Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35264.t1 | XP_003612810.1 | 87.3 | 292 | 32 | 1 | 1 | 292 | 1 | 287 | 3.10E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35264.t1 | G7KCC3 | 87.3 | 292 | 32 | 1 | 1 | 292 | 1 | 287 | 2.2e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene35264 | 0.823105 | 1.66E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene35264 | 0.816975 | 4.19E-52 | -1.69E-46 |
| MS.gene049272 | MS.gene35264 | 0.807488 | 4.93E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene35264 | 0.801811 | 7.55E-49 | -1.69E-46 |
| MS.gene049647 | MS.gene35264 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene35264 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene35264 | 0.800821 | 1.20E-48 | -1.69E-46 |
| MS.gene050355 | MS.gene35264 | 0.825828 | 3.79E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene35264 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene050561 | MS.gene35264 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene35264 | 0.802524 | 5.38E-49 | -1.69E-46 |
| MS.gene051935 | MS.gene35264 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene052052 | MS.gene35264 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene35264 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene35264 | 0.817555 | 3.10E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene35264 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene35264 | 0.80984 | 1.55E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene35264 | 0.839259 | 1.76E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene35264 | 0.8153 | 9.92E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene35264 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene35264 | 0.820677 | 6.04E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene35264 | -0.800918 | 1.15E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene35264 | 0.811067 | 8.42E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene35264 | 0.816141 | 6.45E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene35264 | 0.806583 | 7.67E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene35264 | 0.820431 | 6.88E-53 | -1.69E-46 |
| MS.gene055222 | MS.gene35264 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene35264 | 0.818334 | 2.07E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene35264 | 0.801326 | 9.49E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene35264 | 0.804368 | 2.23E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene35264 | 0.807368 | 5.23E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene35264 | 0.840071 | 1.08E-57 | -1.69E-46 |
| MS.gene05659 | MS.gene35264 | 0.829562 | 4.80E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene35264 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene35264 | 0.813019 | 3.16E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene35264 | 0.80493 | 1.70E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene35264 | 0.825622 | 4.24E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene35264 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene058548 | MS.gene35264 | 0.808894 | 2.47E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene35264 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene35264 | 0.815399 | 9.43E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene35264 | 0.811062 | 8.45E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene35264 | 0.803499 | 3.39E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene35264 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene35264 | 0.812935 | 3.30E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene35264 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene35264 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene35264 | 0.801418 | 9.09E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene35264 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene35264 | -0.82081 | 5.