Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39054.t1 | XP_003625136.1 | 97.7 | 217 | 5 | 0 | 1 | 217 | 1 | 217 | 2.60E-101 | 378.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39054.t1 | O22230 | 52.6 | 209 | 74 | 4 | 20 | 205 | 38 | 244 | 8.9e-50 | 198.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39054.t1 | G7KTH6 | 97.7 | 217 | 5 | 0 | 1 | 217 | 1 | 217 | 1.9e-101 | 378.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39054.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene39054 | 0.801028 | 1.09E-48 | -1.69E-46 |
| MS.gene049259 | MS.gene39054 | 0.844219 | 8.66E-59 | -1.69E-46 |
| MS.gene050082 | MS.gene39054 | 0.838908 | 2.17E-57 | -1.69E-46 |
| MS.gene05015 | MS.gene39054 | 0.826367 | 2.82E-54 | -1.69E-46 |
| MS.gene050173 | MS.gene39054 | 0.82684 | 2.17E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene39054 | 0.825894 | 3.65E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene39054 | -0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene050883 | MS.gene39054 | 0.810984 | 8.78E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene39054 | 0.818536 | 1.86E-52 | -1.69E-46 |
| MS.gene051127 | MS.gene39054 | 0.804322 | 2.28E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene39054 | 0.827444 | 1.56E-54 | -1.69E-46 |
| MS.gene051341 | MS.gene39054 | 0.81181 | 5.81E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene39054 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene39054 | 0.822281 | 2.58E-53 | -1.69E-46 |
| MS.gene052053 | MS.gene39054 | 0.817053 | 4.03E-52 | -1.69E-46 |
| MS.gene052089 | MS.gene39054 | 0.826208 | 3.08E-54 | -1.69E-46 |
| MS.gene052560 | MS.gene39054 | 0.842514 | 2.47E-58 | -1.69E-46 |
| MS.gene053420 | MS.gene39054 | 0.833917 | 4.05E-56 | -1.69E-46 |
| MS.gene053561 | MS.gene39054 | 0.819527 | 1.11E-52 | -1.69E-46 |
| MS.gene054056 | MS.gene39054 | 0.858317 | 8.95E-63 | -1.69E-46 |
| MS.gene054057 | MS.gene39054 | 0.818147 | 2.28E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene39054 | 0.80698 | 6.32E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene39054 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene055550 | MS.gene39054 | 0.811167 | 8.01E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene39054 | 0.865144 | 7.31E-65 | -1.69E-46 |
| MS.gene056311 | MS.gene39054 | 0.814431 | 1.55E-51 | -1.69E-46 |
| MS.gene056365 | MS.gene39054 | 0.804178 | 2.45E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene39054 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene39054 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene057226 | MS.gene39054 | 0.810795 | 9.65E-51 | -1.69E-46 |
