Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29428.t1 | XP_013442779.1 | 82.5 | 560 | 97 | 1 | 1 | 559 | 155 | 714 | 1.10E-259 | 905.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29428.t1 | O81832 | 49.5 | 560 | 242 | 4 | 1 | 559 | 162 | 681 | 1.0e-155 | 551.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29428.t1 | A0A072TTD3 | 82.5 | 560 | 97 | 1 | 1 | 559 | 155 | 714 | 8.3e-260 | 905.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene29428 | 0.829239 | 5.75E-55 | -1.69E-46 |
MS.gene049283 | MS.gene29428 | 0.810896 | 9.18E-51 | -1.69E-46 |
MS.gene049499 | MS.gene29428 | 0.813121 | 3.00E-51 | -1.69E-46 |
MS.gene049567 | MS.gene29428 | 0.805909 | 1.06E-49 | -1.69E-46 |
MS.gene050026 | MS.gene29428 | 0.805293 | 1.43E-49 | -1.69E-46 |
MS.gene050559 | MS.gene29428 | 0.806172 | 9.36E-50 | -1.69E-46 |
MS.gene050561 | MS.gene29428 | 0.804007 | 2.66E-49 | -1.69E-46 |
MS.gene050562 | MS.gene29428 | 0.802946 | 4.41E-49 | -1.69E-46 |
MS.gene051332 | MS.gene29428 | 0.827321 | 1.67E-54 | -1.69E-46 |
MS.gene051492 | MS.gene29428 | 0.82486 | 6.42E-54 | -1.69E-46 |
MS.gene051744 | MS.gene29428 | 0.824108 | 9.65E-54 | -1.69E-46 |
MS.gene051832 | MS.gene29428 | 0.830929 | 2.23E-55 | -1.69E-46 |
MS.gene052118 | MS.gene29428 | 0.802373 | 5.79E-49 | -1.69E-46 |
MS.gene052493 | MS.gene29428 | 0.808373 | 3.20E-50 | -1.69E-46 |
MS.gene052534 | MS.gene29428 | 0.810731 | 9.96E-51 | -1.69E-46 |
MS.gene052582 | MS.gene29428 | 0.80863 | 2.82E-50 | -1.69E-46 |
MS.gene052584 | MS.gene29428 | 0.819782 | 9.69E-53 | -1.69E-46 |
MS.gene052586 | MS.gene29428 | 0.828878 | 7.04E-55 | -1.69E-46 |
MS.gene052685 | MS.gene29428 | 0.822024 | 2.96E-53 | -1.69E-46 |
MS.gene052889 | MS.gene29428 | 0.810843 | 9.42E-51 | -1.69E-46 |
MS.gene05308 | MS.gene29428 | 0.804798 | 1.82E-49 | -1.69E-46 |
MS.gene053094 | MS.gene29428 | 0.813284 | 2.77E-51 | -1.69E-46 |
MS.gene053226 | MS.gene29428 | 0.803165 | 3.97E-49 | -1.69E-46 |
MS.gene053296 | MS.gene29428 | 0.808097 | 3.66E-50 | -1.69E-46 |
MS.gene053963 | MS.gene29428 | 0.824587 | 7.45E-54 | -1.69E-46 |
MS.gene05423 | MS.gene29428 | 0.809928 | 1.48E-50 | -1.69E-46 |
MS.gene05439 | MS.gene29428 | 0.818467 | 1.93E-52 | -1.69E-46 |
MS.gene054479 | MS.gene29428 | 0.809213 | 2.11E-50 | -1.69E-46 |
MS.gene054576 | MS.gene29428 | 0.85034 | 1.81E-60 | -1.69E-46 |
MS.gene054892 | MS.gene29428 | 0.852185 | 5.45E-61 | -1.69E-46 |
MS.gene054893 | MS.gene29428 | 0.847673 | 9.97E-60 | -1.69E-46 |
MS.gene055166 | MS.gene29428 | 0.808816 | 2.57E-50 | -1.69E-46 |
MS.gene055586 | MS.gene29428 | 0.830604 | 2.67E-55 | -1.69E-46 |
MS.gene056162 | MS.gene29428 | 0.840415 | 8.82E-58 | -1.69E-46 |
MS.gene05659 | MS.gene29428 | 0.80939 | 1.94E-50 | -1.69E-46 |
MS.gene05686 | MS.gene29428 | 0.828797 | 7.36E-55 | -1.69E-46 |
MS.gene056973 | MS.gene29428 | 0.802749 | 4.84E-49 | -1.69E-46 |
MS.gene057071 | MS.gene29428 | 0.811877 | 5.62E-51 | -1.69E-46 |
MS.gene057155 | MS.gene29428 | 0.805414 | 1.35E-49 | -1.69E-46 |
MS.gene057208 | MS.gene29428 | 0.837526 | 4.93E-57 | -1.69E-46 |
MS.gene057611 | MS.gene29428 | 0.820671 | 6.06E-53 | -1.69E-46 |
MS.gene05952 | MS.gene29428 | 0.813493 | 2.49E-51 | -1.69E-46 |
MS.gene059550 | MS.gene29428 | 0.800988 | 1.11E-48 | -1.69E-46 |
MS.gene05985 | MS.gene29428 | -0.813159 | 2.95E-51 | -1.69E-46 |
MS.gene059935 | MS.gene29428 | 0.809123 | 2.21E-50 | -1.69E-46 |
MS.gene060412 | MS.gene29428 | 0.825431 | 4.70E-54 | -1.69E-46 |
MS.gene060413 | MS.gene29428 | 0.800578 | 1.35E-48 | -1.69E-46 |
MS.gene060520 | MS.gene29428 | 0.802911 | 4.48E-49 | -1.69E-46 |
MS.gene060716 | MS.gene29428 | 0.805426 | 1.34E-49 | -1.69E-46 |
MS.gene060935 | MS.gene29428 | 0.806414 | 8.32E-50 | -1.69E-46 |
