Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42057.t1 | XP_003619136.1 | 98 | 150 | 3 | 0 | 1 | 150 | 1 | 150 | 3.40E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42057.t1 | Q8RWG8 | 73.8 | 145 | 38 | 0 | 6 | 150 | 11 | 155 | 6.4e-61 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42057.t1 | G7KIE5 | 98.0 | 150 | 3 | 0 | 1 | 150 | 1 | 150 | 2.4e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene42057 | 0.810852 | 9.38E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene42057 | 0.827268 | 1.72E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene42057 | 0.842939 | 1.90E-58 | -1.69E-46 |
| MS.gene050277 | MS.gene42057 | 0.800046 | 1.73E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene42057 | 0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene42057 | 0.833624 | 4.79E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene42057 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene42057 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene051597 | MS.gene42057 | 0.841914 | 3.56E-58 | -1.69E-46 |
| MS.gene05188 | MS.gene42057 | 0.834811 | 2.42E-56 | -1.69E-46 |
| MS.gene051902 | MS.gene42057 | 0.802697 | 4.96E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene42057 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene42057 | 0.833272 | 5.87E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene42057 | 0.828293 | 9.74E-55 | -1.69E-46 |
| MS.gene053294 | MS.gene42057 | 0.806411 | 8.34E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene42057 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene42057 | 0.833555 | 4.99E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene42057 | 0.826134 | 3.20E-54 | -1.69E-46 |
| MS.gene054413 | MS.gene42057 | 0.823408 | 1.41E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene42057 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene42057 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene05548 | MS.gene42057 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene42057 | 0.821448 | 4.02E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene42057 | 0.820422 | 6.92E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene42057 | 0.8164 | 5.64E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene42057 | 0.826497 | 2.63E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene42057 | 0.839861 | 1.23E-57 | -1.69E-46 |
| MS.gene05689 | MS.gene42057 | 0.860236 | 2.38E-63 | -1.69E-46 |
| MS.gene056986 | MS.gene42057 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene057079 | MS.gene42057 | 0.805305 | 1.42E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene42057 | 0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene42057 | 0.854984 | 8.55E-62 | -1.69E-46 |
