AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44332


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44332.t1 MTR_5g033260 91.623 382 32 0 1 382 1 382 0.0 730
MS.gene44332.t1 MTR_8g432640 84.031 382 61 0 1 382 1 382 0.0 674
MS.gene44332.t1 MTR_3g088925 52.116 378 179 2 3 379 4 380 2.07e-140 405
MS.gene44332.t1 MTR_3g088945 51.587 378 181 2 3 379 4 380 4.40e-139 402
MS.gene44332.t1 MTR_7g107690 49.866 373 187 0 2 374 4 376 1.99e-138 400
MS.gene44332.t1 MTR_3g088955 51.323 378 182 2 3 379 4 380 3.16e-138 400
MS.gene44332.t1 MTR_7g107710 50.667 375 183 2 1 374 1 374 3.81e-135 391
MS.gene44332.t1 MTR_4g051642 51.587 378 180 3 3 379 4 379 2.21e-134 390
MS.gene44332.t1 MTR_3g109520 46.113 373 195 2 7 374 40 411 5.49e-122 359
MS.gene44332.t1 MTR_1g069275 47.507 381 184 6 7 378 26 399 3.99e-119 352
MS.gene44332.t1 MTR_7g099330 46.419 377 190 4 7 378 25 394 2.06e-118 350
MS.gene44332.t1 MTR_1g008380 44.297 377 203 3 7 378 43 417 5.10e-118 349
MS.gene44332.t1 MTR_6g086870 45.669 381 196 4 7 378 21 399 5.10e-118 348
MS.gene44332.t1 MTR_1g046230 45.573 384 198 6 7 382 25 405 3.55e-117 347
MS.gene44332.t1 MTR_1g011630 44.562 377 198 5 7 378 17 387 2.02e-115 342
MS.gene44332.t1 MTR_3g096030 74.725 182 22 1 1 182 1 158 1.99e-91 271
MS.gene44332.t1 MTR_7g099160 44.118 306 159 4 78 378 217 515 2.84e-83 263
MS.gene44332.t1 MTR_3g096020 52.212 113 16 3 212 323 1 76 6.93e-23 100
MS.gene44332.t1 MTR_2g450310 24.538 379 215 13 3 316 2 374 1.94e-14 75.1
MS.gene44332.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 7.53e-13 68.6
MS.gene44332.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 1.18e-12 68.6
MS.gene44332.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 1.97e-12 68.6
MS.gene44332.t1 MTR_8g037880 23.874 222 142 5 6 202 4 223 3.08e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44332.t1 AT1G48910 56.720 372 161 0 3 374 2 373 7.86e-157 446
MS.gene44332.t1 AT1G21430 51.206 373 177 4 6 376 9 378 4.81e-133 386
MS.gene44332.t1 AT1G04610 47.606 376 187 5 7 374 38 411 2.91e-123 363
MS.gene44332.t1 AT5G11320 46.154 377 190 4 7 378 18 386 1.64e-120 355
MS.gene44332.t1 AT5G25620 46.053 380 195 5 7 379 33 409 1.11e-119 353
MS.gene44332.t1 AT5G25620 46.438 379 193 5 7 378 33 408 2.00e-119 353
MS.gene44332.t1 AT1G04180 45.383 379 197 5 7 379 26 400 4.72e-118 349
MS.gene44332.t1 AT5G43890 45.526 380 198 5 7 379 26 403 4.81e-118 349
MS.gene44332.t1 AT4G28720 44.531 384 203 6 7 382 26 407 3.67e-116 345
MS.gene44332.t1 AT4G13260 44.855 379 203 2 7 380 29 406 6.23e-115 341
MS.gene44332.t1 AT4G32540 44.180 378 198 5 7 378 22 392 2.59e-114 339
MS.gene44332.t1 AT4G32540 44.327 379 198 5 7 378 22 394 3.11e-114 339
MS.gene44332.t1 AT2G33230 44.474 380 200 5 7 378 33 409 4.81e-111 332
MS.gene44332.t1 AT5G11320 46.130 323 162 3 7 324 18 333 3.89e-101 304
MS.gene44332.t1 AT4G13260 47.163 282 144 1 7 283 29 310 7.05e-91 276
MS.gene44332.t1 AT4G13260 41.554 296 167 2 90 380 9 303 2.80e-74 233
MS.gene44332.t1 AT1G62560 25.581 215 127 6 6 190 13 224 1.97e-13 71.6
MS.gene44332.t1 AT1G62560 25.000 228 138 6 6 203 13 237 2.92e-13 71.2
MS.gene44332.t1 AT1G19250 23.298 382 217 17 1 315 8 380 5.61e-12 67.4
MS.gene44332.t1 AT1G65860 22.566 226 145 6 6 203 13 236 7.68e-11 63.9
MS.gene44332.t1 AT1G12140 25.281 178 120 5 36 203 63 237 9.44e-11 63.5
MS.gene44332.t1 AT1G12140 25.281 178 120 5 36 203 63 237 9.44e-11 63.5

