Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41173.t1 | XP_013456124.1 | 97.4 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 2.60E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41173.t1 | O95208 | 33.1 | 151 | 96 | 2 | 27 | 173 | 14 | 163 | 1.6e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41173.t1 | A0A072UWA8 | 97.4 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 1.9e-165 | 591.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene41173 | -0.827394 | 1.60E-54 | -1.69E-46 |
| MS.gene049259 | MS.gene41173 | 0.806925 | 6.49E-50 | -1.69E-46 |
| MS.gene050082 | MS.gene41173 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene41173 | -0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene050173 | MS.gene41173 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene41173 | -0.8266 | 2.48E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene41173 | -0.805815 | 1.11E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene41173 | -0.845935 | 2.98E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene41173 | -0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene41173 | -0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene41173 | -0.830945 | 2.21E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene41173 | -0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene41173 | -0.8351 | 2.04E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene41173 | -0.833229 | 6.01E-56 | -1.69E-46 |
| MS.gene050904 | MS.gene41173 | -0.811793 | 5.86E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene41173 | -0.8052 | 1.50E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene41173 | 0.802362 | 5.82E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene41173 | 0.83777 | 4.27E-57 | -1.69E-46 |
| MS.gene051268 | MS.gene41173 | -0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene051364 | MS.gene41173 | 0.822231 | 2.65E-53 | -1.69E-46 |
| MS.gene051366 | MS.gene41173 | 0.839821 | 1.26E-57 | -1.69E-46 |
| MS.gene051367 | MS.gene41173 | 0.828682 | 7.85E-55 | -1.69E-46 |
| MS.gene051410 | MS.gene41173 | 0.818971 | 1.48E-52 | -1.69E-46 |
| MS.gene052566 | MS.gene41173 | 0.808462 | 3.06E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene41173 | 0.831059 | 2.07E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene41173 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene054056 | MS.gene41173 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene054057 | MS.gene41173 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene41173 | -0.823792 | 1.14E-53 | -1.69E-46 |
| MS.gene055202 | MS.gene41173 | 0.810498 | 1.12E-50 | -1.69E-46 |
