Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32750.t1 | XP_003603229.1 | 98.3 | 241 | 4 | 0 | 1 | 241 | 64 | 304 | 2.00E-128 | 468.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32750.t1 | Q8IUS5 | 24.4 | 270 | 154 | 9 | 4 | 241 | 107 | 358 | 1.1e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32750.t1 | G7J939 | 98.3 | 241 | 4 | 0 | 1 | 241 | 64 | 304 | 1.5e-128 | 468.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene32750 | 0.8205 | 6.64E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene32750 | 0.820075 | 8.31E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene32750 | 0.862354 | 5.38E-64 | -1.69E-46 |
| MS.gene049669 | MS.gene32750 | 0.825546 | 4.42E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene32750 | 0.811997 | 5.29E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene32750 | 0.827542 | 1.48E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene32750 | 0.83294 | 7.10E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene32750 | 0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene32750 | -0.822516 | 2.27E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene32750 | 0.830802 | 2.39E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene32750 | 0.829461 | 5.08E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene32750 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene32750 | 0.827595 | 1.43E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene32750 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene32750 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene32750 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene32750 | 0.80152 | 8.66E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene32750 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene32750 | 0.821143 | 4.72E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene32750 | 0.820089 | 8.24E-53 | -1.69E-46 |
| MS.gene052389 | MS.gene32750 | 0.805316 | 1.42E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene32750 | 0.805264 | 1.45E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene32750 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene32750 | 0.806362 | 8.53E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene32750 | 0.816566 | 5.18E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene32750 | 0.821461 | 3.99E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene32750 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene32750 | 0.812882 | 3.39E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene32750 | -0.809418 | 1.91E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene32750 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene32750 | 0.818097 | 2.34E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene32750 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene32750 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene32750 | 0.841856 | 3.69E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene32750 | 0.864231 | 1.41E-64 | -1.69E-46 |
| MS.gene05659 | MS.gene32750 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene056779 | MS.gene32750 | 0.819355 | 1.21E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene32750 | 0.843756 | 1.15E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene32750 | 0.843558 | 1.30E-58 | -1.69E-46 |
| MS.gene058146 | MS.gene32750 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene32750 | 0.800753 | 1.24E-48 | -1.69E-46 |