Find 100 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGATTTATCGTCCCAAAT+TGG 0.218572 5.4:+23654171 MS.gene44332:CDS
GTATTGAAGGAATTGGTATT+TGG 0.229329 5.4:-23652302 None:intergenic
CATTTGTAAAGGTCCCAATT+TGG 0.241094 5.4:-23654185 None:intergenic
AATTATGAAAATTAAAAGTT+TGG 0.248270 5.4:-23655004 None:intergenic
ATTGTAGGTGCTGGTCCTTC+TGG 0.274701 5.4:+23652100 MS.gene44332:CDS
GGATGCTATCATTACTTTAT+CGG 0.293233 5.4:+23654117 MS.gene44332:CDS
AGGTAGGTTGGGCCTGAGGG+TGG 0.310193 5.4:-23652277 None:intergenic
TTACAAATGAAGAATCTTAC+AGG 0.315816 5.4:+23654199 MS.gene44332:CDS
ATGATTGTTGTGCTTCTCTT+TGG 0.323198 5.4:+23652182 MS.gene44332:CDS
ATATGAATCAAAAGAGGTTT+TGG 0.328118 5.4:+23652582 MS.gene44332:CDS
CTGAGGGTGGGTGAGGCATG+AGG 0.329207 5.4:-23652264 None:intergenic
GGACTTCGAACGACAATAGA+TGG 0.338818 5.4:-23652667 None:intergenic
TTATCGGCAAAACTAAAATA+TGG 0.345197 5.4:+23654133 MS.gene44332:CDS
GAACACTATAGAAGGGATAT+TGG 0.347771 5.4:+23652429 MS.gene44332:CDS
ATTTGTAAAGGTCCCAATTT+GGG 0.347806 5.4:-23654184 None:intergenic
AGGCTTGTGGGGAGTCAAAA+TGG 0.349213 5.4:+23654953 MS.gene44332:CDS
TGTCTATGTATTGAAGGAAT+TGG 0.353488 5.4:-23652309 None:intergenic
TGGAACTGTCGAAAAGATTA+AGG 0.360924 5.4:+23654243 MS.gene44332:CDS
GGCTACAAAAGCATAACTAA+TGG 0.367252 5.4:+23654625 MS.gene44332:CDS
GAAACAAAGAACACTATAGA+AGG 0.371049 5.4:+23652421 MS.gene44332:CDS
CACTCTAAATATTACAAATC+TGG 0.373703 5.4:+23652553 MS.gene44332:CDS
TTATTCAGTCCAGGCACATT+AGG 0.380732 5.4:-23652511 None:intergenic
GTTGGGCCTGAGGGTGGGTG+AGG 0.384881 5.4:-23652271 None:intergenic
ATCTATTGTCGTTCGAAGTC+CGG 0.385488 5.4:+23652669 MS.gene44332:CDS
GATTAAGGAGGGATCTATAA+AGG 0.408201 5.4:+23654258 MS.gene44332:CDS
GGGATTTATCGTCCCAAATT+GGG 0.412423 5.4:+23654172 MS.gene44332:CDS
CATATTTGTCTATGTATTGA+AGG 0.420134 5.4:-23652315 None:intergenic
CATAACTAATGGGTGGCTTA+AGG 0.420449 5.4:+23654636 MS.gene44332:CDS
GAATCCACAGTTGTAATTGT+AGG 0.425297 5.4:+23652085 MS.gene44332:CDS
GGGACGATAAATCCCGTACT+TGG 0.427951 5.4:-23654164 None:intergenic
ATGGGTTAGCACCCGAGTTA+TGG 0.434610 5.4:-23652648 None:intergenic
ACTCAACTGTGCGACAATAG+TGG 0.435776 5.4:-23652360 None:intergenic
CTCATGCCTCACCCACCCTC+AGG 0.443220 5.4:+23652265 MS.gene44332:CDS
ATTGTTGTGCTTCTCTTTGG+AGG 0.448516 5.4:+23652185 MS.gene44332:CDS
AAATATGCTCTTAATGAGAA+AGG 0.450742 5.4:+23654858 MS.gene44332:CDS
GTAAGATTCTTCATTTGTAA+AGG 0.451233 5.4:-23654196 None:intergenic
ATAGCATCCACAATAGCAAC+TGG 0.454424 5.4:-23654103 None:intergenic
GCTACAAAAGCATAACTAAT+GGG 0.458461 5.4:+23654626 MS.gene44332:CDS
GGTATTTGGATAGGTAGGTT+GGG 0.467624 5.4:-23652288 None:intergenic
TATGGTGATTTGTCCAAGTA+CGG 0.467911 5.4:+23654151 MS.gene44332:CDS
GGATAGGTAGGTTGGGCCTG+AGG 0.468970 5.4:-23652281 None:intergenic
AATATGCTCTTAATGAGAAA+GGG 0.471517 5.4:+23654859 MS.gene44332:CDS
AGGGATATTGGAAGTTTATG+AGG 0.472958 5.4:+23652441 MS.gene44332:CDS
TGAGGGTGGGTGAGGCATGA+GGG 0.473573 5.4:-23652263 None:intergenic
CTCAACTGTGCGACAATAGT+GGG 0.478673 5.4:-23652359 None:intergenic
ACTGTCAAGGAGAGGCTTGT+GGG 0.478876 5.4:+23654941 MS.gene44332:CDS
AAGTTTCTTGTGATCGCCAC+TGG 0.479220 5.4:+23652466 MS.gene44332:CDS
ATTTCACCATTCGCATCCCT+TGG 0.479361 5.4:-23654075 None:intergenic
GAATTGGTATTTGGATAGGT+AGG 0.480246 5.4:-23652293 None:intergenic
GGTTATATTCCTAATGTGCC+TGG 0.488785 5.4:+23652502 MS.gene44332:CDS
GATAGGTAGGTTGGGCCTGA+GGG 0.490086 5.4:-23652280 None:intergenic
GAAGGAATTGGTATTTGGAT+AGG 0.493929 5.4:-23652297 None:intergenic