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35264.t1 | MTR_5g029310 | 87.329 | 292 | 32 | 1 | 1 | 292 | 1 | 287 | 0.0 | 499 |
| MS.gene35264.t1 | MTR_5g029310 | 87.031 | 293 | 32 | 2 | 1 | 292 | 1 | 288 | 5.76e-179 | 495 |
| MS.gene35264.t1 | MTR_5g029290 | 63.750 | 80 | 20 | 1 | 158 | 237 | 55 | 125 | 4.47e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAACAACGATTTC+TGG | 0.136302 | 5.4:-19544255 | MS.gene35264:CDS |
| GGAGAAAAGGTTGAAGATTT+TGG | 0.145900 | 5.4:-19544601 | MS.gene35264:CDS |
| TTCTGATTCTTGTTTGCTTT+TGG | 0.241287 | 5.4:+19544919 | None:intergenic |
| TATTCAGCTGGCTTCCATAC+TGG | 0.277440 | 5.4:-19542516 | MS.gene35264:CDS |
| TTGGAGCAAATTAATCAATA+TGG | 0.280579 | 5.4:-19544582 | MS.gene35264:CDS |
| GAAACTCAAAATTTGCATAA+TGG | 0.301387 | 5.4:-19544687 | MS.gene35264:CDS |
| GGATTCGTGTGCATCGGTTC+CGG | 0.324114 | 5.4:-19544415 | MS.gene35264:CDS |
| AAACTCAAAATTTGCATAAT+GGG | 0.324237 | 5.4:-19544686 | MS.gene35264:CDS |
| GCAGCAACTGGGTCGAATTA+TGG | 0.331989 | 5.4:-19544540 | MS.gene35264:CDS |
| GGTTGTTCTGTTGGTGGGTT+GGG | 0.333086 | 5.4:-19544393 | MS.gene35264:CDS |
| TTGAAATTTCAACTACTTCA+AGG | 0.362528 | 5.4:-19544877 | MS.gene35264:intron |
| TAATGATTATACTGCGGAAA+AGG | 0.365046 | 5.4:-19544355 | MS.gene35264:CDS |
| GCTGAGTCACCAATTTGTTC+AGG | 0.368999 | 5.4:+19542570 | None:intergenic |
| CAACACGAACACACAACATT+CGG | 0.378969 | 5.4:+19544462 | None:intergenic |
| CTTTGTTTAGATTCAACAAT+TGG | 0.380847 | 5.4:-19544714 | MS.gene35264:CDS |
| TCTGTTGGTGGGTTGGGTGT+TGG | 0.383207 | 5.4:-19544387 | MS.gene35264:CDS |
| GATTCGTGTGCATCGGTTCC+GGG | 0.385443 | 5.4:-19544414 | MS.gene35264:CDS |
| AATTCTGAACCTGAACAAAT+TGG | 0.386228 | 5.4:-19542579 | MS.gene35264:CDS |
| ATTATAGTTATGATGATAAC+AGG | 0.395966 | 5.4:-19542039 | MS.gene35264:intron |
| CGACGCAATTTCTTCTTACA+AGG | 0.404149 | 5.4:-19545030 | MS.gene35264:intron |
| TATCTTGCTGAACAATCAAT+TGG | 0.405329 | 5.4:-19542016 | MS.gene35264:CDS |
| AATCAACAATATGCAGCAAC+TGG | 0.408282 | 5.4:-19544552 | MS.gene35264:CDS |
| ATTATGAACTTGAGGAGAAA+AGG | 0.427472 | 5.4:-19544614 | MS.gene35264:CDS |
| CTGAATGCTTGGTATTCAGC+TGG | 0.428215 | 5.4:-19542528 | MS.gene35264:CDS |
| GGGTTGTTCTGTTGGTGGGT+TGG | 0.433704 | 5.4:-19544394 | MS.gene35264:CDS |
| TGGGTAAAGATGGAGATCTC+TGG | 0.439726 | 5.4:-19545082 | MS.gene35264:CDS |
| TTCCGGGTTGTTCTGTTGGT+GGG | 0.448781 | 5.4:-19544398 | MS.gene35264:CDS |
| TTACTGCTGTTCTGAATGCT+TGG | 0.464273 | 5.4:-19542539 | MS.gene35264:CDS |
| ATTCAGCTGGCTTCCATACT+GGG | 0.470506 | 5.4:-19542515 | MS.gene35264:CDS |
| GTTCCGGGTTGTTCTGTTGG+TGG | 0.478860 | 5.4:-19544399 | MS.gene35264:CDS |
| AAGATTCGTGAGATTGCAAT+GGG | 0.479658 | 5.4:-19544300 | MS.gene35264:CDS |
| TCCAACTTTGAATCAATAGC+AGG | 0.485135 | 5.4:+19544750 | None:intergenic |
| GGGTCAGAAACTTGTTGTGC+AGG | 0.488429 | 5.4:+19544483 | None:intergenic |
| TCGGTTCCGGGTTGTTCTGT+TGG | 0.495581 | 5.4:-19544402 | MS.gene35264:CDS |
| TCCTGCTATTGATTCAAAGT+TGG | 0.496438 | 5.4:-19544751 | MS.gene35264:CDS |
| AAATTAATCAATATGGTGGT+TGG | 0.517556 | 5.4:-19544575 | MS.gene35264:CDS |
