Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29205.t1 | XP_003613143.1 | 91.4 | 382 | 33 | 0 | 1 | 382 | 1 | 382 | 8.00E-204 | 719.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29205.t1 | Q9FVQ0 | 56.5 | 372 | 162 | 0 | 3 | 374 | 2 | 373 | 8.5e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29205.t1 | G7JYZ1 | 91.4 | 382 | 33 | 0 | 1 | 382 | 1 | 382 | 5.8e-204 | 719.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23537 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene40340 | PPI |
| MS.gene51580 | MS.gene29205 | PPI |
| MS.gene61665 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene60245 | PPI |
| MS.gene29205 | MS.gene061851 | PPI |
| MS.gene29205 | MS.gene018590 | PPI |
| MS.gene94810 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene015953 | PPI |
| MS.gene031178 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene064951 | PPI |
| MS.gene64265 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene32792 | PPI |
| MS.gene29205 | MS.gene059136 | PPI |
| MS.gene56048 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene021474 | PPI |
| MS.gene29205 | MS.gene53594 | PPI |
| MS.gene24021 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene038029 | PPI |
| MS.gene29205 | MS.gene014685 | PPI |
| MS.gene29205 | MS.gene31616 | PPI |
| MS.gene059027 | MS.gene29205 | PPI |
| MS.gene29205 | MS.gene09884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29205.t1 | MTR_5g033260 | 91.361 | 382 | 33 | 0 | 1 | 382 | 1 | 382 | 0.0 | 725 |
| MS.gene29205.t1 | MTR_8g432640 | 84.031 | 382 | 61 | 0 | 1 | 382 | 1 | 382 | 0.0 | 671 |
| MS.gene29205.t1 | MTR_3g088925 | 52.116 | 378 | 179 | 2 | 3 | 379 | 4 | 380 | 5.12e-140 | 404 |
| MS.gene29205.t1 | MTR_3g088945 | 51.587 | 378 | 181 | 2 | 3 | 379 | 4 | 380 | 1.25e-138 | 400 |
| MS.gene29205.t1 | MTR_3g088955 | 51.323 | 378 | 182 | 2 | 3 | 379 | 4 | 380 | 7.81e-138 | 399 |
| MS.gene29205.t1 | MTR_7g107690 | 49.598 | 373 | 188 | 0 | 2 | 374 | 4 | 376 | 9.34e-138 | 398 |
| MS.gene29205.t1 | MTR_7g107710 | 50.933 | 375 | 182 | 2 | 1 | 374 | 1 | 374 | 4.02e-135 | 391 |
| MS.gene29205.t1 | MTR_4g051642 | 51.852 | 378 | 179 | 3 | 3 | 379 | 4 | 379 | 1.28e-134 | 390 |
| MS.gene29205.t1 | MTR_3g109520 | 46.381 | 373 | 194 | 2 | 7 | 374 | 40 | 411 | 1.44e-121 | 358 |
| MS.gene29205.t1 | MTR_1g069275 | 47.769 | 381 | 183 | 6 | 7 | 378 | 26 | 399 | 1.93e-119 | 353 |
| MS.gene29205.t1 | MTR_6g086870 | 46.194 | 381 | 194 | 4 | 7 | 378 | 21 | 399 | 1.40e-118 | 350 |
| MS.gene29205.t1 | MTR_7g099330 | 46.684 | 377 | 189 | 4 | 7 | 378 | 25 | 394 | 1.51e-118 | 350 |
| MS.gene29205.t1 | MTR_1g008380 | 44.562 | 377 | 202 | 3 | 7 | 378 | 43 | 417 | 5.33e-117 | 347 |
| MS.gene29205.t1 | MTR_1g046230 | 45.312 | 384 | 199 | 6 | 7 | 382 | 25 | 405 | 1.41e-116 | 345 |
| MS.gene29205.t1 | MTR_1g011630 | 44.828 | 377 | 197 | 5 | 7 | 378 | 17 | 387 | 7.83e-116 | 343 |
| MS.gene29205.t1 | MTR_3g096030 | 74.725 | 182 | 22 | 1 | 1 | 182 | 1 | 158 | 1.72e-90 | 269 |
| MS.gene29205.t1 | MTR_7g099160 | 44.444 | 306 | 158 | 4 | 78 | 378 | 217 | 515 | 3.51e-83 | 263 |
| MS.gene29205.t1 | MTR_3g096020 | 53.982 | 113 | 14 | 3 | 212 | 323 | 1 | 76 | 1.01e-23 | 103 |
| MS.gene29205.t1 | MTR_2g450310 | 25.263 | 380 | 211 | 15 | 3 | 316 | 2 | 374 | 2.89e-14 | 74.3 |
| MS.gene29205.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 7.05e-13 | 68.6 |
| MS.gene29205.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.01e-12 | 68.9 |