| MS.gene059249 | MS.gene32750 | 0.813389 | 2.62E-51 | -1.69E-46 |
| MS.gene059550 | MS.gene32750 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene059609 | MS.gene32750 | 0.805797 | 1.12E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene32750 | 0.819909 | 9.06E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene32750 | 0.820624 | 6.22E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene32750 | 0.822942 | 1.81E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene32750 | 0.800532 | 1.38E-48 | -1.69E-46 |
| MS.gene060685 | MS.gene32750 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene32750 | 0.810289 | 1.24E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene32750 | 0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene32750 | 0.808996 | 2.35E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene32750 | 0.809355 | 1.97E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene32750 | -0.813536 | 2.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32750 | MS.gene071915 | PPI |
| MS.gene32750 | MS.gene047420 | PPI |
| MS.gene32750 | MS.gene01173 | PPI |
| MS.gene32750 | MS.gene002205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32750.t1 | MTR_3g105290 | 98.340 | 241 | 4 | 0 | 1 | 241 | 64 | 304 | 1.50e-175 | 484 |
| MS.gene32750.t1 | MTR_3g105290 | 97.778 | 180 | 4 | 0 | 1 | 180 | 64 | 243 | 1.31e-128 | 363 |
| MS.gene32750.t1 | MTR_3g087050 | 39.241 | 237 | 141 | 3 | 2 | 237 | 64 | 298 | 1.22e-57 | 186 |
| MS.gene32750.t1 | MTR_5g020250 | 40.506 | 237 | 135 | 5 | 1 | 237 | 72 | 302 | 2.76e-54 | 177 |
| MS.gene32750.t1 | MTR_8g077290 | 40.948 | 232 | 133 | 4 | 6 | 237 | 78 | 305 | 8.73e-54 | 176 |
| MS.gene32750.t1 | MTR_5g064035 | 37.657 | 239 | 144 | 4 | 2 | 237 | 62 | 298 | 2.81e-53 | 174 |
| MS.gene32750.t1 | MTR_5g020320 | 39.914 | 233 | 136 | 4 | 6 | 238 | 69 | 297 | 5.09e-53 | 173 |
| MS.gene32750.t1 | MTR_2g008880 | 38.655 | 238 | 142 | 4 | 2 | 237 | 66 | 301 | 3.36e-52 | 172 |
| MS.gene32750.t1 | MTR_5g020260 | 39.916 | 238 | 131 | 6 | 5 | 238 | 74 | 303 | 2.78e-50 | 167 |
| MS.gene32750.t1 | MTR_8g077290 | 42.929 | 198 | 109 | 4 | 6 | 203 | 78 | 271 | 1.32e-46 | 156 |
| MS.gene32750.t1 | MTR_8g090060 | 31.933 | 238 | 125 | 4 | 2 | 237 | 62 | 264 | 3.48e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32750.t1 | AT5G21950 | 50.833 | 240 | 117 | 1 | 2 | 241 | 67 | 305 | 1.45e-90 | 270 |
| MS.gene32750.t1 | AT5G21950 | 50.833 | 240 | 117 | 1 | 2 | 241 | 119 | 357 | 8.42e-90 | 269 |
| MS.gene32750.t1 | AT4G33180 | 52.301 | 239 | 111 | 3 | 2 | 238 | 68 | 305 | 6.86e-86 | 258 |
| MS.gene32750.t1 | AT5G21950 | 51.980 | 202 | 96 | 1 | 2 | 203 | 67 | 267 | 5.15e-76 | 231 |
| MS.gene32750.t1 | AT5G09430 | 36.709 | 237 | 147 | 3 | 2 | 237 | 73 | 307 | 7.12e-52 | 171 |
| MS.gene32750.t1 | AT4G39955 | 36.555 | 238 | 147 | 4 | 2 | 237 | 62 | 297 | 5.53e-51 | 169 |
| MS.gene32750.t1 | AT1G78210 | 37.083 | 240 | 145 | 5 | 2 | 237 | 64 | 301 | 1.99e-49 | 164 |
| MS.gene32750.t1 | AT5G21950 | 49.660 | 147 | 73 | 1 | 2 | 148 | 67 | 212 | 3.61e-47 | 156 |
| MS.gene32750.t1 | AT5G21950 | 49.660 | 147 | 73 | 1 | 2 | 148 | 67 | 212 | 3.61e-47 | 156 |
| MS.gene32750.t1 | AT5G21950 | 49.660 | 147 | 73 | 1 | 2 | 148 | 119 | 264 | 1.66e-46 | 155 |
| MS.gene32750.t1 | AT5G21950 | 49.660 | 147 | 73 | 1 | 2 | 148 | 119 | 264 | 1.66e-46 | 155 |
| MS.gene32750.t1 | AT4G33180 | 53.333 | 135 | 61 | 2 | 2 | 135 | 68 | 201 | 2.16e-45 | 151 |