GGTAGGTTGGGCCTGAGGGT+GGG 0.501182 5.4:-23652276 None:intergenic
ATGATGAGGTTAGAAACAAA+TGG 0.503942 5.4:+23652392 MS.gene44332:CDS
TGGTATTTGGATAGGTAGGT+TGG 0.507880 5.4:-23652289 None:intergenic
AAAATGCTTACCCGAACCAT+TGG 0.508101 5.4:+23654889 MS.gene44332:CDS
CCTTCAAAGTTATTCAGTCC+AGG 0.511343 5.4:-23652520 None:intergenic
GATCATGGATTGTACTGTGC+AGG 0.519262 5.4:+23654918 MS.gene44332:CDS
AAGTCCGCAGTTATTGATGT+TGG 0.521748 5.4:+23654223 MS.gene44332:CDS
CCTGGACTGAATAACTTTGA+AGG 0.524426 5.4:+23652520 MS.gene44332:CDS
TTCAAAATATGAATCAAAAG+AGG 0.525909 5.4:+23652576 MS.gene44332:CDS
TGCTTATGATCTCCATAACT+CGG 0.526560 5.4:+23652636 MS.gene44332:CDS
ATGGTGATTTGTCCAAGTAC+GGG 0.532353 5.4:+23654152 MS.gene44332:CDS
GACTGTCAAGGAGAGGCTTG+TGG 0.533040 5.4:+23654940 MS.gene44332:CDS
ACAGTTGTAATTGTAGGTGC+TGG 0.535522 5.4:+23652091 MS.gene44332:CDS
GTAGTTGGGTGTGGTAACTC+AGG 0.547445 5.4:+23652604 MS.gene44332:CDS
GAGGGTGGGTGAGGCATGAG+GGG 0.557145 5.4:-23652262 None:intergenic
TCAATGCTAGTGATATATGA+AGG 0.561811 5.4:-23654538 None:intergenic
GCAGAAATTGCTAGGCCAGA+AGG 0.563796 5.4:-23652115 None:intergenic
TTAGGCAAGCAGAAATTGCT+AGG 0.575098 5.4:-23652123 None:intergenic
TGCTTACCCGAACCATTGGA+AGG 0.577260 5.4:+23654893 MS.gene44332:CDS
ATGAGGTTAGAAACAAATGG+AGG 0.583201 5.4:+23652395 MS.gene44332:CDS
CTGTCAAGGAGAGGCTTGTG+GGG 0.591890 5.4:+23654942 MS.gene44332:CDS
TGGGTGTGGTAACTCAGGAA+TGG 0.594724 5.4:+23652609 MS.gene44332:CDS
CTTACCCGAACCATTGGAAG+GGG 0.603003 5.4:+23654895 MS.gene44332:CDS
GCTTATGATCTCCATAACTC+GGG 0.611693 5.4:+23652637 MS.gene44332:CDS
AAACAAAGAACACTATAGAA+GGG 0.614313 5.4:+23652422 MS.gene44332:CDS
GCTTACCCGAACCATTGGAA+GGG 0.616793 5.4:+23654894 MS.gene44332:CDS
TGTACTGTGCAGGACTGTCA+AGG 0.617174 5.4:+23654928 MS.gene44332:CDS
AACTGTCGAAAAGATTAAGG+AGG 0.618608 5.4:+23654246 MS.gene44332:CDS
TGATCGTTTAAACCTCCACT+TGG 0.624802 5.4:+23652219 MS.gene44332:CDS
GTAGAGAAATGATTCACCAA+GGG 0.627830 5.4:+23654059 MS.gene44332:CDS
ACTGAATAACTTTGAAGGAG+AGG 0.632240 5.4:+23652525 MS.gene44332:CDS
ACTGTCGAAAAGATTAAGGA+GGG 0.634444 5.4:+23654247 MS.gene44332:CDS
GCCACTGGTGAAAATAGTGA+AGG 0.638559 5.4:+23652481 MS.gene44332:CDS
AGCAAAACTCACTAGCCAAG+TGG 0.645422 5.4:-23652234 None:intergenic
TGAGGTTAGAAACAAATGGA+GGG 0.645489 5.4:+23652396 MS.gene44332:CDS
GAATAACTTTGAAGGAGAGG+TGG 0.646286 5.4:+23652528 MS.gene44332:CDS
TGAGTCTGCTAAGTATGATG+AGG 0.653647 5.4:+23652378 MS.gene44332:CDS
GGATGCAGAGTCAATTGCTG+AGG 0.658304 5.4:+23654974 MS.gene44332:CDS
GACTTCGAACGACAATAGAT+GGG 0.661642 5.4:-23652666 None:intergenic
ACAAAAGCATAACTAATGGG+TGG 0.664351 5.4:+23654629 MS.gene44332:CDS
AGCACCTACAATTACAACTG+TGG 0.666119 5.4:-23652089 None:intergenic
GATTCACCAAGGGATGCGAA+TGG 0.671019 5.4:+23654069 MS.gene44332:CDS
AGTAGAGAAATGATTCACCA+AGG 0.673155 5.4:+23654058 MS.gene44332:CDS
AAAACTCACTAGCCAAGTGG+AGG 0.678012 5.4:-23652231 None:intergenic
TGTGCAGGACTGTCAAGGAG+AGG 0.680971 5.4:+23654933 MS.gene44332:CDS
TCAACTGTGCGACAATAGTG+GGG 0.708232 5.4:-23652358 None:intergenic
TTACCCGAACCATTGGAAGG+GGG 0.721390 5.4:+23654896 MS.gene44332:CDS
AGTTCCAACATCAATAACTG+CGG 0.739531 5.4:-23654227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr5.4:23653305-23653286 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr5.4:23653306-23653287 None:intergenic 0.0%
!! AATTAGTAAATTATCTATAA+AGG - chr5.4:23654349-23654368 None:intergenic 10.0%
!! AATTATGAAAATTAAAAGTT+TGG - chr5.4:23655007-23655026 None:intergenic 10.0%