MS.gene060937 | MS.gene29428 | 0.808435 | 3.10E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 103 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTCCACATAAAGCTTTC+AGG | 0.143175 | 3.4:+37761329 | None:intergenic |
GAAAACGATCATAATCTTAT+TGG | 0.203863 | 3.4:-37758202 | MS.gene29428:CDS |
AAGCTTGGGGAAGGCGGTTT+TGG | 0.213522 | 3.4:-37759121 | MS.gene29428:CDS |
CAAATAATGGTTGTTCTATC+TGG | 0.216756 | 3.4:-37760737 | MS.gene29428:CDS |
TTGGTAAATCTTCCATATTT+TGG | 0.219811 | 3.4:+37761094 | None:intergenic |
CACATAAAGCTTTCAGGGTT+TGG | 0.224626 | 3.4:+37761335 | None:intergenic |
TCAATGTTTAGATGGGTTTA+AGG | 0.226573 | 3.4:-37760991 | MS.gene29428:CDS |
TTCATCAAGATTCAAGATTA+AGG | 0.255015 | 3.4:-37758563 | MS.gene29428:CDS |
CGAATGGACGCTTCATATAT+TGG | 0.255409 | 3.4:-37760660 | MS.gene29428:intron |
CCTATGTGTCAATGTTTAGA+TGG | 0.257578 | 3.4:-37760999 | MS.gene29428:CDS |
CCTCGATCTAGTGGAATAAT+TGG | 0.258846 | 3.4:-37761269 | MS.gene29428:CDS |
GTTTCCTTGCAGCGGTTATA+TGG | 0.274988 | 3.4:-37758338 | MS.gene29428:intron |
GACTCAACTGGAACAAATAA+TGG | 0.280925 | 3.4:-37760750 | MS.gene29428:CDS |
TACAATGTCTGTGGGGAAAA+TGG | 0.288503 | 3.4:-37761044 | MS.gene29428:CDS |
CCCTTCGTCAACGCCTCATT+TGG | 0.299797 | 3.4:-37761127 | MS.gene29428:CDS |
TGCCAGATACTACACATTCT+TGG | 0.307708 | 3.4:-37760851 | MS.gene29428:CDS |
AACTATCTTGTGGTAAGATT+TGG | 0.307810 | 3.4:+37761075 | None:intergenic |
AACCGACAATACTACTGTTT+TGG | 0.308892 | 3.4:+37760224 | None:intergenic |
CAACAACTTTAACAAGATTT+CGG | 0.312756 | 3.4:+37758856 | None:intergenic |
AATTGGGATGATCCATCTTT+AGG | 0.313612 | 3.4:-37761386 | MS.gene29428:CDS |
CGAAATCTTGTTAAAGTTGT+TGG | 0.318139 | 3.4:-37758855 | MS.gene29428:CDS |
GGATTCCAGAATCCAAAATA+TGG | 0.331273 | 3.4:-37761106 | MS.gene29428:CDS |
AATCCATCAGTGGCATATTC+TGG | 0.347641 | 3.4:+37758313 | None:intergenic |
TTTCGAGTAAATTGTTAGAT+TGG | 0.359253 | 3.4:-37758635 | MS.gene29428:CDS |
CATAAATTTACCTTGTATAC+TGG | 0.366690 | 3.4:+37759097 | None:intergenic |
ATCCAAGAATGTGTAGTATC+TGG | 0.380469 | 3.4:+37760849 | None:intergenic |
GATGGGTTTAAAAGAATTGT+TGG | 0.392061 | 3.4:-37760882 | MS.gene29428:CDS |
TTGCTGTCAAAAGGCTTTCA+AGG | 0.394328 | 3.4:-37758941 | MS.gene29428:CDS |
AAATCAGATGTATTTAGCTT+TGG | 0.395433 | 3.4:-37758280 | MS.gene29428:CDS |
ATAACAAAGGCAAAGTATAA+AGG | 0.397662 | 3.4:-37760150 | MS.gene29428:intron |
TCTCTTATGACAACAAGCTT+GGG | 0.403222 | 3.4:-37759135 | MS.gene29428:CDS |
TACTCAAGTTTAGACTCAAC+TGG | 0.404191 | 3.4:-37760762 | MS.gene29428:CDS |
AAAAGGCTTTCAAGGAGTTC+TGG | 0.405912 | 3.4:-37758933 | MS.gene29428:CDS |
GATGTGTGCGTAATGGTAAT+TGG | 0.406785 | 3.4:-37760926 | MS.gene29428:CDS |
CTTTCCACATAAAGCTTTCA+GGG | 0.432907 | 3.4:+37761330 | None:intergenic |
AGGTGAGCTTTCTTCAGCTA+TGG | 0.435172 | 3.4:-37761366 | MS.gene29428:CDS |
AAGGCTCAACAAAACTCTAT+AGG | 0.438625 | 3.4:-37761310 | MS.gene29428:CDS |
TTCTCTTATGACAACAAGCT+TGG | 0.439774 | 3.4:-37759136 | MS.gene29428:CDS |
ATGGGTTTAAAAGAATTGTT+GGG | 0.448622 | 3.4:-37760881 | MS.gene29428:CDS |
TTGTTGTTAGAAATTATTAG+TGG | 0.452086 | 3.4:-37758253 | MS.gene29428:CDS |
GACAAGAAATTGCTGTCAAA+AGG | 0.458542 | 3.4:-37758950 | MS.gene29428:CDS |
TTCAGTAGTCCTTGTGATGT+TGG | 0.459202 | 3.4:-37760190 | MS.gene29428:CDS |
TGCCTTTGTTATATAAATGT+AGG | 0.466634 | 3.4:+37760161 | None:intergenic |
AATGGTTGTTCTATCTGGTT+TGG | 0.470216 | 3.4:-37760732 | MS.gene29428:CDS |
CTATGTGTCAATGTTTAGAT+GGG | 0.472714 | 3.4:-37760998 | MS.gene29428:CDS |
TATTGTAGCTTGATCAAAGA+TGG | 0.476869 | 3.4:+37759177 | None:intergenic |
GAAGAAAGCTCACCTAAAGA+TGG | 0.496500 | 3.4:+37761374 | None:intergenic |
TCCATTGCATTCCACTGTTG+TGG | 0.504146 | 3.4:+37760960 | None:intergenic |