| MS.gene29205.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.58e-12 | 68.9 |
| MS.gene29205.t1 | MTR_8g037880 | 23.874 | 222 | 142 | 5 | 6 | 202 | 4 | 223 | 2.25e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29205.t1 | AT1G48910 | 56.452 | 372 | 162 | 0 | 3 | 374 | 2 | 373 | 7.71e-156 | 444 |
| MS.gene29205.t1 | AT1G21430 | 51.206 | 373 | 177 | 4 | 6 | 376 | 9 | 378 | 1.12e-132 | 385 |
| MS.gene29205.t1 | AT1G04610 | 47.340 | 376 | 188 | 4 | 7 | 374 | 38 | 411 | 2.31e-123 | 363 |
| MS.gene29205.t1 | AT5G11320 | 46.419 | 377 | 189 | 4 | 7 | 378 | 18 | 386 | 1.61e-120 | 355 |
| MS.gene29205.t1 | AT5G25620 | 46.053 | 380 | 195 | 5 | 7 | 379 | 33 | 409 | 9.88e-119 | 351 |
| MS.gene29205.t1 | AT1G04180 | 45.646 | 379 | 196 | 5 | 7 | 379 | 26 | 400 | 1.57e-118 | 350 |
| MS.gene29205.t1 | AT5G43890 | 45.789 | 380 | 197 | 5 | 7 | 379 | 26 | 403 | 1.73e-118 | 350 |
| MS.gene29205.t1 | AT5G25620 | 46.438 | 379 | 193 | 5 | 7 | 378 | 33 | 408 | 2.55e-118 | 350 |
| MS.gene29205.t1 | AT4G28720 | 44.792 | 384 | 202 | 6 | 7 | 382 | 26 | 407 | 1.40e-116 | 345 |
| MS.gene29205.t1 | AT4G32540 | 44.709 | 378 | 196 | 5 | 7 | 378 | 22 | 392 | 2.59e-115 | 342 |
| MS.gene29205.t1 | AT4G32540 | 44.855 | 379 | 196 | 5 | 7 | 378 | 22 | 394 | 2.82e-115 | 342 |
| MS.gene29205.t1 | AT4G13260 | 44.855 | 379 | 203 | 2 | 7 | 380 | 29 | 406 | 1.24e-114 | 340 |
| MS.gene29205.t1 | AT2G33230 | 44.474 | 380 | 200 | 5 | 7 | 378 | 33 | 409 | 1.13e-110 | 331 |
| MS.gene29205.t1 | AT5G11320 | 46.440 | 323 | 161 | 3 | 7 | 324 | 18 | 333 | 4.78e-101 | 303 |
| MS.gene29205.t1 | AT4G13260 | 47.163 | 282 | 144 | 1 | 7 | 283 | 29 | 310 | 2.20e-90 | 275 |
| MS.gene29205.t1 | AT4G13260 | 41.216 | 296 | 168 | 2 | 90 | 380 | 9 | 303 | 1.29e-73 | 232 |
| MS.gene29205.t1 | AT1G62560 | 25.581 | 215 | 127 | 6 | 6 | 190 | 13 | 224 | 1.77e-13 | 71.6 |
| MS.gene29205.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 2.64e-13 | 71.6 |
| MS.gene29205.t1 | AT1G65860 | 22.566 | 226 | 145 | 6 | 6 | 203 | 13 | 236 | 7.15e-11 | 63.9 |
Find 99 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGATTTATCGTCCCAAAT+TGG | 0.218572 | 5.3:+22635190 | MS.gene29205:CDS |
| GTATTGAAGGAATTGGTATT+TGG | 0.229329 | 5.3:-22633847 | None:intergenic |
| AATTATGAAAATTAAAAGTT+TGG | 0.248270 | 5.3:-22636029 | None:intergenic |
| GTAGTTGGGTGTGGTAATTC+AGG | 0.264417 | 5.3:+22634149 | MS.gene29205:CDS |
| ATTGTAGGTGCTGGTCCTTC+TGG | 0.274701 | 5.3:+22633645 | MS.gene29205:CDS |
| GGATGCTATCATTACTTTAT+CGG | 0.293233 | 5.3:+22635136 | MS.gene29205:CDS |
| AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 5.3:-22633822 | None:intergenic |
| ATGATTGTTGTGCTTCTCTT+TGG | 0.323198 | 5.3:+22633727 | MS.gene29205:CDS |
| ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 5.3:+22634127 | MS.gene29205:CDS |
| CTGAGGGTGGGTGAGGCATG+AGG | 0.329207 | 5.3:-22633809 | None:intergenic |
| GAGTTGTAAAGGTCCCAATT+TGG | 0.331158 | 5.3:-22635204 | None:intergenic |
| GGACTTCGAACGACAATAGA+TGG | 0.338818 | 5.3:-22634212 | None:intergenic |
| TTATCGGCAAAACTAAAATA+TGG | 0.345197 | 5.3:+22635152 | MS.gene29205:CDS |
| GAACACTATAGAAGGGATAT+TGG | 0.347771 | 5.3:+22633974 | MS.gene29205:CDS |
| AGGCTTGTGGGGAGTCAAAA+TGG | 0.349213 | 5.3:+22635978 | MS.gene29205:CDS |
| TGTCTATGTATTGAAGGAAT+TGG | 0.353488 | 5.3:-22633854 | None:intergenic |
| AGTTGTAAAGGTCCCAATTT+GGG | 0.358601 | 5.3:-22635203 | None:intergenic |
| TGGAACTGTCGAAAAGATTA+AGG | 0.360924 | 5.3:+22635262 | MS.gene29205:CDS |
