Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44332.t1 | XP_003613143.1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 4.20E-205 | 723.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44332.t1 | Q9FVQ0 | 56.7 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 2.2e-122 | 440.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44332.t1 | G7JYZ1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 3.0e-205 | 723.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene61665 | MS.gene44332 | PPI |
MS.gene94810 | MS.gene44332 | PPI |
MS.gene015953 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene064951 | PPI |
MS.gene09884 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene32792 | PPI |
MS.gene031178 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene059136 | PPI |
MS.gene44332 | MS.gene021474 | PPI |
MS.gene64265 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene53594 | PPI |
MS.gene44332 | MS.gene038029 | PPI |
MS.gene44332 | MS.gene014685 | PPI |
MS.gene56048 | MS.gene44332 | PPI |
MS.gene24021 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene40340 | PPI |
MS.gene059027 | MS.gene44332 | PPI |
MS.gene018590 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene60245 | PPI |
MS.gene23537 | MS.gene44332 | PPI |
MS.gene44332 | MS.gene061851 | PPI |
MS.gene31616 | MS.gene44332 | PPI |
MS.gene51580 | MS.gene44332 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44332.t1 | MTR_5g033260 | 91.623 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 0.0 | 730 |
MS.gene44332.t1 | MTR_8g432640 | 84.031 | 382 | 61 | 0 | 1 | 382 | 1 | 382 | 0.0 | 674 |
MS.gene44332.t1 | MTR_3g088925 | 52.116 | 378 | 179 | 2 | 3 | 379 | 4 | 380 | 2.07e-140 | 405 |
MS.gene44332.t1 | MTR_3g088945 | 51.587 | 378 | 181 | 2 | 3 | 379 | 4 | 380 | 4.40e-139 | 402 |
MS.gene44332.t1 | MTR_7g107690 | 49.866 | 373 | 187 | 0 | 2 | 374 | 4 | 376 | 1.99e-138 | 400 |
MS.gene44332.t1 | MTR_3g088955 | 51.323 | 378 | 182 | 2 | 3 | 379 | 4 | 380 | 3.16e-138 | 400 |
MS.gene44332.t1 | MTR_7g107710 | 50.667 | 375 | 183 | 2 | 1 | 374 | 1 | 374 | 3.81e-135 | 391 |
MS.gene44332.t1 | MTR_4g051642 | 51.587 | 378 | 180 | 3 | 3 | 379 | 4 | 379 | 2.21e-134 | 390 |
MS.gene44332.t1 | MTR_3g109520 | 46.113 | 373 | 195 | 2 | 7 | 374 | 40 | 411 | 5.49e-122 | 359 |
MS.gene44332.t1 | MTR_1g069275 | 47.507 | 381 | 184 | 6 | 7 | 378 | 26 | 399 | 3.99e-119 | 352 |
MS.gene44332.t1 | MTR_7g099330 | 46.419 | 377 | 190 | 4 | 7 | 378 | 25 | 394 | 2.06e-118 | 350 |
MS.gene44332.t1 | MTR_1g008380 | 44.297 | 377 | 203 | 3 | 7 | 378 | 43 | 417 | 5.10e-118 | 349 |
MS.gene44332.t1 | MTR_6g086870 | 45.669 | 381 | 196 | 4 | 7 | 378 | 21 | 399 | 5.10e-118 | 348 |
MS.gene44332.t1 | MTR_1g046230 | 45.573 | 384 | 198 | 6 | 7 | 382 | 25 | 405 | 3.55e-117 | 347 |
MS.gene44332.t1 | MTR_1g011630 | 44.562 | 377 | 198 | 5 | 7 | 378 | 17 | 387 | 2.02e-115 | 342 |
MS.gene44332.t1 | MTR_3g096030 | 74.725 | 182 | 22 | 1 | 1 | 182 | 1 | 158 | 1.99e-91 | 271 |
MS.gene44332.t1 | MTR_7g099160 | 44.118 | 306 | 159 | 4 | 78 | 378 | 217 | 515 | 2.84e-83 | 263 |
MS.gene44332.t1 | MTR_3g096020 | 52.212 | 113 | 16 | 3 | 212 | 323 | 1 | 76 | 6.93e-23 | 100 |