| AACACGAACACACAACATTC+GGG | 0.519838 | 5.4:+19544463 | None:intergenic |
| GCTCAAACAATGGGTAAAGA+TGG | 0.521554 | 5.4:-19545092 | None:intergenic |
| AATGATTATACTGCGGAAAA+GGG | 0.526429 | 5.4:-19544354 | MS.gene35264:CDS |
| GGAGATGTTAACGTAAATGA+AGG | 0.534440 | 5.4:-19544234 | MS.gene35264:intron |
| TCCGCAGTATAATCATTACA+AGG | 0.549192 | 5.4:+19544360 | None:intergenic |
| GGGTAAAGATGGAGATCTCT+GGG | 0.550430 | 5.4:-19545081 | MS.gene35264:CDS |
| GAGCAAATTAATCAATATGG+TGG | 0.566754 | 5.4:-19544579 | MS.gene35264:CDS |
| TGCTGAGTATTATGAACTTG+AGG | 0.567020 | 5.4:-19544622 | MS.gene35264:CDS |
| TGTTGTGGATTCGTGTGCAT+CGG | 0.585373 | 5.4:-19544421 | MS.gene35264:CDS |
| ATCAACAATATGCAGCAACT+GGG | 0.593424 | 5.4:-19544551 | MS.gene35264:CDS |
| TAAGATTCGTGAGATTGCAA+TGG | 0.610051 | 5.4:-19544301 | MS.gene35264:CDS |
| GATTCGTGAGATTGCAATGG+GGG | 0.611480 | 5.4:-19544298 | MS.gene35264:CDS |
| AACCCACCAACAGAACAACC+CGG | 0.624390 | 5.4:+19544396 | None:intergenic |
| TATGGTGCGACATACTCTGA+TGG | 0.635819 | 5.4:-19544522 | MS.gene35264:CDS |
| AATGGGTATTCATATGAACA+TGG | 0.645390 | 5.4:-19544669 | MS.gene35264:CDS |
| ACAAATTGGTGACTCAGCAA+CGG | 0.651361 | 5.4:-19542565 | MS.gene35264:CDS |
| CGAATCTTACCATCTCCACA+CGG | 0.671150 | 5.4:+19544315 | None:intergenic |
| ACAACACATTGACTAAAACA+CGG | 0.705935 | 5.4:+19544438 | None:intergenic |
| ACCTTGTAATGATTATACTG+CGG | 0.710870 | 5.4:-19544361 | MS.gene35264:CDS |
| AGATTCGTGAGATTGCAATG+GGG | 0.762876 | 5.4:-19544299 | MS.gene35264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGAAATTAAATTCAA+CGG | + | chr5.4:19542234-19542253 | None:intergenic | 10.0% |
| !! | TAACTATAATGATTATACAA+AGG | + | chr5.4:19545031-19545050 | None:intergenic | 15.0% |
| !!! | AGTTGTTTTTTTTAAATGAA+AGG | - | chr5.4:19543115-19543134 | MS.gene35264:intron | 15.0% |
| !!! | AGTTTATTTTGATTTACAAT+AGG | - | chr5.4:19542283-19542302 | MS.gene35264:intron | 15.0% |
| !!! | GATTAATCAATTGATTTTTT+GGG | - | chr5.4:19544062-19544081 | MS.gene35264:intron | 15.0% |
| !!! | GTTTATTTTGATTTACAATA+GGG | - | chr5.4:19542284-19542303 | MS.gene35264:intron | 15.0% |
| !!! | TGATTAATCAATTGATTTTT+TGG | - | chr5.4:19544061-19544080 | MS.gene35264:intron | 15.0% |
| !! | AAACTCAAAATTTGCATAAT+GGG | - | chr5.4:19542394-19542413 | MS.gene35264:intron | 20.0% |
| !! | ATAATGATTATACAAAGGAT+AGG | + | chr5.4:19545026-19545045 | None:intergenic | 20.0% |
| !! | ATTATAGTTATGATGATAAC+AGG | - | chr5.4:19545041-19545060 | MS.gene35264:CDS | 20.0% |
| !! | GCATATTAAACATTTAAGAA+CGG | + | chr5.4:19544297-19544316 | None:intergenic | 20.0% |
| !! | TAACAAAATAAAAATACGTC+TGG | - | chr5.4:19544707-19544726 | MS.gene35264:CDS | 20.0% |
| !! | TACTTAATCAGTTATGATTA+GGG | + | chr5.4:19543606-19543625 | None:intergenic | 20.0% |
| !! | TATATTCAATAACAAAAGCA+TGG | + | chr5.4:19542964-19542983 | None:intergenic | 20.0% |
| !! | TATTACAGAAGATTAATGTT+AGG | - | chr5.4:19543435-19543454 | MS.gene35264:intron | 20.0% |
| !! | TCCATAATATAAGGAATTTA+GGG | + | chr5.4:19543656-19543675 | None:intergenic | 20.0% |
| !! | TTACTTAATCAGTTATGATT+AGG | + | chr5.4:19543607-19543626 | None:intergenic | 20.0% |
| !! | TTATGTAATTTGATGAATGA+AGG | - | chr5.4:19544186-19544205 | MS.gene35264:intron | 20.0% |
| !! | TTCCATAATATAAGGAATTT+AGG | + | chr5.4:19543657-19543676 | None:intergenic | 20.0% |
| !!! | TGTCTTATTGTTGTTATTTT+GGG | + | chr5.4:19543463-19543482 | None:intergenic | 20.0% |
| ! | AAATGAAAGGACTGAATTTA+TGG | - | chr5.4:19543128-19543147 | MS.gene35264:intron | 25.0% |