| MS.gene057893 | MS.gene42057 | -0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene42057 | 0.833207 | 6.09E-56 | -1.69E-46 |
| MS.gene058498 | MS.gene42057 | 0.800134 | 1.66E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene42057 | 0.861956 | 7.12E-64 | -1.69E-46 |
| MS.gene05953 | MS.gene42057 | 0.809592 | 1.75E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene42057 | 0.807408 | 5.13E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene42057 | -0.81815 | 2.28E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene42057 | -0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene059935 | MS.gene42057 | 0.836989 | 6.77E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene42057 | 0.816238 | 6.13E-52 | -1.69E-46 |
| MS.gene06018 | MS.gene42057 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene42057 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene42057 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene42057 | 0.834558 | 2.80E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene42057 | 0.826907 | 2.10E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene42057 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene42057 | 0.812175 | 4.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42057.t1 | MTR_6g042530 | 93.750 | 224 | 10 | 1 | 1 | 224 | 1 | 220 | 2.60e-135 | 379 |
| MS.gene42057.t1 | MTR_1g097600 | 74.661 | 221 | 50 | 3 | 6 | 224 | 5 | 221 | 1.07e-111 | 319 |
| MS.gene42057.t1 | MTR_1g097600 | 81.633 | 147 | 26 | 1 | 6 | 151 | 5 | 151 | 1.89e-88 | 258 |
| MS.gene42057.t1 | MTR_3g034085 | 81.538 | 130 | 23 | 1 | 6 | 134 | 5 | 134 | 6.05e-77 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42057.t1 | AT2G30060 | 67.488 | 203 | 63 | 3 | 6 | 206 | 11 | 212 | 2.87e-91 | 267 |
| MS.gene42057.t1 | AT5G58590 | 72.093 | 172 | 47 | 1 | 8 | 178 | 10 | 181 | 1.72e-89 | 263 |
| MS.gene42057.t1 | AT1G07140 | 71.676 | 173 | 48 | 1 | 6 | 177 | 9 | 181 | 1.01e-87 | 259 |
Find 43 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTTTCCTCTTTATTC+AGG | 0.146603 | 6.4:+16228813 | None:intergenic |
| CTTCAACGCTCAAATTCTTA+AGG | 0.306134 | 6.4:+16228768 | None:intergenic |
| CGCTCCGATCATTCAACTTC+AGG | 0.321264 | 6.4:-16231148 | MS.gene42057:CDS |
| CTTGCTTTCCTCTTTATTCA+GGG | 0.373773 | 6.4:+16228814 | None:intergenic |
| GATGATTGGCACAGATCTTA+AGG | 0.374977 | 6.4:+16230426 | None:intergenic |
| CTTAAGAATTTGAGCGTTGA+AGG | 0.385239 | 6.4:-16228767 | MS.gene42057:CDS |
| GATTCCCTTCCTTGTCAAAT+CGG | 0.395157 | 6.4:+16230537 | None:intergenic |
| ATAAGGTTACCGGAAAAGTT+AGG | 0.420424 | 6.4:-16230472 | MS.gene42057:CDS |
| GGAATGAGAAATCTTGTGTT+TGG | 0.452376 | 6.4:-16229975 | MS.gene42057:CDS |
| TGCTGAATCCCTGAATAAAG+AGG | 0.481374 | 6.4:-16228822 | MS.gene42057:CDS |