!! CAATATAAAAATAATATGTA+TGG + chr5.4:23653963-23653982 MS.gene44332:intron 10.0%
!!! ATCAATATTATACAATATTT+TGG + chr5.4:23653036-23653055 MS.gene44332:intron 10.0%
!! ACATACATACATATATATAT+AGG + chr5.4:23653510-23653529 MS.gene44332:intron 15.0%
!! ATATATTCATCATAAAAACA+GGG + chr5.4:23653794-23653813 MS.gene44332:intron 15.0%
!! CATAATCATAATTAAGATAA+AGG + chr5.4:23654673-23654692 MS.gene44332:intron 15.0%
!! CATACATACATATATATATA+GGG + chr5.4:23653511-23653530 MS.gene44332:intron 15.0%
!! TATATATTCATCATAAAAAC+AGG + chr5.4:23653793-23653812 MS.gene44332:intron 15.0%
!! TATTAATAACTTGAAGAATT+AGG - chr5.4:23654803-23654822 None:intergenic 15.0%
!! TTATAATATGTTCAAAACTA+TGG + chr5.4:23654459-23654478 MS.gene44332:intron 15.0%
!!! AGTTTTTTTTTTAACAATGT+TGG + chr5.4:23653833-23653852 MS.gene44332:intron 15.0%
!! AATGTAAGTTGTATATTGTA+AGG - chr5.4:23654721-23654740 None:intergenic 20.0%
!! AATTTAAATTTGTATACCCA+AGG + chr5.4:23652747-23652766 MS.gene44332:intron 20.0%
!! ACAATTAAATTGTCTATGTA+TGG - chr5.4:23652787-23652806 None:intergenic 20.0%
!! ATATATTGAAAAAGAATTGC+TGG - chr5.4:23652960-23652979 None:intergenic 20.0%
!! ATGTAAGTTGTATATTGTAA+GGG - chr5.4:23654720-23654739 None:intergenic 20.0%
!! GAGTTAGAAATATTATTTAC+CGG - chr5.4:23652691-23652710 None:intergenic 20.0%
!! TTCAAAATATGAATCAAAAG+AGG + chr5.4:23652576-23652595 MS.gene44332:CDS 20.0%
!!! ATCTGAGATTGAATTATTAA+TGG + chr5.4:23653077-23653096 MS.gene44332:intron 20.0%
!!! GGAAGTAAGAATAAATTTTT+TGG + chr5.4:23653119-23653138 MS.gene44332:intron 20.0%
!!! TCTGAGATTGAATTATTAAT+GGG + chr5.4:23653078-23653097 MS.gene44332:intron 20.0%
!!! TTATTTGATGTATTTTTCGA+AGG + chr5.4:23654830-23654849 MS.gene44332:intron 20.0%
!!! TTGTGTGCTTTTTTTTTTAT+TGG + chr5.4:23654757-23654776 MS.gene44332:intron 20.0%
! AAACAAAGAACACTATAGAA+GGG + chr5.4:23652422-23652441 MS.gene44332:CDS 25.0%
! AAATATGCTCTTAATGAGAA+AGG + chr5.4:23654858-23654877 MS.gene44332:CDS 25.0%
! AATAACTTGAAGAATTAGGA+AGG - chr5.4:23654799-23654818 None:intergenic 25.0%
! AATATGCTCTTAATGAGAAA+GGG + chr5.4:23654859-23654878 MS.gene44332:CDS 25.0%
! ATAACTTGAAGAATTAGGAA+GGG - chr5.4:23654798-23654817 None:intergenic 25.0%
! CACTCTAAATATTACAAATC+TGG + chr5.4:23652553-23652572 MS.gene44332:CDS 25.0%
! CATATTTGTCTATGTATTGA+AGG - chr5.4:23652318-23652337 None:intergenic 25.0%
! CTGAGATTGAATTATTAATG+GGG + chr5.4:23653079-23653098 MS.gene44332:intron 25.0%
! GAGAAAAAGAAAGTTGTATT+TGG + chr5.4:23654559-23654578 MS.gene44332:CDS 25.0%
! GTAAGATTCTTCATTTGTAA+AGG - chr5.4:23654199-23654218 None:intergenic 25.0%
! TTACAAATGAAGAATCTTAC+AGG + chr5.4:23654199-23654218 MS.gene44332:CDS 25.0%
! TTATCGGCAAAACTAAAATA+TGG + chr5.4:23654133-23654152 MS.gene44332:CDS 25.0%
!! ATATGAATCAAAAGAGGTTT+TGG + chr5.4:23652582-23652601 MS.gene44332:CDS 25.0%
!! TAAAGACAATATGTGTTTTG+CGG + chr5.4:23653992-23654011 MS.gene44332:intron 25.0%
!!! TTTTTTTAGACCTATCTAGT+TGG + chr5.4:23652993-23653012 MS.gene44332:intron 25.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5.4:23653607-23653626 None:intergenic 30.0%
ATGATGAGGTTAGAAACAAA+TGG + chr5.4:23652392-23652411 MS.gene44332:CDS 30.0%
ATGTCACACACTTACTTTAA+TGG - chr5.4:23654490-23654509 None:intergenic 30.0%
ATTTGTAAAGGTCCCAATTT+GGG - chr5.4:23654187-23654206 None:intergenic 30.0%
GAAACAAAGAACACTATAGA+AGG + chr5.4:23652421-23652440 MS.gene44332:CDS 30.0%