| MS.gene32750.t1 | AT2G18360 | 37.500 | 232 | 141 | 4 | 6 | 237 | 79 | 306 | 3.09e-45 | 154 |
| MS.gene32750.t1 | AT1G72620 | 36.402 | 239 | 143 | 6 | 4 | 237 | 97 | 331 | 4.86e-45 | 154 |
| MS.gene32750.t1 | AT1G17430 | 36.100 | 241 | 143 | 6 | 4 | 237 | 93 | 329 | 5.10e-45 | 154 |
| MS.gene32750.t1 | AT4G36610 | 36.638 | 232 | 143 | 4 | 6 | 237 | 77 | 304 | 4.38e-44 | 150 |
| MS.gene32750.t1 | AT2G18360 | 38.384 | 198 | 118 | 4 | 6 | 203 | 79 | 272 | 1.09e-37 | 133 |
Find 52 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCGGTTGTAAGAAATTT+AGG | 0.175192 | 3.1:+83147432 | None:intergenic |
| TGGAATAGTTGCGTATAATT+TGG | 0.256443 | 3.1:-83149523 | MS.gene32750:CDS |
| GTTCCCGATCTAATCTTCTT+TGG | 0.272608 | 3.1:-83149660 | MS.gene32750:CDS |
| TTGCAGGGTAATAAGTAAAA+AGG | 0.295321 | 3.1:-83147528 | MS.gene32750:intron |
| AGAGATTATACTCAGATAAT+AGG | 0.333887 | 3.1:-83149120 | MS.gene32750:CDS |
| AAAGTAGTTATTGCAAGTTC+TGG | 0.338855 | 3.1:-83149471 | MS.gene32750:CDS |
| GAAAAGATGGAGCTTCTAAA+TGG | 0.345980 | 3.1:-83149094 | MS.gene32750:CDS |
| TTTCTTGAGGGACTTCTTAA+GGG | 0.369669 | 3.1:-83149298 | MS.gene32750:intron |
| GGCAAGATTGGAATTGATAA+AGG | 0.387643 | 3.1:-83147507 | MS.gene32750:CDS |
| AAACATTTCACCTCTTCAAC+AGG | 0.392798 | 3.1:-83149044 | MS.gene32750:intron |
| GGAAAATTGTTGGAGAAGAT+AGG | 0.395031 | 3.1:-83149582 | MS.gene32750:CDS |
| TATAATTTGGCGAAGATGTT+GGG | 0.398616 | 3.1:-83149510 | MS.gene32750:CDS |
| ATACATACTCCTTCAATTCA+TGG | 0.401600 | 3.1:+83148889 | None:intergenic |
| CTTCTAAATGGATTGTCTAT+AGG | 0.430621 | 3.1:-83149082 | MS.gene32750:CDS |
| ATAATATTGTTGAATTCCTC+CGG | 0.432661 | 3.1:+83147455 | None:intergenic |
| AGAGAAATTTCAAGCGGAAT+CGG | 0.437076 | 3.1:-83149607 | MS.gene32750:CDS |
| TTCAACTGTTGAGGAGAAGA+AGG | 0.453370 | 3.1:+83149372 | None:intergenic |
| TCCAGGAAGTTCTCGTATTG+TGG | 0.474193 | 3.1:-83148947 | MS.gene32750:intron |
| GTCCTATGGCGATGTGGCAA+TGG | 0.477842 | 3.1:-83149725 | None:intergenic |
| AATTCATGGGCCATCTGCAC+GGG | 0.491317 | 3.1:+83148903 | None:intergenic |
| AAATGGATTGTCTATAGGAC+AGG | 0.491723 | 3.1:-83149077 | MS.gene32750:CDS |
| GCAGATGGCCCATGAATTGA+AGG | 0.496257 | 3.1:-83148898 | MS.gene32750:CDS |
| GTGGCGTTGTTGAAAAGAGC+TGG | 0.502078 | 3.1:-83149423 | MS.gene32750:CDS |
| AGATAATAGGAAGGAAAAGA+TGG | 0.510309 | 3.1:-83149107 | MS.gene32750:CDS |
| GTATAATTTGGCGAAGATGT+TGG | 0.512839 | 3.1:-83149511 | MS.gene32750:CDS |
| CCAGGAAGTTCTCGTATTGT+GGG | 0.514777 | 3.1:-83148946 | MS.gene32750:intron |
| CAATATATTTCCCGTGCAGA+TGG | 0.516669 | 3.1:-83148913 | MS.gene32750:CDS |
| CACGTGGTGGGAACGAGTTA+TGG | 0.520296 | 3.1:-83149546 | MS.gene32750:CDS |
| AAATTTCAAGCGGAATCGGT+TGG | 0.521716 | 3.1:-83149603 | MS.gene32750:CDS |
| GGAATCGGTTGGAAAATTGT+TGG | 0.527438 | 3.1:-83149592 | MS.gene32750:CDS |
| TCTCCAAAGAAGATTAGATC+GGG | 0.527590 | 3.1:+83149657 | None:intergenic |
| TTCTCCAAAGAAGATTAGAT+CGG | 0.537749 | 3.1:+83149656 | None:intergenic |
| TGTGCCACAAATTGAAAAGC+CGG | 0.542764 | 3.1:-83147474 | MS.gene32750:CDS |
| GTTGTTGAAAAGAGCTGGAT+TGG | 0.546954 | 3.1:-83149418 | MS.gene32750:CDS |
| AGAGGTTGAAGTGTGGAGCT+AGG | 0.550512 | 3.1:+83149685 | None:intergenic |
| TACATACTCCTTCAATTCAT+GGG | 0.553495 | 3.1:+83148890 | None:intergenic |
| CAATTCATGGGCCATCTGCA+CGG | 0.558178 | 3.1:+83148902 | None:intergenic |
| CGCCATTGCCACATCGCCAT+AGG | 0.577637 | 3.1:+83149723 | None:intergenic |
| CATTTGGTTACCTGTTGAAG+AGG | 0.611654 | 3.1:+83149034 | None:intergenic |