| TCAATACTCACTGAGATGAT+TGG | 0.489367 | 6.4:+16230412 | None:intergenic |
| CAGGAAGTCGCTGTTTCCAC+TGG | 0.489504 | 6.4:-16231129 | MS.gene42057:CDS |
| TTGACAAGGAAGGGAATCAA+TGG | 0.490090 | 6.4:-16230532 | MS.gene42057:CDS |
| ATCTTCCTCTTCGTGATGAT+CGG | 0.492706 | 6.4:+16231209 | None:intergenic |
| GCCGGTGTCTTCTTCATCGC+CGG | 0.504644 | 6.4:+16231179 | None:intergenic |
| ATGATTGGCACAGATCTTAA+GGG | 0.508217 | 6.4:+16230427 | None:intergenic |
| GAAAACCGAGGAGAAAACTA+AGG | 0.512105 | 6.4:-16228702 | MS.gene42057:CDS |
| CAATGGAAAGAACGAGGGGC+AGG | 0.514551 | 6.4:-16230515 | MS.gene42057:CDS |
| ATGACTGTGCAAGAGCATGC+TGG | 0.525554 | 6.4:-16229997 | MS.gene42057:CDS |
| GTGTCTTCTTCATCGCCGGC+GGG | 0.532371 | 6.4:+16231183 | None:intergenic |
| GAAAAGAAAGTCGAAGAGCC+TGG | 0.535131 | 6.4:-16228641 | MS.gene42057:CDS |
| TTCTTCATCTTCTTCACCAG+TGG | 0.541787 | 6.4:+16231113 | None:intergenic |
| TTAAGAATTTGAGCGTTGAA+GGG | 0.557314 | 6.4:-16228766 | MS.gene42057:CDS |
| ATCTTGTGTTTGGCACGCGA+AGG | 0.558670 | 6.4:-16229965 | MS.gene42057:CDS |
| CTGTACCGATTTGACAAGGA+AGG | 0.562348 | 6.4:-16230542 | MS.gene42057:CDS |
| CACGCGAAGGACTTCGCTGA+TGG | 0.562359 | 6.4:-16229952 | MS.gene42057:CDS |
| GGTGTCTTCTTCATCGCCGG+CGG | 0.563701 | 6.4:+16231182 | None:intergenic |
| TGACTGTGCAAGAGCATGCT+GGG | 0.564943 | 6.4:-16229996 | MS.gene42057:CDS |
| CATAATCAAGCAGATGAACC+AGG | 0.570119 | 6.4:+16228623 | None:intergenic |
| ACTTCCTGAAGTTGAATGAT+CGG | 0.576817 | 6.4:+16231144 | None:intergenic |
| GATCGGAGCGATTTGAGCGC+CGG | 0.577295 | 6.4:+16231161 | None:intergenic |
| CCTGAATAAAGAGGAAAGCA+AGG | 0.588948 | 6.4:-16228813 | MS.gene42057:CDS |
| CTTAAGGAGATCAGCAGCAG+TGG | 0.591678 | 6.4:+16228784 | None:intergenic |
| GAAAGACGAAGAGAAATCTG+AGG | 0.628935 | 6.4:-16228726 | MS.gene42057:CDS |
| TGTACCGATTTGACAAGGAA+GGG | 0.657438 | 6.4:-16230541 | MS.gene42057:CDS |
| GGAATCAATGGAAAGAACGA+GGG | 0.657543 | 6.4:-16230520 | MS.gene42057:CDS |
| GAAGAGGAAGATGTTCCCGC+CGG | 0.668991 | 6.4:-16231198 | MS.gene42057:CDS |
| AAGCACCGATCATCACGAAG+AGG | 0.672214 | 6.4:-16231214 | MS.gene42057:CDS |
| GGGAATCAATGGAAAGAACG+AGG | 0.682990 | 6.4:-16230521 | MS.gene42057:CDS |
| GAATCAATGGAAAGAACGAG+GGG | 0.684221 | 6.4:-16230519 | MS.gene42057:CDS |
| GAAACTGTACCGATTTGACA+AGG | 0.698764 | 6.4:-16230546 | MS.gene42057:CDS |
| GAAATCTGAGGAGAAAACCG+AGG | 0.701527 | 6.4:-16228714 | MS.gene42057:CDS |
| GCCGGCGATGAAGAAGACAC+CGG | 0.712296 | 6.4:-16231180 | MS.gene42057:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTAGTTTTTGAT+TGG | - | chr6.4:16229776-16229795 | MS.gene42057:intron | 10.0% |
| !! | AATGAATTAAATCATTATAC+GGG | + | chr6.4:16230850-16230869 | None:intergenic | 15.0% |
| !! | ATAAGTTGTTTATTCAAATA+AGG | - | chr6.4:16230270-16230289 | MS.gene42057:intron | 15.0% |
