Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44331.t1 | XP_003613143.1 | 90.8 | 346 | 32 | 0 | 1 | 346 | 1 | 346 | 3.10E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44331.t1 | Q9FVQ0 | 56.1 | 344 | 151 | 0 | 3 | 346 | 2 | 345 | 4.2e-110 | 399.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44331.t1 | G7JYZ1 | 90.8 | 346 | 32 | 0 | 1 | 346 | 1 | 346 | 2.3e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038029 | MS.gene44331 | PPI |
| MS.gene09884 | MS.gene44331 | PPI |
| MS.gene031178 | MS.gene44331 | PPI |
| MS.gene32792 | MS.gene44331 | PPI |
| MS.gene64265 | MS.gene44331 | PPI |
| MS.gene064951 | MS.gene44331 | PPI |
| MS.gene56048 | MS.gene44331 | PPI |
| MS.gene44331 | MS.gene064951 | PPI |
| MS.gene40340 | MS.gene44331 | PPI |
| MS.gene021474 | MS.gene44331 | PPI |
| MS.gene059136 | MS.gene44331 | PPI |
| MS.gene059027 | MS.gene44331 | PPI |
| MS.gene23537 | MS.gene44331 | PPI |
| MS.gene31616 | MS.gene44331 | PPI |
| MS.gene51580 | MS.gene44331 | PPI |
| MS.gene61665 | MS.gene44331 | PPI |
| MS.gene24021 | MS.gene44331 | PPI |
| MS.gene014685 | MS.gene44331 | PPI |
| MS.gene018590 | MS.gene44331 | PPI |
| MS.gene53594 | MS.gene44331 | PPI |
| MS.gene60245 | MS.gene44331 | PPI |
| MS.gene015953 | MS.gene44331 | PPI |
| MS.gene94810 | MS.gene44331 | PPI |
| MS.gene061851 | MS.gene44331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44331.t1 | MTR_5g033260 | 90.751 | 346 | 32 | 0 | 1 | 346 | 1 | 346 | 0.0 | 650 |
| MS.gene44331.t1 | MTR_8g432640 | 81.044 | 364 | 68 | 1 | 1 | 363 | 1 | 364 | 0.0 | 603 |
| MS.gene44331.t1 | MTR_3g088925 | 51.304 | 345 | 166 | 2 | 3 | 346 | 4 | 347 | 4.32e-123 | 360 |
| MS.gene44331.t1 | MTR_3g088945 | 51.014 | 345 | 167 | 2 | 3 | 346 | 4 | 347 | 3.60e-122 | 358 |
| MS.gene44331.t1 | MTR_3g088955 | 50.435 | 345 | 169 | 2 | 3 | 346 | 4 | 347 | 9.76e-121 | 354 |
| MS.gene44331.t1 | MTR_7g107690 | 48.824 | 340 | 174 | 0 | 2 | 341 | 4 | 343 | 1.98e-120 | 353 |
| MS.gene44331.t1 | MTR_4g051642 | 51.304 | 345 | 166 | 2 | 3 | 346 | 4 | 347 | 7.72e-120 | 352 |
| MS.gene44331.t1 | MTR_7g107710 | 48.739 | 357 | 179 | 3 | 1 | 354 | 1 | 356 | 3.25e-116 | 342 |
| MS.gene44331.t1 | MTR_3g109520 | 45.217 | 345 | 183 | 2 | 7 | 346 | 40 | 383 | 1.88e-107 | 322 |
| MS.gene44331.t1 | MTR_1g069275 | 46.724 | 351 | 171 | 6 | 7 | 348 | 26 | 369 | 3.12e-105 | 316 |
| MS.gene44331.t1 | MTR_7g099330 | 46.087 | 345 | 174 | 4 | 7 | 346 | 25 | 362 | 9.59e-105 | 314 |
| MS.gene44331.t1 | MTR_6g086870 | 45.272 | 349 | 180 | 4 | 7 | 346 | 21 | 367 | 3.48e-103 | 310 |
| MS.gene44331.t1 | MTR_1g046230 | 45.402 | 348 | 179 | 6 | 7 | 346 | 25 | 369 | 4.99e-102 | 308 |
| MS.gene44331.t1 | MTR_1g008380 | 43.188 | 345 | 189 | 3 | 7 | 346 | 43 | 385 | 6.97e-102 | 307 |
| MS.gene44331.t1 | MTR_1g011630 | 43.478 | 345 | 184 | 5 | 7 | 346 | 17 | 355 | 3.70e-101 | 305 |
| MS.gene44331.t1 | MTR_3g096030 | 74.725 | 182 | 22 | 1 | 1 | 182 | 1 | 158 | 9.87e-92 | 272 |
| MS.gene44331.t1 | MTR_7g099160 | 43.431 | 274 | 143 | 4 | 78 | 346 | 217 | 483 | 1.63e-69 | 227 |
| MS.gene44331.t1 | MTR_3g096020 | 52.212 | 113 | 16 | 3 | 212 | 323 | 1 | 76 | 5.73e-23 | 100 |
| MS.gene44331.t1 | MTR_2g450310 | 24.538 | 379 | 215 | 13 | 3 | 316 | 2 | 374 | 1.00e-14 | 75.5 |
| MS.gene44331.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 6.49e-13 | 68.6 |
| MS.gene44331.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.03e-12 | 68.6 |
| MS.gene44331.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.43e-12 | 68.9 |
| MS.gene44331.t1 | MTR_8g037880 | 23.874 | 222 | 142 | 5 | 6 | 202 | 4 | 223 | 2.32e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44331.t1 | AT1G48910 | 56.105 | 344 | 151 | 0 | 3 | 346 | 2 | 345 | 1.01e-140 | 405 |