| ATTATACTCAGATAATAGGA+AGG | 0.616496 | 3.1:-83149116 | MS.gene32750:CDS |
| CAGGAAGTTCTCGTATTGTG+GGG | 0.624648 | 3.1:-83148945 | MS.gene32750:CDS |
| AGGAAGTTCTCGTATTGTGG+GGG | 0.630670 | 3.1:-83148944 | MS.gene32750:CDS |
| AAGAACAGAGAAATTTCAAG+CGG | 0.633582 | 3.1:-83149613 | MS.gene32750:CDS |
| GTTTCGGTCCTATGGCGATG+TGG | 0.638713 | 3.1:-83149731 | None:intergenic |
| AAGATTGGAATTGATAAAGG+AGG | 0.650039 | 3.1:-83147504 | MS.gene32750:CDS |
| GTGGTGGGAACGAGTTATGG+TGG | 0.651158 | 3.1:-83149543 | MS.gene32750:CDS |
| AGATTAGATCGGGAACGTAG+AGG | 0.675856 | 3.1:+83149667 | None:intergenic |
| GGAAGTTCTCGTATTGTGGG+GGG | 0.676838 | 3.1:-83148943 | MS.gene32750:CDS |
| GGAACGTAGAGGTTGAAGTG+TGG | 0.688244 | 3.1:+83149678 | None:intergenic |
| CATAACTCGTTCCCACCACG+TGG | 0.694739 | 3.1:+83149547 | None:intergenic |
| GCCACAAATTGAAAAGCCGG+AGG | 0.697095 | 3.1:-83147471 | MS.gene32750:CDS |
| TATGACAAAGAATCATAACG+TGG | 0.759539 | 3.1:-83149442 | MS.gene32750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTCTCAAATATTTTAA+TGG | - | chr3.1:83148854-83148873 | MS.gene32750:intron | 10.0% |
| !!! | TTGTAATTTTCTTAAAAAAA+GGG | + | chr3.1:83149338-83149357 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTTCTTAAAAAA+AGG | + | chr3.1:83149339-83149358 | None:intergenic | 10.0% |
| !! | ACTTATAATAAGTTCATAAT+GGG | - | chr3.1:83148342-83148361 | MS.gene32750:intron | 15.0% |
| !! | TGAATGAAATTCAATAATAA+GGG | + | chr3.1:83148657-83148676 | None:intergenic | 15.0% |
| !! | TTGAATGAAATTCAATAATA+AGG | + | chr3.1:83148658-83148677 | None:intergenic | 15.0% |
| !!! | ATGTTATTTGAAAAGAAAAT+TGG | + | chr3.1:83148312-83148331 | None:intergenic | 15.0% |
| !!! | TGTAATTTTCTTAAAAAAAG+GGG | + | chr3.1:83149337-83149356 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATTTTGTTTGAG+AGG | - | chr3.1:83149531-83149550 | MS.gene32750:CDS | 15.0% |
| !! | ACAAAATATTATGTAGGATT+TGG | + | chr3.1:83148284-83148303 | None:intergenic | 20.0% |
| !! | ACACAATTCTTCTTAAAAAA+AGG | - | chr3.1:83148749-83148768 | MS.gene32750:intron | 20.0% |
| !! | CACTTATAATAAGTTCATAA+TGG | - | chr3.1:83148341-83148360 | MS.gene32750:intron | 20.0% |
| !!! | ACATATTTAATTTACTCGTA+CGG | + | chr3.1:83148144-83148163 | None:intergenic | 20.0% |
| !!! | ATCTAGTATTCCAATTTTAT+TGG | + | chr3.1:83148434-83148453 | None:intergenic | 20.0% |
| !!! | ATTCAATAATAAGGGTATAA+TGG | + | chr3.1:83148649-83148668 | None:intergenic | 20.0% |
| !!! | TCTAGTATTCCAATTTTATT+GGG | + | chr3.1:83148433-83148452 | None:intergenic | 20.0% |
| ! | AAGAAAAAATTAGGCACAAA+AGG | + | chr3.1:83147835-83147854 | None:intergenic | 25.0% |
| ! | AATAAGTAAAAAGGCAAGAT+TGG | - | chr3.1:83149628-83149647 | MS.gene32750:CDS | 25.0% |
| ! | AGAAAAAATTAGGCACAAAA+GGG | + | chr3.1:83147834-83147853 | None:intergenic | 25.0% |
| ! | AGAGATTATACTCAGATAAT+AGG | - | chr3.1:83148027-83148046 | MS.gene32750:intron | 25.0% |
| ! | ATAACCTATGGATGATATTT+GGG | + | chr3.1:83148470-83148489 | None:intergenic | 25.0% |
| ! | ATAATATTGTTGAATTCCTC+CGG | + | chr3.1:83149695-83149714 | None:intergenic | 25.0% |
| ! | ATATAAGATTGATTGATTGG+TGG | - | chr3.1:83148365-83148384 | MS.gene32750:intron | 25.0% |
| ! | ATTATACTCAGATAATAGGA+AGG | - | chr3.1:83148031-83148050 | MS.gene32750:intron | 25.0% |
| ! | ATTTCGGTTGTAAGAAATTT+AGG | + | chr3.1:83149718-83149737 | None:intergenic | 25.0% |
| ! | CTCAAAATAATAGTCGTTTA+AGG | + | chr3.1:83148817-83148836 | None:intergenic | 25.0% |