| MS.gene055204 | MS.gene41173 | 0.802382 | 5.76E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene41173 | -0.839415 | 1.61E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene41173 | -0.803156 | 3.99E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene41173 | 0.843301 | 1.52E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene41173 | -0.837376 | 5.39E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene41173 | -0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene41173 | 0.825339 | 4.95E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene41173 | 0.800384 | 1.48E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene41173 | 0.863767 | 1.97E-64 | -1.69E-46 |
| MS.gene058173 | MS.gene41173 | 0.85453 | 1.16E-61 | -1.69E-46 |
| MS.gene058175 | MS.gene41173 | 0.867775 | 1.07E-65 | -1.69E-46 |
| MS.gene058334 | MS.gene41173 | 0.816035 | 6.80E-52 | -1.69E-46 |
| MS.gene058349 | MS.gene41173 | 0.800409 | 1.46E-48 | -1.69E-46 |
| MS.gene05884 | MS.gene41173 | 0.832205 | 1.08E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene41173 | -0.829861 | 4.06E-55 | -1.69E-46 |
| MS.gene059045 | MS.gene41173 | 0.826371 | 2.81E-54 | -1.69E-46 |
| MS.gene059701 | MS.gene41173 | 0.826167 | 3.15E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene41173 | -0.856652 | 2.78E-62 | -1.69E-46 |
| MS.gene060595 | MS.gene41173 | 0.840079 | 1.08E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene41173 | -0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene41173 | -0.802288 | 6.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41173.t1 | MTR_4g063895 | 97.394 | 307 | 8 | 0 | 1 | 307 | 1 | 307 | 0.0 | 619 |
| MS.gene41173.t1 | MTR_4g063895 | 97.794 | 272 | 6 | 0 | 36 | 307 | 1 | 272 | 0.0 | 551 |
| MS.gene41173.t1 | MTR_1g075760 | 44.311 | 167 | 93 | 0 | 7 | 173 | 8 | 174 | 2.11e-47 | 161 |
| MS.gene41173.t1 | MTR_7g006280 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 8.18e-18 | 84.3 |
| MS.gene41173.t1 | MTR_1g016980 | 30.137 | 146 | 101 | 1 | 16 | 161 | 11 | 155 | 1.52e-17 | 83.2 |
| MS.gene41173.t1 | MTR_7g006100 | 31.206 | 141 | 81 | 2 | 37 | 172 | 613 | 742 | 2.79e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41173.t1 | AT3G46540 | 57.471 | 261 | 84 | 7 | 1 | 248 | 13 | 259 | 2.34e-82 | 251 |
| MS.gene41173.t1 | AT3G46540 | 57.471 | 261 | 84 | 7 | 1 | 248 | 1 | 247 | 2.82e-82 | 251 |
| MS.gene41173.t1 | AT3G46540 | 54.222 | 225 | 77 | 6 | 36 | 248 | 1 | 211 | 4.77e-62 | 197 |
| MS.gene41173.t1 | AT1G08670 | 45.714 | 175 | 93 | 2 | 1 | 173 | 5 | 179 | 4.62e-48 | 160 |
| MS.gene41173.t1 | AT3G23350 | 43.931 | 173 | 95 | 1 | 5 | 175 | 7 | 179 | 1.13e-46 | 159 |
| MS.gene41173.t1 | AT3G23350 | 43.931 | 173 | 95 | 1 | 5 | 175 | 6 | 178 | 1.16e-46 | 159 |
| MS.gene41173.t1 | AT1G08670 | 41.803 | 122 | 70 | 1 | 53 | 173 | 1 | 122 | 1.86e-28 | 108 |