| MS.gene44331.t1 | AT1G21430 | 50.729 | 343 | 164 | 4 | 6 | 346 | 9 | 348 | 2.88e-117 | 345 |
| MS.gene44331.t1 | AT1G04610 | 46.839 | 348 | 175 | 5 | 7 | 346 | 38 | 383 | 1.62e-108 | 325 |
| MS.gene44331.t1 | AT5G11320 | 45.217 | 345 | 176 | 4 | 7 | 346 | 18 | 354 | 1.11e-105 | 317 |
| MS.gene44331.t1 | AT5G25620 | 46.110 | 347 | 177 | 5 | 7 | 346 | 33 | 376 | 1.46e-105 | 317 |
| MS.gene44331.t1 | AT5G25620 | 46.398 | 347 | 176 | 5 | 7 | 346 | 33 | 376 | 3.88e-105 | 316 |
| MS.gene44331.t1 | AT1G04180 | 44.798 | 346 | 181 | 5 | 7 | 346 | 26 | 367 | 5.07e-104 | 313 |
| MS.gene44331.t1 | AT5G43890 | 44.957 | 347 | 182 | 5 | 7 | 346 | 26 | 370 | 5.16e-104 | 313 |
| MS.gene44331.t1 | AT4G28720 | 44.638 | 345 | 182 | 5 | 7 | 344 | 26 | 368 | 2.50e-103 | 311 |
| MS.gene44331.t1 | AT4G32540 | 44.220 | 346 | 180 | 5 | 7 | 346 | 22 | 360 | 9.08e-103 | 309 |
| MS.gene44331.t1 | AT4G32540 | 44.380 | 347 | 180 | 5 | 7 | 346 | 22 | 362 | 1.06e-102 | 309 |
| MS.gene44331.t1 | AT5G11320 | 46.130 | 323 | 162 | 3 | 7 | 324 | 18 | 333 | 2.48e-101 | 303 |
| MS.gene44331.t1 | AT4G13260 | 44.348 | 345 | 186 | 2 | 7 | 346 | 29 | 372 | 1.06e-100 | 304 |
| MS.gene44331.t1 | AT2G33230 | 43.966 | 348 | 184 | 5 | 7 | 346 | 33 | 377 | 2.25e-98 | 298 |
| MS.gene44331.t1 | AT4G13260 | 47.163 | 282 | 144 | 1 | 7 | 283 | 29 | 310 | 6.60e-91 | 275 |
| MS.gene44331.t1 | AT4G13260 | 40.458 | 262 | 150 | 2 | 90 | 346 | 9 | 269 | 3.84e-60 | 196 |
| MS.gene44331.t1 | AT1G62560 | 25.581 | 215 | 127 | 6 | 6 | 190 | 13 | 224 | 1.77e-13 | 71.6 |
| MS.gene44331.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 2.55e-13 | 71.2 |
| MS.gene44331.t1 | AT1G19250 | 23.298 | 382 | 217 | 17 | 1 | 315 | 8 | 380 | 3.67e-12 | 67.8 |
| MS.gene44331.t1 | AT1G65860 | 22.566 | 226 | 145 | 6 | 6 | 203 | 13 | 236 | 6.33e-11 | 63.9 |
| MS.gene44331.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 8.66e-11 | 63.5 |
| MS.gene44331.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 8.66e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGATTTATCGTCCCAAAT+TGG | 0.218572 | 5.4:+23641396 | MS.gene44331:CDS |
| GTATTGAAGGAATTGGTATT+TGG | 0.229329 | 5.4:-23639542 | None:intergenic |
| CATTTGTAAAGGTCCCAATT+TGG | 0.241094 | 5.4:-23641410 | None:intergenic |
| ATTGTAGGTGCTGGTCCTTC+TGG | 0.274701 | 5.4:+23639340 | MS.gene44331:CDS |
| GGATGCTATCATTACTTTAT+CGG | 0.293233 | 5.4:+23641342 | MS.gene44331:CDS |
| AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 5.4:-23639517 | None:intergenic |
| TTACAAATGAAGAATCTTAC+AGG | 0.315816 | 5.4:+23641424 | MS.gene44331:CDS |
| ATGATTGTTGTGCTTCTCTT+TGG | 0.323198 | 5.4:+23639422 | MS.gene44331:CDS |
| ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 5.4:+23639822 | MS.gene44331:CDS |
| CTGAGGGTGGGTGAGGCATG+AGG | 0.329207 | 5.4:-23639504 | None:intergenic |
| GGACTTCGAACGACAATAGA+TGG | 0.338818 | 5.4:-23639907 | None:intergenic |
| TTATCGGCAAAACTAAAATA+TGG | 0.345197 | 5.4:+23641358 | MS.gene44331:CDS |
| GAACACTATAGAAGGGATAT+TGG | 0.347771 | 5.4:+23639669 | MS.gene44331:CDS |
| ATTTGTAAAGGTCCCAATTT+GGG | 0.347806 | 5.4:-23641409 | None:intergenic |
| AGAGGCTGTGGGAGTCAAAA+TGG | 0.348107 | 5.4:+23642174 | MS.gene44331:CDS |
| TGTCTATGTATTGAAGGAAT+TGG | 0.353488 | 5.4:-23639549 | None:intergenic |
| TGGAACTGTCGAAAAGATTA+AGG | 0.360924 | 5.4:+23641468 | MS.gene44331:CDS |
| GGCTACAAAAGCATAACTAA+TGG | 0.367252 | 5.4:+23641850 | MS.gene44331:CDS |
| GAAACAAAGAACACTATAGA+AGG | 0.371049 | 5.4:+23639661 | MS.gene44331:CDS |
| CACTCTAAATATTACAAATC+TGG | 0.373703 | 5.4:+23639793 | MS.gene44331:CDS |