GAGTTCTGGACAAGGACAAA+AGG | 0.504884 | 3.4:-37758919 | MS.gene29428:CDS |
GGGAGAACAAACAGAATAGT+TGG | 0.513456 | 3.4:-37758432 | MS.gene29428:CDS |
GTTGTTGGTTGTTGTATCGA+AGG | 0.514309 | 3.4:-37758840 | MS.gene29428:CDS |
TACCAAAACAGTAGTATTGT+CGG | 0.526173 | 3.4:-37760226 | MS.gene29428:CDS |
TGGATTCTGGAATCCAAATG+AGG | 0.534031 | 3.4:+37761114 | None:intergenic |
TACCAGGAATGAAGACTGGA+TGG | 0.536914 | 3.4:-37761451 | None:intergenic |
GTAATGGTAATTGGAGTTGT+GGG | 0.537345 | 3.4:-37760917 | MS.gene29428:CDS |
AACAGTGGAATGCAATGGAC+TGG | 0.537795 | 3.4:-37760956 | MS.gene29428:CDS |
CGTAATGGTAATTGGAGTTG+TGG | 0.550967 | 3.4:-37760918 | MS.gene29428:CDS |
TTGAGAGGCGTTTAACTGCA+TGG | 0.554118 | 3.4:-37761412 | MS.gene29428:CDS |
AATGACACTTGAAGATTGCA+AGG | 0.556505 | 3.4:-37760817 | MS.gene29428:CDS |
CAAACCCTGAAAGCTTTATG+TGG | 0.557196 | 3.4:-37761334 | MS.gene29428:CDS |
CCATCTAAACATTGACACAT+AGG | 0.557554 | 3.4:+37760999 | None:intergenic |
CCTGAAAGCTTTATGTGGAA+AGG | 0.563846 | 3.4:-37761329 | MS.gene29428:CDS |
GCACCAGAATATGCCACTGA+TGG | 0.564364 | 3.4:-37758316 | MS.gene29428:CDS |
CACCTACATTTATATAACAA+AGG | 0.565405 | 3.4:-37760163 | MS.gene29428:CDS |
CTAGATCGAGGACCGGTCCA+TGG | 0.566135 | 3.4:+37761281 | None:intergenic |
AAAAGATTTATATGTTCGAA+TGG | 0.566797 | 3.4:-37760676 | MS.gene29428:CDS |
CCAAATGAGGCGTTGACGAA+GGG | 0.567310 | 3.4:+37761127 | None:intergenic |
TGGACCGGTCCTCGATCTAG+TGG | 0.573026 | 3.4:-37761278 | MS.gene29428:CDS |
ATATTACCAGGAATGAAGAC+TGG | 0.576953 | 3.4:-37761455 | None:intergenic |
TCCAAATGAGGCGTTGACGA+AGG | 0.582229 | 3.4:+37761126 | None:intergenic |
TTTGGCTTAGCTAGAATGTG+TGG | 0.582884 | 3.4:-37758471 | MS.gene29428:CDS |
TATGACAACAAGCTTGGGGA+AGG | 0.585345 | 3.4:-37759130 | MS.gene29428:CDS |
ATTGTAGCTTGATCAAAGAT+GGG | 0.590904 | 3.4:+37759178 | None:intergenic |
GACAACAAGCTTGGGGAAGG+CGG | 0.594341 | 3.4:-37759127 | MS.gene29428:CDS |
TATAGGACAGCACCATGGAC+CGG | 0.594545 | 3.4:-37761293 | MS.gene29428:CDS |
AGGCGAAATCGCCACAACAG+TGG | 0.598854 | 3.4:-37760971 | MS.gene29428:CDS |
CTCTTATGACAACAAGCTTG+GGG | 0.601135 | 3.4:-37759134 | MS.gene29428:CDS |
CACACTCAAGAATAGTTCTG+TGG | 0.603411 | 3.4:-37761180 | MS.gene29428:CDS |
TATAGAAAATAATCCATCAG+TGG | 0.612878 | 3.4:+37758303 | None:intergenic |
TGTGGAGGTGATCAAATCGA+GGG | 0.614714 | 3.4:-37758453 | MS.gene29428:CDS |
AGGTGAATGCCAACATCACA+AGG | 0.617305 | 3.4:+37760181 | None:intergenic |
ACAGGTGGATGTGTGCGTAA+TGG | 0.626557 | 3.4:-37760933 | MS.gene29428:CDS |
GTGATGCATACAATGTCTGT+GGG | 0.630917 | 3.4:-37761052 | MS.gene29428:CDS |
GCCACAACAGTGGAATGCAA+TGG | 0.631854 | 3.4:-37760961 | MS.gene29428:CDS |
CTTTCAAGGAGTTCTGGACA+AGG | 0.632091 | 3.4:-37758927 | MS.gene29428:CDS |
TGATCAAGCTACAATACGCA+AGG | 0.632201 | 3.4:-37759170 | MS.gene29428:CDS |
TGGAATGCAATGGACTGGAC+AGG | 0.635110 | 3.4:-37760951 | MS.gene29428:CDS |
AGAAAATAGAGAAGATCACA+AGG | 0.636320 | 3.4:-37759243 | MS.gene29428:CDS |
GATCTGAGAGTTTCACCAAG+TGG | 0.644954 | 3.4:-37760699 | MS.gene29428:CDS |
TATGCATCACAACTATCTTG+TGG | 0.645355 | 3.4:+37761065 | None:intergenic |
TATTCCACTAGATCGAGGAC+CGG | 0.646406 | 3.4:+37761274 | None:intergenic |
ATATAGGGTACATTGCTCGA+TGG | 0.650298 | 3.4:-37758972 | MS.gene29428:intron |
GTGTGGAGGTGATCAAATCG+AGG | 0.653014 | 3.4:-37758454 | MS.gene29428:CDS |
ACCAGGAATGAAGACTGGAT+GGG | 0.653964 | 3.4:-37761450 | None:intergenic |
GGCTTAGCTAGAATGTGTGG+AGG | 0.656486 | 3.4:-37758468 | MS.gene29428:CDS |
AATGCAATGGACTGGACAGG+TGG | 0.659695 | 3.4:-37760948 | MS.gene29428:CDS |
TGTGATGCATACAATGTCTG+TGG | 0.662722 | 3.4:-37761053 | MS.gene29428:CDS |
AACTCTATAGGACAGCACCA+TGG | 0.671553 | 3.4:-37761298 | MS.gene29428:CDS |
CCAATTATTCCACTAGATCG+AGG | 0.678881 | 3.4:+37761269 | None:intergenic |