| MS.gene41173.t1 | AT2G43160 | 28.571 | 217 | 126 | 4 | 16 | 228 | 12 | 203 | 6.05e-18 | 84.7 |
| MS.gene41173.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene41173.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene41173.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene41173.t1 | AT2G43160 | 32.877 | 146 | 94 | 2 | 16 | 161 | 12 | 153 | 7.01e-18 | 84.7 |
| MS.gene41173.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene41173.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene41173.t1 | AT5G11710 | 28.082 | 146 | 104 | 1 | 16 | 161 | 11 | 155 | 4.51e-16 | 79.0 |
| MS.gene41173.t1 | AT3G59290 | 35.433 | 127 | 81 | 1 | 34 | 160 | 27 | 152 | 6.60e-16 | 79.0 |
Find 67 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTCTGCTACACTTTC+TGG | 0.104086 | 4.1:-36562712 | None:intergenic |
| CATTTCTGTTGTTGAATTAA+AGG | 0.166107 | 4.1:-36563559 | None:intergenic |
| ATCAAGTTCTAAAGAAAATA+TGG | 0.298192 | 4.1:+36563428 | MS.gene41173:CDS |
| GCGGAGAAGACGATTCTTCT+AGG | 0.298733 | 4.1:+36563505 | MS.gene41173:CDS |
| TGGAGAGTCAGAATCACTTT+TGG | 0.312508 | 4.1:+36563479 | MS.gene41173:CDS |
| CTAAATTTGAAAAGAAGAAT+TGG | 0.317894 | 4.1:+36562638 | MS.gene41173:CDS |
| ACCCGTTCTGATCAATATAT+TGG | 0.319311 | 4.1:-36562774 | None:intergenic |
| ATTTCTGTTGTTGAATTAAA+GGG | 0.325448 | 4.1:-36563558 | None:intergenic |
| GACAATTTGCAGGTTCAATT+GGG | 0.329268 | 4.1:+36563089 | MS.gene41173:intron |
| TTATAGAGATTCTACATAAA+AGG | 0.331852 | 4.1:+36562373 | MS.gene41173:CDS |
| TGACAATTTGCAGGTTCAAT+TGG | 0.347533 | 4.1:+36563088 | MS.gene41173:intron |
| ATCATCATCTTTGTATATCA+TGG | 0.354388 | 4.1:-36563373 | None:intergenic |
| TCAAGAGGTATTCAAGGTTT+CGG | 0.389050 | 4.1:+36563204 | MS.gene41173:CDS |
| AATTCATCTTTCTCAACCTT+GGG | 0.396896 | 4.1:+36563339 | MS.gene41173:CDS |
| AAGAAAATATGGAACCTAGT+AGG | 0.398302 | 4.1:+36563439 | MS.gene41173:CDS |
| TAATTCATCTTTCTCAACCT+TGG | 0.418793 | 4.1:+36563338 | MS.gene41173:CDS |
| CTGATTTCTTTCTCACAGTT+AGG | 0.420075 | 4.1:-36563113 | None:intergenic |
| AGAGAGAGTAATGAAACTAT+TGG | 0.421249 | 4.1:+36563134 | MS.gene41173:CDS |
| CTTGAGCATTTGTTGACTCA+TGG | 0.422333 | 4.1:+36562688 | MS.gene41173:CDS |
| TCCAATATATTGATCAGAAC+GGG | 0.423953 | 4.1:+36562773 | MS.gene41173:CDS |
| AAGAAAGAAACCAATGTAGA+AGG | 0.430906 | 4.1:+36563178 | MS.gene41173:CDS |
| CAATGATTTCTCGCGAAGAA+TGG | 0.431381 | 4.1:-36563259 | None:intergenic |
| ATGATAGAAGAGGCAACTAA+TGG | 0.435665 | 4.1:+36562273 | MS.gene41173:CDS |
| AAGACGATTCTTCTAGGCTT+GGG | 0.437856 | 4.1:+36563511 | MS.gene41173:CDS |
| TCCTTGCTTTCTGCTAGAGA+TGG | 0.439226 | 4.1:+36563594 | MS.gene41173:CDS |
| ATATACAAAGATGATGATAT+AGG | 0.448838 | 4.1:+36563378 | MS.gene41173:CDS |