| TTATTCAGTCCAGGCACATT+AGG | 0.380732 | 5.4:-23639751 | None:intergenic |
| GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 5.4:-23639511 | None:intergenic |
| ATCTATTGTCGTTCGAAGTC+CGG | 0.385488 | 5.4:+23639909 | MS.gene44331:CDS |
| GATTAAGGAGGGATCTATAA+AGG | 0.408201 | 5.4:+23641483 | MS.gene44331:CDS |
| GGGATTTATCGTCCCAAATT+GGG | 0.412423 | 5.4:+23641397 | MS.gene44331:CDS |
| CATATTTGTCTATGTATTGA+AGG | 0.420134 | 5.4:-23639555 | None:intergenic |
| CATAACTAATGGGTGGCTTA+AGG | 0.420449 | 5.4:+23641861 | MS.gene44331:CDS |
| GAATCCACAGTTGTAATTGT+AGG | 0.425297 | 5.4:+23639325 | MS.gene44331:CDS |
| GGGACGATAAATCCCGTACT+TGG | 0.427951 | 5.4:-23641389 | None:intergenic |
| ATGGGTTAGCACCCGAGTTA+TGG | 0.434610 | 5.4:-23639888 | None:intergenic |
| ACTCAACTGTGCGACAATAG+TGG | 0.435776 | 5.4:-23639600 | None:intergenic |
| CTCATGCCTCACCCACCCTC+AGG | 0.443220 | 5.4:+23639505 | MS.gene44331:CDS |
| ATTGTTGTGCTTCTCTTTGG+AGG | 0.448516 | 5.4:+23639425 | MS.gene44331:CDS |
| AAATATGCTCTTAATGAGAA+AGG | 0.450742 | 5.4:+23642083 | MS.gene44331:CDS |
| GTAAGATTCTTCATTTGTAA+AGG | 0.451233 | 5.4:-23641421 | None:intergenic |
| ATAGCATCCACAATAGCAAC+TGG | 0.454424 | 5.4:-23641328 | None:intergenic |
| GCTACAAAAGCATAACTAAT+GGG | 0.458461 | 5.4:+23641851 | MS.gene44331:CDS |
| GGTATTTGGATAGGTAGGTT+GGG | 0.467624 | 5.4:-23639528 | None:intergenic |
| TATGGTGATTTGTCCAAGTA+CGG | 0.467911 | 5.4:+23641376 | MS.gene44331:CDS |
| GGATAGGTAGGTTGGGCCTG+AGG | 0.468970 | 5.4:-23639521 | None:intergenic |
| AATATGCTCTTAATGAGAAA+GGG | 0.471517 | 5.4:+23642084 | MS.gene44331:CDS |
| AGGGATATTGGAAGTTTATG+AGG | 0.472958 | 5.4:+23639681 | MS.gene44331:CDS |
| TGAGGGTGGGTGAGGCATGA+GGG | 0.473573 | 5.4:-23639503 | None:intergenic |
| CTCAACTGTGCGACAATAGT+GGG | 0.478673 | 5.4:-23639599 | None:intergenic |
| AAGTTTCTTGTGATCGCCAC+TGG | 0.479220 | 5.4:+23639706 | MS.gene44331:CDS |
| ATTTCACCATTCGCATCCCT+TGG | 0.479361 | 5.4:-23641300 | None:intergenic |
| GAATTGGTATTTGGATAGGT+AGG | 0.480246 | 5.4:-23639533 | None:intergenic |
| GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 5.4:+23639742 | MS.gene44331:CDS |
| GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 5.4:-23639520 | None:intergenic |
| GAAGGAATTGGTATTTGGAT+AGG | 0.493929 | 5.4:-23639537 | None:intergenic |
| GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 5.4:-23639516 | None:intergenic |
| ATGATGAGGTTAGAAACAAA+TGG | 0.503942 | 5.4:+23639632 | MS.gene44331:CDS |
| TGGTATTTGGATAGGTAGGT+TGG | 0.507880 | 5.4:-23639529 | None:intergenic |
| CCTTCAAAGTTATTCAGTCC+AGG | 0.511343 | 5.4:-23639760 | None:intergenic |
| AAGTCCGCAGTTATTGATGT+TGG | 0.521748 | 5.4:+23641448 | MS.gene44331:CDS |
| CCTGGACTGAATAACTTTGA+AGG | 0.524426 | 5.4:+23639760 | MS.gene44331:CDS |
| TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 5.4:+23639816 | MS.gene44331:CDS |
| TGCTTATGATCTCCATAACT+CGG | 0.526560 | 5.4:+23639876 | MS.gene44331:CDS |
| ATGCTTACCCGAACATTGGA+AGG | 0.528332 | 5.4:+23642117 | MS.gene44331:CDS |
| ATGGTGATTTGTCCAAGTAC+GGG | 0.532353 | 5.4:+23641377 | MS.gene44331:CDS |
| ACAGTTGTAATTGTAGGTGC+TGG | 0.535522 | 5.4:+23639331 | MS.gene44331:CDS |
| GGACTGTCAAGGAGAGGCTG+TGG | 0.546487 | 5.4:+23642162 | MS.gene44331:CDS |
| GTAGTTGGGTGTGGTAACTC+AGG | 0.547445 | 5.4:+23639844 | MS.gene44331:CDS |
| GAGGGTGGGTGAGGCATGAG+GGG | 0.557145 | 5.4:-23639502 | None:intergenic |
| TCAATGCTAGTGATATATGA+AGG | 0.561811 | 5.4:-23641763 | None:intergenic |
| GCAGAAATTGCTAGGCCAGA+AGG | 0.563796 | 5.4:-23639355 | None:intergenic |
| GACTGTCAAGGAGAGGCTGT+GGG | 0.565351 | 5.4:+23642163 | MS.gene44331:CDS |
