AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29428


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 103 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCCACATAAAGCTTTC+AGG 0.143175 3.4:+37761329 None:intergenic
GAAAACGATCATAATCTTAT+TGG 0.203863 3.4:-37758202 MS.gene29428:CDS
AAGCTTGGGGAAGGCGGTTT+TGG 0.213522 3.4:-37759121 MS.gene29428:CDS
CAAATAATGGTTGTTCTATC+TGG 0.216756 3.4:-37760737 MS.gene29428:CDS
TTGGTAAATCTTCCATATTT+TGG 0.219811 3.4:+37761094 None:intergenic
CACATAAAGCTTTCAGGGTT+TGG 0.224626 3.4:+37761335 None:intergenic
TCAATGTTTAGATGGGTTTA+AGG 0.226573 3.4:-37760991 MS.gene29428:CDS
TTCATCAAGATTCAAGATTA+AGG 0.255015 3.4:-37758563 MS.gene29428:CDS
CGAATGGACGCTTCATATAT+TGG 0.255409 3.4:-37760660 MS.gene29428:intron
CCTATGTGTCAATGTTTAGA+TGG 0.257578 3.4:-37760999 MS.gene29428:CDS
CCTCGATCTAGTGGAATAAT+TGG 0.258846 3.4:-37761269 MS.gene29428:CDS
GTTTCCTTGCAGCGGTTATA+TGG 0.274988 3.4:-37758338 MS.gene29428:intron
GACTCAACTGGAACAAATAA+TGG 0.280925 3.4:-37760750 MS.gene29428:CDS
TACAATGTCTGTGGGGAAAA+TGG 0.288503 3.4:-37761044 MS.gene29428:CDS
CCCTTCGTCAACGCCTCATT+TGG 0.299797 3.4:-37761127 MS.gene29428:CDS
TGCCAGATACTACACATTCT+TGG 0.307708 3.4:-37760851 MS.gene29428:CDS
AACTATCTTGTGGTAAGATT+TGG 0.307810 3.4:+37761075 None:intergenic
AACCGACAATACTACTGTTT+TGG 0.308892 3.4:+37760224 None:intergenic
CAACAACTTTAACAAGATTT+CGG 0.312756 3.4:+37758856 None:intergenic
AATTGGGATGATCCATCTTT+AGG 0.313612 3.4:-37761386 MS.gene29428:CDS
CGAAATCTTGTTAAAGTTGT+TGG 0.318139 3.4:-37758855 MS.gene29428:CDS
GGATTCCAGAATCCAAAATA+TGG 0.331273 3.4:-37761106 MS.gene29428:CDS
AATCCATCAGTGGCATATTC+TGG 0.347641 3.4:+37758313 None:intergenic
TTTCGAGTAAATTGTTAGAT+TGG 0.359253 3.4:-37758635 MS.gene29428:CDS
CATAAATTTACCTTGTATAC+TGG 0.366690 3.4:+37759097 None:intergenic
ATCCAAGAATGTGTAGTATC+TGG 0.380469 3.4:+37760849 None:intergenic
GATGGGTTTAAAAGAATTGT+TGG 0.392061 3.4:-37760882 MS.gene29428:CDS
TTGCTGTCAAAAGGCTTTCA+AGG 0.394328 3.4:-37758941 MS.gene29428:CDS
AAATCAGATGTATTTAGCTT+TGG 0.395433 3.4:-37758280 MS.gene29428:CDS
ATAACAAAGGCAAAGTATAA+AGG 0.397662 3.4:-37760150 MS.gene29428:intron
TCTCTTATGACAACAAGCTT+GGG 0.403222 3.4:-37759135 MS.gene29428:CDS
TACTCAAGTTTAGACTCAAC+TGG 0.404191 3.4:-37760762 MS.gene29428:CDS
AAAAGGCTTTCAAGGAGTTC+TGG 0.405912 3.4:-37758933 MS.gene29428:CDS
GATGTGTGCGTAATGGTAAT+TGG 0.406785 3.4:-37760926 MS.gene29428:CDS
CTTTCCACATAAAGCTTTCA+GGG 0.432907 3.4:+37761330 None:intergenic
AGGTGAGCTTTCTTCAGCTA+TGG 0.435172 3.4:-37761366 MS.gene29428:CDS
AAGGCTCAACAAAACTCTAT+AGG 0.438625 3.4:-37761310 MS.gene29428:CDS
TTCTCTTATGACAACAAGCT+TGG 0.439774 3.4:-37759136 MS.gene29428:CDS
ATGGGTTTAAAAGAATTGTT+GGG 0.448622 3.4:-37760881 MS.gene29428:CDS
TTGTTGTTAGAAATTATTAG+TGG 0.452086 3.4:-37758253 MS.gene29428:CDS
GACAAGAAATTGCTGTCAAA+AGG 0.458542 3.4:-37758950 MS.gene29428:CDS
TTCAGTAGTCCTTGTGATGT+TGG 0.459202 3.4:-37760190 MS.gene29428:CDS
TGCCTTTGTTATATAAATGT+AGG 0.466634 3.4:+37760161 None:intergenic
AATGGTTGTTCTATCTGGTT+TGG 0.470216 3.4:-37760732 MS.gene29428:CDS
CTATGTGTCAATGTTTAGAT+GGG 0.472714 3.4:-37760998 MS.gene29428:CDS
TATTGTAGCTTGATCAAAGA+TGG 0.476869 3.4:+37759177 None:intergenic
GAAGAAAGCTCACCTAAAGA+TGG 0.496500 3.4:+37761374 None:intergenic
TCCATTGCATTCCACTGTTG+TGG 0.504146 3.4:+37760960 None:intergenic