| !! | ATAGGTTATACATAAATATT+TGG | - | chr6.4:16230177-16230196 | MS.gene42057:intron | 15.0% |
| !! | CAATGAATTAAATCATTATA+CGG | + | chr6.4:16230851-16230870 | None:intergenic | 15.0% |
| !! | CATAAAAAAATCACAAAAAA+CGG | + | chr6.4:16229065-16229084 | None:intergenic | 15.0% |
| !! | TGAATAAAAGAAAAAGAAAA+AGG | + | chr6.4:16229988-16230007 | None:intergenic | 15.0% |
| !! | TTATTTGAATAAACAACTTA+TGG | + | chr6.4:16230271-16230290 | None:intergenic | 15.0% |
| !! | AATTACAACAACAAAAAAAG+TGG | + | chr6.4:16228800-16228819 | None:intergenic | 20.0% |
| !! | CTGATTAATCTAAGTTAAAT+TGG | - | chr6.4:16230336-16230355 | MS.gene42057:intron | 20.0% |
| !! | CTTCTAATTAAAGATGTTTA+TGG | + | chr6.4:16229741-16229760 | None:intergenic | 20.0% |
| !! | TTGATTGTAAAATAACTTGA+TGG | - | chr6.4:16230412-16230431 | MS.gene42057:intron | 20.0% |
| !!! | ATTTTACAATCAAACTTAAG+AGG | + | chr6.4:16230405-16230424 | None:intergenic | 20.0% |
| !!! | CAATGTTTTTTTGTGATTTT+GGG | - | chr6.4:16229116-16229135 | MS.gene42057:intron | 20.0% |
| !!! | TTTATTTTTATAAACACTCC+AGG | - | chr6.4:16230133-16230152 | MS.gene42057:intron | 20.0% |
| ! | ACACAAAAATCACTAAAACA+TGG | + | chr6.4:16229254-16229273 | None:intergenic | 25.0% |
| ! | ATATGCCATAAATTTACACT+CGG | + | chr6.4:16230946-16230965 | None:intergenic | 25.0% |
| ! | CAAGATCAATAAACAATCAA+AGG | + | chr6.4:16229568-16229587 | None:intergenic | 25.0% |
| ! | TTAAAGATGTTTATGGTATC+CGG | + | chr6.4:16229734-16229753 | None:intergenic | 25.0% |
| !! | ATAATTTGTACATGATCGTA+TGG | + | chr6.4:16230514-16230533 | None:intergenic | 25.0% |
| !! | CTAATTTTGTAAGGTAGATT+AGG | + | chr6.4:16230664-16230683 | None:intergenic | 25.0% |
| !! | TTAACTAGTATTTTGTGGAT+GGG | - | chr6.4:16230770-16230789 | MS.gene42057:intron | 25.0% |
| !!! | ACATATTCACTAGTTGTTTT+CGG | - | chr6.4:16230110-16230129 | MS.gene42057:intron | 25.0% |
| !!! | GATGTTTTTGTTGTGAATTT+TGG | - | chr6.4:16228862-16228881 | MS.gene42057:intron | 25.0% |
| !!! | GATTTTTATTTGACATTCCT+TGG | - | chr6.4:16230306-16230325 | MS.gene42057:intron | 25.0% |
| !!! | GCAATGTTTTTTTGTGATTT+TGG | - | chr6.4:16229115-16229134 | MS.gene42057:intron | 25.0% |
| !!! | GTGATTTTTGTTGTGAATTT+TGG | - | chr6.4:16228925-16228944 | MS.gene42057:intron | 25.0% |
| !!! | GTTTTTTAAATGTTTGTCCT+TGG | - | chr6.4:16230691-16230710 | MS.gene42057:intron | 25.0% |
| !!! | TAGTTTTTGATTGGTTTTGA+CGG | - | chr6.4:16229785-16229804 | MS.gene42057:intron | 25.0% |
| !!! | TGTGATTTTGTTGTGAATAT+TGG | - | chr6.4:16228894-16228913 | MS.gene42057:intron | 25.0% |
| !!! | TGTGATTTTGTTGTGAATTT+TGG | - | chr6.4:16228990-16229009 | MS.gene42057:intron | 25.0% |
| !!! | TGTGTTTGATTGTTTTGTTT+TGG | - | chr6.4:16229815-16229834 | MS.gene42057:intron | 25.0% |