| TTAGGCAAGCAGAAATTGCT+AGG | 0.575098 | 5.4:-23639363 | None:intergenic |
| ATGAGGTTAGAAACAAATGG+AGG | 0.583201 | 5.4:+23639635 | MS.gene44331:CDS |
| TGGGTGTGGTAACTCAGGAA+TGG | 0.594724 | 5.4:+23639849 | MS.gene44331:CDS |
| TGCTTACCCGAACATTGGAA+GGG | 0.605593 | 5.4:+23642118 | MS.gene44331:CDS |
| GGATCATGGATTGTACTGGC+AGG | 0.607065 | 5.4:+23642141 | MS.gene44331:CDS |
| TTGTACTGGCAGGACTGTCA+AGG | 0.608281 | 5.4:+23642151 | MS.gene44331:CDS |
| GCTTATGATCTCCATAACTC+GGG | 0.611693 | 5.4:+23639877 | MS.gene44331:CDS |
| GCTTACCCGAACATTGGAAG+GGG | 0.612833 | 5.4:+23642119 | MS.gene44331:CDS |
| AAACAAAGAACACTATAGAA+GGG | 0.614313 | 5.4:+23639662 | MS.gene44331:CDS |
| AACTGTCGAAAAGATTAAGG+AGG | 0.618608 | 5.4:+23641471 | MS.gene44331:CDS |
| TGATCGTTTAAACCTCCACT+TGG | 0.624802 | 5.4:+23639459 | MS.gene44331:CDS |
| GTAGAGAAATGATTCACCAA+GGG | 0.627830 | 5.4:+23641284 | MS.gene44331:CDS |
| ACTGAATAACTTTGAAGGAG+AGG | 0.632240 | 5.4:+23639765 | MS.gene44331:CDS |
| ACTGTCGAAAAGATTAAGGA+GGG | 0.634444 | 5.4:+23641472 | MS.gene44331:CDS |
| GCCACTGGTGAAAATAGTGA+AGG | 0.638559 | 5.4:+23639721 | MS.gene44331:CDS |
| AGCAAAACTCACTAGCCAAG+TGG | 0.645422 | 5.4:-23639474 | None:intergenic |
| TGAGGTTAGAAACAAATGGA+GGG | 0.645489 | 5.4:+23639636 | MS.gene44331:CDS |
| GAATAACTTTGAAGGAGAGG+TGG | 0.646286 | 5.4:+23639768 | MS.gene44331:CDS |
| TGAGTCTGCTAAGTATGATG+AGG | 0.653647 | 5.4:+23639618 | MS.gene44331:CDS |
| GACTTCGAACGACAATAGAT+GGG | 0.661642 | 5.4:-23639906 | None:intergenic |
| ACAAAAGCATAACTAATGGG+TGG | 0.664351 | 5.4:+23641854 | MS.gene44331:CDS |
| CTGGCAGGACTGTCAAGGAG+AGG | 0.665597 | 5.4:+23642156 | MS.gene44331:CDS |
| AGCACCTACAATTACAACTG+TGG | 0.666119 | 5.4:-23639329 | None:intergenic |
| GATTCACCAAGGGATGCGAA+TGG | 0.671019 | 5.4:+23641294 | MS.gene44331:CDS |
| AGTAGAGAAATGATTCACCA+AGG | 0.673155 | 5.4:+23641283 | MS.gene44331:CDS |
| AAAACTCACTAGCCAAGTGG+AGG | 0.678012 | 5.4:-23639471 | None:intergenic |
| TCAACTGTGCGACAATAGTG+GGG | 0.708232 | 5.4:-23639598 | None:intergenic |
| CTTACCCGAACATTGGAAGG+GGG | 0.714024 | 5.4:+23642120 | MS.gene44331:CDS |
| AGTTCCAACATCAATAACTG+CGG | 0.739531 | 5.4:-23641452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr5.4:23640547-23640528 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5.4:23640696-23640677 | None:intergenic | 0.0% |
| !! | AATTAGTAAATTATCTATAA+AGG | - | chr5.4:23641574-23641593 | None:intergenic | 10.0% |
| !! | CAATATAAAAATAATATGTA+TGG | + | chr5.4:23641189-23641208 | MS.gene44331:intron | 10.0% |
| !!! | ATCAATATTATACAATATTT+TGG | + | chr5.4:23640276-23640295 | MS.gene44331:intron | 10.0% |
| !! | ACATACATACATATATATAT+AGG | + | chr5.4:23640738-23640757 | MS.gene44331:intron | 15.0% |
| !! | ATATATTCATCATAAAAACA+GGG | + | chr5.4:23641020-23641039 | MS.gene44331:intron | 15.0% |
| !! | CATAATCATAATTAAGATAA+AGG | + | chr5.4:23641898-23641917 | MS.gene44331:intron | 15.0% |
| !! | CATACATACATATATATATA+GGG | + | chr5.4:23640739-23640758 | MS.gene44331:intron | 15.0% |
| !! | TATATATTCATCATAAAAAC+AGG | + | chr5.4:23641019-23641038 | MS.gene44331:intron | 15.0% |
| !! | TATTAATAACTTGAAGAATT+AGG | - | chr5.4:23642028-23642047 | None:intergenic | 15.0% |
| !! | TTATAATATGTTCAAAACTA+TGG | + | chr5.4:23641684-23641703 | MS.gene44331:intron | 15.0% |
| !!! | AGTTTTTTTTTTAACAATGT+TGG | + | chr5.4:23641059-23641078 | MS.gene44331:intron | 15.0% |
| !! | AATGTAAGTTGTATATTGTA+AGG | - | chr5.4:23641946-23641965 | None:intergenic | 20.0% |
| !! | AATTTAAATTTGTATACCCA+AGG | + | chr5.4:23639987-23640006 | MS.gene44331:intron | 20.0% |
| !! | ACAATTAAATTGTCTATGTA+TGG | - | chr5.4:23640027-23640046 | None:intergenic | 20.0% |