| ! | CTTCTTATTAACTTATTGCA+GGG | - | chr3.1:83149604-83149623 | MS.gene32750:CDS | 25.0% |
| ! | GCAGAAACAAAATATTATGT+AGG | + | chr3.1:83148290-83148309 | None:intergenic | 25.0% |
| ! | TATAACCTATGGATGATATT+TGG | + | chr3.1:83148471-83148490 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr3.1:83148687-83148706 | MS.gene32750:intron | 25.0% |
| ! | TCCTTATTAATTGTAGTTAG+TGG | + | chr3.1:83148691-83148710 | None:intergenic | 25.0% |
| !! | ACATTTCAATAAACCCATTT+TGG | + | chr3.1:83149445-83149464 | None:intergenic | 25.0% |
| !! | TTCACTATGTTTGGAATTTA+CGG | - | chr3.1:83149221-83149240 | MS.gene32750:intron | 25.0% |
| !!! | ATCAAATTTTTCAACTGTTG+AGG | + | chr3.1:83147787-83147806 | None:intergenic | 25.0% |
| !!! | TCTTACATTTGATTTGATGA+TGG | - | chr3.1:83149154-83149173 | MS.gene32750:intron | 25.0% |
| AAAGTAGTTATTGCAAGTTC+TGG | - | chr3.1:83147676-83147695 | MS.gene32750:intron | 30.0% | |
| AAGAACAGAGAAATTTCAAG+CGG | - | chr3.1:83147534-83147553 | MS.gene32750:intron | 30.0% | |
| AAGATTGGAATTGATAAAGG+AGG | - | chr3.1:83149643-83149662 | MS.gene32750:CDS | 30.0% | |
| AAGTCCCTCAAGAAAAAATT+AGG | + | chr3.1:83147844-83147863 | None:intergenic | 30.0% | |
| AATGGAGGTAGTGAAAAAAA+GGG | - | chr3.1:83149385-83149404 | MS.gene32750:CDS | 30.0% | |
| AGATAATAGGAAGGAAAAGA+TGG | - | chr3.1:83148040-83148059 | MS.gene32750:intron | 30.0% | |
| ATACATACTCCTTCAATTCA+TGG | + | chr3.1:83148261-83148280 | None:intergenic | 30.0% | |
| ATCATCATCATCATAACCTA+TGG | + | chr3.1:83149111-83149130 | None:intergenic | 30.0% | |
| ATTTCACATTACTCATATCC+AGG | - | chr3.1:83148183-83148202 | MS.gene32750:intron | 30.0% | |
| CAGAACTCTAAACTCTATAT+GGG | + | chr3.1:83149046-83149065 | None:intergenic | 30.0% | |
| CCTGCAATAAGTTAATAAGA+AGG | + | chr3.1:83149606-83149625 | None:intergenic | 30.0% | |
| CCTTCTTATTAACTTATTGC+AGG | - | chr3.1:83149603-83149622 | MS.gene32750:CDS | 30.0% | |
| GGGATATAAGATTGATTGAT+TGG | - | chr3.1:83148362-83148381 | MS.gene32750:intron | 30.0% | |
| GTGATGTGAAATTACCAAAA+TGG | - | chr3.1:83149311-83149330 | MS.gene32750:CDS | 30.0% | |
| TAATGGAGGTAGTGAAAAAA+AGG | - | chr3.1:83149384-83149403 | MS.gene32750:CDS | 30.0% | |
| TACATACTCCTTCAATTCAT+GGG | + | chr3.1:83148260-83148279 | None:intergenic | 30.0% | |
| TATAATTTGGCGAAGATGTT+GGG | - | chr3.1:83147637-83147656 | MS.gene32750:intron | 30.0% | |
| TATGACAAAGAATCATAACG+TGG | - | chr3.1:83147705-83147724 | MS.gene32750:intron | 30.0% | |
| TCAGAACTCTAAACTCTATA+TGG | + | chr3.1:83149047-83149066 | None:intergenic | 30.0% | |
| TCATCATCATCATAACCTAT+GGG | + | chr3.1:83149110-83149129 | None:intergenic | 30.0% | |
| TCTATATGGGAAATGTTAAC+CGG | + | chr3.1:83149033-83149052 | None:intergenic | 30.0% | |
| TGGAATAGTTGCGTATAATT+TGG | - | chr3.1:83147624-83147643 | MS.gene32750:intron | 30.0% | |
| TTCTCCAAAGAAGATTAGAT+CGG | + | chr3.1:83147494-83147513 | None:intergenic | 30.0% | |
| TTGCAGGGTAATAAGTAAAA+AGG | - | chr3.1:83149619-83149638 | MS.gene32750:CDS | 30.0% | |
| ! | AGGTTTGTGCACAATTTTTA+AGG | + | chr3.1:83148797-83148816 | None:intergenic | 30.0% |
| ! | ATCAATCCATTGGACAATTT+TGG | + | chr3.1:83148503-83148522 | None:intergenic | 30.0% |
| ! | ATTGATTGATTGGTGGTTAT+GGG | - | chr3.1:83148372-83148391 | MS.gene32750:intron | 30.0% |
| ! | TCAATCCATTGGACAATTTT+GGG | + | chr3.1:83148502-83148521 | None:intergenic | 30.0% |
| ! | TCACTATGTTTGGAATTTAC+GGG | - | chr3.1:83149222-83149241 | MS.gene32750:intron | 30.0% |
