AlfalfaGEDB | MS.gene34312

M. sativa cultivar XinJiangDaYe / MS.gene34312

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34312.t1	XP_013454491.1	99.3	151	1	0	1	151	83	233	1.20E-83	318.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34312.t1	A0A072UFR3	99.3	151	1	0	1	151	83	233	8.9e-84	318.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene34312	0.834438	3.00E-56	-1.69E-46
MS.gene049427	MS.gene34312	0.830705	2.53E-55	-1.69E-46
MS.gene049805	MS.gene34312	0.806037	9.99E-50	-1.69E-46
MS.gene050432	MS.gene34312	0.805597	1.24E-49	-1.69E-46
MS.gene050670	MS.gene34312	0.810764	9.80E-51	-1.69E-46
MS.gene050747	MS.gene34312	0.808999	2.35E-50	-1.69E-46
MS.gene05081	MS.gene34312	0.81115	8.08E-51	-1.69E-46
MS.gene050812	MS.gene34312	0.814887	1.23E-51	-1.69E-46
MS.gene050950	MS.gene34312	0.800896	1.16E-48	-1.69E-46
MS.gene05105	MS.gene34312	0.809805	1.58E-50	-1.69E-46

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34312.t1	MTR_4g005360	99.338	151	1	0	1	151	83	233	7.44e-111	314

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34312.t1	AT3G20270	57.241	145	60	2	1	145	90	232	8.53e-54	180
MS.gene34312.t1	AT3G20270	57.241	145	60	2	1	145	90	232	8.53e-54	180

Showing 1 to 2 of 2 entries

Previous1Next

Find 35 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCGTTTAAGTAAGCAAA+AGG	0.541095	4.3:-89154045	None:intergenic
ACATATCATAATAATCTACA+TGG	0.601342	4.3:-89154371	None:intergenic
ACTGATCTAGTGTAAGGATA+TGG	0.366614	4.3:-89154291	None:intergenic
ACTTTGACTGATCTAGTGTA+AGG	0.474599	4.3:-89154297	None:intergenic
AGATTCGAGATACAAGTTCA+TGG	0.497424	4.3:-89153983	None:intergenic
ATACAAGTGGATGAGATTGT+TGG	0.562800	4.3:+89153548	MS.gene34312:CDS
ATACTTCACGGAACCATGAT+TGG	0.450822	4.3:+89153632	MS.gene34312:CDS
ATCAGTCAAAGTTCAATGGA+GGG	0.611627	4.3:+89154308	MS.gene34312:CDS
ATCTCATCCACTTGTATATC+AGG	0.333453	4.3:-89153542	None:intergenic
ATGAACTTGTATCTCGAATC+TGG	0.411354	4.3:+89153985	MS.gene34312:CDS

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGACAAAATGTTGATG+AGG	-	chr4.3:89154227-89154246	None:intergenic	30.0%
AACAACAAAAGTAAAGAAGG+TGG	-	chr4.3:89153669-89153688	None:intergenic	30.0%
ACAACAAAAGTAAAGAAGGT+GGG	-	chr4.3:89153668-89153687	None:intergenic	30.0%
AGGATCAATTCAGTTTGATA+TGG	-	chr4.3:89153795-89153814	None:intergenic	30.0%
TTGGTTTATCTTGTTCTTGT+TGG	+	chr4.3:89153848-89153867	MS.gene34312:intron	30.0%
ACTCGACATAAGAGTTGTTA+CGG	-	chr4.3:89153724-89153743	None:intergenic	35.0%
ACTGATCTAGTGTAAGGATA+TGG	-	chr4.3:89154294-89154313	None:intergenic	35.0%
ACTTTGACTGATCTAGTGTA+AGG	-	chr4.3:89154300-89154319	None:intergenic	35.0%
AGATTCGAGATACAAGTTCA+TGG	-	chr4.3:89153986-89154005	None:intergenic	35.0%
ATACAAGTGGATGAGATTGT+TGG	+	chr4.3:89153548-89153567	MS.gene34312:CDS	35.0%

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	89153503	89154449	89153503	ID=MS.gene34312
chr4.3	mRNA	89153503	89154449	89153503	ID=MS.gene34312.t1;Parent=MS.gene34312
chr4.3	exon	89153503	89153653	89153503	ID=MS.gene34312.t1.exon1;Parent=MS.gene34312.t1
chr4.3	CDS	89153503	89153653	89153503	ID=cds.MS.gene34312.t1;Parent=MS.gene34312.t1
chr4.3	exon	89153946	89154082	89153946	ID=MS.gene34312.t1.exon2;Parent=MS.gene34312.t1
chr4.3	CDS	89153946	89154082	89153946	ID=cds.MS.gene34312.t1;Parent=MS.gene34312.t1
chr4.3	exon	89154282	89154449	89154282	ID=MS.gene34312.t1.exon3;Parent=MS.gene34312.t1
chr4.3	CDS	89154282	89154449	89154282	ID=cds.MS.gene34312.t1;Parent=MS.gene34312.t1

Gene Sequence

>MS.gene34312

ATGGCCTTACATATAAGTCAACAAATATTTGCTTCTGATCCTGATATACAAGTGGATGAGATTGTTGGGCATAGTTATCTGTTTTTGAAAGAGCAGCTTCAACTTTCCATTATGCCTCCTCATGGTGGAATACTTCACGGAACCATGATTGGTATGGCATGCCCCACCTTCTTTACTTTTGTTGTTACACTTATATCTTTATGTCCTTTTGGTTTATCCCGTAACAACTCTTATGTCGAGTTTTGTAGGAGAGAGGTTAATATGGTCGCCCATAATCTAGCAAAGGCGGCCATATCAAACTGAATTGATCCTATGATTCTAATTGAAATGAATTAGTTCTCTAAGTTGGTTTATCTTGTTCTTGTTGGATTATATTATTATTGTTAATATGTATATCAATAGTTATTAGAACTTTGATCATTCATTTTATTTTTATTTAGCAGATCAGTTTATTGCCAATGGCAAGTCAAGAGACGTAGCCCATGAACTTGTATCTCGAATCTGGCTTGCTGTTCTTGACAATTTGGAAGAAAATCAGCATACCTTTTGCTTACTTAAACGCCTTGCACATGAAGGAGATGTAAGTTTAGTTACTAGTATTTTGCTTGTTTCTTCTAATGACACTTGCAATTTCATACCTATATATTTTTATCATTATTTCTTAGATTTGTGCAAAAGGATGAGATCTTTACTGCTTGCAATTATATAAGTCTTTCTTCTTCCTCATCAACATTTTGTCTCTTTGATCATGTAATTATTTTTGCAATAACTTTCAGCAGGTTTTTCTTCCATATCCTTACACTAGATCAGTCAAAGTTCAATGGAGGGTGTTTGAGAAGCTTTTTACTGATTTCCGTGATTGCTTCAACCATGTAGATTATTATGATATGTTGGCATGTGCTAAAAGTAGGTTTCAGCCAATACCATCTGCTTGGTTAGGTTATTAG

Protein sequence

>MS.gene34312.t1

MALHISQQIFASDPDIQVDEIVGHSYLFLKEQLQLSIMPPHGGILHGTMIDQFIANGKSRDVAHELVSRIWLAVLDNLEENQHTFCLLKRLAHEGDVFLPYPYTRSVKVQWRVFEKLFTDFRDCFNHVDYYDMLACAKSRFQPIPSAWLGY