GAGTTCTGGACAAGGACAAA+AGG 0.504884 3.4:-37758919 MS.gene29428:CDS
GGGAGAACAAACAGAATAGT+TGG 0.513456 3.4:-37758432 MS.gene29428:CDS
GTTGTTGGTTGTTGTATCGA+AGG 0.514309 3.4:-37758840 MS.gene29428:CDS
TACCAAAACAGTAGTATTGT+CGG 0.526173 3.4:-37760226 MS.gene29428:CDS
TGGATTCTGGAATCCAAATG+AGG 0.534031 3.4:+37761114 None:intergenic
TACCAGGAATGAAGACTGGA+TGG 0.536914 3.4:-37761451 None:intergenic
GTAATGGTAATTGGAGTTGT+GGG 0.537345 3.4:-37760917 MS.gene29428:CDS
AACAGTGGAATGCAATGGAC+TGG 0.537795 3.4:-37760956 MS.gene29428:CDS
CGTAATGGTAATTGGAGTTG+TGG 0.550967 3.4:-37760918 MS.gene29428:CDS
TTGAGAGGCGTTTAACTGCA+TGG 0.554118 3.4:-37761412 MS.gene29428:CDS
AATGACACTTGAAGATTGCA+AGG 0.556505 3.4:-37760817 MS.gene29428:CDS
CAAACCCTGAAAGCTTTATG+TGG 0.557196 3.4:-37761334 MS.gene29428:CDS
CCATCTAAACATTGACACAT+AGG 0.557554 3.4:+37760999 None:intergenic
CCTGAAAGCTTTATGTGGAA+AGG 0.563846 3.4:-37761329 MS.gene29428:CDS
GCACCAGAATATGCCACTGA+TGG 0.564364 3.4:-37758316 MS.gene29428:CDS
CACCTACATTTATATAACAA+AGG 0.565405 3.4:-37760163 MS.gene29428:CDS
CTAGATCGAGGACCGGTCCA+TGG 0.566135 3.4:+37761281 None:intergenic
AAAAGATTTATATGTTCGAA+TGG 0.566797 3.4:-37760676 MS.gene29428:CDS
CCAAATGAGGCGTTGACGAA+GGG 0.567310 3.4:+37761127 None:intergenic
TGGACCGGTCCTCGATCTAG+TGG 0.573026 3.4:-37761278 MS.gene29428:CDS
ATATTACCAGGAATGAAGAC+TGG 0.576953 3.4:-37761455 None:intergenic
TCCAAATGAGGCGTTGACGA+AGG 0.582229 3.4:+37761126 None:intergenic
TTTGGCTTAGCTAGAATGTG+TGG 0.582884 3.4:-37758471 MS.gene29428:CDS
TATGACAACAAGCTTGGGGA+AGG 0.585345 3.4:-37759130 MS.gene29428:CDS
ATTGTAGCTTGATCAAAGAT+GGG 0.590904 3.4:+37759178 None:intergenic
GACAACAAGCTTGGGGAAGG+CGG 0.594341 3.4:-37759127 MS.gene29428:CDS
TATAGGACAGCACCATGGAC+CGG 0.594545 3.4:-37761293 MS.gene29428:CDS
AGGCGAAATCGCCACAACAG+TGG 0.598854 3.4:-37760971 MS.gene29428:CDS
CTCTTATGACAACAAGCTTG+GGG 0.601135 3.4:-37759134 MS.gene29428:CDS
CACACTCAAGAATAGTTCTG+TGG 0.603411 3.4:-37761180 MS.gene29428:CDS
TATAGAAAATAATCCATCAG+TGG 0.612878 3.4:+37758303 None:intergenic
TGTGGAGGTGATCAAATCGA+GGG 0.614714 3.4:-37758453 MS.gene29428:CDS
AGGTGAATGCCAACATCACA+AGG 0.617305 3.4:+37760181 None:intergenic
ACAGGTGGATGTGTGCGTAA+TGG 0.626557 3.4:-37760933 MS.gene29428:CDS
GTGATGCATACAATGTCTGT+GGG 0.630917 3.4:-37761052 MS.gene29428:CDS
GCCACAACAGTGGAATGCAA+TGG 0.631854 3.4:-37760961 MS.gene29428:CDS
CTTTCAAGGAGTTCTGGACA+AGG 0.632091 3.4:-37758927 MS.gene29428:CDS
TGATCAAGCTACAATACGCA+AGG 0.632201 3.4:-37759170 MS.gene29428:CDS
TGGAATGCAATGGACTGGAC+AGG 0.635110 3.4:-37760951 MS.gene29428:CDS
AGAAAATAGAGAAGATCACA+AGG 0.636320 3.4:-37759243 MS.gene29428:CDS
GATCTGAGAGTTTCACCAAG+TGG 0.644954 3.4:-37760699 MS.gene29428:CDS
TATGCATCACAACTATCTTG+TGG 0.645355 3.4:+37761065 None:intergenic
TATTCCACTAGATCGAGGAC+CGG 0.646406 3.4:+37761274 None:intergenic
ATATAGGGTACATTGCTCGA+TGG 0.650298 3.4:-37758972 MS.gene29428:intron
GTGTGGAGGTGATCAAATCG+AGG 0.653014 3.4:-37758454 MS.gene29428:CDS
ACCAGGAATGAAGACTGGAT+GGG 0.653964 3.4:-37761450 None:intergenic
GGCTTAGCTAGAATGTGTGG+AGG 0.656486 3.4:-37758468 MS.gene29428:CDS
AATGCAATGGACTGGACAGG+TGG 0.659695 3.4:-37760948 MS.gene29428:CDS
TGTGATGCATACAATGTCTG+TGG 0.662722 3.4:-37761053 MS.gene29428:CDS
AACTCTATAGGACAGCACCA+TGG 0.671553 3.4:-37761298 MS.gene29428:CDS
CCAATTATTCCACTAGATCG+AGG 0.678881 3.4:+37761269 None:intergenic