GTTTGTCAACAATGAAGACG+AGG | 0.691153 | 3.4:-37761216 | MS.gene29428:CDS |
GTGGAGGTGATCAAATCGAG+GGG | 0.710704 | 3.4:-37758452 | MS.gene29428:CDS |
TAATGGTAATTGGAGTTGTG+GGG | 0.729152 | 3.4:-37760916 | MS.gene29428:CDS |
TGATGCATACAATGTCTGTG+GGG | 0.783493 | 3.4:-37761051 | MS.gene29428:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAACATCTGAAAATTTAT+TGG | - | chr3.4:37761280-37761299 | MS.gene29428:CDS | 15.0% |
!!! | TGCAATTTTATTAGAATAAA+AGG | - | chr3.4:37759771-37759790 | MS.gene29428:intron | 15.0% |
!! | AAAAGATTTATATGTTCGAA+TGG | - | chr3.4:37758967-37758986 | MS.gene29428:CDS | 20.0% |
!! | AACTCCATATAATGATAATA+AGG | - | chr3.4:37759843-37759862 | MS.gene29428:intron | 20.0% |
!! | ACAAACTCAAAATTAAAAAG+TGG | + | chr3.4:37758413-37758432 | None:intergenic | 20.0% |
!! | ACTCCATATAATGATAATAA+GGG | - | chr3.4:37759844-37759863 | MS.gene29428:intron | 20.0% |
!! | AGATTATGAAACTAATGAAT+TGG | - | chr3.4:37759552-37759571 | MS.gene29428:intron | 20.0% |
!! | TTATTCACACAATAAAAACA+TGG | + | chr3.4:37760572-37760591 | None:intergenic | 20.0% |
!!! | AAGTTACATTTTGTTTTAAC+AGG | - | chr3.4:37760169-37760188 | MS.gene29428:CDS | 20.0% |
!!! | TTAAACATTTTGTTTTACCT+TGG | - | chr3.4:37760266-37760285 | MS.gene29428:intron | 20.0% |
!!! | TTACAAAATTTCTAGTAGTA+TGG | - | chr3.4:37760593-37760612 | MS.gene29428:intron | 20.0% |
!!! | TTGTTGTTAGAAATTATTAG+TGG | - | chr3.4:37761390-37761409 | MS.gene29428:CDS | 20.0% |
! | AGACCCTTATTATCATTATA+TGG | + | chr3.4:37759850-37759869 | None:intergenic | 25.0% |
! | ATAACAAAGGCAAAGTATAA+AGG | - | chr3.4:37759493-37759512 | MS.gene29428:intron | 25.0% |
! | ATGGGTTTAAAAGAATTGTT+GGG | - | chr3.4:37758762-37758781 | MS.gene29428:intron | 25.0% |
! | CAACAACTTTAACAAGATTT+CGG | + | chr3.4:37760790-37760809 | None:intergenic | 25.0% |
! | CACCTACATTTATATAACAA+AGG | - | chr3.4:37759480-37759499 | MS.gene29428:intron | 25.0% |
! | CATAAATTTACCTTGTATAC+TGG | + | chr3.4:37760549-37760568 | None:intergenic | 25.0% |
! | CTATATAAAAGAGTGAATGT+TGG | + | chr3.4:37759113-37759132 | None:intergenic | 25.0% |
! | GAAAACGATCATAATCTTAT+TGG | - | chr3.4:37761441-37761460 | MS.gene29428:CDS | 25.0% |
! | GAGAAATATAAAAGTTCGTA+TGG | + | chr3.4:37759531-37759550 | None:intergenic | 25.0% |
! | TATAGAAAATAATCCATCAG+TGG | + | chr3.4:37761343-37761362 | None:intergenic | 25.0% |
! | TATTAGTGGAAAGAAAAACA+GGG | - | chr3.4:37761404-37761423 | MS.gene29428:CDS | 25.0% |
! | TCAATTATTCACTTAATGCA+TGG | + | chr3.4:37759715-37759734 | None:intergenic | 25.0% |
! | TTAAATATATCTCACAGACA+CGG | - | chr3.4:37759580-37759599 | MS.gene29428:intron | 25.0% |
! | TTATTAGTGGAAAGAAAAAC+AGG | - | chr3.4:37761403-37761422 | MS.gene29428:CDS | 25.0% |
! | TTCATCAAGATTCAAGATTA+AGG | - | chr3.4:37761080-37761099 | MS.gene29428:CDS | 25.0% |
! | TTTAACTGCATGGAAAAATT+GGG | - | chr3.4:37758241-37758260 | MS.gene29428:CDS | 25.0% |
!! | AAATCAGATGTATTTAGCTT+TGG | - | chr3.4:37761363-37761382 | MS.gene29428:CDS | 25.0% |
!! | AACCCAAAAATTTCAGATTT+TGG | - | chr3.4:37761154-37761173 | MS.gene29428:CDS | 25.0% |
!! | ACACGCTTTAACATTTTATT+TGG | - | chr3.4:37761034-37761053 | MS.gene29428:CDS | 25.0% |
!! | ACATATAAATCTTTTCCACT+TGG | + | chr3.4:37758962-37758981 | None:intergenic | 25.0% |
!! | TGCCTTTGTTATATAAATGT+AGG | + | chr3.4:37759485-37759504 | None:intergenic | 25.0% |
!! | TTGGTAAATCTTCCATATTT+TGG | + | chr3.4:37758552-37758571 | None:intergenic | 25.0% |
!! | TTTCGAGTAAATTGTTAGAT+TGG | - | chr3.4:37761008-37761027 | MS.gene29428:CDS | 25.0% |
!!! | AAGCCAAAATCTGAAATTTT+TGG | + | chr3.4:37761160-37761179 | None:intergenic | 25.0% |
!!! | ACATTTTATTTGGAATTGCT+CGG | - | chr3.4:37761044-37761063 | MS.gene29428:CDS | 25.0% |