| ! | AAATTAATCAATATGGTGGT+TGG | - | chr5.4:19542505-19542524 | MS.gene35264:intron | 25.0% |
| ! | ACCAAATATGAAGATATTCT+TGG | - | chr5.4:19544417-19544436 | MS.gene35264:CDS | 25.0% |
| ! | ACCCTAAATTCCTTATATTA+TGG | - | chr5.4:19543652-19543671 | MS.gene35264:intron | 25.0% |
| ! | ATCAAAATATAGGAAATGAG+AGG | + | chr5.4:19544008-19544027 | None:intergenic | 25.0% |
| ! | ATCTTTCTGTTCTCATAATT+CGG | + | chr5.4:19543390-19543409 | None:intergenic | 25.0% |
| ! | ATTCTCTTGTATAAACAATG+AGG | + | chr5.4:19544631-19544650 | None:intergenic | 25.0% |
| ! | CCAAATATGAAGATATTCTT+GGG | - | chr5.4:19544418-19544437 | MS.gene35264:CDS | 25.0% |
| ! | GAAAATATTATGACATGGAA+GGG | + | chr5.4:19543986-19544005 | None:intergenic | 25.0% |
| ! | GAAACTCAAAATTTGCATAA+TGG | - | chr5.4:19542393-19542412 | MS.gene35264:intron | 25.0% |
| ! | GATTGATTATTAATTGACTG+TGG | - | chr5.4:19543512-19543531 | MS.gene35264:intron | 25.0% |
| ! | TCATAAATCAATTCCTCATT+AGG | - | chr5.4:19543784-19543803 | MS.gene35264:intron | 25.0% |
| ! | TTATTAGATCTTTCCTTCTT+AGG | - | chr5.4:19544321-19544340 | MS.gene35264:CDS | 25.0% |
| ! | TTGAAATTTCAACTACTTCA+AGG | - | chr5.4:19542203-19542222 | MS.gene35264:intron | 25.0% |
| ! | TTGGAGCAAATTAATCAATA+TGG | - | chr5.4:19542498-19542517 | MS.gene35264:intron | 25.0% |
| ! | TTTCTGCTGAATAAGAAAAA+GGG | + | chr5.4:19542128-19542147 | None:intergenic | 25.0% |
| !! | CTTTGTTTAGATTCAACAAT+TGG | - | chr5.4:19542366-19542385 | MS.gene35264:intron | 25.0% |
| !! | GAATTCTCTTTCTTTTTATC+TGG | + | chr5.4:19544486-19544505 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGAATAAGAAAA+AGG | + | chr5.4:19542129-19542148 | None:intergenic | 25.0% |
| !!! | CTGTCTTATTGTTGTTATTT+TGG | + | chr5.4:19543464-19543483 | None:intergenic | 25.0% |
| !!! | CTTTTAAGTAGGTTTAGTTT+TGG | - | chr5.4:19544740-19544759 | MS.gene35264:CDS | 25.0% |
| !!! | GAAATTAGGTTGAATTGAAA+GGG | + | chr5.4:19542103-19542122 | None:intergenic | 25.0% |
| !!! | TGAAATTAGGTTGAATTGAA+AGG | + | chr5.4:19542104-19542123 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGACTAAAACAG+AGG | + | chr5.4:19544783-19544802 | None:intergenic | 25.0% |
| AAAACAGAGGTTAAAGAGTT+CGG | + | chr5.4:19544770-19544789 | None:intergenic | 30.0% | |
| AATGATTATACTGCGGAAAA+GGG | - | chr5.4:19542726-19542745 | MS.gene35264:intron | 30.0% | |
| AATGGGTATTCATATGAACA+TGG | - | chr5.4:19542411-19542430 | MS.gene35264:intron | 30.0% | |
| AATTCTGAACCTGAACAAAT+TGG | - | chr5.4:19544501-19544520 | MS.gene35264:CDS | 30.0% | |
| ACCTTGTAATGATTATACTG+CGG | - | chr5.4:19542719-19542738 | MS.gene35264:intron | 30.0% | |
| ACTATTAGAACAACGATTTC+TGG | - | chr5.4:19542825-19542844 | MS.gene35264:intron | 30.0% | |
| AGAATAAACTTTCCACACTT+TGG | - | chr5.4:19543747-19543766 | MS.gene35264:intron | 30.0% | |
| ATATGAAACACTCATTACTG+TGG | - | chr5.4:19544444-19544463 | MS.gene35264:CDS | 30.0% | |
| ATTATGAACTTGAGGAGAAA+AGG | - | chr5.4:19542466-19542485 | MS.gene35264:intron | 30.0% | |
| ATTGAAAGGGAATTTGATTG+AGG | + | chr5.4:19542090-19542109 | None:intergenic | 30.0% | |
| CCCAAGAATATCTTCATATT+TGG | + | chr5.4:19544421-19544440 | None:intergenic | 30.0% | |
| GAATAAACTTTCCACACTTT+GGG | - | chr5.4:19543748-19543767 | MS.gene35264:intron | 30.0% | |
| GAGAGGAAAATATTATGACA+TGG | + | chr5.4:19543991-19544010 | None:intergenic | 30.0% | |
| GAGCAAATTAATCAATATGG+TGG | - | chr5.4:19542501-19542520 | MS.gene35264:intron | 30.0% | |
| GCAACTGTTTCCATAATATA+AGG | + | chr5.4:19543665-19543684 | None:intergenic | 30.0% | |
| GGAAAATATTATGACATGGA+AGG | + | chr5.4:19543987-19544006 | None:intergenic | 30.0% | |