| CTCAAACAACTACGAAGATC+AGG | 0.449845 | 4.1:+36563311 | MS.gene41173:CDS |
| AAATCATTGCCAACCACATT+CGG | 0.454765 | 4.1:+36563273 | MS.gene41173:CDS |
| AAGTTCCACACCTCCCTACT+AGG | 0.456583 | 4.1:-36563453 | None:intergenic |
| AGGTTATCAAGAGGTATTCA+AGG | 0.457152 | 4.1:+36563198 | MS.gene41173:CDS |
| GAAGACGATTCTTCTAGGCT+TGG | 0.466472 | 4.1:+36563510 | MS.gene41173:CDS |
| AGAAAATATGGAACCTAGTA+GGG | 0.473708 | 4.1:+36563440 | MS.gene41173:CDS |
| GATCTGAGGGTTACAGTAGT+TGG | 0.473866 | 4.1:-36562309 | None:intergenic |
| CACAATCAAGGAATTGTAAG+AGG | 0.479866 | 4.1:-36562665 | None:intergenic |
| TCGCGAAGAATGGCTTGTGT+TGG | 0.484587 | 4.1:-36563249 | None:intergenic |
| TAGTAGGGAGGTGTGGAACT+TGG | 0.490662 | 4.1:+36563455 | MS.gene41173:CDS |
| CTCTTGATAACCTTCTACAT+TGG | 0.492948 | 4.1:-36563188 | None:intergenic |
| GTTACAGTAGTTGGTGCCCA+TGG | 0.502809 | 4.1:-36562300 | None:intergenic |
| AGGGAGGTGTGGAACTTGGA+TGG | 0.503033 | 4.1:+36563459 | MS.gene41173:CDS |
| TAACAAGCTCACAGTTCTGC+AGG | 0.506386 | 4.1:-36562116 | None:intergenic |
| CAAATGCTCAAGCACAATCA+AGG | 0.506589 | 4.1:-36562677 | None:intergenic |
| TATATTGGAAACCTTTCAGC+TGG | 0.516997 | 4.1:-36562759 | None:intergenic |
| AGCCTTTGAAATTGATCTGA+GGG | 0.520257 | 4.1:-36562322 | None:intergenic |
| AGGCAACTAATGGAAATCCA+TGG | 0.532106 | 4.1:+36562283 | MS.gene41173:CDS |
| GTAATGAAACTATTGGAAGA+AGG | 0.539452 | 4.1:+36563141 | MS.gene41173:CDS |
| GCTAGAGATGGAATACTACA+AGG | 0.551404 | 4.1:+36563606 | MS.gene41173:CDS |
| CAGCCTTTGAAATTGATCTG+AGG | 0.552074 | 4.1:-36562323 | None:intergenic |
| TTCCAATATATTGATCAGAA+CGG | 0.554896 | 4.1:+36562772 | MS.gene41173:CDS |
| GATGTTATTGACCAGCTGAA+AGG | 0.568995 | 4.1:+36562748 | MS.gene41173:CDS |
| TCCATCTCTAGCAGAAAGCA+AGG | 0.572809 | 4.1:-36563595 | None:intergenic |
| TTTCTGTTGTTGAATTAAAG+GGG | 0.580526 | 4.1:-36563557 | None:intergenic |
| AATTTGAAAAGAAGAATTGG+AGG | 0.586374 | 4.1:+36562641 | MS.gene41173:CDS |
| ACAATTTGCAGGTTCAATTG+GGG | 0.587617 | 4.1:+36563090 | MS.gene41173:intron |
| TTGAGCTAGATGATTATAGG+AGG | 0.590229 | 4.1:+36562349 | MS.gene41173:CDS |
| GGCAACTAATGGAAATCCAT+GGG | 0.593719 | 4.1:+36562284 | MS.gene41173:CDS |
| AACCCTCAGATCAATTTCAA+AGG | 0.602620 | 4.1:+36562320 | MS.gene41173:CDS |
| TGAATTACATCTACCGAATG+TGG | 0.602951 | 4.1:-36563286 | None:intergenic |
| ATTTGAAAAGAAGAATTGGA+GGG | 0.607233 | 4.1:+36562642 | MS.gene41173:CDS |
| ACGATTCTTCTAGGCTTGGG+AGG | 0.614811 | 4.1:+36563514 | MS.gene41173:CDS |
| TTACATCTACCGAATGTGGT+TGG | 0.615754 | 4.1:-36563282 | None:intergenic |
| GGAAGAAGGAAATCTTCTCA+AGG | 0.620593 | 4.1:+36563155 | MS.gene41173:CDS |
| TGGAACCTAGTAGGGAGGTG+TGG | 0.635291 | 4.1:+36563448 | MS.gene41173:CDS |
| TGGACCAGAAAGTGTAGCAG+AGG | 0.637626 | 4.1:+36562708 | MS.gene41173:CDS |