| !! | ATATATTGAAAAAGAATTGC+TGG | - | chr5.4:23640200-23640219 | None:intergenic | 20.0% |
| !! | ATGTAAGTTGTATATTGTAA+GGG | - | chr5.4:23641945-23641964 | None:intergenic | 20.0% |
| !! | GAGTTAGAAATATTATTTAC+CGG | - | chr5.4:23639931-23639950 | None:intergenic | 20.0% |
| !! | TTCAAAATATGAATCAAAAG+AGG | + | chr5.4:23639816-23639835 | MS.gene44331:CDS | 20.0% |
| !!! | ATCTGAGATTGAATTATTAA+TGG | + | chr5.4:23640317-23640336 | MS.gene44331:intron | 20.0% |
| !!! | GGAAGTAAGAATAAATTTTT+TGG | + | chr5.4:23640359-23640378 | MS.gene44331:intron | 20.0% |
| !!! | TCTGAGATTGAATTATTAAT+GGG | + | chr5.4:23640318-23640337 | MS.gene44331:intron | 20.0% |
| !!! | TTATATGATGTATTTTTCGA+AGG | + | chr5.4:23642055-23642074 | MS.gene44331:intron | 20.0% |
| !!! | TTGTGTGCTTTTTTTTTTAT+TGG | + | chr5.4:23641982-23642001 | MS.gene44331:intron | 20.0% |
| ! | AAACAAAGAACACTATAGAA+GGG | + | chr5.4:23639662-23639681 | MS.gene44331:CDS | 25.0% |
| ! | AAATATGCTCTTAATGAGAA+AGG | + | chr5.4:23642083-23642102 | MS.gene44331:CDS | 25.0% |
| ! | AATAACTTGAAGAATTAGGA+AGG | - | chr5.4:23642024-23642043 | None:intergenic | 25.0% |
| ! | AATATGCTCTTAATGAGAAA+GGG | + | chr5.4:23642084-23642103 | MS.gene44331:CDS | 25.0% |
| ! | ATAACTTGAAGAATTAGGAA+GGG | - | chr5.4:23642023-23642042 | None:intergenic | 25.0% |
| ! | CACTCTAAATATTACAAATC+TGG | + | chr5.4:23639793-23639812 | MS.gene44331:CDS | 25.0% |
| ! | CATATTTGTCTATGTATTGA+AGG | - | chr5.4:23639558-23639577 | None:intergenic | 25.0% |
| ! | CTGAGATTGAATTATTAATG+GGG | + | chr5.4:23640319-23640338 | MS.gene44331:intron | 25.0% |
| ! | GAGAAAAAGAAAGTTGTATT+TGG | + | chr5.4:23641784-23641803 | MS.gene44331:CDS | 25.0% |
| ! | GTAAGATTCTTCATTTGTAA+AGG | - | chr5.4:23641424-23641443 | None:intergenic | 25.0% |
| ! | TTACAAATGAAGAATCTTAC+AGG | + | chr5.4:23641424-23641443 | MS.gene44331:CDS | 25.0% |
| ! | TTATCGGCAAAACTAAAATA+TGG | + | chr5.4:23641358-23641377 | MS.gene44331:CDS | 25.0% |
| !! | ATATGAATCAAAAGAGGTTT+TGG | + | chr5.4:23639822-23639841 | MS.gene44331:CDS | 25.0% |
| !! | TAAAGACAATATGTGTTTTG+CGG | + | chr5.4:23641218-23641237 | MS.gene44331:intron | 25.0% |
| !!! | TTTTTTTAGACCTATCTAGT+TGG | + | chr5.4:23640233-23640252 | MS.gene44331:intron | 25.0% |
| ACACCTTCATAAAAGTAAGT+TGG | - | chr5.4:23640835-23640854 | None:intergenic | 30.0% | |
| ATGATGAGGTTAGAAACAAA+TGG | + | chr5.4:23639632-23639651 | MS.gene44331:CDS | 30.0% | |
| ATGTCACACACTTACTTTAA+TGG | - | chr5.4:23641715-23641734 | None:intergenic | 30.0% | |
| ATTTGTAAAGGTCCCAATTT+GGG | - | chr5.4:23641412-23641431 | None:intergenic | 30.0% | |
| GAAACAAAGAACACTATAGA+AGG | + | chr5.4:23639661-23639680 | MS.gene44331:CDS | 30.0% | |
| GGAGATTTATATGTATCCTT+GGG | - | chr5.4:23640006-23640025 | None:intergenic | 30.0% | |
| GGATGCTATCATTACTTTAT+CGG | + | chr5.4:23641342-23641361 | MS.gene44331:CDS | 30.0% | |
| GTATTGAAGGAATTGGTATT+TGG | - | chr5.4:23639545-23639564 | None:intergenic | 30.0% | |
| TCAATGCTAGTGATATATGA+AGG | - | chr5.4:23641766-23641785 | None:intergenic | 30.0% | |
| TGGAGATTTATATGTATCCT+TGG | - | chr5.4:23640007-23640026 | None:intergenic | 30.0% | |
| TGTCTATGTATTGAAGGAAT+TGG | - | chr5.4:23639552-23639571 | None:intergenic | 30.0% | |
| TGTGTGACATAACTTTGATT+TGG | + | chr5.4:23641725-23641744 | MS.gene44331:intron | 30.0% | |
| TTATAGATGTCCAACTAGAT+AGG | - | chr5.4:23640246-23640265 | None:intergenic | 30.0% | |
| ! | GCTACAAAAGCATAACTAAT+GGG | + | chr5.4:23641851-23641870 | MS.gene44331:CDS | 30.0% |
| !! | ACACCAACTTACTTTTATGA+AGG | + | chr5.4:23640829-23640848 | MS.gene44331:intron | 30.0% |
| !! | ATATTTTCCAGTTGCTATTG+TGG | + | chr5.4:23641321-23641340 | MS.gene44331:CDS | 30.0% |
