGG | + | chr4.4:34619126-34619145 | MS.gene28943:CDS | 45.0% | |
| GGTTCTCTCAGACATTCTGT+TGG | + | chr4.4:34621517-34621536 | MS.gene28943:CDS | 45.0% | |
| GTGGCTTGATCATTCTGTGT+AGG | + | chr4.4:34621985-34622004 | MS.gene28943:intron | 45.0% | |
| ! | ACTATTGGCTACCCAAGAGT+CGG | - | chr4.4:34621747-34621766 | None:intergenic | 45.0% |
| ! | CTATGTCTGTTTGTGGACTG+TGG | + | chr4.4:34619976-34619995 | MS.gene28943:intron | 45.0% |
| !! | AAGAGAAAAAGTGGTGGTGG+TGG | + | chr4.4:34619129-34619148 | MS.gene28943:CDS | 45.0% |
| !! | GAAAGCACCTTTGATGGAAC+TGG | + | chr4.4:34622163-34622182 | MS.gene28943:CDS | 45.0% |
| !! | GGGGAGTATTATGTTGCAGT+TGG | + | chr4.4:34622668-34622687 | MS.gene28943:CDS | 45.0% |
| !! | TCTGATATTGGTGCTGCTCT+TGG | + | chr4.4:34619303-34619322 | MS.gene28943:CDS | 45.0% |
| !! | TCTGCTGCTTTACCTCCATT+TGG | + | chr4.4:34622423-34622442 | MS.gene28943:CDS | 45.0% |
| AGTGTAGAAGAGGAGCCTAG+AGG | - | chr4.4:34622738-34622757 | None:intergenic | 50.0% | |
| ATCGAAGGATTACCTACGCG+TGG | + | chr4.4:34622380-34622399 | MS.gene28943:CDS | 50.0% | |
| CACGGTGCAACCAAACCAAA+CGG | - | chr4.4:34620203-34620222 | None:intergenic | 50.0% | |
| CACTTAGCGTCCGTTTGGTT+TGG | + | chr4.4:34620190-34620209 | MS.gene28943:intron | 50.0% | |
| CCAGCACTGCTTTCTGAACA+TGG | + | chr4.4:34622028-34622047 | MS.gene28943:CDS | 50.0% | |
| CCATGTTCAGAAAGCAGTGC+TGG | - | chr4.4:34622031-34622050 | None:intergenic | 50.0% | |
| CTCAGACATTCTGTTGGGCA+TGG | + | chr4.4:34621523-34621542 | MS.gene28943:CDS | 50.0% | |
| TCCTCCTACATCCGACTCTT+GGG | + | chr4.4:34621733-34621752 | MS.gene28943:CDS | 50.0% | |
| TCTGTAGTGCATGAGCCTCT+AGG | + | chr4.4:34622720-34622739 | MS.gene28943:CDS | 50.0% | |
| TTCCTCCTACATCCGACTCT+TGG | + | chr4.4:34621732-34621751 | MS.gene28943:CDS | 50.0% | |
| ! | CATTGTAGTGGAAGCATGGG+TGG | + | chr4.4:34620299-34620318 | MS.gene28943:intron | 50.0% |
| ! | TGGCTGCAGAAGTGTAGAAG+AGG | - | chr4.4:34622748-34622767 | None:intergenic | 50.0% |
| !! | AGAAAAAGTGGTGGTGGTGG+TGG | + | chr4.4:34619132-34619151 | MS.gene28943:CDS | 50.0% |
| !! | TATGCTGTTTCAGCAGGGGT+TGG | - | chr4.4:34622768-34622787 | None:intergenic | 50.0% |
| ACCCAAGAGTCGGATGTAGG+AGG | - | chr4.4:34621737-34621756 | None:intergenic | 55.0% | |
| ATTCTGTTGGGCATGGCTGC+TGG | + | chr4.4:34621530-34621549 | MS.gene28943:CDS | 55.0% | |
| CACGAACACCACACACGACA+TGG | + | chr4.4:34619564-34619583 | MS.gene28943:intron | 55.0% | |
| GCTACCCAAGAGTCGGATGT+AGG | - | chr4.4:34621740-34621759 | None:intergenic | 55.0% | |
| TAGGAATGCAGCCAGCAACC+AGG | - | chr4.4:34620660-34620679 | None:intergenic | 55.0% | |
| ! | GGTTGCTGGCTGCATTCCTA+AGG | + | chr4.4:34620660-34620679 | MS.gene28943:intron | 55.0% |
| AGCATGGGTGGACGTGCGTT+TGG | + | chr4.4:34620311-34620330 | MS.gene28943:intron | 60.0% | |
| GAAGCACGGACACTGCGTGT+GGG | - | chr4.4:34619689-34619708 | None:intergenic | 60.0% | |
| TGAAGCACGGACACTGCGTG+TGG | - | chr4.4:34619690-34619709 | None:intergenic | 60.0% | |
| GGATTACCTACGCGTGGCGC+TGG | + | chr4.4:34622386-34622405 | MS.gene28943:CDS | 65.0% | |
| ! | CCTACGCGTGGCGCTGGACA+CGG | + | chr4.4:34622392-34622411 | MS.gene28943:CDS | 70.0% |
| CCGTGTCCAGCGCCACGCGT+AGG | - | chr4.4:34622395-34622414 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34619111 | 34622788 | 34619111 | ID=MS.gene28943 |
| chr4.4 | mRNA | 34619111 | 34622788 | 34619111 | ID=MS.gene28943.t1;Parent=MS.gene28943 |
| chr4.4 | exon | 34619111 | 34619374 | 34619111 | ID=MS.gene28943.t1.exon1;Parent=MS.gene28943.t1 |
| chr4.4 | CDS | 34619111 | 34619374 | 34619111 | ID=cds.MS.gene28943.t1;Parent=MS.gene28943.t1 |
| chr4.4 | exon | 34621458 | 34621754 | 34621458 | ID=MS.gene28943.t1.exon2;Parent=MS.gene28943.t1 |
| chr4.4 | CDS | 34621458 | 34621754 | 34621458 | ID=cds.MS.gene28943.t1;Parent=MS.gene28943.t1 |
| chr4.4 | exon | 34622007 | 34622225 | 34622007 | ID=MS.gene28943.t1.exon3;Parent=MS.gene28943.t1 |
| chr4.4 | CDS | 34622007 | 34622225 | 34622007 | ID=cds.MS.gene28943.t1;Parent=MS.gene28943.t1 |
| chr4.4 | exon | 34622330 | 34622458 | 34622330 | ID=MS.gene28943.t1.exon4;Parent=MS.gene28943.t1 |
| chr4.4 | CDS | 34622330 | 34622458 | 34622330 | ID=cds.MS.gene28943.t1;Parent=MS.gene28943.t1 |
| chr4.4 | exon | 34622570 | 34622788 | 34622570 | ID=MS.gene28943.t1.exon5;Parent=MS.gene28943.t1 |
| chr4.4 | CDS | 34622570 | 34622788 | 34622570 | ID=cds.MS.gene28943.t1;Parent=MS.gene28943.t1 |
| Gene Sequence |
| Protein sequence |