GTTTGTCAACAATGAAGACG+AGG 0.691153 3.4:-37761216 MS.gene29428:CDS
GTGGAGGTGATCAAATCGAG+GGG 0.710704 3.4:-37758452 MS.gene29428:CDS
TAATGGTAATTGGAGTTGTG+GGG 0.729152 3.4:-37760916 MS.gene29428:CDS
TGATGCATACAATGTCTGTG+GGG 0.783493 3.4:-37761051 MS.gene29428:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAACATCTGAAAATTTAT+TGG - chr3.4:37761280-37761299 MS.gene29428:CDS 15.0%
!!! TGCAATTTTATTAGAATAAA+AGG - chr3.4:37759771-37759790 MS.gene29428:intron 15.0%
!! AAAAGATTTATATGTTCGAA+TGG - chr3.4:37758967-37758986 MS.gene29428:CDS 20.0%
!! AACTCCATATAATGATAATA+AGG - chr3.4:37759843-37759862 MS.gene29428:intron 20.0%
!! ACAAACTCAAAATTAAAAAG+TGG + chr3.4:37758413-37758432 None:intergenic 20.0%
!! ACTCCATATAATGATAATAA+GGG - chr3.4:37759844-37759863 MS.gene29428:intron 20.0%
!! AGATTATGAAACTAATGAAT+TGG - chr3.4:37759552-37759571 MS.gene29428:intron 20.0%
!! TTATTCACACAATAAAAACA+TGG + chr3.4:37760572-37760591 None:intergenic 20.0%
!!! AAGTTACATTTTGTTTTAAC+AGG - chr3.4:37760169-37760188 MS.gene29428:CDS 20.0%
!!! TTAAACATTTTGTTTTACCT+TGG - chr3.4:37760266-37760285 MS.gene29428:intron 20.0%
!!! TTACAAAATTTCTAGTAGTA+TGG - chr3.4:37760593-37760612 MS.gene29428:intron 20.0%
!!! TTGTTGTTAGAAATTATTAG+TGG - chr3.4:37761390-37761409 MS.gene29428:CDS 20.0%
! AGACCCTTATTATCATTATA+TGG + chr3.4:37759850-37759869 None:intergenic 25.0%
! ATAACAAAGGCAAAGTATAA+AGG - chr3.4:37759493-37759512 MS.gene29428:intron 25.0%
! ATGGGTTTAAAAGAATTGTT+GGG - chr3.4:37758762-37758781 MS.gene29428:intron 25.0%
! CAACAACTTTAACAAGATTT+CGG + chr3.4:37760790-37760809 None:intergenic 25.0%
! CACCTACATTTATATAACAA+AGG - chr3.4:37759480-37759499 MS.gene29428:intron 25.0%
! CATAAATTTACCTTGTATAC+TGG + chr3.4:37760549-37760568 None:intergenic 25.0%
! CTATATAAAAGAGTGAATGT+TGG + chr3.4:37759113-37759132 None:intergenic 25.0%
! GAAAACGATCATAATCTTAT+TGG - chr3.4:37761441-37761460 MS.gene29428:CDS 25.0%
! GAGAAATATAAAAGTTCGTA+TGG + chr3.4:37759531-37759550 None:intergenic 25.0%
! TATAGAAAATAATCCATCAG+TGG + chr3.4:37761343-37761362 None:intergenic 25.0%
! TATTAGTGGAAAGAAAAACA+GGG - chr3.4:37761404-37761423 MS.gene29428:CDS 25.0%
! TCAATTATTCACTTAATGCA+TGG + chr3.4:37759715-37759734 None:intergenic 25.0%
! TTAAATATATCTCACAGACA+CGG - chr3.4:37759580-37759599 MS.gene29428:intron 25.0%
! TTATTAGTGGAAAGAAAAAC+AGG - chr3.4:37761403-37761422 MS.gene29428:CDS 25.0%
! TTCATCAAGATTCAAGATTA+AGG - chr3.4:37761080-37761099 MS.gene29428:CDS 25.0%
! TTTAACTGCATGGAAAAATT+GGG - chr3.4:37758241-37758260 MS.gene29428:CDS 25.0%
!! AAATCAGATGTATTTAGCTT+TGG - chr3.4:37761363-37761382 MS.gene29428:CDS 25.0%
!! AACCCAAAAATTTCAGATTT+TGG - chr3.4:37761154-37761173 MS.gene29428:CDS 25.0%
!! ACACGCTTTAACATTTTATT+TGG - chr3.4:37761034-37761053 MS.gene29428:CDS 25.0%
!! ACATATAAATCTTTTCCACT+TGG + chr3.4:37758962-37758981 None:intergenic 25.0%
!! TGCCTTTGTTATATAAATGT+AGG + chr3.4:37759485-37759504 None:intergenic 25.0%
!! TTGGTAAATCTTCCATATTT+TGG + chr3.4:37758552-37758571 None:intergenic 25.0%
!! TTTCGAGTAAATTGTTAGAT+TGG - chr3.4:37761008-37761027 MS.gene29428:CDS 25.0%
!!! AAGCCAAAATCTGAAATTTT+TGG + chr3.4:37761160-37761179 None:intergenic 25.0%
!!! ACATTTTATTTGGAATTGCT+CGG - chr3.4:37761044-37761063 MS.gene29428:CDS 25.0%
!!! AGCCAAAATCTGAAATTTTT+GGG + chr3.4:37761159-37761178 None:intergenic 25.0%
AACTATCTTGTGGTAAGATT+TGG + chr3.4:37758571-37758590 None:intergenic 30.0%