| !!! | TTGCAATGTTTTTGTGATTT+TGG | - | chr6.4:16229154-16229173 | MS.gene42057:intron | 25.0% |
| AAGTTTGAATTCCATACCAT+AGG | + | chr6.4:16230468-16230487 | None:intergenic | 30.0% | |
| AATTGCCGAGTGTAAATTTA+TGG | - | chr6.4:16230938-16230957 | MS.gene42057:intron | 30.0% | |
| ACCTTACAAAATTAGTGTAC+AGG | - | chr6.4:16230669-16230688 | MS.gene42057:intron | 30.0% | |
| AGAACAATATAAGCCTGAAA+AGG | + | chr6.4:16230907-16230926 | None:intergenic | 30.0% | |
| ATACCATAGGATCAAGTAAA+AGG | + | chr6.4:16230455-16230474 | None:intergenic | 30.0% | |
| ATTTACACTCGGCAATTAAT+AGG | + | chr6.4:16230935-16230954 | None:intergenic | 30.0% | |
| GTGCTGTATTAGTATTTGTT+AGG | - | chr6.4:16230377-16230396 | MS.gene42057:intron | 30.0% | |
| GTTCGTGAAAACAACTTAAT+AGG | - | chr6.4:16230159-16230178 | MS.gene42057:intron | 30.0% | |
| TAAAGATGTTTATGGTATCC+GGG | + | chr6.4:16229733-16229752 | None:intergenic | 30.0% | |
| TCTATGAATCATTGACACAT+CGG | - | chr6.4:16229468-16229487 | MS.gene42057:intron | 30.0% | |
| TTGTAAACTATGTTCAGACT+TGG | - | chr6.4:16230019-16230038 | MS.gene42057:intron | 30.0% | |
| ! | ACCTGTACACTAATTTTGTA+AGG | + | chr6.4:16230673-16230692 | None:intergenic | 30.0% |
| ! | GTTAACTAGTATTTTGTGGA+TGG | - | chr6.4:16230769-16230788 | MS.gene42057:intron | 30.0% |
| ! | TCATTTTCTCAAATTACCAC+TGG | + | chr6.4:16229642-16229661 | None:intergenic | 30.0% |
| ! | TTGGTAGTAATTTGAGCAAA+TGG | - | chr6.4:16229493-16229512 | MS.gene42057:intron | 30.0% |
| ! | TTTTACTTGATCCTATGGTA+TGG | - | chr6.4:16230454-16230473 | MS.gene42057:CDS | 30.0% |
| !! | GGAAAAGCATTGTAAAGAAA+AGG | + | chr6.4:16230731-16230750 | None:intergenic | 30.0% |
| !! | TTAAGAATTTGAGCGTTGAA+GGG | - | chr6.4:16231084-16231103 | MS.gene42057:intron | 30.0% |
| !!! | TGTGAAGTTTTTGAAGCATA+AGG | - | chr6.4:16229361-16229380 | MS.gene42057:intron | 30.0% |
| !!! | TTTTTGAAGCATAAGGTTAC+CGG | - | chr6.4:16229368-16229387 | MS.gene42057:intron | 30.0% |
| AACAATCAAAGGTGAGAATC+CGG | + | chr6.4:16229557-16229576 | None:intergenic | 35.0% | |
| AATTGAGTGTAAACACGTGT+CGG | - | chr6.4:16229665-16229684 | MS.gene42057:intron | 35.0% | |
| ACACCAGAAAAAGAAAGCAA+GGG | - | chr6.4:16231179-16231198 | MS.gene42057:CDS | 35.0% | |
| ACTTCCTGAAGTTGAATGAT+CGG | + | chr6.4:16228709-16228728 | None:intergenic | 35.0% | |
| ATAAGGTTACCGGAAAAGTT+AGG | - | chr6.4:16229378-16229397 | MS.gene42057:intron | 35.0% | |
| ATGATTGGCACAGATCTTAA+GGG | + | chr6.4:16229426-16229445 | None:intergenic | 35.0% | |
| ATTGATGTAAACACGTGTGT+CGG | - | chr6.4:16229520-16229539 | MS.gene42057:intron | 35.0% | |
| CTTCAACGCTCAAATTCTTA+AGG | + | chr6.4:16231085-16231104 | None:intergenic | 35.0% | |
| CTTGCTTTCCTCTTTATTCA+GGG | + | chr6.4:16231039-16231058 | None:intergenic | 35.0% | |