MS.gene44332.t1 | MTR_2g450310 | 24.538 | 379 | 215 | 13 | 3 | 316 | 2 | 374 | 1.94e-14 | 75.1 |
MS.gene44332.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 7.53e-13 | 68.6 |
MS.gene44332.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.18e-12 | 68.6 |
MS.gene44332.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.97e-12 | 68.6 |
MS.gene44332.t1 | MTR_8g037880 | 23.874 | 222 | 142 | 5 | 6 | 202 | 4 | 223 | 3.08e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44332.t1 | AT1G48910 | 56.720 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 7.86e-157 | 446 |
MS.gene44332.t1 | AT1G21430 | 51.206 | 373 | 177 | 4 | 6 | 376 | 9 | 378 | 4.81e-133 | 386 |
MS.gene44332.t1 | AT1G04610 | 47.606 | 376 | 187 | 5 | 7 | 374 | 38 | 411 | 2.91e-123 | 363 |
MS.gene44332.t1 | AT5G11320 | 46.154 | 377 | 190 | 4 | 7 | 378 | 18 | 386 | 1.64e-120 | 355 |
MS.gene44332.t1 | AT5G25620 | 46.053 | 380 | 195 | 5 | 7 | 379 | 33 | 409 | 1.11e-119 | 353 |
MS.gene44332.t1 | AT5G25620 | 46.438 | 379 | 193 | 5 | 7 | 378 | 33 | 408 | 2.00e-119 | 353 |
MS.gene44332.t1 | AT1G04180 | 45.383 | 379 | 197 | 5 | 7 | 379 | 26 | 400 | 4.72e-118 | 349 |
MS.gene44332.t1 | AT5G43890 | 45.526 | 380 | 198 | 5 | 7 | 379 | 26 | 403 | 4.81e-118 | 349 |
MS.gene44332.t1 | AT4G28720 | 44.531 | 384 | 203 | 6 | 7 | 382 | 26 | 407 | 3.67e-116 | 345 |
MS.gene44332.t1 | AT4G13260 | 44.855 | 379 | 203 | 2 | 7 | 380 | 29 | 406 | 6.23e-115 | 341 |
MS.gene44332.t1 | AT4G32540 | 44.180 | 378 | 198 | 5 | 7 | 378 | 22 | 392 | 2.59e-114 | 339 |
MS.gene44332.t1 | AT4G32540 | 44.327 | 379 | 198 | 5 | 7 | 378 | 22 | 394 | 3.11e-114 | 339 |
MS.gene44332.t1 | AT2G33230 | 44.474 | 380 | 200 | 5 | 7 | 378 | 33 | 409 | 4.81e-111 | 332 |
MS.gene44332.t1 | AT5G11320 | 46.130 | 323 | 162 | 3 | 7 | 324 | 18 | 333 | 3.89e-101 | 304 |
MS.gene44332.t1 | AT4G13260 | 47.163 | 282 | 144 | 1 | 7 | 283 | 29 | 310 | 7.05e-91 | 276 |
MS.gene44332.t1 | AT4G13260 | 41.554 | 296 | 167 | 2 | 90 | 380 | 9 | 303 | 2.80e-74 | 233 |
MS.gene44332.t1 | AT1G62560 | 25.581 | 215 | 127 | 6 | 6 | 190 | 13 | 224 | 1.97e-13 | 71.6 |
MS.gene44332.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 2.92e-13 | 71.2 |
MS.gene44332.t1 | AT1G19250 | 23.298 | 382 | 217 | 17 | 1 | 315 | 8 | 380 | 5.61e-12 | 67.4 |
MS.gene44332.t1 | AT1G65860 | 22.566 | 226 | 145 | 6 | 6 | 203 | 13 | 236 | 7.68e-11 | 63.9 |
MS.gene44332.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 9.44e-11 | 63.5 |
MS.gene44332.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 9.44e-11 | 63.5 |
Find 100 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGGATTTATCGTCCCAAAT+TGG | 0.218572 | 5.4:+23654171 | MS.gene44332:CDS |
GTATTGAAGGAATTGGTATT+TGG | 0.229329 | 5.4:-23652302 | None:intergenic |
CATTTGTAAAGGTCCCAATT+TGG | 0.241094 | 5.4:-23654185 | None:intergenic |
AATTATGAAAATTAAAAGTT+TGG | 0.248270 | 5.4:-23655004 | None:intergenic |
ATTGTAGGTGCTGGTCCTTC+TGG | 0.274701 | 5.4:+23652100 | MS.gene44332:CDS |
GGATGCTATCATTACTTTAT+CGG | 0.293233 | 5.4:+23654117 | MS.gene44332:CDS |
AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 5.4:-23652277 | None:intergenic |
TTACAAATGAAGAATCTTAC+AGG | 0.315816 | 5.4:+23654199 | MS.gene44332:CDS |
ATGATTGTTGTGCTTCTCTT+TGG | 0.323198 | 5.4:+23652182 | MS.gene44332:CDS |
ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 5.4:+23652582 | MS.gene44332:CDS |
CTGAGGGTGGGTGAGGCATG+AGG | 0.329207 | 5.4:-23652264 | None:intergenic |
GGACTTCGAACGACAATAGA+TGG | 0.338818 | 5.4:-23652667 | None:intergenic |
TTATCGGCAAAACTAAAATA+TGG | 0.345197 | 5.4:+23654133 | MS.gene44332:CDS |
GAACACTATAGAAGGGATAT+TGG | 0.347771 | 5.4:+23652429 | MS.gene44332:CDS |
ATTTGTAAAGGTCCCAATTT+GGG | 0.347806 | 5.4:-23654184 | None:intergenic |
AGGCTTGTGGGGAGTCAAAA+TGG | 0.349213 | 5.4:+23654953 | MS.gene44332:CDS |
TGTCTATGTATTGAAGGAAT+TGG | 0.353488 | 5.4:-23652309 | None:intergenic |
TGGAACTGTCGAAAAGATTA+AGG | 0.360924 | 5.4:+23654243 | MS.gene44332:CDS |
GGCTACAAAAGCATAACTAA+TGG | 0.367252 | 5.4:+23654625 | MS.gene44332:CDS |
GAAACAAAGAACACTATAGA+AGG | 0.371049 | 5.4:+23652421 | MS.gene44332:CDS |
CACTCTAAATATTACAAATC+TGG | 0.373703 | 5.4:+23652553 | MS.gene44332:CDS |
TTATTCAGTCCAGGCACATT+AGG | 0.380732 | 5.4:-23652511 | None:intergenic |
GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 5.4:-23652271 | None:intergenic |
ATCTATTGTCGTTCGAAGTC+CGG | 0.385488 | 5.4:+23652669 | MS.gene44332:CDS |
GATTAAGGAGGGATCTATAA+AGG | 0.408201 | 5.4:+23654258 | MS.gene44332:CDS |
GGGATTTATCGTCCCAAATT+GGG | 0.412423 | 5.4:+23654172 | MS.gene44332:CDS |
CATATTTGTCTATGTATTGA+AGG | 0.420134 | 5.4:-23652315 | None:intergenic |
CATAACTAATGGGTGGCTTA+AGG | 0.420449 | 5.4:+23654636 | MS.gene44332:CDS |
GAATCCACAGTTGTAATTGT+AGG | 0.425297 | 5.4:+23652085 | MS.gene44332:CDS |
GGGACGATAAATCCCGTACT+TGG | 0.427951 | 5.4:-23654164 | None:intergenic |
ATGGGTTAGCACCCGAGTTA+TGG | 0.434610 | 5.4:-23652648 | None:intergenic |
ACTCAACTGTGCGACAATAG+TGG | 0.435776 | 5.4:-23652360 | None:intergenic |
CTCATGCCTCACCCACCCTC+AGG | 0.443220 | 5.4:+23652265 | MS.gene44332:CDS |
ATTGTTGTGCTTCTCTTTGG+AGG | 0.448516 | 5.4:+23652185 | MS.gene44332:CDS |
AAATATGCTCTTAATGAGAA+AGG | 0.450742 | 5.4:+23654858 | MS.gene44332:CDS |
GTAAGATTCTTCATTTGTAA+AGG | 0.451233 | 5.4:-23654196 | None:intergenic |
ATAGCATCCACAATAGCAAC+TGG | 0.454424 | 5.4:-23654103 | None:intergenic |
GCTACAAAAGCATAACTAAT+GGG | 0.458461 | 5.4:+23654626 | MS.gene44332:CDS |
GGTATTTGGATAGGTAGGTT+GGG | 0.467624 | 5.4:-23652288 | None:intergenic |
TATGGTGATTTGTCCAAGTA+CGG | 0.467911 | 5.4:+23654151 | MS.gene44332:CDS |
GGATAGGTAGGTTGGGCCTG+AGG | 0.468970 | 5.4:-23652281 | None:intergenic |
AATATGCTCTTAATGAGAAA+GGG | 0.471517 | 5.4:+23654859 | MS.gene44332:CDS |
AGGGATATTGGAAGTTTATG+AGG | 0.472958 | 5.4:+23652441 | MS.gene44332:CDS |
TGAGGGTGGGTGAGGCATGA+GGG | 0.473573 | 5.4:-23652263 | None:intergenic |
CTCAACTGTGCGACAATAGT+GGG | 0.478673 | 5.4:-23652359 | None:intergenic |
ACTGTCAAGGAGAGGCTTGT+GGG | 0.478876 | 5.4:+23654941 | MS.gene44332:CDS |
AAGTTTCTTGTGATCGCCAC+TGG | 0.479220 | 5.4:+23652466 | MS.gene44332:CDS |
ATTTCACCATTCGCATCCCT+TGG | 0.479361 | 5.4:-23654075 | None:intergenic |
GAATTGGTATTTGGATAGGT+AGG | 0.480246 | 5.4:-23652293 | None:intergenic |
GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 5.4:+23652502 | MS.gene44332:CDS |
GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 5.4:-23652280 | None:intergenic |
GAAGGAATTGGTATTTGGAT+AGG | 0.493929 | 5.4:-23652297 | None:intergenic |
GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 5.4:-23652276 | None:intergenic |
ATGATGAGGTTAGAAACAAA+TGG | 0.503942 | 5.4:+23652392 | MS.gene44332:CDS |
TGGTATTTGGATAGGTAGGT+TGG | 0.507880 | 5.4:-23652289 | None:intergenic |
AAAATGCTTACCCGAACCAT+TGG | 0.508101 | 5.4:+23654889 | MS.gene44332:CDS |
CCTTCAAAGTTATTCAGTCC+AGG | 0.511343 | 5.4:-23652520 | None:intergenic |
GATCATGGATTGTACTGTGC+AGG | 0.519262 | 5.4:+23654918 | MS.gene44332:CDS |
AAGTCCGCAGTTATTGATGT+TGG | 0.521748 | 5.4:+23654223 | MS.gene44332:CDS |
CCTGGACTGAATAACTTTGA+AGG | 0.524426 | 5.4:+23652520 | MS.gene44332:CDS |
TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 5.4:+23652576 | MS.gene44332:CDS |
TGCTTATGATCTCCATAACT+CGG | 0.526560 | 5.4:+23652636 | MS.gene44332:CDS |
ATGGTGATTTGTCCAAGTAC+GGG | 0.532353 | 5.4:+23654152 | MS.gene44332:CDS |
GACTGTCAAGGAGAGGCTTG+TGG | 0.533040 | 5.4:+23654940 | MS.gene44332:CDS |
ACAGTTGTAATTGTAGGTGC+TGG | 0.535522 | 5.4:+23652091 | MS.gene44332:CDS |
GTAGTTGGGTGTGGTAACTC+AGG | 0.547445 | 5.4:+23652604 | MS.gene44332:CDS |
GAGGGTGGGTGAGGCATGAG+GGG | 0.557145 | 5.4:-23652262 | None:intergenic |
TCAATGCTAGTGATATATGA+AGG | 0.561811 | 5.4:-23654538 | None:intergenic |
GCAGAAATTGCTAGGCCAGA+AGG | 0.563796 | 5.4:-23652115 | None:intergenic |
TTAGGCAAGCAGAAATTGCT+AGG | 0.575098 | 5.4:-23652123 | None:intergenic |
TGCTTACCCGAACCATTGGA+AGG | 0.577260 | 5.4:+23654893 | MS.gene44332:CDS |
ATGAGGTTAGAAACAAATGG+AGG | 0.583201 | 5.4:+23652395 | MS.gene44332:CDS |
CTGTCAAGGAGAGGCTTGTG+GGG | 0.591890 | 5.4:+23654942 | MS.gene44332:CDS |
TGGGTGTGGTAACTCAGGAA+TGG | 0.594724 | 5.4:+23652609 | MS.gene44332:CDS |
CTTACCCGAACCATTGGAAG+GGG | 0.603003 | 5.4:+23654895 | MS.gene44332:CDS |
GCTTATGATCTCCATAACTC+GGG | 0.611693 | 5.4:+23652637 | MS.gene44332:CDS |
AAACAAAGAACACTATAGAA+GGG | 0.614313 | 5.4:+23652422 | MS.gene44332:CDS |
GCTTACCCGAACCATTGGAA+GGG | 0.616793 | 5.4:+23654894 | MS.gene44332:CDS |
TGTACTGTGCAGGACTGTCA+AGG | 0.617174 | 5.4:+23654928 | MS.gene44332:CDS |
AACTGTCGAAAAGATTAAGG+AGG | 0.618608 | 5.4:+23654246 | MS.gene44332:CDS |
TGATCGTTTAAACCTCCACT+TGG | 0.624802 | 5.4:+23652219 | MS.gene44332:CDS |
GTAGAGAAATGATTCACCAA+GGG | 0.627830 | 5.4:+23654059 | MS.gene44332:CDS |
ACTGAATAACTTTGAAGGAG+AGG | 0.632240 | 5.4:+23652525 | MS.gene44332:CDS |
ACTGTCGAAAAGATTAAGGA+GGG | 0.634444 | 5.4:+23654247 | MS.gene44332:CDS |
GCCACTGGTGAAAATAGTGA+AGG | 0.638559 | 5.4:+23652481 | MS.gene44332:CDS |
AGCAAAACTCACTAGCCAAG+TGG | 0.645422 | 5.4:-23652234 | None:intergenic |
TGAGGTTAGAAACAAATGGA+GGG | 0.645489 | 5.4:+23652396 | MS.gene44332:CDS |
GAATAACTTTGAAGGAGAGG+TGG | 0.646286 | 5.4:+23652528 | MS.gene44332:CDS |
TGAGTCTGCTAAGTATGATG+AGG | 0.653647 | 5.4:+23652378 | MS.gene44332:CDS |
GGATGCAGAGTCAATTGCTG+AGG | 0.658304 | 5.4:+23654974 | MS.gene44332:CDS |
GACTTCGAACGACAATAGAT+GGG | 0.661642 | 5.4:-23652666 | None:intergenic |
ACAAAAGCATAACTAATGGG+TGG | 0.664351 | 5.4:+23654629 | MS.gene44332:CDS |
AGCACCTACAATTACAACTG+TGG | 0.666119 | 5.4:-23652089 | None:intergenic |
GATTCACCAAGGGATGCGAA+TGG | 0.671019 | 5.4:+23654069 | MS.gene44332:CDS |
AGTAGAGAAATGATTCACCA+AGG | 0.673155 | 5.4:+23654058 | MS.gene44332:CDS |
AAAACTCACTAGCCAAGTGG+AGG | 0.678012 | 5.4:-23652231 | None:intergenic |