| CAATGTAGAAGGTTATCAAG+AGG | 0.650694 | 4.1:+36563189 | MS.gene41173:CDS |
| AAATATGGAACCTAGTAGGG+AGG | 0.663757 | 4.1:+36563443 | MS.gene41173:CDS |
| CTAGAGATGGAATACTACAA+GGG | 0.670524 | 4.1:+36563607 | MS.gene41173:CDS |
| TCTTTGAAGAATGATAGAAG+AGG | 0.674445 | 4.1:+36562263 | MS.gene41173:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTGTAAAAAAAATA+AGG | - | chr4.1:36562814-36562833 | None:intergenic | 10.0% |
| !! | AATTGTTTACCTAAAAAATT+TGG | + | chr4.1:36563013-36563032 | MS.gene41173:intron | 15.0% |
| !!! | TTTTTAGGTAAACAATTTTT+TGG | - | chr4.1:36563010-36563029 | None:intergenic | 15.0% |
| !! | ATATACAAAGATGATGATAT+AGG | + | chr4.1:36563378-36563397 | MS.gene41173:CDS | 20.0% |
| !! | ATTTCTGTTGTTGAATTAAA+GGG | - | chr4.1:36563561-36563580 | None:intergenic | 20.0% |
| !! | CTAAATTTGAAAAGAAGAAT+TGG | + | chr4.1:36562638-36562657 | MS.gene41173:CDS | 20.0% |
| !! | TTATAGAGATTCTACATAAA+AGG | + | chr4.1:36562373-36562392 | MS.gene41173:CDS | 20.0% |
| !!! | ATCAAGTTCTAAAGAAAATA+TGG | + | chr4.1:36563428-36563447 | MS.gene41173:CDS | 20.0% |
| !!! | ATTCAATGACCAAATTTTTT+AGG | - | chr4.1:36563025-36563044 | None:intergenic | 20.0% |
| !!! | GATACAATTCTAAAATAGAT+TGG | + | chr4.1:36562615-36562634 | MS.gene41173:intron | 20.0% |
| !!! | GTTTTTTGAATTCATAGAAA+GGG | - | chr4.1:36562034-36562053 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGAATTCATAGAA+AGG | - | chr4.1:36562035-36562054 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATTCATAGAAAG+GGG | - | chr4.1:36562033-36562052 | None:intergenic | 20.0% |
| ! | AAGATATTATGACAATTTGC+AGG | + | chr4.1:36563079-36563098 | MS.gene41173:intron | 25.0% |
| ! | AATTTGAAAAGAAGAATTGG+AGG | + | chr4.1:36562641-36562660 | MS.gene41173:CDS | 25.0% |
| ! | ATCATCATCTTTGTATATCA+TGG | - | chr4.1:36563376-36563395 | None:intergenic | 25.0% |
| ! | ATGCTAAGTAAACAAAATGA+GGG | - | chr4.1:36562411-36562430 | None:intergenic | 25.0% |
| ! | ATTTGAAAAGAAGAATTGGA+GGG | + | chr4.1:36562642-36562661 | MS.gene41173:CDS | 25.0% |
| ! | CATTTCTGTTGTTGAATTAA+AGG | - | chr4.1:36563562-36563581 | None:intergenic | 25.0% |
| ! | TGTTACTAAATGAATCATGA+TGG | + | chr4.1:36562582-36562601 | MS.gene41173:intron | 25.0% |
| ! | TTCCAATATATTGATCAGAA+CGG | + | chr4.1:36562772-36562791 | MS.gene41173:CDS | 25.0% |
| ! | TTTCTGTTGTTGAATTAAAG+GGG | - | chr4.1:36563560-36563579 | None:intergenic | 25.0% |
| !! | TATCGAAAACAATTTTGTCA+TGG | + | chr4.1:36562512-36562531 | MS.gene41173:intron | 25.0% |
| AAGAAAATATGGAACCTAGT+AGG | + | chr4.1:36563439-36563458 | MS.gene41173:CDS | 30.0% | |
| AAGAAAGAAACCAATGTAGA+AGG | + | chr4.1:36563178-36563197 | MS.gene41173:CDS | 30.0% | |