| GGAATGAGAAATCTTGTGTT+TGG | - | chr6.4:16229875-16229894 | MS.gene42057:intron | 35.0% | |
| GTAAGGTAGATTAGGATCAT+TGG | + | chr6.4:16230656-16230675 | None:intergenic | 35.0% | |
| GTGAAATGTTTGCAATCCAA+TGG | + | chr6.4:16230885-16230904 | None:intergenic | 35.0% | |
| TAAGTTTGTGACATTACCGA+AGG | - | chr6.4:16230582-16230601 | MS.gene42057:intron | 35.0% | |
| TCAATACTCACTGAGATGAT+TGG | + | chr6.4:16229441-16229460 | None:intergenic | 35.0% | |
| TTGGCTTAACTCACTGAATT+TGG | - | chr6.4:16230355-16230374 | MS.gene42057:intron | 35.0% | |
| ! | ATGCTTTTCCCTGCTTATAA+TGG | - | chr6.4:16230741-16230760 | MS.gene42057:intron | 35.0% |
| ! | CAGGGTTAACTAGTATTTTG+TGG | - | chr6.4:16230765-16230784 | MS.gene42057:intron | 35.0% |
| ! | CATAACAAGCCTAACTTTTC+CGG | + | chr6.4:16229390-16229409 | None:intergenic | 35.0% |
| ! | CTTCCTTTTACTTGATCCTA+TGG | - | chr6.4:16230449-16230468 | MS.gene42057:CDS | 35.0% |
| ! | TGCAAACATTTCACCTTTTC+AGG | - | chr6.4:16230891-16230910 | MS.gene42057:intron | 35.0% |
| ! | TGCTTTTCCCTGCTTATAAT+GGG | - | chr6.4:16230742-16230761 | MS.gene42057:intron | 35.0% |
| ! | TTTTACCTAACATGATCCTG+TGG | - | chr6.4:16230804-16230823 | MS.gene42057:intron | 35.0% |
| !! | CTTAAGAATTTGAGCGTTGA+AGG | - | chr6.4:16231083-16231102 | MS.gene42057:intron | 35.0% |
| !! | TTTCTCCTTAGTTTTCTCCT+CGG | + | chr6.4:16231156-16231175 | None:intergenic | 35.0% |
| AATCATTGACACATCGGCAT+TGG | - | chr6.4:16229474-16229493 | MS.gene42057:intron | 40.0% | |
| ACATCCAAACGTGAAGATGT+GGG | - | chr6.4:16230539-16230558 | MS.gene42057:CDS | 40.0% | |
| ATCTTCCTCTTCGTGATGAT+CGG | + | chr6.4:16228644-16228663 | None:intergenic | 40.0% | |
| CCTGAATAAAGAGGAAAGCA+AGG | - | chr6.4:16231037-16231056 | MS.gene42057:intron | 40.0% | |
| CCTTGCTTTCCTCTTTATTC+AGG | + | chr6.4:16231040-16231059 | None:intergenic | 40.0% | |
| GAAAACCGAGGAGAAAACTA+AGG | - | chr6.4:16231148-16231167 | MS.gene42057:CDS | 40.0% | |
| GAAAGACGAAGAGAAATCTG+AGG | - | chr6.4:16231124-16231143 | MS.gene42057:CDS | 40.0% | |
| GAATCAATGGAAAGAACGAG+GGG | - | chr6.4:16229331-16229350 | MS.gene42057:intron | 40.0% | |
| GACACCAGAAAAAGAAAGCA+AGG | - | chr6.4:16231178-16231197 | MS.gene42057:CDS | 40.0% | |
| GATGATTGGCACAGATCTTA+AGG | + | chr6.4:16229427-16229446 | None:intergenic | 40.0% | |
| GATTAATCAGTGCAACACCA+AGG | + | chr6.4:16230326-16230345 | None:intergenic | 40.0% | |
| GATTCCCTTCCTTGTCAAAT+CGG | + | chr6.4:16229316-16229335 | None:intergenic | 40.0% | |
| GGAATCAATGGAAAGAACGA+GGG | - | chr6.4:16229330-16229349 | MS.gene42057:intron | 40.0% | |
| TGCTGAATCCCTGAATAAAG+AGG | - | chr6.4:16231028-16231047 | MS.gene42057:intron | 40.0% | |
| TTCTTCATCTTCTTCACCAG+TGG | + | chr6.4:16228740-16228759 | None:intergenic | 40.0% | |
| TTGACAAGGAAGGGAATCAA+TGG | - | chr6.4:16229318-16229337 | MS.gene42057:intron | 40.0% | |