GGAGATTTATATGTATCCTT+GGG - chr5.4:23652766-23652785 None:intergenic 30.0%
GGATGCTATCATTACTTTAT+CGG + chr5.4:23654117-23654136 MS.gene44332:CDS 30.0%
GTATTGAAGGAATTGGTATT+TGG - chr5.4:23652305-23652324 None:intergenic 30.0%
TCAATGCTAGTGATATATGA+AGG - chr5.4:23654541-23654560 None:intergenic 30.0%
TGGAGATTTATATGTATCCT+TGG - chr5.4:23652767-23652786 None:intergenic 30.0%
TGTCTATGTATTGAAGGAAT+TGG - chr5.4:23652312-23652331 None:intergenic 30.0%
TGTGTGACATAACTTTGATT+TGG + chr5.4:23654500-23654519 MS.gene44332:intron 30.0%
TTATAGATGTCCAACTAGAT+AGG - chr5.4:23653006-23653025 None:intergenic 30.0%
! GCTACAAAAGCATAACTAAT+GGG + chr5.4:23654626-23654645 MS.gene44332:CDS 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5.4:23653601-23653620 MS.gene44332:intron 30.0%
!! ATATTTTCCAGTTGCTATTG+TGG + chr5.4:23654096-23654115 MS.gene44332:CDS 30.0%
!!! ATATTTTGGTGTGTTAACCA+AGG + chr5.4:23653050-23653069 MS.gene44332:intron 30.0%
!!! GGGGCTAATTTTTTTTTTGA+AGG + chr5.4:23653098-23653117 MS.gene44332:intron 30.0%
!!! TATTTTGGTGTGTTAACCAA+GGG + chr5.4:23653051-23653070 MS.gene44332:intron 30.0%
AACTGTCGAAAAGATTAAGG+AGG + chr5.4:23654246-23654265 MS.gene44332:CDS 35.0%
ACTGTCGAAAAGATTAAGGA+GGG + chr5.4:23654247-23654266 MS.gene44332:CDS 35.0%
AGGGATATTGGAAGTTTATG+AGG + chr5.4:23652441-23652460 MS.gene44332:CDS 35.0%
AGTAGAGAAATGATTCACCA+AGG + chr5.4:23654058-23654077 MS.gene44332:CDS 35.0%
AGTTCCAACATCAATAACTG+CGG - chr5.4:23654230-23654249 None:intergenic 35.0%
ATATATGAAGGAACAACCTG+TGG - chr5.4:23654529-23654548 None:intergenic 35.0%
ATGAGGTTAGAAACAAATGG+AGG + chr5.4:23652395-23652414 MS.gene44332:CDS 35.0%
ATGATTGTTGTGCTTCTCTT+TGG + chr5.4:23652182-23652201 MS.gene44332:CDS 35.0%
ATTAATCATCTACACACACG+AGG - chr5.4:23654304-23654323 None:intergenic 35.0%
CATTTGTAAAGGTCCCAATT+TGG - chr5.4:23654188-23654207 None:intergenic 35.0%
CTAAAAGACACCTTCACAAA+AGG - chr5.4:23653552-23653571 None:intergenic 35.0%
GAACACTATAGAAGGGATAT+TGG + chr5.4:23652429-23652448 MS.gene44332:CDS 35.0%
GAAGGAATTGGTATTTGGAT+AGG - chr5.4:23652300-23652319 None:intergenic 35.0%
GAATCCACAGTTGTAATTGT+AGG + chr5.4:23652085-23652104 MS.gene44332:CDS 35.0%
GAATTGGTATTTGGATAGGT+AGG - chr5.4:23652296-23652315 None:intergenic 35.0%
GATTAAGGAGGGATCTATAA+AGG + chr5.4:23654258-23654277 MS.gene44332:CDS 35.0%
GTAGAGAAATGATTCACCAA+GGG + chr5.4:23654059-23654078 MS.gene44332:CDS 35.0%
TGAGGTTAGAAACAAATGGA+GGG + chr5.4:23652396-23652415 MS.gene44332:CDS 35.0%
TGCTTATGATCTCCATAACT+CGG + chr5.4:23652636-23652655 MS.gene44332:CDS 35.0%
TGGAACTGTCGAAAAGATTA+AGG + chr5.4:23654243-23654262 MS.gene44332:CDS 35.0%
! ACAAAAGCATAACTAATGGG+TGG + chr5.4:23654629-23654648 MS.gene44332:CDS 35.0%
! ACTGAATAACTTTGAAGGAG+AGG + chr5.4:23652525-23652544 MS.gene44332:CDS 35.0%
! GGCTACAAAAGCATAACTAA+TGG + chr5.4:23654625-23654644 MS.gene44332:CDS 35.0%
! TATGGTGATTTGTCCAAGTA+CGG + chr5.4:23654151-23654170 MS.gene44332:CDS 35.0%
!! AGTGGGGTTTTATGTTGAAA+TGG - chr5.4:23652345-23652364 None:intergenic 35.0%
!! CAAAAGAGGTTTTGGTAGTT+GGG + chr5.4:23652590-23652609 MS.gene44332:CDS 35.0%
!! TCAAAAGAGGTTTTGGTAGT+TGG + chr5.4:23652589-23652608 MS.gene44332:CDS 35.0%
AAAATGCTTACCCGAACCAT+TGG + chr5.4:23654889-23654908 MS.gene44332:CDS 40.0%
AAAGTGCAAATCACACCTTG+AGG + chr5.4:23653649-23653668 MS.gene44332:intron 40.0%
AAGTCCGCAGTTATTGATGT+TGG + chr5.4:23654223-23654242 MS.gene44332:CDS 40.0%
ACAGTTGTAATTGTAGGTGC+TGG + chr5.4:23652091-23652110 MS.gene44332:CDS 40.0%