| GGCTACAAAAGCATAACTAA+TGG | 0.367252 | 5.3:+22635659 | MS.gene29205:CDS |
| GAAACAAAGAACACTATAGA+AGG | 0.371049 | 5.3:+22633966 | MS.gene29205:CDS |
| CACTCTAAATATTACAAATC+TGG | 0.373703 | 5.3:+22634098 | MS.gene29205:CDS |
| GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 5.3:-22633816 | None:intergenic |
| ATCTATTGTCGTTCGAAGTC+CGG | 0.385488 | 5.3:+22634214 | MS.gene29205:CDS |
| GATTAAGGAGGGATCTATAA+AGG | 0.408201 | 5.3:+22635277 | MS.gene29205:CDS |
| GGGATTTATCGTCCCAAATT+GGG | 0.412423 | 5.3:+22635191 | MS.gene29205:CDS |
| TTATACAGTCCAGGCACATT+AGG | 0.417154 | 5.3:-22634056 | None:intergenic |
| AAAATGCTTACCCGAATCAT+TGG | 0.418784 | 5.3:+22635914 | MS.gene29205:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 5.3:-22633860 | None:intergenic |
| CATAACTAATGGGTGGCTTA+AGG | 0.420449 | 5.3:+22635670 | MS.gene29205:CDS |
| GAATCCACAGTTGTAATTGT+AGG | 0.425297 | 5.3:+22633630 | MS.gene29205:CDS |
| GGGACGATAAATCCCGTACT+TGG | 0.427951 | 5.3:-22635183 | None:intergenic |
| CTCATGCCTCACCCACCCTC+AGG | 0.443220 | 5.3:+22633810 | MS.gene29205:CDS |
| ATTGTTGTGCTTCTCTTTGG+AGG | 0.448516 | 5.3:+22633730 | MS.gene29205:CDS |
| AAATATGCTCTTAATGAGAA+AGG | 0.450742 | 5.3:+22635883 | MS.gene29205:CDS |
| GCTACAAAAGCATAACTAAT+GGG | 0.458461 | 5.3:+22635660 | MS.gene29205:CDS |
| GCTTATGATCTCTATAACTC+GGG | 0.459427 | 5.3:+22634182 | MS.gene29205:CDS |
| GGTATTTGGATAGGTAGGTT+GGG | 0.467624 | 5.3:-22633833 | None:intergenic |
| TATGGTGATTTGTCCAAGTA+CGG | 0.467911 | 5.3:+22635170 | MS.gene29205:CDS |
| GGATAGGTAGGTTGGGCCTG+AGG | 0.468970 | 5.3:-22633826 | None:intergenic |
| AATATGCTCTTAATGAGAAA+GGG | 0.471517 | 5.3:+22635884 | MS.gene29205:CDS |
| AGGGATATTGGAAGTTTATG+AGG | 0.472958 | 5.3:+22633986 | MS.gene29205:CDS |
| TGAGGGTGGGTGAGGCATGA+GGG | 0.473573 | 5.3:-22633808 | None:intergenic |
| ATAGCATCCACAATAGCAAC+AGG | 0.477465 | 5.3:-22635122 | None:intergenic |
| GTCAGGTTCTTGAGTTGTAA+AGG | 0.478191 | 5.3:-22635215 | None:intergenic |
| ACTGTCAAGGAGAGGCTTGT+GGG | 0.478876 | 5.3:+22635966 | MS.gene29205:CDS |
| AAGTTTCTTGTGATCGCCAC+TGG | 0.479220 | 5.3:+22634011 | MS.gene29205:CDS |
| ATTTCACCATTCGCATCCCT+TGG | 0.479361 | 5.3:-22635094 | None:intergenic |
| GAATTGGTATTTGGATAGGT+AGG | 0.480246 | 5.3:-22633838 | None:intergenic |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 5.3:+22634047 | MS.gene29205:CDS |
| ATGACGAGGTTAGAAACAAA+TGG | 0.489770 | 5.3:+22633937 | MS.gene29205:CDS |
| GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 5.3:-22633825 | None:intergenic |
| GAAGGAATTGGTATTTGGAT+AGG | 0.493929 | 5.3:-22633842 | None:intergenic |
| GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 5.3:-22633821 | None:intergenic |
| AAGTCTGCGGTTATTGATGT+TGG | 0.503142 | 5.3:+22635242 | MS.gene29205:CDS |
| TGGTATTTGGATAGGTAGGT+TGG | 0.507880 | 5.3:-22633834 | None:intergenic |
| CCTGGACTGTATAACTTTGA+AGG | 0.509709 | 5.3:+22634065 | MS.gene29205:CDS |
| GATCATGGATTGTACTGTGC+AGG | 0.519262 | 5.3:+22635943 | MS.gene29205:CDS |
| TAACCGCAGACTTTCCTGTC+AGG | 0.521334 | 5.3:-22635232 | None:intergenic |
| TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 5.3:+22634121 | MS.gene29205:CDS |
| TGCTTATGATCTCTATAACT+CGG | 0.526560 | 5.3:+22634181 | MS.gene29205:CDS |
| ATGGTGATTTGTCCAAGTAC+GGG | 0.532353 | 5.3:+22635171 | MS.gene29205:CDS |
| GACTGTCAAGGAGAGGCTTG+TGG | 0.533040 | 5.3:+22635965 | MS.gene29205:CDS |
| ACAGTTGTAATTGTAGGTGC+TGG | 0.535522 | 5.3:+22633636 | MS.gene29205:CDS |