AGAAAATAGAGAAGATCACA+AGG - chr3.4:37760400-37760419 MS.gene29428:intron 30.0%
ATAATCGCAGGTGATAAAAA+TGG - chr3.4:37759391-37759410 MS.gene29428:intron 30.0%
ATCTCCATCAATAAGACAAT+AGG + chr3.4:37759802-37759821 None:intergenic 30.0%
ATTCCTTAACCAATACTCTT+AGG + chr3.4:37759887-37759906 None:intergenic 30.0%
ATTGTAGCTTGATCAAAGAT+GGG + chr3.4:37760468-37760487 None:intergenic 30.0%
CAAATAATGGTTGTTCTATC+TGG - chr3.4:37758906-37758925 MS.gene29428:CDS 30.0%
CGAAATCTTGTTAAAGTTGT+TGG - chr3.4:37760788-37760807 MS.gene29428:CDS 30.0%
CTAATACATTACTTATGCAG+AGG - chr3.4:37759313-37759332 MS.gene29428:intron 30.0%
CTATGTGTCAATGTTTAGAT+GGG - chr3.4:37758645-37758664 MS.gene29428:intron 30.0%
CTTCATATATTGGTACGTAA+AGG - chr3.4:37758993-37759012 MS.gene29428:intron 30.0%
GTTTAACTGCATGGAAAAAT+TGG - chr3.4:37758240-37758259 MS.gene29428:CDS 30.0%
TAATCGCAGGTGATAAAAAT+GGG - chr3.4:37759392-37759411 MS.gene29428:intron 30.0%
TACCAAAACAGTAGTATTGT+CGG - chr3.4:37759417-37759436 MS.gene29428:intron 30.0%
TATTGTAGCTTGATCAAAGA+TGG + chr3.4:37760469-37760488 None:intergenic 30.0%
! AGTCTCGATTCATTTCTTTT+TGG - chr3.4:37760866-37760885 MS.gene29428:CDS 30.0%
! ATGAACTTTTACTTGTGTCT+TGG - chr3.4:37759935-37759954 MS.gene29428:intron 30.0%
! ATTACATGTCCTAAGAGTAT+TGG - chr3.4:37759875-37759894 MS.gene29428:intron 30.0%
! ATTTTTATCACCTGCGATTA+TGG + chr3.4:37759392-37759411 None:intergenic 30.0%
! CAGTAATAGAAATTTTGCCT+CGG - chr3.4:37759908-37759927 MS.gene29428:intron 30.0%
! GAATCCTATTGTCTTATTGA+TGG - chr3.4:37759795-37759814 MS.gene29428:intron 30.0%
! GATGGGTTTAAAAGAATTGT+TGG - chr3.4:37758761-37758780 MS.gene29428:intron 30.0%
! TCAATGCCATTTAAAACAAG+AGG + chr3.4:37760373-37760392 None:intergenic 30.0%
! TCAATGTTTAGATGGGTTTA+AGG - chr3.4:37758652-37758671 MS.gene29428:intron 30.0%
! TGATAAATGAACAACCCTTT+TGG - chr3.4:37760195-37760214 MS.gene29428:CDS 30.0%
! TGGAATAAGTTGTAGGTTTT+GGG - chr3.4:37760331-37760350 MS.gene29428:intron 30.0%
! TTTTTATCACCTGCGATTAT+GGG + chr3.4:37759391-37759410 None:intergenic 30.0%
!! ATCTTCCATATTTTGGATTC+TGG + chr3.4:37758545-37758564 None:intergenic 30.0%
!! ATTTTATTTGGAATTGCTCG+GGG - chr3.4:37761046-37761065 MS.gene29428:CDS 30.0%
!! CATTTTATTTGGAATTGCTC+GGG - chr3.4:37761045-37761064 MS.gene29428:CDS 30.0%
!!! AACACTCCTCTTGTTTTAAA+TGG - chr3.4:37760364-37760383 MS.gene29428:intron 30.0%
!!! AGAGGATCATTGATTTTGTT+TGG - chr3.4:37759331-37759350 MS.gene29428:intron 30.0%
AAGGCTCAACAAAACTCTAT+AGG - chr3.4:37758333-37758352 MS.gene29428:intron 35.0%
AAGTGAGTGTTCGAGAAAAT+TGG - chr3.4:37759213-37759232 MS.gene29428:CDS 35.0%
AATGACACTTGAAGATTGCA+AGG - chr3.4:37758826-37758845 MS.gene29428:CDS 35.0%
AATGGTTGTTCTATCTGGTT+TGG - chr3.4:37758911-37758930 MS.gene29428:CDS 35.0%
AATTGGGATGATCCATCTTT+AGG - chr3.4:37758257-37758276 MS.gene29428:CDS 35.0%
AGTAAAAGTTCATGTTTCCG+AGG + chr3.4:37759928-37759947 None:intergenic 35.0%
ATACCTTAATCAATGCCTCA+AGG - chr3.4:37759999-37760018 MS.gene29428:intron 35.0%
ATCCAAGAATGTGTAGTATC+TGG + chr3.4:37758797-37758816 None:intergenic 35.0%
CCATCTAAACATTGACACAT+AGG + chr3.4:37758647-37758666 None:intergenic 35.0%
CCTATGTGTCAATGTTTAGA+TGG - chr3.4:37758644-37758663 MS.gene29428:CDS 35.0%
CGAGGCAAAATTTCTATTAC+TGG + chr3.4:37759910-37759929 None:intergenic 35.0%
CTTTCCACATAAAGCTTTCA+GGG + chr3.4:37758316-37758335 None:intergenic 35.0%