| AATTCATCTTTCTCAACCTT+GGG | + | chr4.1:36563339-36563358 | MS.gene41173:CDS | 30.0% | |
| AGAAAATATGGAACCTAGTA+GGG | + | chr4.1:36563440-36563459 | MS.gene41173:CDS | 30.0% | |
| AGAGAGAGTAATGAAACTAT+TGG | + | chr4.1:36563134-36563153 | MS.gene41173:CDS | 30.0% | |
| ATATCCAAAACTATAGCTCT+AGG | + | chr4.1:36562212-36562231 | MS.gene41173:intron | 30.0% | |
| CATGCTAAGTAAACAAAATG+AGG | - | chr4.1:36562412-36562431 | None:intergenic | 30.0% | |
| GCAATCAAATTCGATATATG+TGG | + | chr4.1:36562476-36562495 | MS.gene41173:intron | 30.0% | |
| GTAATGAAACTATTGGAAGA+AGG | + | chr4.1:36563141-36563160 | MS.gene41173:CDS | 30.0% | |
| GTGATTAATGTGTTTCGATT+AGG | + | chr4.1:36562859-36562878 | MS.gene41173:intron | 30.0% | |
| TAATTCATCTTTCTCAACCT+TGG | + | chr4.1:36563338-36563357 | MS.gene41173:CDS | 30.0% | |
| TAGTAACAAAGAAGTGATCA+CGG | - | chr4.1:36562570-36562589 | None:intergenic | 30.0% | |
| TCCAATATATTGATCAGAAC+GGG | + | chr4.1:36562773-36562792 | MS.gene41173:CDS | 30.0% | |
| TGCTAAGTAAACAAAATGAG+GGG | - | chr4.1:36562410-36562429 | None:intergenic | 30.0% | |
| ! | AAATCCTAGAGCTATAGTTT+TGG | - | chr4.1:36562219-36562238 | None:intergenic | 30.0% |
| ! | CTTTTGAGCTAGATGATTAT+AGG | + | chr4.1:36562346-36562365 | MS.gene41173:CDS | 30.0% |
| ! | GCAATTTAAAACCTTGGAAA+TGG | - | chr4.1:36562439-36562458 | None:intergenic | 30.0% |
| ! | TCTTTGAAGAATGATAGAAG+AGG | + | chr4.1:36562263-36562282 | MS.gene41173:intron | 30.0% |
| AAATCATTGCCAACCACATT+CGG | + | chr4.1:36563273-36563292 | MS.gene41173:CDS | 35.0% | |
| AACCCTCAGATCAATTTCAA+AGG | + | chr4.1:36562320-36562339 | MS.gene41173:CDS | 35.0% | |
| ACAATTTGCAGGTTCAATTG+GGG | + | chr4.1:36563090-36563109 | MS.gene41173:intron | 35.0% | |
| ACCCGTTCTGATCAATATAT+TGG | - | chr4.1:36562777-36562796 | None:intergenic | 35.0% | |
| ATGATAGAAGAGGCAACTAA+TGG | + | chr4.1:36562273-36562292 | MS.gene41173:CDS | 35.0% | |
| CAATGTAGAAGGTTATCAAG+AGG | + | chr4.1:36563189-36563208 | MS.gene41173:CDS | 35.0% | |
| CACAATCAAGGAATTGTAAG+AGG | - | chr4.1:36562668-36562687 | None:intergenic | 35.0% | |
| CTAGAGATGGAATACTACAA+GGG | + | chr4.1:36563607-36563626 | MS.gene41173:CDS | 35.0% | |
| CTGATTTCTTTCTCACAGTT+AGG | - | chr4.1:36563116-36563135 | None:intergenic | 35.0% | |
| GACAATTTGCAGGTTCAATT+GGG | + | chr4.1:36563089-36563108 | MS.gene41173:intron | 35.0% | |
| GCTAAGTAAACAAAATGAGG+GGG | - | chr4.1:36562409-36562428 | None:intergenic | 35.0% | |
| TATATTGGAAACCTTTCAGC+TGG | - | chr4.1:36562762-36562781 | None:intergenic | 35.0% | |
| TGAATTACATCTACCGAATG+TGG | - | chr4.1:36563289-36563308 | None:intergenic | 35.0% | |
| TGACAATTTGCAGGTTCAAT+TGG | + | chr4.1:36563088-36563107 | MS.gene41173:intron | 35.0% | |
| TTGAGCTAGATGATTATAGG+AGG | + | chr4.1:36562349-36562368 | MS.gene41173:CDS | 35.0% | |