| CCTTCAAAGTTATACAGTCC+AGG | 0.548937 | 5.3:-22634065 | None:intergenic |
| GAGGGTGGGTGAGGCATGAG+GGG | 0.557145 | 5.3:-22633807 | None:intergenic |
| TTACAACTCAAGAACCTGAC+AGG | 0.557772 | 5.3:+22635218 | MS.gene29205:CDS |
| TCAATGCTAGTGATATATGA+AGG | 0.561811 | 5.3:-22635572 | None:intergenic |
| GCAGAAATTGCTAGGCCAGA+AGG | 0.563796 | 5.3:-22633660 | None:intergenic |
| TTAGGCAAGCAGAAATTGCT+AGG | 0.575098 | 5.3:-22633668 | None:intergenic |
| TGGGTGTGGTAATTCAGGAA+TGG | 0.575916 | 5.3:+22634154 | MS.gene29205:CDS |
| TGCTTACCCGAATCATTGGA+AGG | 0.581917 | 5.3:+22635918 | MS.gene29205:CDS |
| CTTACCCGAATCATTGGAAG+GGG | 0.590121 | 5.3:+22635920 | MS.gene29205:CDS |
| CTGTCAAGGAGAGGCTTGTG+GGG | 0.591890 | 5.3:+22635967 | MS.gene29205:CDS |
| GCTTACCCGAATCATTGGAA+GGG | 0.607769 | 5.3:+22635919 | MS.gene29205:CDS |
| AAACAAAGAACACTATAGAA+GGG | 0.614313 | 5.3:+22633967 | MS.gene29205:CDS |
| ACTGTATAACTTTGAAGGAG+AGG | 0.614697 | 5.3:+22634070 | MS.gene29205:CDS |
| GGGAGTCAAAATGGATGCAG+AGG | 0.615192 | 5.3:+22635987 | MS.gene29205:CDS |
| TGTACTGTGCAGGACTGTCA+AGG | 0.617174 | 5.3:+22635953 | MS.gene29205:CDS |
| AACTGTCGAAAAGATTAAGG+AGG | 0.618608 | 5.3:+22635265 | MS.gene29205:CDS |
| GTAGAGAAATGATTCACCAA+GGG | 0.627830 | 5.3:+22635078 | MS.gene29205:CDS |
| ACGAGGTTAGAAACAAATGG+AGG | 0.631858 | 5.3:+22633940 | MS.gene29205:CDS |
| ACTGTCGAAAAGATTAAGGA+GGG | 0.634444 | 5.3:+22635266 | MS.gene29205:CDS |
| GCCACTGGTGAAAATAGTGA+AGG | 0.638559 | 5.3:+22634026 | MS.gene29205:CDS |
| AGCAAAACTCACTAGCCAAG+TGG | 0.645422 | 5.3:-22633779 | None:intergenic |
| CGAGGTTAGAAACAAATGGA+GGG | 0.652960 | 5.3:+22633941 | MS.gene29205:CDS |
| GTATAACTTTGAAGGAGAGG+TGG | 0.656097 | 5.3:+22634073 | MS.gene29205:CDS |
| TGATCGTCTAAACCTCCACT+TGG | 0.657123 | 5.3:+22633764 | MS.gene29205:CDS |
| GACTTCGAACGACAATAGAT+GGG | 0.661642 | 5.3:-22634211 | None:intergenic |
| GGATGCAGAGGCAATTGCTG+AGG | 0.662632 | 5.3:+22635999 | MS.gene29205:CDS |
| ACAAAAGCATAACTAATGGG+TGG | 0.664351 | 5.3:+22635663 | MS.gene29205:CDS |
| AGCACCTACAATTACAACTG+TGG | 0.666119 | 5.3:-22633634 | None:intergenic |
| GATTCACCAAGGGATGCGAA+TGG | 0.671019 | 5.3:+22635088 | MS.gene29205:CDS |
| AGTAGAGAAATGATTCACCA+AGG | 0.673155 | 5.3:+22635077 | MS.gene29205:CDS |
| AAAACTCACTAGCCAAGTGG+AGG | 0.678012 | 5.3:-22633776 | None:intergenic |
| TGTGCAGGACTGTCAAGGAG+AGG | 0.680971 | 5.3:+22635958 | MS.gene29205:CDS |
| TCAACTGCGCGACAATAGTG+AGG | 0.688440 | 5.3:-22633903 | None:intergenic |
| GAACCTGACAGGAAAGTCTG+CGG | 0.722899 | 5.3:+22635229 | MS.gene29205:CDS |
| TGAGTCTGCTAAGTATGACG+AGG | 0.735668 | 5.3:+22633923 | MS.gene29205:CDS |
| TTACCCGAATCATTGGAAGG+GGG | 0.754350 | 5.3:+22635921 | MS.gene29205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTAAATTATCTATAA+AGG | - | chr5.3:22635382-22635401 | None:intergenic | 10.0% |
| !! | AATTATGAAAATTAAAAGTT+TGG | - | chr5.3:22636032-22636051 | None:intergenic | 10.0% |
| !! | CATAATCATAATTAAGATAA+AGG | + | chr5.3:22635707-22635726 | MS.gene29205:intron | 15.0% |
| !! | TTATAATATGTTCAAAACTA+TGG | + | chr5.3:22635492-22635511 | MS.gene29205:intron | 15.0% |
| !!! | ATCGATATTATACAATATTT+TGG | + | chr5.3:22634573-22634592 | MS.gene29205:intron | 15.0% |
| !!! | GTTTTTTTTTTTAACAATGT+TGG | + | chr5.3:22634853-22634872 | MS.gene29205:intron | 15.0% |
| !!! | TTATTTGATGTATTTTTCAA+AGG | + | chr5.3:22635855-22635874 | MS.gene29205:intron | 15.0% |
| !! | AATAACTTGAAGAATTAGAA+AGG | - | chr5.3:22635824-22635843 | None:intergenic | 20.0% |