GACAAGAAATTGCTGTCAAA+AGG - chr3.4:37760693-37760712 MS.gene29428:CDS 35.0%
GACTCAACTGGAACAAATAA+TGG - chr3.4:37758893-37758912 MS.gene29428:CDS 35.0%
GGATTCCAGAATCCAAAATA+TGG - chr3.4:37758537-37758556 MS.gene29428:CDS 35.0%
GTAATGGTAATTGGAGTTGT+GGG - chr3.4:37758726-37758745 MS.gene29428:intron 35.0%
TAATGGTAATTGGAGTTGTG+GGG - chr3.4:37758727-37758746 MS.gene29428:intron 35.0%
TACCTAACCGTAGCAAAATA+CGG + chr3.4:37760230-37760249 None:intergenic 35.0%
TACCTTAATCAATGCCTCAA+GGG - chr3.4:37760000-37760019 MS.gene29428:intron 35.0%
TACTCAAGTTTAGACTCAAC+TGG - chr3.4:37758881-37758900 MS.gene29428:CDS 35.0%
TATGAGTGTTAGCTACTATC+AGG + chr3.4:37759062-37759081 None:intergenic 35.0%
TATGCATCACAACTATCTTG+TGG + chr3.4:37758581-37758600 None:intergenic 35.0%
TCTCTTATGACAACAAGCTT+GGG - chr3.4:37760508-37760527 MS.gene29428:intron 35.0%
TTCTCTTATGACAACAAGCT+TGG - chr3.4:37760507-37760526 MS.gene29428:intron 35.0%
! AACCGACAATACTACTGTTT+TGG + chr3.4:37759422-37759441 None:intergenic 35.0%
! GAAAATTGGAAAGAGAGTGT+TGG - chr3.4:37759227-37759246 MS.gene29428:CDS 35.0%
! GTGGAATAAGTTGTAGGTTT+TGG - chr3.4:37760330-37760349 MS.gene29428:intron 35.0%
!! TGTCCTAAGAGTATTGGTTA+AGG - chr3.4:37759881-37759900 MS.gene29428:intron 35.0%
AAAAGGCTTTCAAGGAGTTC+TGG - chr3.4:37760710-37760729 MS.gene29428:CDS 40.0%
AAGACCCATTTCTAATGCAC+AGG - chr3.4:37759164-37759183 MS.gene29428:CDS 40.0%
AATCCATCAGTGGCATATTC+TGG + chr3.4:37761333-37761352 None:intergenic 40.0%
ACAAAAAAAGGGGTCTTGAG+AGG - chr3.4:37758216-37758235 MS.gene29428:CDS 40.0%
ACTGGATGGGACAAAAAAAG+GGG - chr3.4:37758206-37758225 MS.gene29428:CDS 40.0%
AGACCCATTTCTAATGCACA+GGG - chr3.4:37759165-37759184 MS.gene29428:CDS 40.0%
AGACTGGATGGGACAAAAAA+AGG - chr3.4:37758204-37758223 MS.gene29428:CDS 40.0%
ATACGGTGTGAACAACCAAA+AGG + chr3.4:37760213-37760232 None:intergenic 40.0%
ATATAGGGTACATTGCTCGA+TGG - chr3.4:37760671-37760690 MS.gene29428:CDS 40.0%
ATGCCCTGTGCATTAGAAAT+GGG + chr3.4:37759171-37759190 None:intergenic 40.0%
ATTGTGCCTTCAGGGTTATA+CGG - chr3.4:37760306-37760325 MS.gene29428:intron 40.0%
CACATAAAGCTTTCAGGGTT+TGG + chr3.4:37758311-37758330 None:intergenic 40.0%
CCAATTATTCCACTAGATCG+AGG + chr3.4:37758377-37758396 None:intergenic 40.0%
CCTCGATCTAGTGGAATAAT+TGG - chr3.4:37758374-37758393 MS.gene29428:intron 40.0%
CCTTTCCACATAAAGCTTTC+AGG + chr3.4:37758317-37758336 None:intergenic 40.0%
CGAATGGACGCTTCATATAT+TGG - chr3.4:37758983-37759002 MS.gene29428:intron 40.0%
CGTAATGGTAATTGGAGTTG+TGG - chr3.4:37758725-37758744 MS.gene29428:intron 40.0%
CTCTTATGACAACAAGCTTG+GGG - chr3.4:37760509-37760528 MS.gene29428:intron 40.0%
GAAGAAAGCTCACCTAAAGA+TGG + chr3.4:37758272-37758291 None:intergenic 40.0%
GACTGGATGGGACAAAAAAA+GGG - chr3.4:37758205-37758224 MS.gene29428:CDS 40.0%
GATGTGTGCGTAATGGTAAT+TGG - chr3.4:37758717-37758736 MS.gene29428:intron 40.0%
GGGAGAACAAACAGAATAGT+TGG - chr3.4:37761211-37761230 MS.gene29428:CDS 40.0%
GTGATGCATACAATGTCTGT+GGG - chr3.4:37758591-37758610 MS.gene29428:CDS 40.0%
GTTTGTCAACAATGAAGACG+AGG - chr3.4:37758427-37758446 MS.gene29428:CDS 40.0%
TACAATGTCTGTGGGGAAAA+TGG - chr3.4:37758599-37758618 MS.gene29428:CDS 40.0%
TACGGTGTGAACAACCAAAA+GGG + chr3.4:37760212-37760231 None:intergenic 40.0%
TACGGTGTGGAATAAGTTGT+AGG - chr3.4:37760324-37760343 MS.gene29428:intron 40.0%