!!! | AGCCAAAATCTGAAATTTTT+GGG | + | chr3.4:37761159-37761178 | None:intergenic | 25.0% |
AACTATCTTGTGGTAAGATT+TGG | + | chr3.4:37758571-37758590 | None:intergenic | 30.0% | |
AGAAAATAGAGAAGATCACA+AGG | - | chr3.4:37760400-37760419 | MS.gene29428:intron | 30.0% | |
ATAATCGCAGGTGATAAAAA+TGG | - | chr3.4:37759391-37759410 | MS.gene29428:intron | 30.0% | |
ATCTCCATCAATAAGACAAT+AGG | + | chr3.4:37759802-37759821 | None:intergenic | 30.0% | |
ATTCCTTAACCAATACTCTT+AGG | + | chr3.4:37759887-37759906 | None:intergenic | 30.0% | |
ATTGTAGCTTGATCAAAGAT+GGG | + | chr3.4:37760468-37760487 | None:intergenic | 30.0% | |
CAAATAATGGTTGTTCTATC+TGG | - | chr3.4:37758906-37758925 | MS.gene29428:CDS | 30.0% | |
CGAAATCTTGTTAAAGTTGT+TGG | - | chr3.4:37760788-37760807 | MS.gene29428:CDS | 30.0% | |
CTAATACATTACTTATGCAG+AGG | - | chr3.4:37759313-37759332 | MS.gene29428:intron | 30.0% | |
CTATGTGTCAATGTTTAGAT+GGG | - | chr3.4:37758645-37758664 | MS.gene29428:intron | 30.0% | |
CTTCATATATTGGTACGTAA+AGG | - | chr3.4:37758993-37759012 | MS.gene29428:intron | 30.0% | |
GTTTAACTGCATGGAAAAAT+TGG | - | chr3.4:37758240-37758259 | MS.gene29428:CDS | 30.0% | |
TAATCGCAGGTGATAAAAAT+GGG | - | chr3.4:37759392-37759411 | MS.gene29428:intron | 30.0% | |
TACCAAAACAGTAGTATTGT+CGG | - | chr3.4:37759417-37759436 | MS.gene29428:intron | 30.0% | |
TATTGTAGCTTGATCAAAGA+TGG | + | chr3.4:37760469-37760488 | None:intergenic | 30.0% | |
! | AGTCTCGATTCATTTCTTTT+TGG | - | chr3.4:37760866-37760885 | MS.gene29428:CDS | 30.0% |
! | ATGAACTTTTACTTGTGTCT+TGG | - | chr3.4:37759935-37759954 | MS.gene29428:intron | 30.0% |
! | ATTACATGTCCTAAGAGTAT+TGG | - | chr3.4:37759875-37759894 | MS.gene29428:intron | 30.0% |
! | ATTTTTATCACCTGCGATTA+TGG | + | chr3.4:37759392-37759411 | None:intergenic | 30.0% |
! | CAGTAATAGAAATTTTGCCT+CGG | - | chr3.4:37759908-37759927 | MS.gene29428:intron | 30.0% |
! | GAATCCTATTGTCTTATTGA+TGG | - | chr3.4:37759795-37759814 | MS.gene29428:intron | 30.0% |
! | GATGGGTTTAAAAGAATTGT+TGG | - | chr3.4:37758761-37758780 | MS.gene29428:intron | 30.0% |
! | TCAATGCCATTTAAAACAAG+AGG | + | chr3.4:37760373-37760392 | None:intergenic | 30.0% |
! | TCAATGTTTAGATGGGTTTA+AGG | - | chr3.4:37758652-37758671 | MS.gene29428:intron | 30.0% |
! | TGATAAATGAACAACCCTTT+TGG | - | chr3.4:37760195-37760214 | MS.gene29428:CDS | 30.0% |
! | TGGAATAAGTTGTAGGTTTT+GGG | - | chr3.4:37760331-37760350 | MS.gene29428:intron | 30.0% |
! | TTTTTATCACCTGCGATTAT+GGG | + | chr3.4:37759391-37759410 | None:intergenic | 30.0% |
!! | ATCTTCCATATTTTGGATTC+TGG | + | chr3.4:37758545-37758564 | None:intergenic | 30.0% |
!! | ATTTTATTTGGAATTGCTCG+GGG | - | chr3.4:37761046-37761065 | MS.gene29428:CDS | 30.0% |
!! | CATTTTATTTGGAATTGCTC+GGG | - | chr3.4:37761045-37761064 | MS.gene29428:CDS | 30.0% |
!!! | AACACTCCTCTTGTTTTAAA+TGG | - | chr3.4:37760364-37760383 | MS.gene29428:intron | 30.0% |
!!! | AGAGGATCATTGATTTTGTT+TGG | - | chr3.4:37759331-37759350 | MS.gene29428:intron | 30.0% |
AAGGCTCAACAAAACTCTAT+AGG | - | chr3.4:37758333-37758352 | MS.gene29428:intron | 35.0% | |
AAGTGAGTGTTCGAGAAAAT+TGG | - | chr3.4:37759213-37759232 | MS.gene29428:CDS | 35.0% | |
AATGACACTTGAAGATTGCA+AGG | - | chr3.4:37758826-37758845 | MS.gene29428:CDS | 35.0% | |
AATGGTTGTTCTATCTGGTT+TGG | - | chr3.4:37758911-37758930 | MS.gene29428:CDS | 35.0% | |
AATTGGGATGATCCATCTTT+AGG | - | chr3.4:37758257-37758276 | MS.gene29428:CDS | 35.0% | |
AGTAAAAGTTCATGTTTCCG+AGG | + | chr3.4:37759928-37759947 | None:intergenic | 35.0% | |
ATACCTTAATCAATGCCTCA+AGG | - | chr3.4:37759999-37760018 | MS.gene29428:intron | 35.0% | |
ATCCAAGAATGTGTAGTATC+TGG | + | chr3.4:37758797-37758816 | None:intergenic | 35.0% | |
CCATCTAAACATTGACACAT+AGG | + | chr3.4:37758647-37758666 | None:intergenic | 35.0% | |