| MS.gene058068 | MS.gene39054 | 0.810638 | 1.04E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene39054 | 0.82449 | 7.85E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene39054 | 0.820346 | 7.20E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene39054 | 0.8111 | 8.29E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene39054 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene058268 | MS.gene39054 | 0.814756 | 1.31E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene39054 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene058347 | MS.gene39054 | 0.812313 | 4.51E-51 | -1.69E-46 |
| MS.gene058349 | MS.gene39054 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene39054 | 0.845021 | 5.26E-59 | -1.69E-46 |
| MS.gene058494 | MS.gene39054 | 0.812211 | 4.75E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene39054 | 0.829284 | 5.61E-55 | -1.69E-46 |
| MS.gene058629 | MS.gene39054 | 0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene39054 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene05884 | MS.gene39054 | 0.825485 | 4.57E-54 | -1.69E-46 |
| MS.gene059690 | MS.gene39054 | 0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene059694 | MS.gene39054 | 0.817446 | 3.28E-52 | -1.69E-46 |
| MS.gene059697 | MS.gene39054 | 0.809644 | 1.71E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene39054 | -0.804159 | 2.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39054.t1 | MTR_7g091370 | 97.706 | 218 | 5 | 0 | 1 | 218 | 1 | 218 | 3.22e-160 | 442 |
| MS.gene39054.t1 | MTR_5g089170 | 43.781 | 201 | 103 | 2 | 15 | 205 | 18 | 218 | 8.87e-51 | 166 |
| MS.gene39054.t1 | MTR_5g017470 | 43.850 | 187 | 81 | 1 | 16 | 178 | 3 | 189 | 9.01e-50 | 164 |
| MS.gene39054.t1 | MTR_1g100777 | 38.912 | 239 | 100 | 3 | 16 | 208 | 12 | 250 | 1.41e-49 | 164 |
| MS.gene39054.t1 | MTR_5g010680 | 44.162 | 197 | 75 | 2 | 20 | 181 | 22 | 218 | 1.42e-49 | 166 |
| MS.gene39054.t1 | MTR_3g101870 | 37.553 | 237 | 93 | 4 | 2 | 190 | 9 | 238 | 1.68e-47 | 160 |
| MS.gene39054.t1 | MTR_0020s0020 | 43.216 | 199 | 77 | 2 | 20 | 182 | 31 | 229 | 8.50e-44 | 150 |
| MS.gene39054.t1 | MTR_4g088900 | 46.154 | 169 | 83 | 4 | 20 | 181 | 31 | 198 | 2.90e-42 | 142 |
| MS.gene39054.t1 | MTR_5g029680 | 49.020 | 153 | 74 | 2 | 19 | 170 | 29 | 178 | 1.09e-40 | 145 |
| MS.gene39054.t1 | MTR_1g061170 | 46.541 | 159 | 74 | 2 | 12 | 170 | 39 | 186 | 2.78e-39 | 141 |
| MS.gene39054.t1 | MTR_7g095680 | 56.190 | 105 | 42 | 1 | 9 | 113 | 40 | 140 | 1.22e-37 | 134 |
| MS.gene39054.t1 | MTR_3g104550 | 45.062 | 162 | 76 | 3 | 9 | 170 | 37 | 185 | 1.35e-37 | 135 |
| MS.gene39054.t1 | MTR_6g043060 | 56.989 | 93 | 40 | 0 | 21 | 113 | 21 | 113 | 7.51e-37 | 132 |
| MS.gene39054.t1 | MTR_1g102860 | 52.033 | 123 | 56 | 1 | 5 | 127 | 23 | 142 | 1.07e-36 | 131 |
| MS.gene39054.t1 | MTR_1g071360 | 40.860 | 186 | 84 | 4 | 20 | 203 | 30 | 191 | 7.88e-36 | 129 |
| MS.gene39054.t1 | MTR_1g071360 | 40.860 | 186 | 84 | 4 | 20 | 203 | 27 | 188 | 1.30e-35 | 129 |
| MS.gene39054.t1 | MTR_2g100680 | 53.509 | 114 | 49 | 2 | 1 | 113 | 12 | 122 | 1.69e-35 | 130 |
| MS.gene39054.t1 | MTR_8g087540 | 44.366 | 142 | 70 | 1 | 13 | 154 | 3 | 135 | 5.20e-35 | 128 |
| MS.gene39054.t1 | MTR_8g083100 | 58.242 | 91 | 38 | 0 | 23 | 113 | 23 | 113 | 3.70e-33 | 125 |
| MS.gene39054.t1 | MTR_6g086805 | 54.839 | 93 | 42 | 0 | 21 | 113 | 10 | 102 | 4.19e-32 | 119 |
| MS.gene39054.t1 | MTR_2g100670 | 54.255 | 94 | 43 | 0 | 20 | 113 | 31 | 124 | 4.39e-32 | 119 |
| MS.gene39054.t1 | MTR_2g100670 | 54.255 | 94 | 43 | 0 | 20 | 113 | 139 | 232 | 4.38e-31 | 118 |
| MS.gene39054.t1 | MTR_4g077970 | 43.333 | 150 | 80 | 2 | 22 | 170 | 12 | 157 | 4.96e-31 | 119 |
| MS.gene39054.t1 | MTR_2g017890 | 46.667 | 105 | 56 | 0 | 22 | 126 | 15 | 119 | 5.90e-31 | 117 |
| MS.gene39054.t1 | MTR_8g105780 | 54.255 | 94 | 42 | 1 | 21 | 113 | 21 | 114 | 4.15e-30 | 115 |
| MS.gene39054.t1 | MTR_4g045757 | 50.000 | 58 | 29 | 0 | 22 | 79 | 14 | 71 | 5.50e-16 | 70.9 |
| MS.gene39054.t1 | MTR_5g047190 | 37.634 | 93 | 51 | 2 | 30 | 115 | 1 | 93 | 5.07e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39054.t1 | AT2G41690 | 61.667 | 180 | 51 | 3 | 20 | 181 | 38 | 217 | 1.35e-71 | 218 |
| MS.gene39054.t1 | AT5G62020 | 39.313 | 262 | 103 | 7 | 20 | 225 | 21 | 282 | 1.63e-49 | 164 |
| MS.gene39054.t1 | AT1G46264 | 41.784 | 213 | 86 | 3 | 11 | 185 | 23 | 235 | 2.47e-48 | 162 |
| MS.gene39054.t1 | AT4G36990 | 45.641 | 195 | 88 | 3 | 12 | 188 | 4 | 198 | 7.96e-46 | 154 |
| MS.gene39054.t1 | AT4G11660 | 41.589 | 214 | 79 | 2 | 20 | 187 | 57 | 270 | 6.75e-45 | 154 |
| MS.gene39054.t1 | AT1G32330 | 48.026 | 152 | 79 | 0 | 19 | 170 | 34 | 185 | 2.20e-41 | 147 |
| MS.gene39054.t1 | AT1G32330 | 48.026 | 152 | 79 | 0 | 19 | 170 | 34 | 185 | 2.21e-41 | 147 |
| MS.gene39054.t1 | AT4G17750 | 62.105 | 95 | 36 | 0 | 20 | 114 | 50 | 144 | 5.27e-39 | 140 |
| MS.gene39054.t1 | AT5G43840 | 53.043 | 115 | 54 | 0 | 12 | 126 | 9 | 123 | 9.05e-39 | 135 |
| MS.gene39054.t1 | AT3G63350 | 57.009 | 107 | 42 | 1 | 6 | 112 | 16 | 118 | 2.49e-38 | 134 |
| MS.gene39054.t1 | AT2G26150 | 45.679 | 162 | 75 | 4 | 9 | 170 | 35 | 183 | 2.43e-37 | 133 |
| MS.gene39054.t1 | AT2G26150 | 45.679 | 162 | 75 | 4 | 9 | 170 | 35 | 183 | 2.43e-37 | 133 |
| MS.gene39054.t1 | AT3G51910 | 54.286 | 105 | 48 | 0 | 12 | 116 | 19 | 123 | 2.77e-37 | 131 |
| MS.gene39054.t1 | AT5G03720 | 43.860 | 171 | 83 | 3 | 22 | 191 | 55 | 213 | 4.13e-37 | 134 |
| MS.gene39054.t1 | AT5G03720 | 43.860 | 171 | 83 | 3 | 22 | 191 | 55 | 213 | 4.13e-37 | 134 |
| MS.gene39054.t1 | AT3G22830 | 56.604 | 106 | 46 | 0 | 12 | 117 | 51 | 156 | 1.12e-36 | 133 |
| MS.gene39054.t1 | AT3G24520 | 42.763 | 152 | 69 | 2 | 21 | 172 | 16 | 149 | 3.04e-35 | 127 |
| MS.gene39054.t1 | AT3G02990 | 46.980 | 149 | 74 | 1 | 22 | 170 | 23 | 166 | 7.90e-35 | 129 |
| MS.gene39054.t1 | AT5G16820 | 59.140 | 93 | 38 | 0 | 22 | 114 | 27 | 119 | 2.19e-33 | 125 |
| MS.gene39054.t1 | AT5G16820 | 59.140 | 93 | 38 | 0 | 22 | 114 | 27 | 119 | 2.19e-33 | 125 |
| MS.gene39054.t1 | AT4G13980 | 49.533 | 107 | 54 | 0 | 23 | 129 | 24 | 130 | 1.70e-32 | 123 |