| !!! | ATATTTTGGTGTGTTAACCA+AGG | + | chr5.4:23640290-23640309 | MS.gene44331:intron | 30.0% |
| !!! | GGGGCTAATTTTTTTTTTGA+AGG | + | chr5.4:23640338-23640357 | MS.gene44331:intron | 30.0% |
| !!! | TATTTTGGTGTGTTAACCAA+GGG | + | chr5.4:23640291-23640310 | MS.gene44331:intron | 30.0% |
| AAAAATGCTTACCCGAACAT+TGG | + | chr5.4:23642113-23642132 | MS.gene44331:CDS | 35.0% | |
| AACTGTCGAAAAGATTAAGG+AGG | + | chr5.4:23641471-23641490 | MS.gene44331:CDS | 35.0% | |
| ACTGTCGAAAAGATTAAGGA+GGG | + | chr5.4:23641472-23641491 | MS.gene44331:CDS | 35.0% | |
| AGGGATATTGGAAGTTTATG+AGG | + | chr5.4:23639681-23639700 | MS.gene44331:CDS | 35.0% | |
| AGTAGAGAAATGATTCACCA+AGG | + | chr5.4:23641283-23641302 | MS.gene44331:CDS | 35.0% | |
| AGTTCCAACATCAATAACTG+CGG | - | chr5.4:23641455-23641474 | None:intergenic | 35.0% | |
| ATATATGAAGGAACAACCTG+TGG | - | chr5.4:23641754-23641773 | None:intergenic | 35.0% | |
| ATGAGGTTAGAAACAAATGG+AGG | + | chr5.4:23639635-23639654 | MS.gene44331:CDS | 35.0% | |
| ATGATTGTTGTGCTTCTCTT+TGG | + | chr5.4:23639422-23639441 | MS.gene44331:CDS | 35.0% | |
| ATTAATCATCTACACACACG+AGG | - | chr5.4:23641529-23641548 | None:intergenic | 35.0% | |
| CATTTGTAAAGGTCCCAATT+TGG | - | chr5.4:23641413-23641432 | None:intergenic | 35.0% | |
| CTAAAAGACACCTTCACAAA+AGG | - | chr5.4:23640780-23640799 | None:intergenic | 35.0% | |
| GAACACTATAGAAGGGATAT+TGG | + | chr5.4:23639669-23639688 | MS.gene44331:CDS | 35.0% | |
| GAAGGAATTGGTATTTGGAT+AGG | - | chr5.4:23639540-23639559 | None:intergenic | 35.0% | |
| GAATCCACAGTTGTAATTGT+AGG | + | chr5.4:23639325-23639344 | MS.gene44331:CDS | 35.0% | |
| GAATTGGTATTTGGATAGGT+AGG | - | chr5.4:23639536-23639555 | None:intergenic | 35.0% | |
| GATTAAGGAGGGATCTATAA+AGG | + | chr5.4:23641483-23641502 | MS.gene44331:CDS | 35.0% | |
| GTAGAGAAATGATTCACCAA+GGG | + | chr5.4:23641284-23641303 | MS.gene44331:CDS | 35.0% | |
| TGAGGTTAGAAACAAATGGA+GGG | + | chr5.4:23639636-23639655 | MS.gene44331:CDS | 35.0% | |
| TGCTTATGATCTCCATAACT+CGG | + | chr5.4:23639876-23639895 | MS.gene44331:CDS | 35.0% | |
| TGGAACTGTCGAAAAGATTA+AGG | + | chr5.4:23641468-23641487 | MS.gene44331:CDS | 35.0% | |
| ! | ACAAAAGCATAACTAATGGG+TGG | + | chr5.4:23641854-23641873 | MS.gene44331:CDS | 35.0% |
| ! | ACTGAATAACTTTGAAGGAG+AGG | + | chr5.4:23639765-23639784 | MS.gene44331:CDS | 35.0% |
| ! | GGCTACAAAAGCATAACTAA+TGG | + | chr5.4:23641850-23641869 | MS.gene44331:CDS | 35.0% |
| ! | TATGGTGATTTGTCCAAGTA+CGG | + | chr5.4:23641376-23641395 | MS.gene44331:CDS | 35.0% |
| !! | AGTGGGGTTTTATGTTGAAA+TGG | - | chr5.4:23639585-23639604 | None:intergenic | 35.0% |
| !! | CAAAAGAGGTTTTGGTAGTT+GGG | + | chr5.4:23639830-23639849 | MS.gene44331:CDS | 35.0% |
| !! | TCAAAAGAGGTTTTGGTAGT+TGG | + | chr5.4:23639829-23639848 | MS.gene44331:CDS | 35.0% |
| !!! | ATGTTCGGGTAAGCATTTTT+TGG | - | chr5.4:23642113-23642132 | None:intergenic | 35.0% |
| AAAGTGCAAATCACACCTTG+AGG | + | chr5.4:23640877-23640896 | MS.gene44331:intron | 40.0% | |
| AAGTCCGCAGTTATTGATGT+TGG | + | chr5.4:23641448-23641467 | MS.gene44331:CDS | 40.0% | |
| ACAGTTGTAATTGTAGGTGC+TGG | + | chr5.4:23639331-23639350 | MS.gene44331:CDS | 40.0% | |
| AGCACCTACAATTACAACTG+TGG | - | chr5.4:23639332-23639351 | None:intergenic | 40.0% | |
| ATAGCATCCACAATAGCAAC+TGG | - | chr5.4:23641331-23641350 | None:intergenic | 40.0% | |
| ATCTATTGTCGTTCGAAGTC+CGG | + | chr5.4:23639909-23639928 | MS.gene44331:CDS | 40.0% | |
| ATTGTTGTGCTTCTCTTTGG+AGG | + | chr5.4:23639425-23639444 | MS.gene44331:CDS | 40.0% | |
| CCTGGACTGAATAACTTTGA+AGG | + | chr5.4:23639760-23639779 | MS.gene44331:CDS | 40.0% | |