| ! | TTTCAATAAACCCATTTTGG+CGG | + | chr3.1:83149442-83149461 | None:intergenic | 30.0% |
| !! | ATGGTTGATTTTTGCTCTTT+TGG | - | chr3.1:83149173-83149192 | MS.gene32750:intron | 30.0% |
| !! | ATTTTAATGGTCATGCTAAC+CGG | - | chr3.1:83148867-83148886 | MS.gene32750:intron | 30.0% |
| !! | CTTCTAAATGGATTGTCTAT+AGG | - | chr3.1:83148065-83148084 | MS.gene32750:intron | 30.0% |
| !!! | TGTGCCTAATTTTTTCTTGA+GGG | - | chr3.1:83147837-83147856 | MS.gene32750:intron | 30.0% |
| !!! | TTGTGCCTAATTTTTTCTTG+AGG | - | chr3.1:83147836-83147855 | MS.gene32750:intron | 30.0% |
| AAACATTTCACCTCTTCAAC+AGG | - | chr3.1:83148103-83148122 | MS.gene32750:intron | 35.0% | |
| ACAAGCAGTCCCAATAAAAT+TGG | - | chr3.1:83148421-83148440 | MS.gene32750:intron | 35.0% | |
| ACACCATACATACATGGTAT+TGG | - | chr3.1:83147931-83147950 | MS.gene32750:intron | 35.0% | |
| ACGTAATTTGAACTCTCGTA+TGG | - | chr3.1:83147955-83147974 | MS.gene32750:intron | 35.0% | |
| AGAGAAATTTCAAGCGGAAT+CGG | - | chr3.1:83147540-83147559 | MS.gene32750:intron | 35.0% | |
| AGATGAAAGAACACATGGAA+GGG | - | chr3.1:83149277-83149296 | MS.gene32750:intron | 35.0% | |
| ATGAAATGCGATCAATCCAT+TGG | + | chr3.1:83148513-83148532 | None:intergenic | 35.0% | |
| CATCATCATCATAACCTATG+GGG | + | chr3.1:83149109-83149128 | None:intergenic | 35.0% | |
| CATGTATGCTTCACTATGTT+TGG | - | chr3.1:83149212-83149231 | MS.gene32750:intron | 35.0% | |
| GAAAAGATGGAGCTTCTAAA+TGG | - | chr3.1:83148053-83148072 | MS.gene32750:intron | 35.0% | |
| GAACTCTCGTATGGTAAAAA+GGG | - | chr3.1:83147964-83147983 | MS.gene32750:intron | 35.0% | |
| GGAAAATTGTTGGAGAAGAT+AGG | - | chr3.1:83147565-83147584 | MS.gene32750:intron | 35.0% | |
| GGCAAGATTGGAATTGATAA+AGG | - | chr3.1:83149640-83149659 | MS.gene32750:CDS | 35.0% | |
| GTACCAATACCATGTATGTA+TGG | + | chr3.1:83147937-83147956 | None:intergenic | 35.0% | |
| GTATAATTTGGCGAAGATGT+TGG | - | chr3.1:83147636-83147655 | MS.gene32750:intron | 35.0% | |
| GTGAATACACCATACATACA+TGG | - | chr3.1:83147925-83147944 | MS.gene32750:intron | 35.0% | |
| TACTTCCTTAACCAGAATCA+TGG | + | chr3.1:83148896-83148915 | None:intergenic | 35.0% | |
| TAGATCCCAAAATTGTCCAA+TGG | - | chr3.1:83148494-83148513 | MS.gene32750:intron | 35.0% | |
| TCGTATGGTAAAAAGGGAAA+GGG | - | chr3.1:83147970-83147989 | MS.gene32750:intron | 35.0% | |
| TCTCCAAAGAAGATTAGATC+GGG | + | chr3.1:83147493-83147512 | None:intergenic | 35.0% | |
| TGAACTCTCGTATGGTAAAA+AGG | - | chr3.1:83147963-83147982 | MS.gene32750:intron | 35.0% | |
| TTAGCCCAAATATCATCCAT+AGG | - | chr3.1:83148463-83148482 | MS.gene32750:intron | 35.0% | |
| TTTCTTGAGGGACTTCTTAA+GGG | - | chr3.1:83147849-83147868 | MS.gene32750:intron | 35.0% | |
| ! | AAATGTTAACCGGTGTTTTC+AGG | + | chr3.1:83149023-83149042 | None:intergenic | 35.0% |
| ! | AATGTTAACCGGTGTTTTCA+GGG | + | chr3.1:83149022-83149041 | None:intergenic | 35.0% |
| ! | CTTAAAAAAAGGGGCCATTT+TGG | + | chr3.1:83149328-83149347 | None:intergenic | 35.0% |
| ! | GATAAGTTGACATCATTACG+TGG | - | chr3.1:83149065-83149084 | MS.gene32750:CDS | 35.0% |
| ! | GATTGATTGATTGGTGGTTA+TGG | - | chr3.1:83148371-83148390 | MS.gene32750:intron | 35.0% |
| ! | GGGATCTAGTTTATAACCTA+TGG | + | chr3.1:83148482-83148501 | None:intergenic | 35.0% |
| ! | TTTTCTTGAGGGACTTCTTA+AGG | - | chr3.1:83147848-83147867 | MS.gene32750:intron | 35.0% |
| !! | AAATGGATTGTCTATAGGAC+AGG | - | chr3.1:83148070-83148089 | MS.gene32750:intron | 35.0% |