TGTGCAGGACTGTCAAGGAG+AGG | 0.680971 | 5.4:+23654933 | MS.gene44332:CDS |
TCAACTGTGCGACAATAGTG+GGG | 0.708232 | 5.4:-23652358 | None:intergenic |
TTACCCGAACCATTGGAAGG+GGG | 0.721390 | 5.4:+23654896 | MS.gene44332:CDS |
AGTTCCAACATCAATAACTG+CGG | 0.739531 | 5.4:-23654227 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+GGG | - | chr5.4:23653305-23653286 | None:intergenic | 0.0% |
!! | TATATATATATATATATATA+TGG | - | chr5.4:23653306-23653287 | None:intergenic | 0.0% |
!! | AATTAGTAAATTATCTATAA+AGG | - | chr5.4:23654349-23654368 | None:intergenic | 10.0% |
!! | AATTATGAAAATTAAAAGTT+TGG | - | chr5.4:23655007-23655026 | None:intergenic | 10.0% |
!! | CAATATAAAAATAATATGTA+TGG | + | chr5.4:23653963-23653982 | MS.gene44332:intron | 10.0% |
!!! | ATCAATATTATACAATATTT+TGG | + | chr5.4:23653036-23653055 | MS.gene44332:intron | 10.0% |
!! | ACATACATACATATATATAT+AGG | + | chr5.4:23653510-23653529 | MS.gene44332:intron | 15.0% |
!! | ATATATTCATCATAAAAACA+GGG | + | chr5.4:23653794-23653813 | MS.gene44332:intron | 15.0% |
!! | CATAATCATAATTAAGATAA+AGG | + | chr5.4:23654673-23654692 | MS.gene44332:intron | 15.0% |
!! | CATACATACATATATATATA+GGG | + | chr5.4:23653511-23653530 | MS.gene44332:intron | 15.0% |
!! | TATATATTCATCATAAAAAC+AGG | + | chr5.4:23653793-23653812 | MS.gene44332:intron | 15.0% |
!! | TATTAATAACTTGAAGAATT+AGG | - | chr5.4:23654803-23654822 | None:intergenic | 15.0% |
!! | TTATAATATGTTCAAAACTA+TGG | + | chr5.4:23654459-23654478 | MS.gene44332:intron | 15.0% |
!!! | AGTTTTTTTTTTAACAATGT+TGG | + | chr5.4:23653833-23653852 | MS.gene44332:intron | 15.0% |
!! | AATGTAAGTTGTATATTGTA+AGG | - | chr5.4:23654721-23654740 | None:intergenic | 20.0% |
!! | AATTTAAATTTGTATACCCA+AGG | + | chr5.4:23652747-23652766 | MS.gene44332:intron | 20.0% |
!! | ACAATTAAATTGTCTATGTA+TGG | - | chr5.4:23652787-23652806 | None:intergenic | 20.0% |
!! | ATATATTGAAAAAGAATTGC+TGG | - | chr5.4:23652960-23652979 | None:intergenic | 20.0% |
!! | ATGTAAGTTGTATATTGTAA+GGG | - | chr5.4:23654720-23654739 | None:intergenic | 20.0% |
!! | GAGTTAGAAATATTATTTAC+CGG | - | chr5.4:23652691-23652710 | None:intergenic | 20.0% |
!! | TTCAAAATATGAATCAAAAG+AGG | + | chr5.4:23652576-23652595 | MS.gene44332:CDS | 20.0% |
!!! | ATCTGAGATTGAATTATTAA+TGG | + | chr5.4:23653077-23653096 | MS.gene44332:intron | 20.0% |
!!! | GGAAGTAAGAATAAATTTTT+TGG | + | chr5.4:23653119-23653138 | MS.gene44332:intron | 20.0% |
!!! | TCTGAGATTGAATTATTAAT+GGG | + | chr5.4:23653078-23653097 | MS.gene44332:intron | 20.0% |
!!! | TTATTTGATGTATTTTTCGA+AGG | + | chr5.4:23654830-23654849 | MS.gene44332:intron | 20.0% |
!!! | TTGTGTGCTTTTTTTTTTAT+TGG | + | chr5.4:23654757-23654776 | MS.gene44332:intron | 20.0% |
! | AAACAAAGAACACTATAGAA+GGG | + | chr5.4:23652422-23652441 | MS.gene44332:CDS | 25.0% |
! | AAATATGCTCTTAATGAGAA+AGG | + | chr5.4:23654858-23654877 | MS.gene44332:CDS | 25.0% |
! | AATAACTTGAAGAATTAGGA+AGG | - | chr5.4:23654799-23654818 | None:intergenic | 25.0% |
! | AATATGCTCTTAATGAGAAA+GGG | + | chr5.4:23654859-23654878 | MS.gene44332:CDS | 25.0% |
! | ATAACTTGAAGAATTAGGAA+GGG | - | chr5.4:23654798-23654817 | None:intergenic | 25.0% |
! | CACTCTAAATATTACAAATC+TGG | + | chr5.4:23652553-23652572 | MS.gene44332:CDS | 25.0% |