| !! | AATGTAAGTTGTATATTGTA+AGG | - | chr5.3:22635755-22635774 | None:intergenic | 20.0% |
| !! | AATTTAAATCTGTATACCTA+AGG | + | chr5.3:22634292-22634311 | MS.gene29205:intron | 20.0% |
| !! | ACAATTAAATTGTCTATGTA+TGG | - | chr5.3:22634332-22634351 | None:intergenic | 20.0% |
| !! | ATAACTTGAAGAATTAGAAA+GGG | - | chr5.3:22635823-22635842 | None:intergenic | 20.0% |
| !! | ATATATTGAAAAAGAATAGC+TGG | - | chr5.3:22634497-22634516 | None:intergenic | 20.0% |
| !! | ATGTAAGTTGTATATTGTAA+GGG | - | chr5.3:22635754-22635773 | None:intergenic | 20.0% |
| !! | GAGTTAGAAATATTATTTAC+CGG | - | chr5.3:22634236-22634255 | None:intergenic | 20.0% |
| !! | TTCAAAATATGAATCAAAAG+AGG | + | chr5.3:22634121-22634140 | MS.gene29205:CDS | 20.0% |
| !!! | GGAAGTATGAATAAATTTTT+TGG | + | chr5.3:22634658-22634677 | MS.gene29205:intron | 20.0% |
| !!! | GGCTAATTTTTTTTTTTTGA+AGG | + | chr5.3:22634637-22634656 | MS.gene29205:intron | 20.0% |
| !!! | TTTTGTGTGCTTTTTTTTAT+TGG | + | chr5.3:22635789-22635808 | MS.gene29205:intron | 20.0% |
| ! | AAACAAAGAACACTATAGAA+GGG | + | chr5.3:22633967-22633986 | MS.gene29205:CDS | 25.0% |
| ! | AAATATGCTCTTAATGAGAA+AGG | + | chr5.3:22635883-22635902 | MS.gene29205:CDS | 25.0% |
| ! | AATATGCTCTTAATGAGAAA+GGG | + | chr5.3:22635884-22635903 | MS.gene29205:CDS | 25.0% |
| ! | ACATGATCATCATAAAAACA+GGG | + | chr5.3:22634813-22634832 | MS.gene29205:intron | 25.0% |
| ! | CACTCTAAATATTACAAATC+TGG | + | chr5.3:22634098-22634117 | MS.gene29205:CDS | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | - | chr5.3:22633863-22633882 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAAGTTGTATT+TGG | + | chr5.3:22635593-22635612 | MS.gene29205:CDS | 25.0% |
| ! | TACATGATCATCATAAAAAC+AGG | + | chr5.3:22634812-22634831 | MS.gene29205:intron | 25.0% |
| ! | TTATCGGCAAAACTAAAATA+TGG | + | chr5.3:22635152-22635171 | MS.gene29205:CDS | 25.0% |
| !! | ATATGAATCAAAAGAGGTTT+TGG | + | chr5.3:22634127-22634146 | MS.gene29205:CDS | 25.0% |
| !! | ATCTGAGATTGAATTATTAG+TGG | + | chr5.3:22634614-22634633 | MS.gene29205:intron | 25.0% |
| !! | TAAAGACAATATGTGTTTTG+TGG | + | chr5.3:22635013-22635032 | MS.gene29205:intron | 25.0% |
| !! | TCTGAGATTGAATTATTAGT+GGG | + | chr5.3:22634615-22634634 | MS.gene29205:intron | 25.0% |
| ATATAGATGTCGAACTAGAT+AGG | - | chr5.3:22634543-22634562 | None:intergenic | 30.0% | |
| ATGTCACACACTTACTTTAA+TGG | - | chr5.3:22635523-22635542 | None:intergenic | 30.0% | |
| CTGAGATTGAATTATTAGTG+GGG | + | chr5.3:22634616-22634635 | MS.gene29205:intron | 30.0% | |
| GAAACAAAGAACACTATAGA+AGG | + | chr5.3:22633966-22633985 | MS.gene29205:CDS | 30.0% | |
| GGAGATTTATATGTATCCTT+AGG | - | chr5.3:22634311-22634330 | None:intergenic | 30.0% | |
| GGATGCTATCATTACTTTAT+CGG | + | chr5.3:22635136-22635155 | MS.gene29205:CDS | 30.0% | |
| GTATTGAAGGAATTGGTATT+TGG | - | chr5.3:22633850-22633869 | None:intergenic | 30.0% | |
| TCAATGCTAGTGATATATGA+AGG | - | chr5.3:22635575-22635594 | None:intergenic | 30.0% | |
| TGCTTATGATCTCTATAACT+CGG | + | chr5.3:22634181-22634200 | MS.gene29205:CDS | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | - | chr5.3:22633857-22633876 | None:intergenic | 30.0% | |
| ! | GCTACAAAAGCATAACTAAT+GGG | + | chr5.3:22635660-22635679 | MS.gene29205:CDS | 30.0% |
| !! | AGTGAGGTTTTATGTTGAAA+TGG | - | chr5.3:22633890-22633909 | None:intergenic | 30.0% |
| !! | ATATTTTCCTGTTGCTATTG+TGG | + | chr5.3:22635115-22635134 | MS.gene29205:CDS | 30.0% |