| !! | TTTTTGCTCTTTTGGAGACT+TGG | - | chr3.1:83149181-83149200 | MS.gene32750:intron | 35.0% |
| !!! | AGACACTTATTTTGAGACGA+AGG | + | chr3.1:83148554-83148573 | None:intergenic | 35.0% |
| AAAGAGAGAACTGAGGGAAT+AGG | - | chr3.1:83149249-83149268 | MS.gene32750:intron | 40.0% | |
| AAATTTCAAGCGGAATCGGT+TGG | - | chr3.1:83147544-83147563 | MS.gene32750:intron | 40.0% | |
| AACAACTCGTGTAAGTCATG+TGG | + | chr3.1:83149582-83149601 | None:intergenic | 40.0% | |
| AAGAGAGAACTGAGGGAATA+GGG | - | chr3.1:83149250-83149269 | MS.gene32750:intron | 40.0% | |
| ACAACTCGTGTAAGTCATGT+GGG | + | chr3.1:83149581-83149600 | None:intergenic | 40.0% | |
| CAATATATTTCCCGTGCAGA+TGG | - | chr3.1:83148234-83148253 | MS.gene32750:intron | 40.0% | |
| CATAGGCATGTGTATAATGG+AGG | - | chr3.1:83149370-83149389 | MS.gene32750:CDS | 40.0% | |
| CATTTGGTTACCTGTTGAAG+AGG | + | chr3.1:83148116-83148135 | None:intergenic | 40.0% | |
| CCACATAGGCATGTGTATAA+TGG | - | chr3.1:83149367-83149386 | MS.gene32750:CDS | 40.0% | |
| CCATTATACACATGCCTATG+TGG | + | chr3.1:83149370-83149389 | None:intergenic | 40.0% | |
| CTCGTATGGTAAAAAGGGAA+AGG | - | chr3.1:83147969-83147988 | MS.gene32750:intron | 40.0% | |
| GAGAGAGATGAAAGAACACA+TGG | - | chr3.1:83149272-83149291 | MS.gene32750:intron | 40.0% | |
| GAGATGAAAGAACACATGGA+AGG | - | chr3.1:83149276-83149295 | MS.gene32750:intron | 40.0% | |
| GGAATCGGTTGGAAAATTGT+TGG | - | chr3.1:83147555-83147574 | MS.gene32750:intron | 40.0% | |
| GTTCCCGATCTAATCTTCTT+TGG | - | chr3.1:83147487-83147506 | MS.gene32750:CDS | 40.0% | |
| GTTGTTGAAAAGAGCTGGAT+TGG | - | chr3.1:83147729-83147748 | MS.gene32750:intron | 40.0% | |
| TACAAAACAGCCATCCACAT+AGG | - | chr3.1:83149353-83149372 | MS.gene32750:CDS | 40.0% | |
| TATACACATGCCTATGTGGA+TGG | + | chr3.1:83149366-83149385 | None:intergenic | 40.0% | |
| TCAATTTCTTGGCCTAGGTA+GGG | + | chr3.1:83148402-83148421 | None:intergenic | 40.0% | |
| TGTGCCACAAATTGAAAAGC+CGG | - | chr3.1:83149673-83149692 | MS.gene32750:CDS | 40.0% | |
| TTAACCAGAATCATGGACAC+CGG | + | chr3.1:83148889-83148908 | None:intergenic | 40.0% | |
| TTCAACTGTTGAGGAGAAGA+AGG | + | chr3.1:83147778-83147797 | None:intergenic | 40.0% | |
| AACCAATGCCCTGAAAACAC+CGG | - | chr3.1:83149011-83149030 | MS.gene32750:intron | 45.0% | |
| AACTGAAACCACCGCCAAAA+TGG | - | chr3.1:83149428-83149447 | MS.gene32750:CDS | 45.0% | |
| ACTGAAACCACCGCCAAAAT+GGG | - | chr3.1:83149429-83149448 | MS.gene32750:CDS | 45.0% | |
| AGAACACATGGAAGGGTTTG+AGG | - | chr3.1:83149284-83149303 | MS.gene32750:intron | 45.0% | |
| AGATTAGATCGGGAACGTAG+AGG | + | chr3.1:83147483-83147502 | None:intergenic | 45.0% | |
| AGGAAGTTCTCGTATTGTGG+GGG | - | chr3.1:83148203-83148222 | MS.gene32750:intron | 45.0% | |
| CAGGAAGTTCTCGTATTGTG+GGG | - | chr3.1:83148202-83148221 | MS.gene32750:intron | 45.0% | |
| CCAGGAAGTTCTCGTATTGT+GGG | - | chr3.1:83148201-83148220 | MS.gene32750:intron | 45.0% | |
| GAACACATGGAAGGGTTTGA+GGG | - | chr3.1:83149285-83149304 | MS.gene32750:intron | 45.0% | |
| GCTTGTCAATTTCTTGGCCT+AGG | + | chr3.1:83148407-83148426 | None:intergenic | 45.0% | |
| GGAGAGAAAGAGAGAACTGA+GGG | - | chr3.1:83149243-83149262 | MS.gene32750:intron | 45.0% | |
| GGGACTGCTTGTCAATTTCT+TGG | + | chr3.1:83148413-83148432 | None:intergenic | 45.0% | |
| GTCAATTTCTTGGCCTAGGT+AGG | + | chr3.1:83148403-83148422 | None:intergenic | 45.0% | |
| GTTATGGGTTTACCCTACCT+AGG | - | chr3.1:83148387-83148406 | MS.gene32750:intron | 45.0% | |