TATGCCCTGTGCATTAGAAA+TGG + chr3.4:37759172-37759191 None:intergenic 40.0%
TGATCAAGCTACAATACGCA+AGG - chr3.4:37760473-37760492 MS.gene29428:intron 40.0%
TGATGCATACAATGTCTGTG+GGG - chr3.4:37758592-37758611 MS.gene29428:CDS 40.0%
TGCCAGATACTACACATTCT+TGG - chr3.4:37758792-37758811 MS.gene29428:CDS 40.0%
TGTGATGCATACAATGTCTG+TGG - chr3.4:37758590-37758609 MS.gene29428:CDS 40.0%
TTCAGTAGTCCTTGTGATGT+TGG - chr3.4:37759453-37759472 MS.gene29428:intron 40.0%
TTGCTGTCAAAAGGCTTTCA+AGG - chr3.4:37760702-37760721 MS.gene29428:CDS 40.0%
! CAAACCCTGAAAGCTTTATG+TGG - chr3.4:37758309-37758328 MS.gene29428:CDS 40.0%
! CACACTCAAGAATAGTTCTG+TGG - chr3.4:37758463-37758482 MS.gene29428:CDS 40.0%
! CCTGAAAGCTTTATGTGGAA+AGG - chr3.4:37758314-37758333 MS.gene29428:CDS 40.0%
! GTTCACACCGTATTTTGCTA+CGG - chr3.4:37760220-37760239 MS.gene29428:CDS 40.0%
! GTTGTTGGTTGTTGTATCGA+AGG - chr3.4:37760803-37760822 MS.gene29428:CDS 40.0%
! TATTGGTTGTTTCCTTGCAG+CGG - chr3.4:37761297-37761316 MS.gene29428:CDS 40.0%
! TTTGGCTTAGCTAGAATGTG+TGG - chr3.4:37761172-37761191 MS.gene29428:CDS 40.0%
!! TGGATTCTGGAATCCAAATG+AGG + chr3.4:37758532-37758551 None:intergenic 40.0%
AACAGTGGAATGCAATGGAC+TGG - chr3.4:37758687-37758706 MS.gene29428:intron 45.0%
AACTCTATAGGACAGCACCA+TGG - chr3.4:37758345-37758364 MS.gene29428:intron 45.0%
AATGCTAATGAGTGCCCTTG+AGG + chr3.4:37760017-37760036 None:intergenic 45.0%
AATGTATAGTGCGCATCGTG+TGG + chr3.4:37759278-37759297 None:intergenic 45.0%
AGGTGAATGCCAACATCACA+AGG + chr3.4:37759465-37759484 None:intergenic 45.0%
AGGTGAGCTTTCTTCAGCTA+TGG - chr3.4:37758277-37758296 MS.gene29428:CDS 45.0%
CAGCTTGAATTGTGCCTTCA+GGG - chr3.4:37760298-37760317 MS.gene29428:intron 45.0%
GATCTGAGAGTTTCACCAAG+TGG - chr3.4:37758944-37758963 MS.gene29428:CDS 45.0%
GTGGGGACAAAAAGAGAGAT+GGG - chr3.4:37758744-37758763 MS.gene29428:intron 45.0%
GTTTCCTTGCAGCGGTTATA+TGG - chr3.4:37761305-37761324 MS.gene29428:CDS 45.0%
TATGACAACAAGCTTGGGGA+AGG - chr3.4:37760513-37760532 MS.gene29428:intron 45.0%
TATTCCACTAGATCGAGGAC+CGG + chr3.4:37758372-37758391 None:intergenic 45.0%
TCCATTGCATTCCACTGTTG+TGG + chr3.4:37758686-37758705 None:intergenic 45.0%
TGTGGAGGTGATCAAATCGA+GGG - chr3.4:37761190-37761209 MS.gene29428:CDS 45.0%
TGTGGGGACAAAAAGAGAGA+TGG - chr3.4:37758743-37758762 MS.gene29428:intron 45.0%
! CACCGTATTTTGCTACGGTT+AGG - chr3.4:37760225-37760244 MS.gene29428:CDS 45.0%
!! CTTTCAAGGAGTTCTGGACA+AGG - chr3.4:37760716-37760735 MS.gene29428:CDS 45.0%
!! GAGTTCTGGACAAGGACAAA+AGG - chr3.4:37760724-37760743 MS.gene29428:CDS 45.0%
!! TGCCCTTGAGGCATTGATTA+AGG + chr3.4:37760005-37760024 None:intergenic 45.0%
!! TTGAGAGGCGTTTAACTGCA+TGG - chr3.4:37758231-37758250 MS.gene29428:CDS 45.0%
!!! CGGTTTTGGACCAGTATACA+AGG - chr3.4:37760536-37760555 MS.gene29428:intron 45.0%
!! TCAATTATAAATAATATATA+GGG - chr3.4:37760656-37760675 MS.gene29428:intron 5.0%
!! TTCAATTATAAATAATATAT+AGG - chr3.4:37760655-37760674 MS.gene29428:intron 5.0%
ACAGGTGGATGTGTGCGTAA+TGG - chr3.4:37758710-37758729 MS.gene29428:intron 50.0%
CCAGCTTGAATTGTGCCTTC+AGG - chr3.4:37760297-37760316 MS.gene29428:intron 50.0%
CTCTCTTGACCCATAATCGC+AGG - chr3.4:37759379-37759398 MS.gene29428:intron 50.0%
GCACCAGAATATGCCACTGA+TGG - chr3.4:37761327-37761346 MS.gene29428:CDS 50.0%
GCCACAACAGTGGAATGCAA+TGG - chr3.4:37758682-37758701 MS.gene29428:intron 50.0%