| CCTTCAAAGTTATTCAGTCC+AGG | - | chr5.4:23639763-23639782 | None:intergenic | 40.0% | |
| GACTTCGAACGACAATAGAT+GGG | - | chr5.4:23639909-23639928 | None:intergenic | 40.0% | |
| GCTTATGATCTCCATAACTC+GGG | + | chr5.4:23639877-23639896 | MS.gene44331:CDS | 40.0% | |
| GGGATTTATCGTCCCAAATT+GGG | + | chr5.4:23641397-23641416 | MS.gene44331:CDS | 40.0% | |
| GGTATTTGGATAGGTAGGTT+GGG | - | chr5.4:23639531-23639550 | None:intergenic | 40.0% | |
| GGTTATATTCCTAATGTGCC+TGG | + | chr5.4:23639742-23639761 | MS.gene44331:CDS | 40.0% | |
| TGAGTCTGCTAAGTATGATG+AGG | + | chr5.4:23639618-23639637 | MS.gene44331:CDS | 40.0% | |
| TGATCGTTTAAACCTCCACT+TGG | + | chr5.4:23639459-23639478 | MS.gene44331:CDS | 40.0% | |
| TGCTAAAAGACACCACCAAA+GGG | + | chr5.4:23640907-23640926 | MS.gene44331:intron | 40.0% | |
| TGGTATTTGGATAGGTAGGT+TGG | - | chr5.4:23639532-23639551 | None:intergenic | 40.0% | |
| TTAGGCAAGCAGAAATTGCT+AGG | - | chr5.4:23639366-23639385 | None:intergenic | 40.0% | |
| TTATTCAGTCCAGGCACATT+AGG | - | chr5.4:23639754-23639773 | None:intergenic | 40.0% | |
| TTGCTAAAAGACACCACCAA+AGG | + | chr5.4:23640906-23640925 | MS.gene44331:intron | 40.0% | |
| ! | ACCTTCACTATTTTCACCAG+TGG | - | chr5.4:23639725-23639744 | None:intergenic | 40.0% |
| ! | ATGGTGATTTGTCCAAGTAC+GGG | + | chr5.4:23641377-23641396 | MS.gene44331:CDS | 40.0% |
| ! | CATAACTAATGGGTGGCTTA+AGG | + | chr5.4:23641861-23641880 | MS.gene44331:CDS | 40.0% |
| ! | CTAGAAGACACCTTTTGTGA+AGG | + | chr5.4:23640767-23640786 | MS.gene44331:intron | 40.0% |
| ! | GAATAACTTTGAAGGAGAGG+TGG | + | chr5.4:23639768-23639787 | MS.gene44331:CDS | 40.0% |
| ! | TTTTAGCAAGTCACACCTCA+AGG | - | chr5.4:23640895-23640914 | None:intergenic | 40.0% |
| !! | AACTTTGATTTGGATGCCAC+AGG | + | chr5.4:23641735-23641754 | MS.gene44331:intron | 40.0% |
| !! | GAGAGATGCAGTTTTGTGTT+AGG | - | chr5.4:23639384-23639403 | None:intergenic | 40.0% |
| AAAACTCACTAGCCAAGTGG+AGG | - | chr5.4:23639474-23639493 | None:intergenic | 45.0% | |
| AAGTTTCTTGTGATCGCCAC+TGG | + | chr5.4:23639706-23639725 | MS.gene44331:CDS | 45.0% | |
| ACTCAACTGTGCGACAATAG+TGG | - | chr5.4:23639603-23639622 | None:intergenic | 45.0% | |
| AGCAAAACTCACTAGCCAAG+TGG | - | chr5.4:23639477-23639496 | None:intergenic | 45.0% | |
| ATGATCCCCCTTCCAATGTT+CGG | - | chr5.4:23642128-23642147 | None:intergenic | 45.0% | |
| ATGCTTACCCGAACATTGGA+AGG | + | chr5.4:23642117-23642136 | MS.gene44331:CDS | 45.0% | |
| ATTTCACCATTCGCATCCCT+TGG | - | chr5.4:23641303-23641322 | None:intergenic | 45.0% | |
| CGGGATTTATCGTCCCAAAT+TGG | + | chr5.4:23641396-23641415 | MS.gene44331:CDS | 45.0% | |
| CTCAACTGTGCGACAATAGT+GGG | - | chr5.4:23639602-23639621 | None:intergenic | 45.0% | |
| GCCACTGGTGAAAATAGTGA+AGG | + | chr5.4:23639721-23639740 | MS.gene44331:CDS | 45.0% | |
| GGACTTCGAACGACAATAGA+TGG | - | chr5.4:23639910-23639929 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr5.4:23640910-23640929 | MS.gene44331:intron | 45.0% | |
| TCAACTGTGCGACAATAGTG+GGG | - | chr5.4:23639601-23639620 | None:intergenic | 45.0% | |
| TGCTTACCCGAACATTGGAA+GGG | + | chr5.4:23642118-23642137 | MS.gene44331:CDS | 45.0% | |
| ! | TTTGGTGTGTTAACCAAGGG+CGG | + | chr5.4:23640294-23640313 | MS.gene44331:intron | 45.0% |
| !! | TATTCAAAAAATAATAATAA+TGG | - | chr5.4:23641100-23641119 | None:intergenic | 5.0% |
| AGAGGCTGTGGGAGTCAAAA+TGG | + | chr5.4:23642174-23642193 | MS.gene44331:CDS | 50.0% | |
| CTTACCCGAACATTGGAAGG+GGG | + | chr5.4:23642120-23642139 | MS.gene44331:CDS | 50.0% | |
| GAACATTGGAAGGGGGATCA+TGG | + | chr5.4:23642127-23642146 | MS.gene44331:CDS | 50.0% | |
| GATTCACCAAGGGATGCGAA+TGG | + | chr5.4:23641294-23641313 | MS.gene44331:CDS | 50.0% | |