| ! | TCTCCCTTGCTTTCTTTTTC+TGG | + | chr6.4:16231185-16231204 | None:intergenic | 40.0% |
| !! | GAAACTGTACCGATTTGACA+AGG | - | chr6.4:16229304-16229323 | MS.gene42057:intron | 40.0% |
| !! | GTTCAGACTTGGTGCTTATT+TGG | - | chr6.4:16230030-16230049 | MS.gene42057:intron | 40.0% |
| !! | GTTGTTTTCACGAACTATCC+TGG | + | chr6.4:16230154-16230173 | None:intergenic | 40.0% |
| !! | TGCTCTTGCACAGTCATTTT+AGG | + | chr6.4:16229850-16229869 | None:intergenic | 40.0% |
| !! | TGTACCGATTTGACAAGGAA+GGG | - | chr6.4:16229309-16229328 | MS.gene42057:intron | 40.0% |
| AACCCTGCCCATTATAAGCA+GGG | + | chr6.4:16230752-16230771 | None:intergenic | 45.0% | |
| AAGTGCCACAGGATCATGTT+AGG | + | chr6.4:16230812-16230831 | None:intergenic | 45.0% | |
| ACGAACACCTGACACAACAA+TGG | - | chr6.4:16229600-16229619 | MS.gene42057:intron | 45.0% | |
| AGGTGCACATAATTCGACCA+AGG | + | chr6.4:16230711-16230730 | None:intergenic | 45.0% | |
| CACTGACATGTTAACACCAG+TGG | - | chr6.4:16229623-16229642 | MS.gene42057:intron | 45.0% | |
| CATTGCTGCTGTCTTTCCAT+TGG | - | chr6.4:16230866-16230885 | MS.gene42057:intron | 45.0% | |
| GAAAAGAAAGTCGAAGAGCC+TGG | - | chr6.4:16231209-16231228 | MS.gene42057:CDS | 45.0% | |
| GAAATCTGAGGAGAAAACCG+AGG | - | chr6.4:16231136-16231155 | MS.gene42057:CDS | 45.0% | |
| GACATCCAAACGTGAAGATG+TGG | - | chr6.4:16230538-16230557 | MS.gene42057:CDS | 45.0% | |
| GGGAATCAATGGAAAGAACG+AGG | - | chr6.4:16229329-16229348 | MS.gene42057:intron | 45.0% | |
| TAACCCTGCCCATTATAAGC+AGG | + | chr6.4:16230753-16230772 | None:intergenic | 45.0% | |
| ! | GAGAGAGAGAGAGAGTATAC+AGG | + | chr6.4:16228774-16228793 | None:intergenic | 45.0% |
| ! | TGTGTCGGTGTTCTAGATAC+CGG | - | chr6.4:16229535-16229554 | MS.gene42057:intron | 45.0% |
| !! | CTGTACCGATTTGACAAGGA+AGG | - | chr6.4:16229308-16229327 | MS.gene42057:intron | 45.0% |
| !! | TGTTACGTTAGAAGTGCCAC+AGG | + | chr6.4:16230823-16230842 | None:intergenic | 45.0% |
| !! | TTCCCTGCTTATAATGGGCA+GGG | - | chr6.4:16230747-16230766 | MS.gene42057:intron | 45.0% |
| !! | TTTCCCTGCTTATAATGGGC+AGG | - | chr6.4:16230746-16230765 | MS.gene42057:intron | 45.0% |
| ATCTTGTGTTTGGCACGCGA+AGG | - | chr6.4:16229885-16229904 | MS.gene42057:intron | 50.0% | |
| CGCTCCGATCATTCAACTTC+AGG | - | chr6.4:16228702-16228721 | MS.gene42057:CDS | 50.0% | |
| CTCACCCACATCTTCACGTT+TGG | + | chr6.4:16230546-16230565 | None:intergenic | 50.0% | |
| CTTAAGGAGATCAGCAGCAG+TGG | + | chr6.4:16231069-16231088 | None:intergenic | 50.0% | |
| CTTAGATGCCACCTGTGTGT+GGG | - | chr6.4:16230620-16230639 | MS.gene42057:intron | 50.0% | |
| GTCAGACGCTAACATGTGTC+AGG | - | chr6.4:16229700-16229719 | MS.gene42057:intron | 50.0% | |
| ! | ATGACTGTGCAAGAGCATGC+TGG | - | chr6.4:16229853-16229872 | MS.gene42057:intron | 50.0% |