AGCACCTACAATTACAACTG+TGG - chr5.4:23652092-23652111 None:intergenic 40.0%
ATAGCATCCACAATAGCAAC+TGG - chr5.4:23654106-23654125 None:intergenic 40.0%
ATCTATTGTCGTTCGAAGTC+CGG + chr5.4:23652669-23652688 MS.gene44332:CDS 40.0%
ATTGTTGTGCTTCTCTTTGG+AGG + chr5.4:23652185-23652204 MS.gene44332:CDS 40.0%
CCTGGACTGAATAACTTTGA+AGG + chr5.4:23652520-23652539 MS.gene44332:CDS 40.0%
CCTTCAAAGTTATTCAGTCC+AGG - chr5.4:23652523-23652542 None:intergenic 40.0%
GACTTCGAACGACAATAGAT+GGG - chr5.4:23652669-23652688 None:intergenic 40.0%
GCTTATGATCTCCATAACTC+GGG + chr5.4:23652637-23652656 MS.gene44332:CDS 40.0%
GGGATTTATCGTCCCAAATT+GGG + chr5.4:23654172-23654191 MS.gene44332:CDS 40.0%
GGTATTTGGATAGGTAGGTT+GGG - chr5.4:23652291-23652310 None:intergenic 40.0%
GGTTATATTCCTAATGTGCC+TGG + chr5.4:23652502-23652521 MS.gene44332:CDS 40.0%
TGAGTCTGCTAAGTATGATG+AGG + chr5.4:23652378-23652397 MS.gene44332:CDS 40.0%
TGATCGTTTAAACCTCCACT+TGG + chr5.4:23652219-23652238 MS.gene44332:CDS 40.0%
TGCTAAAAGACACCACCAAA+GGG + chr5.4:23653679-23653698 MS.gene44332:intron 40.0%
TGGTATTTGGATAGGTAGGT+TGG - chr5.4:23652292-23652311 None:intergenic 40.0%
TTAGGCAAGCAGAAATTGCT+AGG - chr5.4:23652126-23652145 None:intergenic 40.0%
TTATTCAGTCCAGGCACATT+AGG - chr5.4:23652514-23652533 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG + chr5.4:23653678-23653697 MS.gene44332:intron 40.0%
! ACCTTCACTATTTTCACCAG+TGG - chr5.4:23652485-23652504 None:intergenic 40.0%
! ATGGTGATTTGTCCAAGTAC+GGG + chr5.4:23654152-23654171 MS.gene44332:CDS 40.0%
! CATAACTAATGGGTGGCTTA+AGG + chr5.4:23654636-23654655 MS.gene44332:CDS 40.0%
! CTAGAAGACACCTTTTGTGA+AGG + chr5.4:23653539-23653558 MS.gene44332:intron 40.0%
! GAATAACTTTGAAGGAGAGG+TGG + chr5.4:23652528-23652547 MS.gene44332:CDS 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - chr5.4:23653667-23653686 None:intergenic 40.0%
!! AACTTTGATTTGGATGCCAC+AGG + chr5.4:23654510-23654529 MS.gene44332:intron 40.0%
!! GAGAGATGCAGTTTTGTGTT+AGG - chr5.4:23652144-23652163 None:intergenic 40.0%
!!! TGGTTCGGGTAAGCATTTTT+TGG - chr5.4:23654888-23654907 None:intergenic 40.0%
AAAACTCACTAGCCAAGTGG+AGG - chr5.4:23652234-23652253 None:intergenic 45.0%
AAGTTTCTTGTGATCGCCAC+TGG + chr5.4:23652466-23652485 MS.gene44332:CDS 45.0%
ACTCAACTGTGCGACAATAG+TGG - chr5.4:23652363-23652382 None:intergenic 45.0%
AGCAAAACTCACTAGCCAAG+TGG - chr5.4:23652237-23652256 None:intergenic 45.0%
ATTTCACCATTCGCATCCCT+TGG - chr5.4:23654078-23654097 None:intergenic 45.0%
CGGGATTTATCGTCCCAAAT+TGG + chr5.4:23654171-23654190 MS.gene44332:CDS 45.0%
CTCAACTGTGCGACAATAGT+GGG - chr5.4:23652362-23652381 None:intergenic 45.0%
GCCACTGGTGAAAATAGTGA+AGG + chr5.4:23652481-23652500 MS.gene44332:CDS 45.0%
GGACTTCGAACGACAATAGA+TGG - chr5.4:23652670-23652689 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr5.4:23653682-23653701 MS.gene44332:intron 45.0%
TCAACTGTGCGACAATAGTG+GGG - chr5.4:23652361-23652380 None:intergenic 45.0%
! GATCATGGATTGTACTGTGC+AGG + chr5.4:23654918-23654937 MS.gene44332:CDS 45.0%
! TTTGGTGTGTTAACCAAGGG+CGG + chr5.4:23653054-23653073 MS.gene44332:intron 45.0%
!! TATTCAAAAAATAATAATAA+TGG - chr5.4:23653874-23653893 None:intergenic 5.0%
AACCATTGGAAGGGGGATCA+TGG + chr5.4:23654903-23654922 MS.gene44332:CDS 50.0%
ACTGTCAAGGAGAGGCTTGT+GGG + chr5.4:23654941-23654960 MS.gene44332:CDS 50.0%
AGGCTTGTGGGGAGTCAAAA+TGG + chr5.4:23654953-23654972 MS.gene44332:CDS 50.0%