| TAAGAAAAAGGGGTGAAATT+AGG | + | chr5.4:19542117-19542136 | None:intergenic | 30.0% | |
| TAATGATTATACTGCGGAAA+AGG | - | chr5.4:19542725-19542744 | MS.gene35264:intron | 30.0% | |
| TATCTTGCTGAACAATCAAT+TGG | - | chr5.4:19545064-19545083 | MS.gene35264:CDS | 30.0% | |
| TCTTTCTGTTCTCATAATTC+GGG | + | chr5.4:19543389-19543408 | None:intergenic | 30.0% | |
| TGTGGAAAGTTTATTCTAGA+AGG | + | chr5.4:19543744-19543763 | None:intergenic | 30.0% | |
| TGTTAACGTAAATGAAGGTA+AGG | - | chr5.4:19542851-19542870 | MS.gene35264:intron | 30.0% | |
| TTCTGCTGAATAAGAAAAAG+GGG | + | chr5.4:19542127-19542146 | None:intergenic | 30.0% | |
| ! | AATATAAGGAATTTAGGGTG+AGG | + | chr5.4:19543651-19543670 | None:intergenic | 30.0% |
| ! | ACAACACATTGACTAAAACA+CGG | + | chr5.4:19542645-19542664 | None:intergenic | 30.0% |
| ! | GAATTTAGAGCAATAGAGAA+AGG | - | chr5.4:19543487-19543506 | MS.gene35264:intron | 30.0% |
| ! | GTGGAAAGTTTATTCTAGAA+GGG | + | chr5.4:19543743-19543762 | None:intergenic | 30.0% |
| ! | TGGAAAGTTTATTCTAGAAG+GGG | + | chr5.4:19543742-19543761 | None:intergenic | 30.0% |
| ! | TTCTTTGGGTTTGAATGATA+AGG | - | chr5.4:19543279-19543298 | MS.gene35264:intron | 30.0% |
| !! | TTCTGATTCTTGTTTGCTTT+TGG | + | chr5.4:19542164-19542183 | None:intergenic | 30.0% |
| !!! | AAAGCTACTTTTTGTTGTTC+TGG | - | chr5.4:19543207-19543226 | MS.gene35264:intron | 30.0% |
| !!! | AAGGATTTTTTATGTGATCC+TGG | - | chr5.4:19543298-19543317 | MS.gene35264:intron | 30.0% |
| !!! | ATTACTTAGTCTGGCTTTTA+TGG | + | chr5.4:19543033-19543052 | None:intergenic | 30.0% |
| !!! | GATAAAATTTTGATTCCGTG+TGG | - | chr5.4:19542750-19542769 | MS.gene35264:intron | 30.0% |
| !!! | TAAGTAGGTTTAGTTTTGGT+TGG | - | chr5.4:19544744-19544763 | MS.gene35264:CDS | 30.0% |
| !!! | TTTTAGTTCTGATTTAGCCA+TGG | - | chr5.4:19544215-19544234 | MS.gene35264:intron | 30.0% |
| AAAATACGTCTGGATTGTTG+TGG | - | chr5.4:19544717-19544736 | MS.gene35264:CDS | 35.0% | |
| AAATCCACGTTAAACACTCA+TGG | - | chr5.4:19543235-19543254 | MS.gene35264:intron | 35.0% | |
| AAGATTCGTGAGATTGCAAT+GGG | - | chr5.4:19542780-19542799 | MS.gene35264:intron | 35.0% | |
| AATCAACAATATGCAGCAAC+TGG | - | chr5.4:19542528-19542547 | MS.gene35264:CDS | 35.0% | |
| AGTAGTGCATGCATATTGTT+AGG | - | chr5.4:19543361-19543380 | MS.gene35264:intron | 35.0% | |
| ATAGGATGCTTCAACAAACA+TGG | + | chr5.4:19544255-19544274 | None:intergenic | 35.0% | |
| ATCAACAATATGCAGCAACT+GGG | - | chr5.4:19542529-19542548 | MS.gene35264:CDS | 35.0% | |
| CAAAAACTTACTTCCCAGTA+TGG | + | chr5.4:19544581-19544600 | None:intergenic | 35.0% | |
| CAAACATCAGTACAACCAAT+AGG | + | chr5.4:19544273-19544292 | None:intergenic | 35.0% | |
| CAAACCCAAAGAATATCAGA+AGG | + | chr5.4:19543272-19543291 | None:intergenic | 35.0% | |
| CAAAGGTCACAAAATGTGTT+AGG | + | chr5.4:19544108-19544127 | None:intergenic | 35.0% | |
| CAAATGACCAAAACCTAAGA+AGG | + | chr5.4:19544337-19544356 | None:intergenic | 35.0% | |
| CAGTATATAACACAAACACC+AGG | + | chr5.4:19544155-19544174 | None:intergenic | 35.0% | |
| CAGTGGTGTGATCAAAATAT+AGG | + | chr5.4:19544018-19544037 | None:intergenic | 35.0% | |
| CATGTGCATGAATATCTTAG+TGG | - | chr5.4:19542897-19542916 | MS.gene35264:intron | 35.0% | |
| GAATTTGATTGAGGAGGAAA+AGG | + | chr5.4:19542081-19542100 | None:intergenic | 35.0% | |
| GGAGATGTTAACGTAAATGA+AGG | - | chr5.4:19542846-19542865 | MS.gene35264:intron | 35.0% | |
| GGGTACTTTATTACTTAGTC+TGG | + | chr5.4:19543042-19543061 | None:intergenic | 35.0% | |