CCTATGTGTCAATGTTTAGA+TGG | - | chr3.4:37758644-37758663 | MS.gene29428:CDS | 35.0% | |
CGAGGCAAAATTTCTATTAC+TGG | + | chr3.4:37759910-37759929 | None:intergenic | 35.0% | |
CTTTCCACATAAAGCTTTCA+GGG | + | chr3.4:37758316-37758335 | None:intergenic | 35.0% | |
GACAAGAAATTGCTGTCAAA+AGG | - | chr3.4:37760693-37760712 | MS.gene29428:CDS | 35.0% | |
GACTCAACTGGAACAAATAA+TGG | - | chr3.4:37758893-37758912 | MS.gene29428:CDS | 35.0% | |
GGATTCCAGAATCCAAAATA+TGG | - | chr3.4:37758537-37758556 | MS.gene29428:CDS | 35.0% | |
GTAATGGTAATTGGAGTTGT+GGG | - | chr3.4:37758726-37758745 | MS.gene29428:intron | 35.0% | |
TAATGGTAATTGGAGTTGTG+GGG | - | chr3.4:37758727-37758746 | MS.gene29428:intron | 35.0% | |
TACCTAACCGTAGCAAAATA+CGG | + | chr3.4:37760230-37760249 | None:intergenic | 35.0% | |
TACCTTAATCAATGCCTCAA+GGG | - | chr3.4:37760000-37760019 | MS.gene29428:intron | 35.0% | |
TACTCAAGTTTAGACTCAAC+TGG | - | chr3.4:37758881-37758900 | MS.gene29428:CDS | 35.0% | |
TATGAGTGTTAGCTACTATC+AGG | + | chr3.4:37759062-37759081 | None:intergenic | 35.0% | |
TATGCATCACAACTATCTTG+TGG | + | chr3.4:37758581-37758600 | None:intergenic | 35.0% | |
TCTCTTATGACAACAAGCTT+GGG | - | chr3.4:37760508-37760527 | MS.gene29428:intron | 35.0% | |
TTCTCTTATGACAACAAGCT+TGG | - | chr3.4:37760507-37760526 | MS.gene29428:intron | 35.0% | |
! | AACCGACAATACTACTGTTT+TGG | + | chr3.4:37759422-37759441 | None:intergenic | 35.0% |
! | GAAAATTGGAAAGAGAGTGT+TGG | - | chr3.4:37759227-37759246 | MS.gene29428:CDS | 35.0% |
! | GTGGAATAAGTTGTAGGTTT+TGG | - | chr3.4:37760330-37760349 | MS.gene29428:intron | 35.0% |
!! | TGTCCTAAGAGTATTGGTTA+AGG | - | chr3.4:37759881-37759900 | MS.gene29428:intron | 35.0% |
AAAAGGCTTTCAAGGAGTTC+TGG | - | chr3.4:37760710-37760729 | MS.gene29428:CDS | 40.0% | |
AAGACCCATTTCTAATGCAC+AGG | - | chr3.4:37759164-37759183 | MS.gene29428:CDS | 40.0% | |
AATCCATCAGTGGCATATTC+TGG | + | chr3.4:37761333-37761352 | None:intergenic | 40.0% | |
ACAAAAAAAGGGGTCTTGAG+AGG | - | chr3.4:37758216-37758235 | MS.gene29428:CDS | 40.0% | |
ACTGGATGGGACAAAAAAAG+GGG | - | chr3.4:37758206-37758225 | MS.gene29428:CDS | 40.0% | |
AGACCCATTTCTAATGCACA+GGG | - | chr3.4:37759165-37759184 | MS.gene29428:CDS | 40.0% | |
AGACTGGATGGGACAAAAAA+AGG | - | chr3.4:37758204-37758223 | MS.gene29428:CDS | 40.0% | |
ATACGGTGTGAACAACCAAA+AGG | + | chr3.4:37760213-37760232 | None:intergenic | 40.0% | |
ATATAGGGTACATTGCTCGA+TGG | - | chr3.4:37760671-37760690 | MS.gene29428:CDS | 40.0% | |
ATGCCCTGTGCATTAGAAAT+GGG | + | chr3.4:37759171-37759190 | None:intergenic | 40.0% | |
ATTGTGCCTTCAGGGTTATA+CGG | - | chr3.4:37760306-37760325 | MS.gene29428:intron | 40.0% | |
CACATAAAGCTTTCAGGGTT+TGG | + | chr3.4:37758311-37758330 | None:intergenic | 40.0% | |
CCAATTATTCCACTAGATCG+AGG | + | chr3.4:37758377-37758396 | None:intergenic | 40.0% | |
CCTCGATCTAGTGGAATAAT+TGG | - | chr3.4:37758374-37758393 | MS.gene29428:intron | 40.0% | |
CCTTTCCACATAAAGCTTTC+AGG | + | chr3.4:37758317-37758336 | None:intergenic | 40.0% | |
CGAATGGACGCTTCATATAT+TGG | - | chr3.4:37758983-37759002 | MS.gene29428:intron | 40.0% | |
CGTAATGGTAATTGGAGTTG+TGG | - | chr3.4:37758725-37758744 | MS.gene29428:intron | 40.0% | |
CTCTTATGACAACAAGCTTG+GGG | - | chr3.4:37760509-37760528 | MS.gene29428:intron | 40.0% | |
GAAGAAAGCTCACCTAAAGA+TGG | + | chr3.4:37758272-37758291 | None:intergenic | 40.0% | |
GACTGGATGGGACAAAAAAA+GGG | - | chr3.4:37758205-37758224 | MS.gene29428:CDS | 40.0% | |
GATGTGTGCGTAATGGTAAT+TGG | - | chr3.4:37758717-37758736 | MS.gene29428:intron | 40.0% | |
GGGAGAACAAACAGAATAGT+TGG | - | chr3.4:37761211-37761230 | MS.gene29428:CDS | 40.0% | |