| ! | GTCAGTGCCATTGTTGTGTC+AGG | + | chr6.4:16229610-16229629 | None:intergenic | 50.0% |
| ! | TGACTGTGCAAGAGCATGCT+GGG | - | chr6.4:16229854-16229873 | MS.gene42057:intron | 50.0% |
| !! | AAGCACCGATCATCACGAAG+AGG | - | chr6.4:16228636-16228655 | MS.gene42057:CDS | 50.0% |
| ACCGAAGGCTGTTGTGCATG+CGG | - | chr6.4:16230597-16230616 | MS.gene42057:intron | 55.0% | |
| CAATGGAAAGAACGAGGGGC+AGG | - | chr6.4:16229335-16229354 | MS.gene42057:intron | 55.0% | |
| CATGTGTCAGGCACAAGACC+CGG | - | chr6.4:16229712-16229731 | MS.gene42057:intron | 55.0% | |
| GAAGAGGAAGATGTTCCCGC+CGG | - | chr6.4:16228652-16228671 | MS.gene42057:CDS | 55.0% | |
| GCTTAGATGCCACCTGTGTG+TGG | - | chr6.4:16230619-16230638 | MS.gene42057:intron | 55.0% | |
| ! | CAGGAAGTCGCTGTTTCCAC+TGG | - | chr6.4:16228721-16228740 | MS.gene42057:CDS | 55.0% |
| CACGCGAAGGACTTCGCTGA+TGG | - | chr6.4:16229898-16229917 | MS.gene42057:intron | 60.0% | |
| CCACCTGTGTGTGGGCACAA+TGG | - | chr6.4:16230628-16230647 | MS.gene42057:intron | 60.0% | |
| CCATTGTGCCCACACACAGG+TGG | + | chr6.4:16230631-16230650 | None:intergenic | 60.0% | |
| GATCGGAGCGATTTGAGCGC+CGG | + | chr6.4:16228692-16228711 | None:intergenic | 60.0% | |
| GCCGCATGCACAACAGCCTT+CGG | + | chr6.4:16230601-16230620 | None:intergenic | 60.0% | |
| GCCGGCGATGAAGAAGACAC+CGG | - | chr6.4:16228670-16228689 | MS.gene42057:CDS | 60.0% | |
| GCCGGTGTCTTCTTCATCGC+CGG | + | chr6.4:16228674-16228693 | None:intergenic | 60.0% | |
| GGTGTCTTCTTCATCGCCGG+CGG | + | chr6.4:16228671-16228690 | None:intergenic | 60.0% | |
| GTGTCTTCTTCATCGCCGGC+GGG | + | chr6.4:16228670-16228689 | None:intergenic | 60.0% | |
| GCGCCATTGTGCCCACACAC+AGG | + | chr6.4:16230634-16230653 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 16228628 | 16231244 | 16228628 | ID=MS.gene42057 |
| chr6.4 | mRNA | 16228628 | 16231244 | 16228628 | ID=MS.gene42057.t1;Parent=MS.gene42057 |
| chr6.4 | exon | 16231099 | 16231244 | 16231099 | ID=MS.gene42057.t1.exon1;Parent=MS.gene42057.t1 |
| chr6.4 | CDS | 16231099 | 16231244 | 16231099 | ID=cds.MS.gene42057.t1;Parent=MS.gene42057.t1 |
| chr6.4 | exon | 16230423 | 16230574 | 16230423 | ID=MS.gene42057.t1.exon2;Parent=MS.gene42057.t1 |
| chr6.4 | CDS | 16230423 | 16230574 | 16230423 | ID=cds.MS.gene42057.t1;Parent=MS.gene42057.t1 |
| chr6.4 | exon | 16229905 | 16230030 | 16229905 | ID=MS.gene42057.t1.exon3;Parent=MS.gene42057.t1 |
| chr6.4 | CDS | 16229905 | 16230030 | 16229905 | ID=cds.MS.gene42057.t1;Parent=MS.gene42057.t1 |
| chr6.4 | exon | 16228628 | 16228878 | 16228628 | ID=MS.gene42057.t1.exon4;Parent=MS.gene42057.t1 |
| chr6.4 | CDS | 16228628 | 16228878 | 16228628 | ID=cds.MS.gene42057.t1;Parent=MS.gene42057.t1 |
| Gene Sequence |
| Protein sequence |