| TAAGATTCGTGAGATTGCAA+TGG | - | chr5.4:19542779-19542798 | MS.gene35264:intron | 35.0% | |
| TCCAACTTTGAATCAATAGC+AGG | + | chr5.4:19542333-19542352 | None:intergenic | 35.0% | |
| TCCGCAGTATAATCATTACA+AGG | + | chr5.4:19542723-19542742 | None:intergenic | 35.0% | |
| TGACAGTGTAATATATCAGC+TGG | + | chr5.4:19544845-19544864 | None:intergenic | 35.0% | |
| TGCTGAGTATTATGAACTTG+AGG | - | chr5.4:19542458-19542477 | MS.gene35264:intron | 35.0% | |
| TGTGCCTTCTGATATTCTTT+GGG | - | chr5.4:19543265-19543284 | MS.gene35264:intron | 35.0% | |
| TTGTGCCTTCTGATATTCTT+TGG | - | chr5.4:19543264-19543283 | MS.gene35264:intron | 35.0% | |
| ! | GATCTTTCCTTCTTAGGTTT+TGG | - | chr5.4:19544327-19544346 | MS.gene35264:CDS | 35.0% |
| ! | GGAGAAAAGGTTGAAGATTT+TGG | - | chr5.4:19542479-19542498 | MS.gene35264:intron | 35.0% |
| ! | TGTTTGTTGAAGCATCCTAT+TGG | - | chr5.4:19544255-19544274 | MS.gene35264:CDS | 35.0% |
| !! | AGTTAGTAACCGCTTTGTTT+GGG | + | chr5.4:19543896-19543915 | None:intergenic | 35.0% |
| !! | GATTGTTGTGGCTTTTAAGT+AGG | - | chr5.4:19544729-19544748 | MS.gene35264:CDS | 35.0% |
| !! | TCCTGCTATTGATTCAAAGT+TGG | - | chr5.4:19542329-19542348 | MS.gene35264:intron | 35.0% |
| !!! | GTGTTTTAGTCAATGTGTTG+TGG | - | chr5.4:19542644-19542663 | MS.gene35264:intron | 35.0% |
| !!! | TAAGCGGTTTTGTTGTATCA+AGG | - | chr5.4:19543068-19543087 | MS.gene35264:intron | 35.0% |
| AAAGCCACTGAAGCACAAAA+AGG | + | chr5.4:19544397-19544416 | None:intergenic | 40.0% | |
| AACAAAACCGCTTAGAGCAT+GGG | + | chr5.4:19543062-19543081 | None:intergenic | 40.0% | |
| AACACGAACACACAACATTC+GGG | + | chr5.4:19542620-19542639 | None:intergenic | 40.0% | |
| ACACCAGGACACAATTTCAA+TGG | + | chr5.4:19544140-19544159 | None:intergenic | 40.0% | |
| AGAGATCGTGACTAAGCAAA+TGG | + | chr5.4:19543811-19543830 | None:intergenic | 40.0% | |
| AGAGTTTCATCTCTTCTCTG+AGG | + | chr5.4:19543868-19543887 | None:intergenic | 40.0% | |
| AGATTCGTGAGATTGCAATG+GGG | - | chr5.4:19542781-19542800 | MS.gene35264:intron | 40.0% | |
| AGGACCTCAAATGAGAATGT+AGG | + | chr5.4:19544088-19544107 | None:intergenic | 40.0% | |
| ATCAGTTGCACAAGTCCATT+AGG | + | chr5.4:19544045-19544064 | None:intergenic | 40.0% | |
| CAACACGAACACACAACATT+CGG | + | chr5.4:19542621-19542640 | None:intergenic | 40.0% | |
| CAATAATCCTCACACACAAC+TGG | - | chr5.4:19543684-19543703 | MS.gene35264:intron | 40.0% | |
| CACATTTATGAGCATGAGAG+AGG | + | chr5.4:19542990-19543009 | None:intergenic | 40.0% | |
| CATCCATTGAAATTGTGTCC+TGG | - | chr5.4:19544134-19544153 | MS.gene35264:intron | 40.0% | |
| CGACGCAATTTCTTCTTACA+AGG | - | chr5.4:19542050-19542069 | MS.gene35264:intron | 40.0% | |
| CTAAGCAAATGGTCCTAATG+AGG | + | chr5.4:19543800-19543819 | None:intergenic | 40.0% | |
| CTAGCATGTTGTTATGTAGC+AGG | - | chr5.4:19544655-19544674 | MS.gene35264:CDS | 40.0% | |
| CTCTCTCATGCTCATAAATG+TGG | - | chr5.4:19542988-19543007 | MS.gene35264:intron | 40.0% | |
| GAAAGGGAATTTGATTGAGG+AGG | + | chr5.4:19542087-19542106 | None:intergenic | 40.0% | |
| TATGACATGGAAGGGATTGA+GGG | + | chr5.4:19543978-19543997 | None:intergenic | 40.0% | |
| TGGAATCATGACTAGTACCA+TGG | + | chr5.4:19544235-19544254 | None:intergenic | 40.0% | |
| TTATGACATGGAAGGGATTG+AGG | + | chr5.4:19543979-19543998 | None:intergenic | 40.0% | |
| TTCAATGGATGCAAGCACAA+AGG | + | chr5.4:19544125-19544144 | None:intergenic | 40.0% | |
| TTGCTTAGTGAAACTGTAGC+AGG | - | chr5.4:19544354-19544373 | MS.gene35264:CDS | 40.0% | |
| ! | AATTTAGGGTGAGGTAAAGC+GGG | + | chr5.4:19543642-19543661 | None:intergenic | 40.0% |