GTGATGCATACAATGTCTGT+GGG | - | chr3.4:37758591-37758610 | MS.gene29428:CDS | 40.0% | |
GTTTGTCAACAATGAAGACG+AGG | - | chr3.4:37758427-37758446 | MS.gene29428:CDS | 40.0% | |
TACAATGTCTGTGGGGAAAA+TGG | - | chr3.4:37758599-37758618 | MS.gene29428:CDS | 40.0% | |
TACGGTGTGAACAACCAAAA+GGG | + | chr3.4:37760212-37760231 | None:intergenic | 40.0% | |
TACGGTGTGGAATAAGTTGT+AGG | - | chr3.4:37760324-37760343 | MS.gene29428:intron | 40.0% | |
TATGCCCTGTGCATTAGAAA+TGG | + | chr3.4:37759172-37759191 | None:intergenic | 40.0% | |
TGATCAAGCTACAATACGCA+AGG | - | chr3.4:37760473-37760492 | MS.gene29428:intron | 40.0% | |
TGATGCATACAATGTCTGTG+GGG | - | chr3.4:37758592-37758611 | MS.gene29428:CDS | 40.0% | |
TGCCAGATACTACACATTCT+TGG | - | chr3.4:37758792-37758811 | MS.gene29428:CDS | 40.0% | |
TGTGATGCATACAATGTCTG+TGG | - | chr3.4:37758590-37758609 | MS.gene29428:CDS | 40.0% | |
TTCAGTAGTCCTTGTGATGT+TGG | - | chr3.4:37759453-37759472 | MS.gene29428:intron | 40.0% | |
TTGCTGTCAAAAGGCTTTCA+AGG | - | chr3.4:37760702-37760721 | MS.gene29428:CDS | 40.0% | |
! | CAAACCCTGAAAGCTTTATG+TGG | - | chr3.4:37758309-37758328 | MS.gene29428:CDS | 40.0% |
! | CACACTCAAGAATAGTTCTG+TGG | - | chr3.4:37758463-37758482 | MS.gene29428:CDS | 40.0% |
! | CCTGAAAGCTTTATGTGGAA+AGG | - | chr3.4:37758314-37758333 | MS.gene29428:CDS | 40.0% |
! | GTTCACACCGTATTTTGCTA+CGG | - | chr3.4:37760220-37760239 | MS.gene29428:CDS | 40.0% |
! | GTTGTTGGTTGTTGTATCGA+AGG | - | chr3.4:37760803-37760822 | MS.gene29428:CDS | 40.0% |
! | TATTGGTTGTTTCCTTGCAG+CGG | - | chr3.4:37761297-37761316 | MS.gene29428:CDS | 40.0% |
! | TTTGGCTTAGCTAGAATGTG+TGG | - | chr3.4:37761172-37761191 | MS.gene29428:CDS | 40.0% |
!! | TGGATTCTGGAATCCAAATG+AGG | + | chr3.4:37758532-37758551 | None:intergenic | 40.0% |
AACAGTGGAATGCAATGGAC+TGG | - | chr3.4:37758687-37758706 | MS.gene29428:intron | 45.0% | |
AACTCTATAGGACAGCACCA+TGG | - | chr3.4:37758345-37758364 | MS.gene29428:intron | 45.0% | |
AATGCTAATGAGTGCCCTTG+AGG | + | chr3.4:37760017-37760036 | None:intergenic | 45.0% | |
AATGTATAGTGCGCATCGTG+TGG | + | chr3.4:37759278-37759297 | None:intergenic | 45.0% | |
AGGTGAATGCCAACATCACA+AGG | + | chr3.4:37759465-37759484 | None:intergenic | 45.0% | |
AGGTGAGCTTTCTTCAGCTA+TGG | - | chr3.4:37758277-37758296 | MS.gene29428:CDS | 45.0% | |
CAGCTTGAATTGTGCCTTCA+GGG | - | chr3.4:37760298-37760317 | MS.gene29428:intron | 45.0% | |
GATCTGAGAGTTTCACCAAG+TGG | - | chr3.4:37758944-37758963 | MS.gene29428:CDS | 45.0% | |
GTGGGGACAAAAAGAGAGAT+GGG | - | chr3.4:37758744-37758763 | MS.gene29428:intron | 45.0% | |
GTTTCCTTGCAGCGGTTATA+TGG | - | chr3.4:37761305-37761324 | MS.gene29428:CDS | 45.0% | |
TATGACAACAAGCTTGGGGA+AGG | - | chr3.4:37760513-37760532 | MS.gene29428:intron | 45.0% | |
TATTCCACTAGATCGAGGAC+CGG | + | chr3.4:37758372-37758391 | None:intergenic | 45.0% | |
TCCATTGCATTCCACTGTTG+TGG | + | chr3.4:37758686-37758705 | None:intergenic | 45.0% | |
TGTGGAGGTGATCAAATCGA+GGG | - | chr3.4:37761190-37761209 | MS.gene29428:CDS | 45.0% | |
TGTGGGGACAAAAAGAGAGA+TGG | - | chr3.4:37758743-37758762 | MS.gene29428:intron | 45.0% | |
! | CACCGTATTTTGCTACGGTT+AGG | - | chr3.4:37760225-37760244 | MS.gene29428:CDS | 45.0% |
!! | CTTTCAAGGAGTTCTGGACA+AGG | - | chr3.4:37760716-37760735 | MS.gene29428:CDS | 45.0% |
!! | GAGTTCTGGACAAGGACAAA+AGG | - | chr3.4:37760724-37760743 | MS.gene29428:CDS | 45.0% |
!! | TGCCCTTGAGGCATTGATTA+AGG | + | chr3.4:37760005-37760024 | None:intergenic | 45.0% |
!! | TTGAGAGGCGTTTAACTGCA+TGG | - | chr3.4:37758231-37758250 | MS.gene29428:CDS | 45.0% |
!!! | CGGTTTTGGACCAGTATACA+AGG | - | chr3.4:37760536-37760555 | MS.gene29428:intron | 45.0% |
!! | TCAATTATAAATAATATATA+GGG | - | chr3.4:37760656-37760675 | MS.gene29428:intron | 5.0% |