ATCCATGATCCCCCTTCCAA+TGG - chr5.4:23654908-23654927 None:intergenic 50.0%
CTTACCCGAACCATTGGAAG+GGG + chr5.4:23654895-23654914 MS.gene44332:CDS 50.0%
GATTCACCAAGGGATGCGAA+TGG + chr5.4:23654069-23654088 MS.gene44332:CDS 50.0%
GCAGAAATTGCTAGGCCAGA+AGG - chr5.4:23652118-23652137 None:intergenic 50.0%
GCTTACCCGAACCATTGGAA+GGG + chr5.4:23654894-23654913 MS.gene44332:CDS 50.0%
GGATGCAGAGTCAATTGCTG+AGG + chr5.4:23654974-23654993 MS.gene44332:CDS 50.0%
GGGACGATAAATCCCGTACT+TGG - chr5.4:23654167-23654186 None:intergenic 50.0%
GTAGTTGGGTGTGGTAACTC+AGG + chr5.4:23652604-23652623 MS.gene44332:CDS 50.0%
TCTTGCTACAAGCCACCCTT+TGG - chr5.4:23653697-23653716 None:intergenic 50.0%
TGATCCCCCTTCCAATGGTT+CGG - chr5.4:23654903-23654922 None:intergenic 50.0%
TGCTTACCCGAACCATTGGA+AGG + chr5.4:23654893-23654912 MS.gene44332:CDS 50.0%
TGGGTGTGGTAACTCAGGAA+TGG + chr5.4:23652609-23652628 MS.gene44332:CDS 50.0%
TGTACTGTGCAGGACTGTCA+AGG + chr5.4:23654928-23654947 MS.gene44332:CDS 50.0%
TTACCCGAACCATTGGAAGG+GGG + chr5.4:23654896-23654915 MS.gene44332:CDS 50.0%
TTCAATCTCAGATCCGCCCT+TGG - chr5.4:23653070-23653089 None:intergenic 50.0%
! GATGCGATCGTTTTCGCAAC+TGG + chr5.4:23654604-23654623 MS.gene44332:CDS 50.0%
!! ATGGGTTAGCACCCGAGTTA+TGG - chr5.4:23652651-23652670 None:intergenic 50.0%
!! ATTGTAGGTGCTGGTCCTTC+TGG + chr5.4:23652100-23652119 MS.gene44332:CDS 50.0%
!! GAGGTTTTGGTAGTTGGGTG+TGG + chr5.4:23652595-23652614 MS.gene44332:CDS 50.0%
CTGTCAAGGAGAGGCTTGTG+GGG + chr5.4:23654942-23654961 MS.gene44332:CDS 55.0%
GACTGTCAAGGAGAGGCTTG+TGG + chr5.4:23654940-23654959 MS.gene44332:CDS 55.0%
GATCCCCCTTCCAATGGTTC+GGG - chr5.4:23654902-23654921 None:intergenic 55.0%
TGCTACAAGCCACCCTTTGG+TGG - chr5.4:23653694-23653713 None:intergenic 55.0%
TGTGCAGGACTGTCAAGGAG+AGG + chr5.4:23654933-23654952 MS.gene44332:CDS 55.0%
! GATAGGTAGGTTGGGCCTGA+GGG - chr5.4:23652283-23652302 None:intergenic 55.0%
TGAGGGTGGGTGAGGCATGA+GGG - chr5.4:23652266-23652285 None:intergenic 60.0%
! GGATAGGTAGGTTGGGCCTG+AGG - chr5.4:23652284-23652303 None:intergenic 60.0%
CTCATGCCTCACCCACCCTC+AGG + chr5.4:23652265-23652284 MS.gene44332:CDS 65.0%
CTGAGGGTGGGTGAGGCATG+AGG - chr5.4:23652267-23652286 None:intergenic 65.0%
GAGGGTGGGTGAGGCATGAG+GGG - chr5.4:23652265-23652284 None:intergenic 65.0%
! AGGTAGGTTGGGCCTGAGGG+TGG - chr5.4:23652280-23652299 None:intergenic 65.0%
! GGTAGGTTGGGCCTGAGGGT+GGG - chr5.4:23652279-23652298 None:intergenic 65.0%
GTTGGGCCTGAGGGTGGGTG+AGG - chr5.4:23652274-23652293 None:intergenic 70.0%
! TGCGCGCGCGCGCGCGTGTG+TGG - chr5.4:23653247-23653266 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 23652079 23655028 23652079 ID=MS.gene44332
chr5.4 mRNA 23652079 23655028 23652079 ID=MS.gene44332.t1;Parent=MS.gene44332
chr5.4 exon 23652079 23652690 23652079 ID=MS.gene44332.t1.exon1;Parent=MS.gene44332.t1
chr5.4 CDS 23652079 23652690 23652079 ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1
chr5.4 exon 23654046 23654279 23654046 ID=MS.gene44332.t1.exon2;Parent=MS.gene44332.t1
chr5.4 CDS 23654046 23654279 23654046 ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1
chr5.4 exon 23654532 23654657 23654532 ID=MS.gene44332.t1.exon3;Parent=MS.gene44332.t1
chr5.4 CDS 23654532 23654657 23654532 ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1
chr5.4 exon 23654852 23655028 23654852 ID=MS.gene44332.t1.exon4;Parent=MS.gene44332.t1
chr5.4 CDS 23654852 23655028 23654852 ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1