| GCAGAAATTGCTAGGCCAGA+AGG | - | chr5.4:23639358-23639377 | None:intergenic | 50.0% | |
| GCTTACCCGAACATTGGAAG+GGG | + | chr5.4:23642119-23642138 | MS.gene44331:CDS | 50.0% | |
| GGGACGATAAATCCCGTACT+TGG | - | chr5.4:23641392-23641411 | None:intergenic | 50.0% | |
| GTAGTTGGGTGTGGTAACTC+AGG | + | chr5.4:23639844-23639863 | MS.gene44331:CDS | 50.0% | |
| TCTTGCTACAAGCCACCCTT+TGG | - | chr5.4:23640925-23640944 | None:intergenic | 50.0% | |
| TGATCCCCCTTCCAATGTTC+GGG | - | chr5.4:23642127-23642146 | None:intergenic | 50.0% | |
| TGGGTGTGGTAACTCAGGAA+TGG | + | chr5.4:23639849-23639868 | MS.gene44331:CDS | 50.0% | |
| TTCAATCTCAGATCCGCCCT+TGG | - | chr5.4:23640310-23640329 | None:intergenic | 50.0% | |
| ! | AGGGGGATCATGGATTGTAC+TGG | + | chr5.4:23642137-23642156 | MS.gene44331:CDS | 50.0% |
| ! | GATGCGATCGTTTTCGCAAC+TGG | + | chr5.4:23641829-23641848 | MS.gene44331:CDS | 50.0% |
| ! | GGATCATGGATTGTACTGGC+AGG | + | chr5.4:23642141-23642160 | MS.gene44331:CDS | 50.0% |
| ! | TTGTACTGGCAGGACTGTCA+AGG | + | chr5.4:23642151-23642170 | MS.gene44331:CDS | 50.0% |
| !! | ATGGGTTAGCACCCGAGTTA+TGG | - | chr5.4:23639891-23639910 | None:intergenic | 50.0% |
| !! | ATTGTAGGTGCTGGTCCTTC+TGG | + | chr5.4:23639340-23639359 | MS.gene44331:CDS | 50.0% |
| !! | GAGGTTTTGGTAGTTGGGTG+TGG | + | chr5.4:23639835-23639854 | MS.gene44331:CDS | 50.0% |
| GACTGTCAAGGAGAGGCTGT+GGG | + | chr5.4:23642163-23642182 | MS.gene44331:CDS | 55.0% | |
| TGCTACAAGCCACCCTTTGG+TGG | - | chr5.4:23640922-23640941 | None:intergenic | 55.0% | |
| ! | GATAGGTAGGTTGGGCCTGA+GGG | - | chr5.4:23639523-23639542 | None:intergenic | 55.0% |
| CTGGCAGGACTGTCAAGGAG+AGG | + | chr5.4:23642156-23642175 | MS.gene44331:CDS | 60.0% | |
| GGACTGTCAAGGAGAGGCTG+TGG | + | chr5.4:23642162-23642181 | MS.gene44331:CDS | 60.0% | |
| TGAGGGTGGGTGAGGCATGA+GGG | - | chr5.4:23639506-23639525 | None:intergenic | 60.0% | |
| ! | GGATAGGTAGGTTGGGCCTG+AGG | - | chr5.4:23639524-23639543 | None:intergenic | 60.0% |
| CTCATGCCTCACCCACCCTC+AGG | + | chr5.4:23639505-23639524 | MS.gene44331:CDS | 65.0% | |
| CTGAGGGTGGGTGAGGCATG+AGG | - | chr5.4:23639507-23639526 | None:intergenic | 65.0% | |
| GAGGGTGGGTGAGGCATGAG+GGG | - | chr5.4:23639505-23639524 | None:intergenic | 65.0% | |
| ! | AGGTAGGTTGGGCCTGAGGG+TGG | - | chr5.4:23639520-23639539 | None:intergenic | 65.0% |
| ! | GGTAGGTTGGGCCTGAGGGT+GGG | - | chr5.4:23639519-23639538 | None:intergenic | 65.0% |
| GTTGGGCCTGAGGGTGGGTG+AGG | - | chr5.4:23639514-23639533 | None:intergenic | 70.0% | |
| ! | CGCGCGCGCGCGCGCGTGTG+TGG | - | chr5.4:23640487-23640506 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 23639319 | 23642203 | 23639319 | ID=MS.gene44331 |
| chr5.4 | mRNA | 23639319 | 23642203 | 23639319 | ID=MS.gene44331.t1;Parent=MS.gene44331 |
| chr5.4 | exon | 23639319 | 23639930 | 23639319 | ID=MS.gene44331.t1.exon1;Parent=MS.gene44331.t1 |
| chr5.4 | CDS | 23639319 | 23639930 | 23639319 | ID=cds.MS.gene44331.t1;Parent=MS.gene44331.t1 |
| chr5.4 | exon | 23641271 | 23641504 | 23641271 | ID=MS.gene44331.t1.exon2;Parent=MS.gene44331.t1 |
| chr5.4 | CDS | 23641271 | 23641504 | 23641271 | ID=cds.MS.gene44331.t1;Parent=MS.gene44331.t1 |
| chr5.4 | exon | 23641757 | 23641882 | 23641757 | ID=MS.gene44331.t1.exon3;Parent=MS.gene44331.t1 |
| chr5.4 | CDS | 23641757 | 23641882 | 23641757 | ID=cds.MS.gene44331.t1;Parent=MS.gene44331.t1 |
| chr5.4 | exon | 23642077 | 23642203 | 23642077 | ID=MS.gene44331.t1.exon4;Parent=MS.gene44331.t1 |
| chr5.4 | CDS | 23642077 | 23642203 | 23642077 | ID=cds.MS.gene44331.t1;Parent=MS.gene44331.t1 |
| Gene Sequence |
| Protein sequence |