! | CATATTTGTCTATGTATTGA+AGG | - | chr5.4:23652318-23652337 | None:intergenic | 25.0% |
! | CTGAGATTGAATTATTAATG+GGG | + | chr5.4:23653079-23653098 | MS.gene44332:intron | 25.0% |
! | GAGAAAAAGAAAGTTGTATT+TGG | + | chr5.4:23654559-23654578 | MS.gene44332:CDS | 25.0% |
! | GTAAGATTCTTCATTTGTAA+AGG | - | chr5.4:23654199-23654218 | None:intergenic | 25.0% |
! | TTACAAATGAAGAATCTTAC+AGG | + | chr5.4:23654199-23654218 | MS.gene44332:CDS | 25.0% |
! | TTATCGGCAAAACTAAAATA+TGG | + | chr5.4:23654133-23654152 | MS.gene44332:CDS | 25.0% |
!! | ATATGAATCAAAAGAGGTTT+TGG | + | chr5.4:23652582-23652601 | MS.gene44332:CDS | 25.0% |
!! | TAAAGACAATATGTGTTTTG+CGG | + | chr5.4:23653992-23654011 | MS.gene44332:intron | 25.0% |
!!! | TTTTTTTAGACCTATCTAGT+TGG | + | chr5.4:23652993-23653012 | MS.gene44332:intron | 25.0% |
ACACCTTCATAAAAGTAAGT+TGG | - | chr5.4:23653607-23653626 | None:intergenic | 30.0% | |
ATGATGAGGTTAGAAACAAA+TGG | + | chr5.4:23652392-23652411 | MS.gene44332:CDS | 30.0% | |
ATGTCACACACTTACTTTAA+TGG | - | chr5.4:23654490-23654509 | None:intergenic | 30.0% | |
ATTTGTAAAGGTCCCAATTT+GGG | - | chr5.4:23654187-23654206 | None:intergenic | 30.0% | |
GAAACAAAGAACACTATAGA+AGG | + | chr5.4:23652421-23652440 | MS.gene44332:CDS | 30.0% | |
GGAGATTTATATGTATCCTT+GGG | - | chr5.4:23652766-23652785 | None:intergenic | 30.0% | |
GGATGCTATCATTACTTTAT+CGG | + | chr5.4:23654117-23654136 | MS.gene44332:CDS | 30.0% | |
GTATTGAAGGAATTGGTATT+TGG | - | chr5.4:23652305-23652324 | None:intergenic | 30.0% | |
TCAATGCTAGTGATATATGA+AGG | - | chr5.4:23654541-23654560 | None:intergenic | 30.0% | |
TGGAGATTTATATGTATCCT+TGG | - | chr5.4:23652767-23652786 | None:intergenic | 30.0% | |
TGTCTATGTATTGAAGGAAT+TGG | - | chr5.4:23652312-23652331 | None:intergenic | 30.0% | |
TGTGTGACATAACTTTGATT+TGG | + | chr5.4:23654500-23654519 | MS.gene44332:intron | 30.0% | |
TTATAGATGTCCAACTAGAT+AGG | - | chr5.4:23653006-23653025 | None:intergenic | 30.0% | |
! | GCTACAAAAGCATAACTAAT+GGG | + | chr5.4:23654626-23654645 | MS.gene44332:CDS | 30.0% |
!! | ACACCAACTTACTTTTATGA+AGG | + | chr5.4:23653601-23653620 | MS.gene44332:intron | 30.0% |
!! | ATATTTTCCAGTTGCTATTG+TGG | + | chr5.4:23654096-23654115 | MS.gene44332:CDS | 30.0% |
!!! | ATATTTTGGTGTGTTAACCA+AGG | + | chr5.4:23653050-23653069 | MS.gene44332:intron | 30.0% |
!!! | GGGGCTAATTTTTTTTTTGA+AGG | + | chr5.4:23653098-23653117 | MS.gene44332:intron | 30.0% |
!!! | TATTTTGGTGTGTTAACCAA+GGG | + | chr5.4:23653051-23653070 | MS.gene44332:intron | 30.0% |
AACTGTCGAAAAGATTAAGG+AGG | + | chr5.4:23654246-23654265 | MS.gene44332:CDS | 35.0% | |
ACTGTCGAAAAGATTAAGGA+GGG | + | chr5.4:23654247-23654266 | MS.gene44332:CDS | 35.0% | |
AGGGATATTGGAAGTTTATG+AGG | + | chr5.4:23652441-23652460 | MS.gene44332:CDS | 35.0% | |
AGTAGAGAAATGATTCACCA+AGG | + | chr5.4:23654058-23654077 | MS.gene44332:CDS | 35.0% | |
AGTTCCAACATCAATAACTG+CGG | - | chr5.4:23654230-23654249 | None:intergenic | 35.0% | |
ATATATGAAGGAACAACCTG+TGG | - | chr5.4:23654529-23654548 | None:intergenic | 35.0% | |
ATGAGGTTAGAAACAAATGG+AGG | + | chr5.4:23652395-23652414 | MS.gene44332:CDS | 35.0% | |
ATGATTGTTGTGCTTCTCTT+TGG | + | chr5.4:23652182-23652201 | MS.gene44332:CDS | 35.0% | |