| !!! | AATATTTTGGTGTGTTAACC+AGG | + | chr5.3:22634586-22634605 | MS.gene29205:intron | 30.0% |
| !!! | ATATTTTGGTGTGTTAACCA+GGG | + | chr5.3:22634587-22634606 | MS.gene29205:intron | 30.0% |
| AAAATGCTTACCCGAATCAT+TGG | + | chr5.3:22635914-22635933 | MS.gene29205:CDS | 35.0% | |
| AACTGTCGAAAAGATTAAGG+AGG | + | chr5.3:22635265-22635284 | MS.gene29205:CDS | 35.0% | |
| ACTGTCGAAAAGATTAAGGA+GGG | + | chr5.3:22635266-22635285 | MS.gene29205:CDS | 35.0% | |
| AGGGATATTGGAAGTTTATG+AGG | + | chr5.3:22633986-22634005 | MS.gene29205:CDS | 35.0% | |
| AGTAGAGAAATGATTCACCA+AGG | + | chr5.3:22635077-22635096 | MS.gene29205:CDS | 35.0% | |
| AGTTGTAAAGGTCCCAATTT+GGG | - | chr5.3:22635206-22635225 | None:intergenic | 35.0% | |
| ATGACGAGGTTAGAAACAAA+TGG | + | chr5.3:22633937-22633956 | MS.gene29205:CDS | 35.0% | |
| ATGATTGTTGTGCTTCTCTT+TGG | + | chr5.3:22633727-22633746 | MS.gene29205:CDS | 35.0% | |
| ATTAATCATCTACACACACG+AGG | - | chr5.3:22635337-22635356 | None:intergenic | 35.0% | |
| GAACACTATAGAAGGGATAT+TGG | + | chr5.3:22633974-22633993 | MS.gene29205:CDS | 35.0% | |
| GAAGGAATTGGTATTTGGAT+AGG | - | chr5.3:22633845-22633864 | None:intergenic | 35.0% | |
| GAATCCACAGTTGTAATTGT+AGG | + | chr5.3:22633630-22633649 | MS.gene29205:CDS | 35.0% | |
| GAATTGGTATTTGGATAGGT+AGG | - | chr5.3:22633841-22633860 | None:intergenic | 35.0% | |
| GATTAAGGAGGGATCTATAA+AGG | + | chr5.3:22635277-22635296 | MS.gene29205:CDS | 35.0% | |
| GCTTATGATCTCTATAACTC+GGG | + | chr5.3:22634182-22634201 | MS.gene29205:CDS | 35.0% | |
| GTAAGTGTGTGACATAACTT+TGG | + | chr5.3:22635528-22635547 | MS.gene29205:intron | 35.0% | |
| GTAGAGAAATGATTCACCAA+GGG | + | chr5.3:22635078-22635097 | MS.gene29205:CDS | 35.0% | |
| GTGTGACATAACTTTGGATT+TGG | + | chr5.3:22635534-22635553 | MS.gene29205:intron | 35.0% | |
| TATATATGTGTGTGTGTGTG+TGG | - | chr5.3:22634792-22634811 | None:intergenic | 35.0% | |
| TGGAACTGTCGAAAAGATTA+AGG | + | chr5.3:22635262-22635281 | MS.gene29205:CDS | 35.0% | |
| ! | ACAAAAGCATAACTAATGGG+TGG | + | chr5.3:22635663-22635682 | MS.gene29205:CDS | 35.0% |
| ! | ACTGTATAACTTTGAAGGAG+AGG | + | chr5.3:22634070-22634089 | MS.gene29205:CDS | 35.0% |
| ! | GGCTACAAAAGCATAACTAA+TGG | + | chr5.3:22635659-22635678 | MS.gene29205:CDS | 35.0% |
| ! | TATGGTGATTTGTCCAAGTA+CGG | + | chr5.3:22635170-22635189 | MS.gene29205:CDS | 35.0% |
| !! | CAAAAGAGGTTTTGGTAGTT+GGG | + | chr5.3:22634135-22634154 | MS.gene29205:CDS | 35.0% |
| !! | TCAAAAGAGGTTTTGGTAGT+TGG | + | chr5.3:22634134-22634153 | MS.gene29205:CDS | 35.0% |
| !!! | TATTTTGGTGTGTTAACCAG+GGG | + | chr5.3:22634588-22634607 | MS.gene29205:intron | 35.0% |
| !!! | TGATTCGGGTAAGCATTTTT+TGG | - | chr5.3:22635913-22635932 | None:intergenic | 35.0% |
| AAGTCTGCGGTTATTGATGT+TGG | + | chr5.3:22635242-22635261 | MS.gene29205:CDS | 40.0% | |
| ACAGTTGTAATTGTAGGTGC+TGG | + | chr5.3:22633636-22633655 | MS.gene29205:CDS | 40.0% | |
| ACGAGGTTAGAAACAAATGG+AGG | + | chr5.3:22633940-22633959 | MS.gene29205:CDS | 40.0% | |
| ACTTTGGATTTGGATGTCAC+AGG | + | chr5.3:22635544-22635563 | MS.gene29205:intron | 40.0% | |
| AGCACCTACAATTACAACTG+TGG | - | chr5.3:22633637-22633656 | None:intergenic | 40.0% | |
| ATAGCATCCACAATAGCAAC+AGG | - | chr5.3:22635125-22635144 | None:intergenic | 40.0% | |
| ATCTATTGTCGTTCGAAGTC+CGG | + | chr5.3:22634214-22634233 | MS.gene29205:CDS | 40.0% | |
| ATTGTTGTGCTTCTCTTTGG+AGG | + | chr5.3:22633730-22633749 | MS.gene29205:CDS | 40.0% | |
| CCTGGACTGTATAACTTTGA+AGG | + | chr5.3:22634065-22634084 | MS.gene29205:CDS | 40.0% | |