| MS.gene39054.t1 | AT5G54070 | 52.174 | 92 | 44 | 0 | 21 | 112 | 70 | 161 | 8.84e-32 | 119 |
| MS.gene39054.t1 | AT5G45710 | 36.493 | 211 | 111 | 4 | 15 | 215 | 6 | 203 | 1.03e-29 | 113 |
| MS.gene39054.t1 | AT5G45710 | 36.493 | 211 | 111 | 4 | 15 | 215 | 6 | 203 | 1.03e-29 | 113 |
| MS.gene39054.t1 | AT1G67970 | 41.509 | 159 | 78 | 4 | 21 | 176 | 18 | 164 | 9.43e-29 | 111 |
| MS.gene39054.t1 | AT4G18880 | 49.524 | 105 | 53 | 0 | 22 | 126 | 15 | 119 | 4.31e-26 | 104 |
| MS.gene39054.t1 | AT4G18870 | 39.560 | 91 | 55 | 0 | 19 | 109 | 143 | 233 | 4.81e-20 | 86.7 |
| MS.gene39054.t1 | AT4G18870 | 36.842 | 95 | 59 | 1 | 15 | 109 | 6 | 99 | 1.31e-16 | 77.4 |
| MS.gene39054.t1 | AT1G77570 | 34.444 | 90 | 56 | 2 | 23 | 109 | 27 | 116 | 2.81e-11 | 60.1 |
Find 47 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGAAAGAAGGATTAAA+AGG | 0.312750 | 7.4:-17608915 | MS.gene39054:CDS |
| TTTGATCTTCATCAGAATCT+TGG | 0.337536 | 7.4:+17609163 | None:intergenic |
| ATAAAAGGCCAATGCTGTTT+GGG | 0.344706 | 7.4:-17608957 | MS.gene39054:CDS |
| AAGCTAAAGATGATGATAAA+AGG | 0.345414 | 7.4:-17608972 | MS.gene39054:CDS |
| GTAAAGTTGCAACAAGTAGA+TGG | 0.356542 | 7.4:-17609287 | MS.gene39054:CDS |
| GTGTAAGGAACTACTTGATT+TGG | 0.391192 | 7.4:-17609028 | MS.gene39054:CDS |
| AATGCTGTTTGGGGTGAGAT+TGG | 0.405597 | 7.4:-17608947 | MS.gene39054:CDS |
| GGAGTAGTTATTAGTGAGAA+GGG | 0.409709 | 7.4:-17610568 | MS.gene39054:CDS |
| GATAAAAGGCCAATGCTGTT+TGG | 0.412696 | 7.4:-17608958 | MS.gene39054:CDS |
| TATTAGTGAGAAGGGATTGT+TGG | 0.414198 | 7.4:-17610560 | MS.gene39054:CDS |
| CGATGAAGGAACGGCGTTTG+TGG | 0.421292 | 7.4:-17610446 | MS.gene39054:CDS |
| TCATCAACCTCATCAACTTC+GGG | 0.428531 | 7.4:-17609135 | MS.gene39054:CDS |
| GATATCACACCATCGGTTAT+CGG | 0.429226 | 7.4:+17610475 | None:intergenic |
| GGCGTTTGTGGTGTGGCAGC+CGG | 0.436959 | 7.4:-17610434 | MS.gene39054:CDS |
| AGGAGTAGTTATTAGTGAGA+AGG | 0.465195 | 7.4:-17610569 | MS.gene39054:CDS |
| TGCAATGAAAGATTCAAGAA+AGG | 0.469330 | 7.4:-17609258 | MS.gene39054:CDS |
| GAGAGTTACTATCCGAGATT+CGG | 0.475046 | 7.4:-17609230 | MS.gene39054:CDS |
| TTGCTATGCTTGAAGAGTGT+TGG | 0.486048 | 7.4:+17610388 | None:intergenic |
| ATCATCAACCTCATCAACTT+CGG | 0.493338 | 7.4:-17609136 | MS.gene39054:CDS |
| CTGAGCTAACAAGCATGAAA+AGG | 0.494508 | 7.4:-17609053 | MS.gene39054:CDS |
| AAGCATGAAAAGGAAGTGTA+AGG | 0.516645 | 7.4:-17609043 | MS.gene39054:CDS |
| CATGTATGTCTTCAACAAGA+AGG | 0.524524 | 7.4:+17610510 | None:intergenic |
| GAGCAACAAGCAACAACAAA+CGG | 0.533270 | 7.4:-17609193 | MS.gene39054:CDS |
| ATGTTCAACAAGGAGAAAGA+AGG | 0.541421 | 7.4:-17608924 | MS.gene39054:CDS |
| GTCTTCAACAAGAAGGGTGA+TGG | 0.545694 | 7.4:+17610517 | None:intergenic |
| GAGAAGGGATTGTTGGAATG+TGG | 0.547926 | 7.4:-17610553 | MS.gene39054:CDS |
| AATCTCACCCCAAACAGCAT+TGG | 0.559832 | 7.4:+17608949 | None:intergenic |
| CTTGTTGAAGACATACATGT+TGG | 0.560125 | 7.4:-17610506 | MS.gene39054:CDS |