GGCTTAGCTAGAATGTGTGG+AGG - chr3.4:37761175-37761194 MS.gene29428:CDS 50.0%
GTGGAGGTGATCAAATCGAG+GGG - chr3.4:37761191-37761210 MS.gene29428:CDS 50.0%
GTGTGGAGGTGATCAAATCG+AGG - chr3.4:37761189-37761208 MS.gene29428:CDS 50.0%
TATAGGACAGCACCATGGAC+CGG - chr3.4:37758350-37758369 MS.gene29428:intron 50.0%
TCCACACCGTATAACCCTGA+AGG + chr3.4:37760315-37760334 None:intergenic 50.0%
! CCTGAAGGCACAATTCAAGC+TGG + chr3.4:37760300-37760319 None:intergenic 50.0%
!! AATGCAATGGACTGGACAGG+TGG - chr3.4:37758695-37758714 MS.gene29428:intron 50.0%
!! CCAAATGAGGCGTTGACGAA+GGG + chr3.4:37758519-37758538 None:intergenic 50.0%
!! TCCAAATGAGGCGTTGACGA+AGG + chr3.4:37758520-37758539 None:intergenic 50.0%
!! TGGAATGCAATGGACTGGAC+AGG - chr3.4:37758692-37758711 MS.gene29428:intron 50.0%
AGGCGAAATCGCCACAACAG+TGG - chr3.4:37758672-37758691 MS.gene29428:intron 55.0%
CCCTTCGTCAACGCCTCATT+TGG - chr3.4:37758516-37758535 MS.gene29428:CDS 55.0%
GACAACAAGCTTGGGGAAGG+CGG - chr3.4:37760516-37760535 MS.gene29428:intron 55.0%
GCCTTCAGGGTTATACGGTG+TGG - chr3.4:37760311-37760330 MS.gene29428:intron 55.0%
TCAAGCTGGCACGCATTCCA+AGG + chr3.4:37760286-37760305 None:intergenic 55.0%
! AAGCTTGGGGAAGGCGGTTT+TGG - chr3.4:37760522-37760541 MS.gene29428:intron 55.0%
! GGTGCCATATAACCGCTGCA+AGG + chr3.4:37761312-37761331 None:intergenic 55.0%
CTAGATCGAGGACCGGTCCA+TGG + chr3.4:37758365-37758384 None:intergenic 60.0%
TGGACCGGTCCTCGATCTAG+TGG - chr3.4:37758365-37758384 MS.gene29428:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 37758198 37761467 37758198 ID=MS.gene29428
chr3.4 mRNA 37758198 37761467 37758198 ID=MS.gene29428.t1;Parent=MS.gene29428
chr3.4 exon 37760661 37761467 37760661 ID=MS.gene29428.t1.exon1;Parent=MS.gene29428.t1
chr3.4 CDS 37760661 37761467 37760661 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
chr3.4 exon 37760151 37760264 37760151 ID=MS.gene29428.t1.exon2;Parent=MS.gene29428.t1
chr3.4 CDS 37760151 37760264 37760151 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
chr3.4 exon 37759108 37759265 37759108 ID=MS.gene29428.t1.exon3;Parent=MS.gene29428.t1
chr3.4 CDS 37759108 37759265 37759108 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
chr3.4 exon 37758778 37758988 37758778 ID=MS.gene29428.t1.exon4;Parent=MS.gene29428.t1
chr3.4 CDS 37758778 37758988 37758778 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
chr3.4 exon 37758426 37758663 37758426 ID=MS.gene29428.t1.exon5;Parent=MS.gene29428.t1
chr3.4 CDS 37758426 37758663 37758426 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
chr3.4 exon 37758198 37758348 37758198 ID=MS.gene29428.t1.exon6;Parent=MS.gene29428.t1
chr3.4 CDS 37758198 37758348 37758198 ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1
Gene Sequence

>MS.gene29428

GAATGAAGACTGGATGGGACAAAAAAAGGGGTCTTGAGAGGCGTTTAACTGCATGGAAAAATTGGGATGATCCATCTTTAGGTGAGCTTTCTTCAGCTATGGTATTAACTCCAAACCCTGAAAGCTTTATGTGGAAAGGCTCAACAAAACTCTATAGGACAGCACCATGGACCGGTCCTCGATCTAGTGGAATAATTGGATTCAAAGAAAATCCACTTTTTAATTTTGAGTTTGTCAACAATGAAGACGAGGTATATTATATGTTCACACTCAAGAATAGTTCTGTGGTTTCGATAATTGTTTTTAACGAAACAGTTTCCCTTCGTCAACGCCTCATTTGGATTCCAGAATCCAAAATATGGAAGATTTACCAAATCTTACCACAAGATAGTTGTGATGCATACAATGTCTGTGGGGAAAATGGACAGTGTGTGCTTGATGCATCACCTATGTGTCAATGTTTAGATGGGTTTAAGGCGAAATCGCCACAACAGTGGAATGCAATGGACTGGACAGGTGGATGTGTGCGTAATGGTAATTGGAGTTGTGGGGACAAAAAGAGAGATGGGTTTAAAAGAATTGTTGGGATGAAAATGCCAGATACTACACATTCTTGGATTGATGAGAAAATGACACTTGAAGATTGCAAGGCTAGATGTTTGCAAAATTGTTCTTGCACTGCTTACTCAAGTTTAGACTCAACTGGAACAAATAATGGTTGTTCTATCTGGTTTGGTGATCTTCTTGATCTGAGAGTTTCACCAAGTGGAAAAGATTTATATGTTCGAATGGACGCTTCATATATTGGTACGTAAAGGCTTTCATAGTTTTTTTTTTTTTTTTAACAATGATATGTGTACACCTGATAGTAGCTAACACTCATATAACAACATTCTCTTTTCAACATTTTTTCCAACATTCACTCTTTTATATAGTGAAATTTATGTGAGTCTCATCACTTTATGTAAGACCCATTTCTAATGCACAGGGCATATATGAAGTTCATCTGAGAAGAAAGTGAGTGTTCGAGAAAATTGGAAAGAGAGTGTTGGTAACACTACTCTAAATGTATACACTCCACACGATGCGCACTATACATTTTTCTTTTGTTAATACTAATACATTACTTATGCAGAGGATCATTGATTTTGTTTGGAAATCACATCACATGTGCTTTGTTTCTCTCTTGACCCATAATCGCAGGTGATAAAAATGGGCATACCAAAACAGTAGTATTGTCGGTTTCAATTACAATTTCAGTAGTCCTTGTGATGTTGGCATTCACCTACATTTATATAACAAAGGCAAAGTATAAAGGTAAGTTTCTTAGCCATACGAACTTTTATATTTCTCAAGATTATGAAACTAATGAATTGGACACATTAAATATATCTCACAGACACGGTGTATAATTGAAAAGAGTGCGAAAATACTGAGTACTGCTATCTGAAATTAATTTTGCTCTCATGACTTTAAGTGAAATCTATTTTTAAAATGTAGTTTCGATATTAATTCCATGCATTAAGTGAATAATTGAGAGTGTTCATAACATTTATCATAGTTAAATATTCAATGCAATTTTATTAGAATAAAAGGTGAATCCTATTGTCTTATTGATGGAGATTAGTCGCTTAACTAACATGTAAACTCCATATAATGATAATAAGGGTCTTGCTAATTACATGTCCTAAGAGTATTGGTTAAGGAATCCAGTAATAGAAATTTTGCCTCGGAAACATGAACTTTTACTTGTGTCTTGGCAATAATCATATCGCTTTTTGATGCAAACTTACTAATTTTAATACCTTAATCAATGCCTCAAGGGCACTCATTAGCATTCGACTAAAATAGTAATAATACATTATATATCAAAATGACGTTTTGTTTTAAATTATATATTTTTTCTTCAAAAATTATATTAGTTAAAAAAAATATAGACGTAATGTTGTTTCATGTGCTAACTTTTCAATCAAGTTACATTTTGTTTTAACAGGAAATGATAAATGAACAACCCTTTTGGTTGTTCACACCGTATTTTGCTACGGTTAGGTAATATAAGTTGAATTTTTTAAACATTTTGTTTTACCTTGGAATGCGTGCCAGCTTGAATTGTGCCTTCAGGGTTATACGGTGTGGAATAAGTTGTAGGTTTTGGGTTGCTAAAATAACACTCCTCTTGTTTTAAATGGCATTGATTAAAAGAGAAAATAGAGAAGATCACAAGGTCAGAAGAGAATGATGAAGAAACACATGAAGATTTTGAGCTTCCCATCTTTGATCAAGCTACAATACGCAAGGCAACAAATAACTTCTCTTATGACAACAAGCTTGGGGAAGGCGGTTTTGGACCAGTATACAAGGTAAATTTATGCCATGTTTTTATTGTGTGAATAACTTACAAAATTTCTAGTAGTATGGATAAAATAGAAACAGTGAAATTCATTATTTATAAAAAAATTCAATTATAAATAATATATAGGGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGGCTTTCAAGGAGTTCTGGACAAGGACAAAAGGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATCGAAGGAGATGAGAAAATGTTGATCTATGAATACATGCTCAATAAAAGTCTCGATTCATTTCTTTTTGGTTAGTATTTTTTTTTTTTTTTGCGAAGTGTAATATTTGATCTAACATAAACTTAGTAAAATTTTTTGTTGTTGCAAAGAAATGATTAATGAACTTATTGAACACTTTTTTCAGATACATTTTCGAGTAAATTGTTAGATTGGTCTACACGCTTTAACATTTTATTTGGAATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGATTAAGGATCATACACAGAGATCTAAAAGTCAGTAATATTTTATTAGACAGTGATATGAACCCAAAAATTTCAGATTTTGGCTTAGCTAGAATGTGTGGAGGTGATCAAATCGAGGGGAGAACAAACAGAATAGTTGGCACATAGTAAGTATCTTAAAACATAATAACTTATTTGTATAAATAATTAAACATCTGAAAATTTATTGGTTGTTTCCTTGCAGCGGTTATATGGCACCAGAATATGCCACTGATGGATTATTTTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTGTTGTTAGAAATTATTAGTGGAAAGAAAAACAGGGCACTTAGCTATCAAGAAAACGATCATAATCTTATTGGATAT

Protein sequence

>MS.gene29428.t1

EURLDGTKKGVLRGVULHGKIGMIHLUVSFLQLWYULQTLKALCGKAQQNSIGQHHGPVLDLVEULDSKKIHFLILSLSTMKTRYIICSHSRIVLWFRULFLTKQFPFVNASFGFQNPKYGRFTKSYHKIVVMHTMSVGKMDSVCLMHHLCVNVUMGLRRNRHNSGMQWTGQVDVCVMVIGVVGTKREMGLKELLGUKCQILHILGLMRKUHLKIARLDVCKIVLALLTQVUTQLEQIMVVLSGLVIFLIUEFHQVEKIYMFEWTLHILVIKMGIPKQUYCRFQLQFQUSLUCWHSPTFIUQRQSIKRKURRSQGQKRMMKKHMKILSFPSLIKLQYARQQITSLMTTSLGKAVLDQYTRVHCSMDKKLLSKGFQGVLDKDKRSLKMKLYYVLNFNTEILLKLLVVVSKEMRKCUSMNTCSIKVSIHFFLIHFRVNCUIGLHALTFYLELLGVFFIFIKIQDUGSYTEIUKSVIFYUTVIUTQKFQILAULECVEVIKSRGEQTEULAHTVIWHQNMPLMDYFLUNQMYLALAYCCUKLLVERKTGHLAIKKTIIILLD