| CCTTCAAAGTTATACAGTCC+AGG | - | chr5.3:22634068-22634087 | None:intergenic | 40.0% | |
| CGAGGTTAGAAACAAATGGA+GGG | + | chr5.3:22633941-22633960 | MS.gene29205:CDS | 40.0% | |
| GACTTCGAACGACAATAGAT+GGG | - | chr5.3:22634214-22634233 | None:intergenic | 40.0% | |
| GAGTTGTAAAGGTCCCAATT+TGG | - | chr5.3:22635207-22635226 | None:intergenic | 40.0% | |
| GGGATTTATCGTCCCAAATT+GGG | + | chr5.3:22635191-22635210 | MS.gene29205:CDS | 40.0% | |
| GGTATTTGGATAGGTAGGTT+GGG | - | chr5.3:22633836-22633855 | None:intergenic | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | + | chr5.3:22634047-22634066 | MS.gene29205:CDS | 40.0% | |
| TGGTATTTGGATAGGTAGGT+TGG | - | chr5.3:22633837-22633856 | None:intergenic | 40.0% | |
| TTACAACTCAAGAACCTGAC+AGG | + | chr5.3:22635218-22635237 | MS.gene29205:CDS | 40.0% | |
| TTAGGCAAGCAGAAATTGCT+AGG | - | chr5.3:22633671-22633690 | None:intergenic | 40.0% | |
| TTATACAGTCCAGGCACATT+AGG | - | chr5.3:22634059-22634078 | None:intergenic | 40.0% | |
| ! | ACCTTCACTATTTTCACCAG+TGG | - | chr5.3:22634030-22634049 | None:intergenic | 40.0% |
| ! | ATGGTGATTTGTCCAAGTAC+GGG | + | chr5.3:22635171-22635190 | MS.gene29205:CDS | 40.0% |
| ! | CATAACTAATGGGTGGCTTA+AGG | + | chr5.3:22635670-22635689 | MS.gene29205:CDS | 40.0% |
| ! | GTATAACTTTGAAGGAGAGG+TGG | + | chr5.3:22634073-22634092 | MS.gene29205:CDS | 40.0% |
| ! | GTCAGGTTCTTGAGTTGTAA+AGG | - | chr5.3:22635218-22635237 | None:intergenic | 40.0% |
| !! | GAGAGATGCAGTTTTGTGTT+AGG | - | chr5.3:22633689-22633708 | None:intergenic | 40.0% |
| AAAACTCACTAGCCAAGTGG+AGG | - | chr5.3:22633779-22633798 | None:intergenic | 45.0% | |
| AAGTTTCTTGTGATCGCCAC+TGG | + | chr5.3:22634011-22634030 | MS.gene29205:CDS | 45.0% | |
| AATCATTGGAAGGGGGATCA+TGG | + | chr5.3:22635928-22635947 | MS.gene29205:CDS | 45.0% | |
| AGCAAAACTCACTAGCCAAG+TGG | - | chr5.3:22633782-22633801 | None:intergenic | 45.0% | |
| ATTTCACCATTCGCATCCCT+TGG | - | chr5.3:22635097-22635116 | None:intergenic | 45.0% | |
| CGGGATTTATCGTCCCAAAT+TGG | + | chr5.3:22635190-22635209 | MS.gene29205:CDS | 45.0% | |
| CTTACCCGAATCATTGGAAG+GGG | + | chr5.3:22635920-22635939 | MS.gene29205:CDS | 45.0% | |
| GCCACTGGTGAAAATAGTGA+AGG | + | chr5.3:22634026-22634045 | MS.gene29205:CDS | 45.0% | |
| GCTTACCCGAATCATTGGAA+GGG | + | chr5.3:22635919-22635938 | MS.gene29205:CDS | 45.0% | |
| GGACTTCGAACGACAATAGA+TGG | - | chr5.3:22634215-22634234 | None:intergenic | 45.0% | |
| GTAGTTGGGTGTGGTAATTC+AGG | + | chr5.3:22634149-22634168 | MS.gene29205:CDS | 45.0% | |
| TGAGTCTGCTAAGTATGACG+AGG | + | chr5.3:22633923-22633942 | MS.gene29205:CDS | 45.0% | |
| TGATCCCCCTTCCAATGATT+CGG | - | chr5.3:22635928-22635947 | None:intergenic | 45.0% | |
| TGATCGTCTAAACCTCCACT+TGG | + | chr5.3:22633764-22633783 | MS.gene29205:CDS | 45.0% | |
| TGCTTACCCGAATCATTGGA+AGG | + | chr5.3:22635918-22635937 | MS.gene29205:CDS | 45.0% | |
| TGGGTGTGGTAATTCAGGAA+TGG | + | chr5.3:22634154-22634173 | MS.gene29205:CDS | 45.0% | |
| TTACCCGAATCATTGGAAGG+GGG | + | chr5.3:22635921-22635940 | MS.gene29205:CDS | 45.0% | |
| ! | GATCATGGATTGTACTGTGC+AGG | + | chr5.3:22635943-22635962 | MS.gene29205:CDS | 45.0% |
| !! | AATATAAAAAAAAATATGTA+TGG | + | chr5.3:22634984-22635003 | MS.gene29205:intron | 5.0% |
| !! | TATTCAAAAAATAATAATAA+TGG | - | chr5.3:22634894-22634913 | None:intergenic | 5.0% |
| ACTGTCAAGGAGAGGCTTGT+GGG | + | chr5.3:22635966-22635985 | MS.gene29205:CDS | 50.0% | |