| AGATTCGGAGAAGAAAAGCT+TGG | 0.562625 | 7.4:-17609215 | MS.gene39054:CDS |
| TAACCGATGGTGTGATATCG+TGG | 0.574458 | 7.4:-17610471 | MS.gene39054:CDS |
| TAAAGTTGCAACAAGTAGAT+GGG | 0.577262 | 7.4:-17609286 | MS.gene39054:CDS |
| ATGTATGTCTTCAACAAGAA+GGG | 0.585625 | 7.4:+17610511 | None:intergenic |
| GTTTGTGGTGTGGCAGCCGG+CGG | 0.593281 | 7.4:-17610431 | MS.gene39054:CDS |
| TTCGGGTTACACTAATCTAG+TGG | 0.594205 | 7.4:-17609118 | MS.gene39054:CDS |
| GTCGAGGATCCGATAACCGA+TGG | 0.607491 | 7.4:-17610484 | MS.gene39054:CDS |
| AAAGAAATAGAAATAATGGA+AGG | 0.609607 | 7.4:-17610589 | None:intergenic |
| AGTGTAACCCGAAGTTGATG+AGG | 0.609806 | 7.4:+17609128 | None:intergenic |
| GTGATATCGTGGAACGATGA+AGG | 0.614245 | 7.4:-17610460 | MS.gene39054:CDS |
| ATCGTGGAACGATGAAGGAA+CGG | 0.618716 | 7.4:-17610455 | MS.gene39054:CDS |
| GAAGACATACATGTTGGTCG+AGG | 0.623457 | 7.4:-17610500 | MS.gene39054:CDS |
| AAGGAACGGCGTTTGTGGTG+TGG | 0.626326 | 7.4:-17610441 | MS.gene39054:CDS |
| ATATCACGAGCAAACTCCGC+CGG | 0.632816 | 7.4:+17610415 | None:intergenic |
| TATGCTTGAAGAGTGTTGGA+AGG | 0.652326 | 7.4:+17610392 | None:intergenic |
| GTGAGATTGGATGTTCAACA+AGG | 0.660188 | 7.4:-17608934 | MS.gene39054:CDS |
| GCGACTCAAAGACGAAAATG+TGG | 0.663139 | 7.4:-17609085 | MS.gene39054:CDS |
| GTTCCACGATATCACACCAT+CGG | 0.688849 | 7.4:+17610468 | None:intergenic |
| TAAAAGGCCAATGCTGTTTG+GGG | 0.694963 | 7.4:-17608956 | MS.gene39054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATATCTATTTGT+GGG | - | chr7.4:17610119-17610138 | MS.gene39054:intron | 10.0% |
| !! | TAAAATTAAATATCTATTTG+TGG | - | chr7.4:17610118-17610137 | MS.gene39054:intron | 10.0% |
| !!! | TGTTTATTATTTCAAATTTT+GGG | + | chr7.4:17609388-17609407 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTGTAAAGTATT+AGG | - | chr7.4:17609265-17609284 | MS.gene39054:CDS | 10.0% |
| !! | AATAATAAACAGAGAAAAAA+TGG | - | chr7.4:17609397-17609416 | MS.gene39054:intron | 15.0% |
| !! | TTCAATTTATACCAAAAAAA+TGG | - | chr7.4:17610440-17610459 | MS.gene39054:CDS | 15.0% |
| !!! | AATTCATTGTTTATTTTTGA+AGG | - | chr7.4:17609764-17609783 | MS.gene39054:intron | 15.0% |
| !!! | AGTATTTTCAATTAAGATAT+AGG | - | chr7.4:17609597-17609616 | MS.gene39054:intron | 15.0% |
| !!! | CTGTTTATTATTTCAAATTT+TGG | + | chr7.4:17609389-17609408 | None:intergenic | 15.0% |
| !!! | GTAAAATTTTGTTAAGAAAA+AGG | - | chr7.4:17609434-17609453 | MS.gene39054:intron | 15.0% |
| !!! | GTATTTTCAATTAAGATATA+GGG | - | chr7.4:17609598-17609617 | MS.gene39054:intron | 15.0% |
| !!! | GTTTATTATTTCAAATTTTG+GGG | + | chr7.4:17609387-17609406 | None:intergenic | 15.0% |
| !! | AAAGGATAGGAAAAAAAAAA+AGG | - | chr7.4:17609452-17609471 | MS.gene39054:intron | 20.0% |
| !! | ATATTTGTTTAACCTAGTTT+AGG | - | chr7.4:17609513-17609532 | MS.gene39054:intron | 20.0% |
| !! | ATCTAAATATACGATCAATT+TGG | + | chr7.4:17609320-17609339 | None:intergenic | 20.0% |