!! | TTCAATTATAAATAATATAT+AGG | - | chr3.4:37760655-37760674 | MS.gene29428:intron | 5.0% |
ACAGGTGGATGTGTGCGTAA+TGG | - | chr3.4:37758710-37758729 | MS.gene29428:intron | 50.0% | |
CCAGCTTGAATTGTGCCTTC+AGG | - | chr3.4:37760297-37760316 | MS.gene29428:intron | 50.0% | |
CTCTCTTGACCCATAATCGC+AGG | - | chr3.4:37759379-37759398 | MS.gene29428:intron | 50.0% | |
GCACCAGAATATGCCACTGA+TGG | - | chr3.4:37761327-37761346 | MS.gene29428:CDS | 50.0% | |
GCCACAACAGTGGAATGCAA+TGG | - | chr3.4:37758682-37758701 | MS.gene29428:intron | 50.0% | |
GGCTTAGCTAGAATGTGTGG+AGG | - | chr3.4:37761175-37761194 | MS.gene29428:CDS | 50.0% | |
GTGGAGGTGATCAAATCGAG+GGG | - | chr3.4:37761191-37761210 | MS.gene29428:CDS | 50.0% | |
GTGTGGAGGTGATCAAATCG+AGG | - | chr3.4:37761189-37761208 | MS.gene29428:CDS | 50.0% | |
TATAGGACAGCACCATGGAC+CGG | - | chr3.4:37758350-37758369 | MS.gene29428:intron | 50.0% | |
TCCACACCGTATAACCCTGA+AGG | + | chr3.4:37760315-37760334 | None:intergenic | 50.0% | |
! | CCTGAAGGCACAATTCAAGC+TGG | + | chr3.4:37760300-37760319 | None:intergenic | 50.0% |
!! | AATGCAATGGACTGGACAGG+TGG | - | chr3.4:37758695-37758714 | MS.gene29428:intron | 50.0% |
!! | CCAAATGAGGCGTTGACGAA+GGG | + | chr3.4:37758519-37758538 | None:intergenic | 50.0% |
!! | TCCAAATGAGGCGTTGACGA+AGG | + | chr3.4:37758520-37758539 | None:intergenic | 50.0% |
!! | TGGAATGCAATGGACTGGAC+AGG | - | chr3.4:37758692-37758711 | MS.gene29428:intron | 50.0% |
AGGCGAAATCGCCACAACAG+TGG | - | chr3.4:37758672-37758691 | MS.gene29428:intron | 55.0% | |
CCCTTCGTCAACGCCTCATT+TGG | - | chr3.4:37758516-37758535 | MS.gene29428:CDS | 55.0% | |
GACAACAAGCTTGGGGAAGG+CGG | - | chr3.4:37760516-37760535 | MS.gene29428:intron | 55.0% | |
GCCTTCAGGGTTATACGGTG+TGG | - | chr3.4:37760311-37760330 | MS.gene29428:intron | 55.0% | |
TCAAGCTGGCACGCATTCCA+AGG | + | chr3.4:37760286-37760305 | None:intergenic | 55.0% | |
! | AAGCTTGGGGAAGGCGGTTT+TGG | - | chr3.4:37760522-37760541 | MS.gene29428:intron | 55.0% |
! | GGTGCCATATAACCGCTGCA+AGG | + | chr3.4:37761312-37761331 | None:intergenic | 55.0% |
CTAGATCGAGGACCGGTCCA+TGG | + | chr3.4:37758365-37758384 | None:intergenic | 60.0% | |
TGGACCGGTCCTCGATCTAG+TGG | - | chr3.4:37758365-37758384 | MS.gene29428:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 37758198 | 37761467 | 37758198 | ID=MS.gene29428 |
chr3.4 | mRNA | 37758198 | 37761467 | 37758198 | ID=MS.gene29428.t1;Parent=MS.gene29428 |
chr3.4 | exon | 37760661 | 37761467 | 37760661 | ID=MS.gene29428.t1.exon1;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37760661 | 37761467 | 37760661 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
chr3.4 | exon | 37760151 | 37760264 | 37760151 | ID=MS.gene29428.t1.exon2;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37760151 | 37760264 | 37760151 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
chr3.4 | exon | 37759108 | 37759265 | 37759108 | ID=MS.gene29428.t1.exon3;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37759108 | 37759265 | 37759108 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
chr3.4 | exon | 37758778 | 37758988 | 37758778 | ID=MS.gene29428.t1.exon4;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37758778 | 37758988 | 37758778 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
chr3.4 | exon | 37758426 | 37758663 | 37758426 | ID=MS.gene29428.t1.exon5;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37758426 | 37758663 | 37758426 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
chr3.4 | exon | 37758198 | 37758348 | 37758198 | ID=MS.gene29428.t1.exon6;Parent=MS.gene29428.t1 |
chr3.4 | CDS | 37758198 | 37758348 | 37758198 | ID=cds.MS.gene29428.t1;Parent=MS.gene29428.t1 |
Gene Sequence |
Protein sequence |