Gene Sequence

>MS.gene44332

ATGCAAGAATCCACAGTTGTAATTGTAGGTGCTGGTCCTTCTGGCCTAGCAATTTCTGCTTGCCTAACACAAAACTGCATCTCTCATATCATGCTCGAAAAAGATGATTGTTGTGCTTCTCTTTGGAGGAAAAATGCGTATGATCGTTTAAACCTCCACTTGGCTAGTGAGTTTTGCTCTTTACCCCTCATGCCTCACCCACCCTCAGGCCCAACCTACCTATCCAAATACCAATTCCTTCAATACATAGACAAATATGTCGACCATTTCAACATAAAACCCCACTATTGTCGCACAGTTGAGTCTGCTAAGTATGATGAGGTTAGAAACAAATGGAGGGTTGAAACAAAGAACACTATAGAAGGGATATTGGAAGTTTATGAGGCGAAGTTTCTTGTGATCGCCACTGGTGAAAATAGTGAAGGTTATATTCCTAATGTGCCTGGACTGAATAACTTTGAAGGAGAGGTGGTACACTCTAAATATTACAAATCTGGTTCAAAATATGAATCAAAAGAGGTTTTGGTAGTTGGGTGTGGTAACTCAGGAATGGAGATTGCTTATGATCTCCATAACTCGGGTGCTAACCCATCTATTGTCGTTCGAAGTCCGGTAAATAATATTTCTAACTCACTCTTTTCATGCAACAATATCATTTAGAATGAAAGAATTTAAATTTGTATACCCAAGGATACATATAAATCTCCATACATAGACAATTTAATTGTTTTTGAGAGAACATAGACAATTTATTTATTTATTTATTTAAAAATTTAATGACAGATTAATTTTATGAAATTCTCGATAAGATTTTTTTTAATCTAGCAATGTATGTATAATTTCTTGATTCAATGTGTCGATAATTCATTAATATAATTCCAGCAATTCTTTTTCAATATATTTTTTTGTTGAGATTTTTTTAGACCTATCTAGTTGGACATCTATAACTTTCGACATATCAATATTATACAATATTTTGGTGTGTTAACCAAGGGCGGATCTGAGATTGAATTATTAATGGGGCTAATTTTTTTTTTGAAGGAAGTAAGAATAAATTTTTTGGAGAAATAAATATTAATAGATAATGCTCAACATATGTTACAAAATCTTATCTTAGAACTCGTGCGTGTGCACGCGTACACATTCAAGCACACGCACGCGCGCGCCACACACGCGCGCGCGCGCGCACACACACACACACACACACATATATATATATATATATATATGTATATATATATATGTATATATATATATATATATGTGTGTGTGTGTGTGTATGTATGTATGTATATACATACATACATACACACACACACACACACACACACACACACACACATATATATATATATATACATATATATATATATATATATATATATATATATATATATATACACACACACACACACACATACATACATACAGACATACATACATATATATATAGGGTTTTGCTAGAAGACACCTTTTGTGAAGGTGTCTTTTAGCAAGTTACTCTATGAGCATTTGCGAAAAGACACCAACTTACTTTTATGAAGGTGTCTTTTAGCAAAGTTATAACTAAAAAGTGCAAATCACACCTTGAGGTGTGACTTGCTAAAAGACACCACCAAAGGGTGGCTTGTAGCAAGACCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCATCATAAAAACAGGGATTCAGTTGACTCGATAGTTTTTTTTTTAACAATGTTGGCTCGATAGTTGAACTCCATTATTATTATTTTTTGAATAAAGTTGAACTACATTCTGTTGATATTATTTTTCTTTAAAAATAAATTATGTTTTTATTATTTGTCAAATCAATATAAAAATAATATGTATGGATAGTGTAAAGACAATATGTGTTTTGCGGTATTAATTGTTTAATTTTTTTTTTTTTTTAGTTTCATGTCTTCAGTAGAGAAATGATTCACCAAGGGATGCGAATGGTGAAATATTTTCCAGTTGCTATTGTGGATGCTATCATTACTTTATCGGCAAAACTAAAATATGGTGATTTGTCCAAGTACGGGATTTATCGTCCCAAATTGGGACCTTTACAAATGAAGAATCTTACAGGAAAGTCCGCAGTTATTGATGTTGGAACTGTCGAAAAGATTAAGGAGGGATCTATAAAGGTACTTGATTAGTTATTAATACCTCGTGTGTGTAGATGATTAATTAACAAAAGCTTAATGATTCTTCCTTTATAGATAATTTACTAATTTTGTATAAAATGCAATACTTCTTTTTATCAACACAACTATGAAGTTACTTCATGATATTTATTATTTGTGAAATTTTTATTAAAATTAAATTATAATATGTTCAAAACTATGGCACTTCCATTAAAGTAAGTGTGTGACATAACTTTGATTTGGATGCCACAGGTTGTTCCTTCATATATCACTAGCATTGAGAAAAAGAAAGTTGTATTTGGAAACAACATCAAAAAAGAGTTCGATGCGATCGTTTTCGCAACTGGCTACAAAAGCATAACTAATGGGTGGCTTAAGGTATATGTCATAAATCATAATCATAATTAAGATAAAGGAAGAAAAATTGATGATCTTCTCCCTTACAATATACAACTTACATTTCATATTTTAACACTTTTGTGTGCTTTTTTTTTTATTGGACTTTATTTCTCATACCCTTCCTAATTCTTCAAGTTATTAATATATTATATTATTTGATGTATTTTTCGAAGGATTACAAATATGCTCTTAATGAGAAAGGGATGCCAAAAAATGCTTACCCGAACCATTGGAAGGGGGATCATGGATTGTACTGTGCAGGACTGTCAAGGAGAGGCTTGTGGGGAGTCAAAATGGATGCAGAGTCAATTGCTGAGGACATCAACCAAACTTTTAATTTTCATAATTAA

Protein sequence

>MS.gene44332.t1

MQESTVVIVGAGPSGLAISACLTQNCISHIMLEKDDCCASLWRKNAYDRLNLHLASEFCSLPLMPHPPSGPTYLSKYQFLQYIDKYVDHFNIKPHYCRTVESAKYDEVRNKWRVETKNTIEGILEVYEAKFLVIATGENSEGYIPNVPGLNNFEGEVVHSKYYKSGSKYESKEVLVVGCGNSGMEIAYDLHNSGANPSIVVRSPFHVFSREMIHQGMRMVKYFPVAIVDAIITLSAKLKYGDLSKYGIYRPKLGPLQMKNLTGKSAVIDVGTVEKIKEGSIKVVPSYITSIEKKKVVFGNNIKKEFDAIVFATGYKSITNGWLKDYKYALNEKGMPKNAYPNHWKGDHGLYCAGLSRRGLWGVKMDAESIAEDINQTFNFHN