| !! | TTCAAGAAAGAATTCATATT+TGG | + | chr7.4:17610027-17610046 | None:intergenic | 20.0% |
| !!! | AAAAAAAAACTAGTTTAGCT+AGG | - | chr7.4:17609549-17609568 | MS.gene39054:intron | 20.0% |
| !!! | AGAGAATATTTTATATCTTC+TGG | + | chr7.4:17609629-17609648 | None:intergenic | 20.0% |
| !!! | ATTTTGTTAAGAAAAAGGAT+AGG | - | chr7.4:17609439-17609458 | MS.gene39054:intron | 20.0% |
| !!! | TGTATTAAAAGCATGTTTTA+TGG | + | chr7.4:17610004-17610023 | None:intergenic | 20.0% |
| ! | AAGCTAAAGATGATGATAAA+AGG | - | chr7.4:17610472-17610491 | MS.gene39054:CDS | 25.0% |
| ! | AATATACGATCAATTTGGAA+TGG | + | chr7.4:17609315-17609334 | None:intergenic | 25.0% |
| ! | AATATAGTTAACCTGTTTCA+TGG | + | chr7.4:17609498-17609517 | None:intergenic | 25.0% |
| ! | ATAAACAGAGAAAAAATGGA+TGG | - | chr7.4:17609401-17609420 | MS.gene39054:intron | 25.0% |
| ! | ATAGAAAATTCAATGTTGGT+GGG | - | chr7.4:17609790-17609809 | MS.gene39054:intron | 25.0% |
| ! | CTCATGTTAATTGACATTAT+GGG | - | chr7.4:17609680-17609699 | MS.gene39054:intron | 25.0% |
| ! | TCATGTTAATTGACATTATG+GGG | - | chr7.4:17609681-17609700 | MS.gene39054:intron | 25.0% |
| ! | TCTCATGTTAATTGACATTA+TGG | - | chr7.4:17609679-17609698 | MS.gene39054:intron | 25.0% |
| ! | TTTGTTAAATGTGAAGGAAT+TGG | - | chr7.4:17609573-17609592 | MS.gene39054:intron | 25.0% |
| !! | TTTTCAATTAAGATATAGGG+TGG | - | chr7.4:17609601-17609620 | MS.gene39054:intron | 25.0% |
| !!! | TCATTGTTTATTTTTGAAGG+AGG | - | chr7.4:17609767-17609786 | MS.gene39054:intron | 25.0% |
| AAGGAGAAAGAAGGATTAAA+AGG | - | chr7.4:17610529-17610548 | MS.gene39054:CDS | 30.0% | |
| ACAACACTTAATAAGCAACA+TGG | - | chr7.4:17609947-17609966 | MS.gene39054:intron | 30.0% | |
| ATCTATTTGTGGGATGTATA+GGG | - | chr7.4:17610129-17610148 | MS.gene39054:intron | 30.0% | |
| ATGTATGTCTTCAACAAGAA+GGG | + | chr7.4:17608936-17608955 | None:intergenic | 30.0% | |
| CATGTTAATTGACATTATGG+GGG | - | chr7.4:17609682-17609701 | MS.gene39054:intron | 30.0% | |
| GACTTGTGAGTTTGAATTTA+AGG | + | chr7.4:17609732-17609751 | None:intergenic | 30.0% | |
| GAGGATAGAAAATTCAATGT+TGG | - | chr7.4:17609786-17609805 | MS.gene39054:intron | 30.0% | |
| GATAGAAAATTCAATGTTGG+TGG | - | chr7.4:17609789-17609808 | MS.gene39054:intron | 30.0% | |
| TAAAGTTGCAACAAGTAGAT+GGG | - | chr7.4:17610158-17610177 | MS.gene39054:intron | 30.0% | |
| TACCAAAAAAATGGAAGAAG+AGG | - | chr7.4:17610449-17610468 | MS.gene39054:CDS | 30.0% | |
| TATCTATTTGTGGGATGTAT+AGG | - | chr7.4:17610128-17610147 | MS.gene39054:intron | 30.0% | |
| TCAACACAAAAACCTAAACT+AGG | + | chr7.4:17609528-17609547 | None:intergenic | 30.0% | |
| TCTTTCATGATGAACTTAAG+TGG | - | chr7.4:17610066-17610085 | MS.gene39054:intron | 30.0% | |
| TGCAATGAAAGATTCAAGAA+AGG | - | chr7.4:17610186-17610205 | MS.gene39054:intron | 30.0% | |
| TTAGATGTATGTACGTACAT+AGG | + | chr7.4:17609111-17609130 | None:intergenic | 30.0% | |
| TTTGATCTTCATCAGAATCT+TGG | + | chr7.4:17610284-17610303 | None:intergenic | 30.0% | |