ATTAATCATCTACACACACG+AGG | - | chr5.4:23654304-23654323 | None:intergenic | 35.0% | |
CATTTGTAAAGGTCCCAATT+TGG | - | chr5.4:23654188-23654207 | None:intergenic | 35.0% | |
CTAAAAGACACCTTCACAAA+AGG | - | chr5.4:23653552-23653571 | None:intergenic | 35.0% | |
GAACACTATAGAAGGGATAT+TGG | + | chr5.4:23652429-23652448 | MS.gene44332:CDS | 35.0% | |
GAAGGAATTGGTATTTGGAT+AGG | - | chr5.4:23652300-23652319 | None:intergenic | 35.0% | |
GAATCCACAGTTGTAATTGT+AGG | + | chr5.4:23652085-23652104 | MS.gene44332:CDS | 35.0% | |
GAATTGGTATTTGGATAGGT+AGG | - | chr5.4:23652296-23652315 | None:intergenic | 35.0% | |
GATTAAGGAGGGATCTATAA+AGG | + | chr5.4:23654258-23654277 | MS.gene44332:CDS | 35.0% | |
GTAGAGAAATGATTCACCAA+GGG | + | chr5.4:23654059-23654078 | MS.gene44332:CDS | 35.0% | |
TGAGGTTAGAAACAAATGGA+GGG | + | chr5.4:23652396-23652415 | MS.gene44332:CDS | 35.0% | |
TGCTTATGATCTCCATAACT+CGG | + | chr5.4:23652636-23652655 | MS.gene44332:CDS | 35.0% | |
TGGAACTGTCGAAAAGATTA+AGG | + | chr5.4:23654243-23654262 | MS.gene44332:CDS | 35.0% | |
! | ACAAAAGCATAACTAATGGG+TGG | + | chr5.4:23654629-23654648 | MS.gene44332:CDS | 35.0% |
! | ACTGAATAACTTTGAAGGAG+AGG | + | chr5.4:23652525-23652544 | MS.gene44332:CDS | 35.0% |
! | GGCTACAAAAGCATAACTAA+TGG | + | chr5.4:23654625-23654644 | MS.gene44332:CDS | 35.0% |
! | TATGGTGATTTGTCCAAGTA+CGG | + | chr5.4:23654151-23654170 | MS.gene44332:CDS | 35.0% |
!! | AGTGGGGTTTTATGTTGAAA+TGG | - | chr5.4:23652345-23652364 | None:intergenic | 35.0% |
!! | CAAAAGAGGTTTTGGTAGTT+GGG | + | chr5.4:23652590-23652609 | MS.gene44332:CDS | 35.0% |
!! | TCAAAAGAGGTTTTGGTAGT+TGG | + | chr5.4:23652589-23652608 | MS.gene44332:CDS | 35.0% |
AAAATGCTTACCCGAACCAT+TGG | + | chr5.4:23654889-23654908 | MS.gene44332:CDS | 40.0% | |
AAAGTGCAAATCACACCTTG+AGG | + | chr5.4:23653649-23653668 | MS.gene44332:intron | 40.0% | |
AAGTCCGCAGTTATTGATGT+TGG | + | chr5.4:23654223-23654242 | MS.gene44332:CDS | 40.0% | |
ACAGTTGTAATTGTAGGTGC+TGG | + | chr5.4:23652091-23652110 | MS.gene44332:CDS | 40.0% | |
AGCACCTACAATTACAACTG+TGG | - | chr5.4:23652092-23652111 | None:intergenic | 40.0% | |
ATAGCATCCACAATAGCAAC+TGG | - | chr5.4:23654106-23654125 | None:intergenic | 40.0% | |
ATCTATTGTCGTTCGAAGTC+CGG | + | chr5.4:23652669-23652688 | MS.gene44332:CDS | 40.0% | |
ATTGTTGTGCTTCTCTTTGG+AGG | + | chr5.4:23652185-23652204 | MS.gene44332:CDS | 40.0% | |
CCTGGACTGAATAACTTTGA+AGG | + | chr5.4:23652520-23652539 | MS.gene44332:CDS | 40.0% | |
CCTTCAAAGTTATTCAGTCC+AGG | - | chr5.4:23652523-23652542 | None:intergenic | 40.0% | |
GACTTCGAACGACAATAGAT+GGG | - | chr5.4:23652669-23652688 | None:intergenic | 40.0% | |
GCTTATGATCTCCATAACTC+GGG | + | chr5.4:23652637-23652656 | MS.gene44332:CDS | 40.0% | |
GGGATTTATCGTCCCAAATT+GGG | + | chr5.4:23654172-23654191 | MS.gene44332:CDS | 40.0% | |
GGTATTTGGATAGGTAGGTT+GGG | - | chr5.4:23652291-23652310 | None:intergenic | 40.0% | |
GGTTATATTCCTAATGTGCC+TGG | + | chr5.4:23652502-23652521 | MS.gene44332:CDS | 40.0% | |
TGAGTCTGCTAAGTATGATG+AGG | + | chr5.4:23652378-23652397 | MS.gene44332:CDS | 40.0% | |
TGATCGTTTAAACCTCCACT+TGG | + | chr5.4:23652219-23652238 | MS.gene44332:CDS | 40.0% | |