| ! | CAGTCTTGATTTTCTCTTTG+AGG | - | chr4.1:36562070-36562089 | None:intergenic | 35.0% |
| ! | CATGGTTTTCATATTACCCA+AGG | - | chr4.1:36563358-36563377 | None:intergenic | 35.0% |
| ! | CTCTTGATAACCTTCTACAT+TGG | - | chr4.1:36563191-36563210 | None:intergenic | 35.0% |
| ! | GTGATCACGGTTTTTAATGA+AGG | - | chr4.1:36562557-36562576 | None:intergenic | 35.0% |
| !! | AGCCTTTGAAATTGATCTGA+GGG | - | chr4.1:36562325-36562344 | None:intergenic | 35.0% |
| !! | AGGTTATCAAGAGGTATTCA+AGG | + | chr4.1:36563198-36563217 | MS.gene41173:CDS | 35.0% |
| !! | TCAAGAGGTATTCAAGGTTT+CGG | + | chr4.1:36563204-36563223 | MS.gene41173:CDS | 35.0% |
| !! | TCAGAATCACTTTTGGATTG+CGG | + | chr4.1:36563486-36563505 | MS.gene41173:CDS | 35.0% |
| AAATATGGAACCTAGTAGGG+AGG | + | chr4.1:36563443-36563462 | MS.gene41173:CDS | 40.0% | |
| AAGACGATTCTTCTAGGCTT+GGG | + | chr4.1:36563511-36563530 | MS.gene41173:CDS | 40.0% | |
| AATTCCTCTGCTACACTTTC+TGG | - | chr4.1:36562715-36562734 | None:intergenic | 40.0% | |
| AGGCAACTAATGGAAATCCA+TGG | + | chr4.1:36562283-36562302 | MS.gene41173:CDS | 40.0% | |
| CAAATGCTCAAGCACAATCA+AGG | - | chr4.1:36562680-36562699 | None:intergenic | 40.0% | |
| CAATGATTTCTCGCGAAGAA+TGG | - | chr4.1:36563262-36563281 | None:intergenic | 40.0% | |
| CTCAAACAACTACGAAGATC+AGG | + | chr4.1:36563311-36563330 | MS.gene41173:CDS | 40.0% | |
| GATGTTATTGACCAGCTGAA+AGG | + | chr4.1:36562748-36562767 | MS.gene41173:CDS | 40.0% | |
| GCTAGAGATGGAATACTACA+AGG | + | chr4.1:36563606-36563625 | MS.gene41173:CDS | 40.0% | |
| GGAAGAAGGAAATCTTCTCA+AGG | + | chr4.1:36563155-36563174 | MS.gene41173:CDS | 40.0% | |
| GGCAACTAATGGAAATCCAT+GGG | + | chr4.1:36562284-36562303 | MS.gene41173:CDS | 40.0% | |
| GTGAAAAGGACCTGATAATC+TGG | - | chr4.1:36562967-36562986 | None:intergenic | 40.0% | |
| TAGCATGTTCACCATTTCCA+AGG | + | chr4.1:36562425-36562444 | MS.gene41173:intron | 40.0% | |
| TTACATCTACCGAATGTGGT+TGG | - | chr4.1:36563285-36563304 | None:intergenic | 40.0% | |
| ! | AGGTCCTTTTCACCTAGTAA+AGG | + | chr4.1:36562974-36562993 | MS.gene41173:intron | 40.0% |
| ! | CCTTTTCACCTAGTAAAGGA+GGG | + | chr4.1:36562978-36562997 | MS.gene41173:intron | 40.0% |
| ! | GCGATCGCAATTTAAAACCT+TGG | - | chr4.1:36562445-36562464 | None:intergenic | 40.0% |
| ! | TCCTTTTCACCTAGTAAAGG+AGG | + | chr4.1:36562977-36562996 | MS.gene41173:intron | 40.0% |
| ! | TGGAGAGTCAGAATCACTTT+TGG | + | chr4.1:36563479-36563498 | MS.gene41173:CDS | 40.0% |
| !! | CAGCCTTTGAAATTGATCTG+AGG | - | chr4.1:36562326-36562345 | None:intergenic | 40.0% |
| !! | CTTGAGCATTTGTTGACTCA+TGG | + | chr4.1:36562688-36562707 | MS.gene41173:CDS | 40.0% |
| !! | GGTTTTAACCCTCCTTTACT+AGG | - | chr4.1:36562989-36563008 | None:intergenic | 40.0% |