| !!! | CTAGGTTTTGTTAAATGTGA+AGG | - | chr7.4:17609567-17609586 | MS.gene39054:intron | 30.0% |
| !!! | TTCCTCTTCTTCCATTTTTT+TGG | + | chr7.4:17610454-17610473 | None:intergenic | 30.0% |
| AGGAGTAGTTATTAGTGAGA+AGG | - | chr7.4:17608875-17608894 | MS.gene39054:CDS | 35.0% | |
| ATCATCAACCTCATCAACTT+CGG | - | chr7.4:17610308-17610327 | MS.gene39054:intron | 35.0% | |
| ATGTTCAACAAGGAGAAAGA+AGG | - | chr7.4:17610520-17610539 | MS.gene39054:CDS | 35.0% | |
| ATTAACATGAGAAACGAGGA+TGG | + | chr7.4:17609671-17609690 | None:intergenic | 35.0% | |
| CATGTATGTCTTCAACAAGA+AGG | + | chr7.4:17608937-17608956 | None:intergenic | 35.0% | |
| CTTGTTGAAGACATACATGT+TGG | - | chr7.4:17608938-17608957 | MS.gene39054:CDS | 35.0% | |
| GGAGTAGTTATTAGTGAGAA+GGG | - | chr7.4:17608876-17608895 | MS.gene39054:CDS | 35.0% | |
| GTAAAGTTGCAACAAGTAGA+TGG | - | chr7.4:17610157-17610176 | MS.gene39054:intron | 35.0% | |
| GTCAATTAACATGAGAAACG+AGG | + | chr7.4:17609675-17609694 | None:intergenic | 35.0% | |
| GTGTAAGGAACTACTTGATT+TGG | - | chr7.4:17610416-17610435 | MS.gene39054:CDS | 35.0% | |
| TAATTGACATTATGGGGGTT+TGG | - | chr7.4:17609687-17609706 | MS.gene39054:intron | 35.0% | |
| TATTAGTGAGAAGGGATTGT+TGG | - | chr7.4:17608884-17608903 | MS.gene39054:CDS | 35.0% | |
| ! | AAGCATGAAAAGGAAGTGTA+AGG | - | chr7.4:17610401-17610420 | MS.gene39054:CDS | 35.0% |
| ! | ATAAAAGGCCAATGCTGTTT+GGG | - | chr7.4:17610487-17610506 | MS.gene39054:CDS | 35.0% |
| ! | GTTTTATGGTGCCTTACTAA+TGG | + | chr7.4:17609990-17610009 | None:intergenic | 35.0% |
| ! | TGAGTAAAGCACCATTAGTA+AGG | - | chr7.4:17609976-17609995 | MS.gene39054:intron | 35.0% |
| !!! | GCAACTTCTCTAGTTTTGTA+CGG | - | chr7.4:17609075-17609094 | MS.gene39054:CDS | 35.0% |
| AGATTCGGAGAAGAAAAGCT+TGG | - | chr7.4:17610229-17610248 | MS.gene39054:intron | 40.0% | |
| CTGAGCTAACAAGCATGAAA+AGG | - | chr7.4:17610391-17610410 | MS.gene39054:CDS | 40.0% | |
| GAGAGTTACTATCCGAGATT+CGG | - | chr7.4:17610214-17610233 | MS.gene39054:intron | 40.0% | |
| GAGCAACAAGCAACAACAAA+CGG | - | chr7.4:17610251-17610270 | MS.gene39054:intron | 40.0% | |
| GATAAAAGGCCAATGCTGTT+TGG | - | chr7.4:17610486-17610505 | MS.gene39054:CDS | 40.0% | |
| GTGAGATTGGATGTTCAACA+AGG | - | chr7.4:17610510-17610529 | MS.gene39054:CDS | 40.0% | |
| TCATCAACCTCATCAACTTC+GGG | - | chr7.4:17610309-17610328 | MS.gene39054:intron | 40.0% | |
| TCATGAGTACTCCATGAAAC+AGG | - | chr7.4:17609484-17609503 | MS.gene39054:intron | 40.0% | |
| ! | AGCTTTTCTTCTCCGAATCT+CGG | + | chr7.4:17610229-17610248 | None:intergenic | 40.0% |
| ! | GATATCACACCATCGGTTAT+CGG | + | chr7.4:17608972-17608991 | None:intergenic | 40.0% |
| ! | TAAAAGGCCAATGCTGTTTG+GGG | - | chr7.4:17610488-17610507 | MS.gene39054:CDS | 40.0% |
| ! | TTCGGGTTACACTAATCTAG+TGG | - | chr7.4:17610326-17610345 | MS.gene39054:intron | 40.0% |
| ! | TTGCTATGCTTGAAGAGTGT+TGG | + | chr7.4:17609059-17609078 | None:intergenic | 40.0% |