| AGGCTTGTGGGGAGTCAAAA+TGG | + | chr5.3:22635978-22635997 | MS.gene29205:CDS | 50.0% | |
| GAACCTGACAGGAAAGTCTG+CGG | + | chr5.3:22635229-22635248 | MS.gene29205:CDS | 50.0% | |
| GATCCCCCTTCCAATGATTC+GGG | - | chr5.3:22635927-22635946 | None:intergenic | 50.0% | |
| GATTCACCAAGGGATGCGAA+TGG | + | chr5.3:22635088-22635107 | MS.gene29205:CDS | 50.0% | |
| GCAGAAATTGCTAGGCCAGA+AGG | - | chr5.3:22633663-22633682 | None:intergenic | 50.0% | |
| GGGACGATAAATCCCGTACT+TGG | - | chr5.3:22635186-22635205 | None:intergenic | 50.0% | |
| GGGAGTCAAAATGGATGCAG+AGG | + | chr5.3:22635987-22636006 | MS.gene29205:CDS | 50.0% | |
| TAACCGCAGACTTTCCTGTC+AGG | - | chr5.3:22635235-22635254 | None:intergenic | 50.0% | |
| TCAACTGCGCGACAATAGTG+AGG | - | chr5.3:22633906-22633925 | None:intergenic | 50.0% | |
| TGTACTGTGCAGGACTGTCA+AGG | + | chr5.3:22635953-22635972 | MS.gene29205:CDS | 50.0% | |
| ! | GATGCGATCGTTTTCGCAAC+TGG | + | chr5.3:22635638-22635657 | MS.gene29205:CDS | 50.0% |
| ! | TTTGGTGTGTTAACCAGGGG+CGG | + | chr5.3:22634591-22634610 | MS.gene29205:intron | 50.0% |
| !! | ATTGTAGGTGCTGGTCCTTC+TGG | + | chr5.3:22633645-22633664 | MS.gene29205:CDS | 50.0% |
| !! | GAGGTTTTGGTAGTTGGGTG+TGG | + | chr5.3:22634140-22634159 | MS.gene29205:CDS | 50.0% |
| CTGTCAAGGAGAGGCTTGTG+GGG | + | chr5.3:22635967-22635986 | MS.gene29205:CDS | 55.0% | |
| GACTGTCAAGGAGAGGCTTG+TGG | + | chr5.3:22635965-22635984 | MS.gene29205:CDS | 55.0% | |
| GGATGCAGAGGCAATTGCTG+AGG | + | chr5.3:22635999-22636018 | MS.gene29205:CDS | 55.0% | |
| TGTGCAGGACTGTCAAGGAG+AGG | + | chr5.3:22635958-22635977 | MS.gene29205:CDS | 55.0% | |
| TTCAATCTCAGATCCGCCCC+TGG | - | chr5.3:22634607-22634626 | None:intergenic | 55.0% | |
| ! | GATAGGTAGGTTGGGCCTGA+GGG | - | chr5.3:22633828-22633847 | None:intergenic | 55.0% |
| TGAGGGTGGGTGAGGCATGA+GGG | - | chr5.3:22633811-22633830 | None:intergenic | 60.0% | |
| ! | GGATAGGTAGGTTGGGCCTG+AGG | - | chr5.3:22633829-22633848 | None:intergenic | 60.0% |
| CTCATGCCTCACCCACCCTC+AGG | + | chr5.3:22633810-22633829 | MS.gene29205:CDS | 65.0% | |
| CTGAGGGTGGGTGAGGCATG+AGG | - | chr5.3:22633812-22633831 | None:intergenic | 65.0% | |
| GAGGGTGGGTGAGGCATGAG+GGG | - | chr5.3:22633810-22633829 | None:intergenic | 65.0% | |
| ! | AGGTAGGTTGGGCCTGAGGG+TGG | - | chr5.3:22633825-22633844 | None:intergenic | 65.0% |
| ! | GGTAGGTTGGGCCTGAGGGT+GGG | - | chr5.3:22633824-22633843 | None:intergenic | 65.0% |
| GTTGGGCCTGAGGGTGGGTG+AGG | - | chr5.3:22633819-22633838 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 22633624 | 22636053 | 22633624 | ID=MS.gene29205 |
| chr5.3 | mRNA | 22633624 | 22636053 | 22633624 | ID=MS.gene29205.t1;Parent=MS.gene29205 |
| chr5.3 | exon | 22633624 | 22634235 | 22633624 | ID=MS.gene29205.t1.exon1;Parent=MS.gene29205.t1 |
| chr5.3 | CDS | 22633624 | 22634235 | 22633624 | ID=cds.MS.gene29205.t1;Parent=MS.gene29205.t1 |
| chr5.3 | exon | 22635065 | 22635298 | 22635065 | ID=MS.gene29205.t1.exon2;Parent=MS.gene29205.t1 |
| chr5.3 | CDS | 22635065 | 22635298 | 22635065 | ID=cds.MS.gene29205.t1;Parent=MS.gene29205.t1 |
| chr5.3 | exon | 22635566 | 22635691 | 22635566 | ID=MS.gene29205.t1.exon3;Parent=MS.gene29205.t1 |
| chr5.3 | CDS | 22635566 | 22635691 | 22635566 | ID=cds.MS.gene29205.t1;Parent=MS.gene29205.t1 |
| chr5.3 | exon | 22635877 | 22636053 | 22635877 | ID=MS.gene29205.t1.exon4;Parent=MS.gene29205.t1 |
| chr5.3 | CDS | 22635877 | 22636053 | 22635877 | ID=cds.MS.gene29205.t1;Parent=MS.gene29205.t1 |
| Gene Sequence |
| Protein sequence |