| CCCTCCTTTACTAGGTGAAA+AGG | - | chr4.1:36562981-36563000 | None:intergenic | 45.0% | |
| CGACCAAACTCCAGATTATC+AGG | + | chr4.1:36562954-36562973 | MS.gene41173:intron | 45.0% | |
| CTTGCAGCACAAGTATCAAC+TGG | - | chr4.1:36563053-36563072 | None:intergenic | 45.0% | |
| GAAGACGATTCTTCTAGGCT+TGG | + | chr4.1:36563510-36563529 | MS.gene41173:CDS | 45.0% | |
| GATCTGAGGGTTACAGTAGT+TGG | - | chr4.1:36562312-36562331 | None:intergenic | 45.0% | |
| TAACAAGCTCACAGTTCTGC+AGG | - | chr4.1:36562119-36562138 | None:intergenic | 45.0% | |
| TCCATCTCTAGCAGAAAGCA+AGG | - | chr4.1:36563598-36563617 | None:intergenic | 45.0% | |
| TCCTTGCTTTCTGCTAGAGA+TGG | + | chr4.1:36563594-36563613 | MS.gene41173:CDS | 45.0% | |
| ! | GGACCTGATAATCTGGAGTT+TGG | - | chr4.1:36562960-36562979 | None:intergenic | 45.0% |
| AAGTTCCACACCTCCCTACT+AGG | - | chr4.1:36563456-36563475 | None:intergenic | 50.0% | |
| ACGATTCTTCTAGGCTTGGG+AGG | + | chr4.1:36563514-36563533 | MS.gene41173:CDS | 50.0% | |
| GCGGAGAAGACGATTCTTCT+AGG | + | chr4.1:36563505-36563524 | MS.gene41173:CDS | 50.0% | |
| ! | GTTACAGTAGTTGGTGCCCA+TGG | - | chr4.1:36562303-36562322 | None:intergenic | 50.0% |
| ! | TAGTAGGGAGGTGTGGAACT+TGG | + | chr4.1:36563455-36563474 | MS.gene41173:CDS | 50.0% |
| ! | TCGCGAAGAATGGCTTGTGT+TGG | - | chr4.1:36563252-36563271 | None:intergenic | 50.0% |
| ! | TGGACCAGAAAGTGTAGCAG+AGG | + | chr4.1:36562708-36562727 | MS.gene41173:CDS | 50.0% |
| AAGGTCTGCGAGCGCAATCT+AGG | - | chr4.1:36562538-36562557 | None:intergenic | 55.0% | |
| TGGAACCTAGTAGGGAGGTG+TGG | + | chr4.1:36563448-36563467 | MS.gene41173:CDS | 55.0% | |
| ! | AGGGAGGTGTGGAACTTGGA+TGG | + | chr4.1:36563459-36563478 | MS.gene41173:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 36562023 | 36563635 | 36562023 | ID=MS.gene41173 |
| chr4.1 | mRNA | 36562023 | 36563635 | 36562023 | ID=MS.gene41173.t1;Parent=MS.gene41173 |
| chr4.1 | exon | 36562023 | 36562126 | 36562023 | ID=MS.gene41173.t1.exon1;Parent=MS.gene41173.t1 |
| chr4.1 | CDS | 36562023 | 36562126 | 36562023 | ID=cds.MS.gene41173.t1;Parent=MS.gene41173.t1 |
| chr4.1 | exon | 36562272 | 36562394 | 36562272 | ID=MS.gene41173.t1.exon2;Parent=MS.gene41173.t1 |
| chr4.1 | CDS | 36562272 | 36562394 | 36562272 | ID=cds.MS.gene41173.t1;Parent=MS.gene41173.t1 |
| chr4.1 | exon | 36562633 | 36562794 | 36562633 | ID=MS.gene41173.t1.exon3;Parent=MS.gene41173.t1 |
| chr4.1 | CDS | 36562633 | 36562794 | 36562633 | ID=cds.MS.gene41173.t1;Parent=MS.gene41173.t1 |
| chr4.1 | exon | 36563101 | 36563635 | 36563101 | ID=MS.gene41173.t1.exon4;Parent=MS.gene41173.t1 |
| chr4.1 | CDS | 36563101 | 36563635 | 36563101 | ID=cds.MS.gene41173.t1;Parent=MS.gene41173.t1 |
| Gene Sequence |
| Protein sequence |