| !! | ATTATGGGGGTTTGGTAATG+AGG | - | chr7.4:17609695-17609714 | MS.gene39054:intron | 40.0% |
| !! | TATGCTTGAAGAGTGTTGGA+AGG | + | chr7.4:17609055-17609074 | None:intergenic | 40.0% |
| AATCTCACCCCAAACAGCAT+TGG | + | chr7.4:17610498-17610517 | None:intergenic | 45.0% | |
| ATCGTGGAACGATGAAGGAA+CGG | - | chr7.4:17608989-17609008 | MS.gene39054:CDS | 45.0% | |
| GAAGACATACATGTTGGTCG+AGG | - | chr7.4:17608944-17608963 | MS.gene39054:CDS | 45.0% | |
| GAGAAGGGATTGTTGGAATG+TGG | - | chr7.4:17608891-17608910 | MS.gene39054:CDS | 45.0% | |
| GCGACTCAAAGACGAAAATG+TGG | - | chr7.4:17610359-17610378 | MS.gene39054:CDS | 45.0% | |
| GTCTTCAACAAGAAGGGTGA+TGG | + | chr7.4:17608930-17608949 | None:intergenic | 45.0% | |
| GTGATATCGTGGAACGATGA+AGG | - | chr7.4:17608984-17609003 | MS.gene39054:CDS | 45.0% | |
| GTTCCACGATATCACACCAT+CGG | + | chr7.4:17608979-17608998 | None:intergenic | 45.0% | |
| TAACCGATGGTGTGATATCG+TGG | - | chr7.4:17608973-17608992 | MS.gene39054:CDS | 45.0% | |
| TCTCTCCCTATTCAATACCC+CGG | - | chr7.4:17609644-17609663 | MS.gene39054:intron | 45.0% | |
| ! | AATGCTGTTTGGGGTGAGAT+TGG | - | chr7.4:17610497-17610516 | MS.gene39054:CDS | 45.0% |
| !! | AGTGTAACCCGAAGTTGATG+AGG | + | chr7.4:17610319-17610338 | None:intergenic | 45.0% |
| !! | ATGGTCCGGGGTATTGAATA+GGG | + | chr7.4:17609652-17609671 | None:intergenic | 45.0% |
| ATATCACGAGCAAACTCCGC+CGG | + | chr7.4:17609032-17609051 | None:intergenic | 50.0% | |
| ATGAGAAACGAGGATGGTCC+GGG | + | chr7.4:17609665-17609684 | None:intergenic | 50.0% | |
| CATGAGAAACGAGGATGGTC+CGG | + | chr7.4:17609666-17609685 | None:intergenic | 50.0% | |
| !! | GATGGTCCGGGGTATTGAAT+AGG | + | chr7.4:17609653-17609672 | None:intergenic | 50.0% |
| AAGGAACGGCGTTTGTGGTG+TGG | - | chr7.4:17609003-17609022 | MS.gene39054:CDS | 55.0% | |
| CGATGAAGGAACGGCGTTTG+TGG | - | chr7.4:17608998-17609017 | MS.gene39054:CDS | 55.0% | |
| GTCGAGGATCCGATAACCGA+TGG | - | chr7.4:17608960-17608979 | MS.gene39054:CDS | 55.0% | |
| TGAGAAACGAGGATGGTCCG+GGG | + | chr7.4:17609664-17609683 | None:intergenic | 55.0% | |
| GGCGTTTGTGGTGTGGCAGC+CGG | - | chr7.4:17609010-17609029 | MS.gene39054:CDS | 65.0% | |
| GTTTGTGGTGTGGCAGCCGG+CGG | - | chr7.4:17609013-17609032 | MS.gene39054:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17608870 | 17610596 | 17608870 | ID=MS.gene39054 |
| chr7.4 | mRNA | 17608870 | 17610596 | 17608870 | ID=MS.gene39054.t1;Parent=MS.gene39054 |
| chr7.4 | exon | 17610354 | 17610596 | 17610354 | ID=MS.gene39054.t1.exon1;Parent=MS.gene39054.t1 |
| chr7.4 | CDS | 17610354 | 17610596 | 17610354 | ID=cds.MS.gene39054.t1;Parent=MS.gene39054.t1 |
| chr7.4 | exon | 17608870 | 17609316 | 17608870 | ID=MS.gene39054.t1.exon2;Parent=MS.gene39054.t1 |
| chr7.4 | CDS | 17608870 | 17609316 | 17608870 | ID=cds.MS.gene39054.t1;Parent=MS.gene39054.t1 |
| Gene Sequence |
| Protein sequence |