| TACTCGTACGGATGCACATT+TGG | + | chr3.1:83148132-83148151 | None:intergenic | 45.0% | |
| TCCAGGAAGTTCTCGTATTG+TGG | - | chr3.1:83148200-83148219 | MS.gene32750:intron | 45.0% | |
| ! | GGTGTCCATGATTCTGGTTA+AGG | - | chr3.1:83148888-83148907 | MS.gene32750:intron | 45.0% |
| ! | TCCTCCGGCTTTTCAATTTG+TGG | + | chr3.1:83149680-83149699 | None:intergenic | 45.0% |
| !! | CAATAAACCCATTTTGGCGG+TGG | + | chr3.1:83149439-83149458 | None:intergenic | 45.0% |
| AATTCATGGGCCATCTGCAC+GGG | + | chr3.1:83148247-83148266 | None:intergenic | 50.0% | |
| AGAGGTTGAAGTGTGGAGCT+AGG | + | chr3.1:83147465-83147484 | None:intergenic | 50.0% | |
| CAATTCATGGGCCATCTGCA+CGG | + | chr3.1:83148248-83148267 | None:intergenic | 50.0% | |
| CCCACAATACGAGAACTTCC+TGG | + | chr3.1:83148204-83148223 | None:intergenic | 50.0% | |
| CTAACCGGTGTCCATGATTC+TGG | - | chr3.1:83148882-83148901 | MS.gene32750:intron | 50.0% | |
| CTCACTCTTCTACACCCCAT+AGG | - | chr3.1:83149092-83149111 | MS.gene32750:CDS | 50.0% | |
| GCAGATGGCCCATGAATTGA+AGG | - | chr3.1:83148249-83148268 | MS.gene32750:intron | 50.0% | |
| GCCACAAATTGAAAAGCCGG+AGG | - | chr3.1:83149676-83149695 | MS.gene32750:CDS | 50.0% | |
| GGAACGTAGAGGTTGAAGTG+TGG | + | chr3.1:83147472-83147491 | None:intergenic | 50.0% | |
| GGAAGTTCTCGTATTGTGGG+GGG | - | chr3.1:83148204-83148223 | MS.gene32750:intron | 50.0% | |
| GGGAGAGAAAGAGAGAACTG+AGG | - | chr3.1:83149242-83149261 | MS.gene32750:intron | 50.0% | |
| GTGGCGTTGTTGAAAAGAGC+TGG | - | chr3.1:83147724-83147743 | MS.gene32750:intron | 50.0% | |
| TCGTGTAAGTCATGTGGGCA+TGG | + | chr3.1:83149576-83149595 | None:intergenic | 50.0% | |
| !! | AACCGGTGTTTTCAGGGCAT+TGG | + | chr3.1:83149016-83149035 | None:intergenic | 50.0% |
| !! | AGGTGTGAAAAAGTGCCACG+TGG | - | chr3.1:83147585-83147604 | MS.gene32750:intron | 50.0% |
| !! | GTGAAAAAGTGCCACGTGGT+GGG | - | chr3.1:83147589-83147608 | MS.gene32750:intron | 50.0% |
| !! | TGTGAAAAAGTGCCACGTGG+TGG | - | chr3.1:83147588-83147607 | MS.gene32750:intron | 50.0% |
| ACATGGAAGGGTTTGAGGGC+GGG | - | chr3.1:83149289-83149308 | MS.gene32750:intron | 55.0% | |
| CACATGGAAGGGTTTGAGGG+CGG | - | chr3.1:83149288-83149307 | MS.gene32750:intron | 55.0% | |
| CATAACTCGTTCCCACCACG+TGG | + | chr3.1:83147603-83147622 | None:intergenic | 55.0% | |
| ! | CACGTGGTGGGAACGAGTTA+TGG | - | chr3.1:83147601-83147620 | MS.gene32750:intron | 55.0% |
| ! | GTGGTGGGAACGAGTTATGG+TGG | - | chr3.1:83147604-83147623 | MS.gene32750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 83147427 | 83149742 | 83147427 | ID=MS.gene32750 |
| chr3.1 | mRNA | 83147427 | 83149742 | 83147427 | ID=MS.gene32750.t1;Parent=MS.gene32750 |
| chr3.1 | exon | 83149299 | 83149742 | 83149299 | ID=MS.gene32750.t1.exon1;Parent=MS.gene32750.t1 |
| chr3.1 | CDS | 83149299 | 83149742 | 83149299 | ID=cds.MS.gene32750.t1;Parent=MS.gene32750.t1 |
| chr3.1 | exon | 83149045 | 83149140 | 83149045 | ID=MS.gene32750.t1.exon2;Parent=MS.gene32750.t1 |
| chr3.1 | CDS | 83149045 | 83149140 | 83149045 | ID=cds.MS.gene32750.t1;Parent=MS.gene32750.t1 |
| chr3.1 | exon | 83148897 | 83148964 | 83148897 | ID=MS.gene32750.t1.exon3;Parent=MS.gene32750.t1 |
| chr3.1 | CDS | 83148897 | 83148964 | 83148897 | ID=cds.MS.gene32750.t1;Parent=MS.gene32750.t1 |
| chr3.1 | exon | 83147427 | 83147544 | 83147427 | ID=MS.gene32750.t1.exon4;Parent=MS.gene32750.t1 |
| chr3.1 | CDS | 83147427 | 83147544 | 83147427 | ID=cds.MS.gene32750.t1;Parent=MS.gene32750.t1 |
| Gene Sequence |
| Protein sequence |