| ! | ACAAATTGGTGACTCAGCAA+CGG | - | chr5.4:19544515-19544534 | MS.gene35264:CDS | 40.0% |
| ! | CAGTTAGTAACCGCTTTGTT+TGG | + | chr5.4:19543897-19543916 | None:intergenic | 40.0% |
| ! | GAATTTAGGGTGAGGTAAAG+CGG | + | chr5.4:19543643-19543662 | None:intergenic | 40.0% |
| ! | TAAAGTACCCATGCTCTAAG+CGG | - | chr5.4:19543052-19543071 | MS.gene35264:intron | 40.0% |
| ! | TATTCTAGAAGGGGCAAAAG+CGG | + | chr5.4:19543733-19543752 | None:intergenic | 40.0% |
| ! | TTACTGCTGTTCTGAATGCT+TGG | - | chr5.4:19544541-19544560 | MS.gene35264:CDS | 40.0% |
| !! | TTCTTGTTTGCTTTTGGCGT+TGG | + | chr5.4:19542158-19542177 | None:intergenic | 40.0% |
| !!! | ATTTTGATTCCGTGTGGAGA+TGG | - | chr5.4:19542756-19542775 | MS.gene35264:intron | 40.0% |
| AGCATTTGCGCTGAGATTAC+AGG | + | chr5.4:19543845-19543864 | None:intergenic | 45.0% | |
| AGGGTGAGCAATTCGTCATA+AGG | + | chr5.4:19543959-19543978 | None:intergenic | 45.0% | |
| CAACAAAACCGCTTAGAGCA+TGG | + | chr5.4:19543063-19543082 | None:intergenic | 45.0% | |
| CAAGCTTTCGACTCAGTTAG+AGG | + | chr5.4:19543168-19543187 | None:intergenic | 45.0% | |
| CAAGTCCATTAGGTAGACAG+TGG | + | chr5.4:19544035-19544054 | None:intergenic | 45.0% | |
| CATTTGCGCTGAGATTACAG+GGG | + | chr5.4:19543843-19543862 | None:intergenic | 45.0% | |
| CGAATCTTACCATCTCCACA+CGG | + | chr5.4:19542768-19542787 | None:intergenic | 45.0% | |
| CTCTCTCTACCCAAACAAAG+CGG | - | chr5.4:19543884-19543903 | MS.gene35264:intron | 45.0% | |
| CTGAATGCTTGGTATTCAGC+TGG | - | chr5.4:19544552-19544571 | MS.gene35264:CDS | 45.0% | |
| GAAGCCATGAGTGTTTAACG+TGG | + | chr5.4:19543242-19543261 | None:intergenic | 45.0% | |
| GATTCGTGAGATTGCAATGG+GGG | - | chr5.4:19542782-19542801 | MS.gene35264:intron | 45.0% | |
| GCATTTGCGCTGAGATTACA+GGG | + | chr5.4:19543844-19543863 | None:intergenic | 45.0% | |
| GGGTAAAGATGGAGATCTCT+GGG | - | chr5.4:19541999-19542018 | MS.gene35264:CDS | 45.0% | |
| GGGTGAGCAATTCGTCATAA+GGG | + | chr5.4:19543958-19543977 | None:intergenic | 45.0% | |
| GGTGAGCAATTCGTCATAAG+GGG | + | chr5.4:19543957-19543976 | None:intergenic | 45.0% | |
| GTGAGCAATTCGTCATAAGG+GGG | + | chr5.4:19543956-19543975 | None:intergenic | 45.0% | |
| TAGTGAAACTGTAGCAGGCA+AGG | - | chr5.4:19544359-19544378 | MS.gene35264:CDS | 45.0% | |
| TATGGTGCGACATACTCTGA+TGG | - | chr5.4:19542558-19542577 | MS.gene35264:CDS | 45.0% | |
| TCACACCACTGTCTACCTAA+TGG | - | chr5.4:19544027-19544046 | MS.gene35264:intron | 45.0% | |
| TCAGTGCACAAAAGAGATCC+AGG | + | chr5.4:19543319-19543338 | None:intergenic | 45.0% | |
| TGGGCCTACATTCTCATTTG+AGG | - | chr5.4:19544081-19544100 | MS.gene35264:intron | 45.0% | |
| TGGGTAAAGATGGAGATCTC+TGG | - | chr5.4:19541998-19542017 | MS.gene35264:CDS | 45.0% | |
| TGTTGTGGATTCGTGTGCAT+CGG | - | chr5.4:19542659-19542678 | MS.gene35264:intron | 45.0% | |
| ! | ATTCAGCTGGCTTCCATACT+GGG | - | chr5.4:19544565-19544584 | MS.gene35264:CDS | 45.0% |
| ! | CACACCTTTTTGTGCTTCAG+TGG | - | chr5.4:19544390-19544409 | MS.gene35264:CDS | 45.0% |
| ! | CTGAAGCACAAAAAGGTGTG+TGG | + | chr5.4:19544390-19544409 | None:intergenic | 45.0% |
| ! | GCTGAGTCACCAATTTGTTC+AGG | + | chr5.4:19544513-19544532 | None:intergenic | 45.0% |
| ! | TATTCAGCTGGCTTCCATAC+TGG | - | chr5.4:19544564-19544583 | MS.gene35264:CDS | 45.0% |
| ! | TTGTGCACTGATATGTCTGC+TGG | - | chr5.4:19543328-19543347 | MS.gene35264:intron | 45.0% |
| AACCCACCAACAGAACAACC+CGG | + | chr5.4:19542687-19542706 | None:intergenic | 50.0% | |
| AAGGGGGAGAACGATAGAGT+GGG | + | chr5.4:19543940-19543959 | None:intergenic | 50.0% | |
| ACTCAGCTAGACCCAAAGTG+TGG | + | chr5.4:19543762-19543781 | None:intergenic | 50.0% | |
| AGGGAGCAGTAGCTTCCTAA+AGG | + | chr5.4:19543587-19543606 | None:intergenic | 50.0% | |
| GCAGCAACTGGGTCGAATTA+TGG | - | chr5.4:19542540-19542559 | MS.gene35264:CDS | 50.0% | |
| GGAGAACGATAGAGTGGGAA+GGG | + | chr5.4:19543935-19543954 | None:intergenic | 50.0% | |
| TAAGGGGGAGAACGATAGAG+TGG | + | chr5.4:19543941-19543960 | None:intergenic | 50.0% | |
| TGTAGCACCAGTTGTGTGTG+AGG | + | chr5.4:19543694-19543713 | None:intergenic | 50.0% | |
| TTCCGGGTTGTTCTGTTGGT+GGG | - | chr5.4:19542682-19542701 | MS.gene35264:intron | 50.0% | |
| TTCCTAAAGGAGCCTAGCTC+TGG | + | chr5.4:19543574-19543593 | None:intergenic | 50.0% | |
| !! | CCTAGCTCTGGTCAGAATCA+GGG | + | chr5.4:19543562-19543581 | None:intergenic | 50.0% |
| !! | GGGTCAGAAACTTGTTGTGC+AGG | + | chr5.4:19542600-19542619 | None:intergenic | 50.0% |
| !! | GGTTGTTCTGTTGGTGGGTT+GGG | - | chr5.4:19542687-19542706 | MS.gene35264:intron | 50.0% |
| AAGGGGCAAAAGCGGTACAC+AGG | + | chr5.4:19543725-19543744 | None:intergenic | 55.0% | |
| CCCTGATTCTGACCAGAGCT+AGG | - | chr5.4:19543559-19543578 | MS.gene35264:intron | 55.0% | |
| GACCAGAGCTAGGCTCCTTT+AGG | - | chr5.4:19543569-19543588 | MS.gene35264:intron | 55.0% | |
| GGGAGAACGATAGAGTGGGA+AGG | + | chr5.4:19543936-19543955 | None:intergenic | 55.0% | |
| GTTCCGGGTTGTTCTGTTGG+TGG | - | chr5.4:19542681-19542700 | MS.gene35264:intron | 55.0% | |
| TCGGTTCCGGGTTGTTCTGT+TGG | - | chr5.4:19542678-19542697 | MS.gene35264:intron | 55.0% | |
| TGAGATTGCAATGGGGGCAG+CGG | - | chr5.4:19542788-19542807 | MS.gene35264:intron | 55.0% | |
| ! | GGGTTGTTCTGTTGGTGGGT+TGG | - | chr5.4:19542686-19542705 | MS.gene35264:intron | 55.0% |
| !! | GATTCGTGTGCATCGGTTCC+GGG | - | chr5.4:19542666-19542685 | MS.gene35264:intron | 55.0% |
| !! | GCCTAGCTCTGGTCAGAATC+AGG | + | chr5.4:19543563-19543582 | None:intergenic | 55.0% |
| !! | GGATTCGTGTGCATCGGTTC+CGG | - | chr5.4:19542665-19542684 | MS.gene35264:intron | 55.0% |
| !! | TCTGTTGGTGGGTTGGGTGT+TGG | - | chr5.4:19542693-19542712 | MS.gene35264:intron | 55.0% |
| TGCAATGGGGGCAGCGGAGA+GGG | - | chr5.4:19542794-19542813 | MS.gene35264:intron | 65.0% | |
| TTGCAATGGGGGCAGCGGAG+AGG | - | chr5.4:19542793-19542812 | MS.gene35264:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 19541997 | 19545105 | 19541997 | ID=MS.gene35264 |
| chr5.4 | mRNA | 19541997 | 19545105 | 19541997 | ID=MS.gene35264.t1;Parent=MS.gene35264 |
| chr5.4 | exon | 19545031 | 19545105 | 19545031 | ID=MS.gene35264.t1.exon1;Parent=MS.gene35264.t1 |
| chr5.4 | CDS | 19545031 | 19545105 | 19545031 | ID=cds.MS.gene35264.t1;Parent=MS.gene35264.t1 |
| chr5.4 | exon | 19544878 | 19544957 | 19544878 | ID=MS.gene35264.t1.exon2;Parent=MS.gene35264.t1 |
| chr5.4 | CDS | 19544878 | 19544957 | 19544878 | ID=cds.MS.gene35264.t1;Parent=MS.gene35264.t1 |
| chr5.4 | exon | 19544235 | 19544797 | 19544235 | ID=MS.gene35264.t1.exon3;Parent=MS.gene35264.t1 |
| chr5.4 | CDS | 19544235 | 19544797 | 19544235 | ID=cds.MS.gene35264.t1;Parent=MS.gene35264.t1 |
| chr5.4 | exon | 19542513 | 19542615 | 19542513 | ID=MS.gene35264.t1.exon4;Parent=MS.gene35264.t1 |
| chr5.4 | CDS | 19542513 | 19542615 | 19542513 | ID=cds.MS.gene35264.t1;Parent=MS.gene35264.t1 |
| chr5.4 | exon | 19541997 | 19542054 | 19541997 | ID=MS.gene35264.t1.exon5;Parent=MS.gene35264.t1 |
| chr5.4 | CDS | 19541997 | 19542054 | 19541997 | ID=cds.MS.gene35264.t1;Parent=MS.gene35264.t1 |
| Gene Sequence |
| Protein sequence |