TGCTAAAAGACACCACCAAA+GGG | + | chr5.4:23653679-23653698 | MS.gene44332:intron | 40.0% | |
TGGTATTTGGATAGGTAGGT+TGG | - | chr5.4:23652292-23652311 | None:intergenic | 40.0% | |
TTAGGCAAGCAGAAATTGCT+AGG | - | chr5.4:23652126-23652145 | None:intergenic | 40.0% | |
TTATTCAGTCCAGGCACATT+AGG | - | chr5.4:23652514-23652533 | None:intergenic | 40.0% | |
TTGCTAAAAGACACCACCAA+AGG | + | chr5.4:23653678-23653697 | MS.gene44332:intron | 40.0% | |
! | ACCTTCACTATTTTCACCAG+TGG | - | chr5.4:23652485-23652504 | None:intergenic | 40.0% |
! | ATGGTGATTTGTCCAAGTAC+GGG | + | chr5.4:23654152-23654171 | MS.gene44332:CDS | 40.0% |
! | CATAACTAATGGGTGGCTTA+AGG | + | chr5.4:23654636-23654655 | MS.gene44332:CDS | 40.0% |
! | CTAGAAGACACCTTTTGTGA+AGG | + | chr5.4:23653539-23653558 | MS.gene44332:intron | 40.0% |
! | GAATAACTTTGAAGGAGAGG+TGG | + | chr5.4:23652528-23652547 | MS.gene44332:CDS | 40.0% |
! | TTTTAGCAAGTCACACCTCA+AGG | - | chr5.4:23653667-23653686 | None:intergenic | 40.0% |
!! | AACTTTGATTTGGATGCCAC+AGG | + | chr5.4:23654510-23654529 | MS.gene44332:intron | 40.0% |
!! | GAGAGATGCAGTTTTGTGTT+AGG | - | chr5.4:23652144-23652163 | None:intergenic | 40.0% |
!!! | TGGTTCGGGTAAGCATTTTT+TGG | - | chr5.4:23654888-23654907 | None:intergenic | 40.0% |
AAAACTCACTAGCCAAGTGG+AGG | - | chr5.4:23652234-23652253 | None:intergenic | 45.0% | |
AAGTTTCTTGTGATCGCCAC+TGG | + | chr5.4:23652466-23652485 | MS.gene44332:CDS | 45.0% | |
ACTCAACTGTGCGACAATAG+TGG | - | chr5.4:23652363-23652382 | None:intergenic | 45.0% | |
AGCAAAACTCACTAGCCAAG+TGG | - | chr5.4:23652237-23652256 | None:intergenic | 45.0% | |
ATTTCACCATTCGCATCCCT+TGG | - | chr5.4:23654078-23654097 | None:intergenic | 45.0% | |
CGGGATTTATCGTCCCAAAT+TGG | + | chr5.4:23654171-23654190 | MS.gene44332:CDS | 45.0% | |
CTCAACTGTGCGACAATAGT+GGG | - | chr5.4:23652362-23652381 | None:intergenic | 45.0% | |
GCCACTGGTGAAAATAGTGA+AGG | + | chr5.4:23652481-23652500 | MS.gene44332:CDS | 45.0% | |
GGACTTCGAACGACAATAGA+TGG | - | chr5.4:23652670-23652689 | None:intergenic | 45.0% | |
TAAAAGACACCACCAAAGGG+TGG | + | chr5.4:23653682-23653701 | MS.gene44332:intron | 45.0% | |
TCAACTGTGCGACAATAGTG+GGG | - | chr5.4:23652361-23652380 | None:intergenic | 45.0% | |
! | GATCATGGATTGTACTGTGC+AGG | + | chr5.4:23654918-23654937 | MS.gene44332:CDS | 45.0% |
! | TTTGGTGTGTTAACCAAGGG+CGG | + | chr5.4:23653054-23653073 | MS.gene44332:intron | 45.0% |
!! | TATTCAAAAAATAATAATAA+TGG | - | chr5.4:23653874-23653893 | None:intergenic | 5.0% |
AACCATTGGAAGGGGGATCA+TGG | + | chr5.4:23654903-23654922 | MS.gene44332:CDS | 50.0% | |
ACTGTCAAGGAGAGGCTTGT+GGG | + | chr5.4:23654941-23654960 | MS.gene44332:CDS | 50.0% | |
AGGCTTGTGGGGAGTCAAAA+TGG | + | chr5.4:23654953-23654972 | MS.gene44332:CDS | 50.0% | |
ATCCATGATCCCCCTTCCAA+TGG | - | chr5.4:23654908-23654927 | None:intergenic | 50.0% | |
CTTACCCGAACCATTGGAAG+GGG | + | chr5.4:23654895-23654914 | MS.gene44332:CDS | 50.0% | |
GATTCACCAAGGGATGCGAA+TGG | + | chr5.4:23654069-23654088 | MS.gene44332:CDS | 50.0% | |
GCAGAAATTGCTAGGCCAGA+AGG | - | chr5.4:23652118-23652137 | None:intergenic | 50.0% | |
GCTTACCCGAACCATTGGAA+GGG | + | chr5.4:23654894-23654913 | MS.gene44332:CDS | 50.0% | |
GGATGCAGAGTCAATTGCTG+AGG | + | chr5.4:23654974-23654993 | MS.gene44332:CDS | 50.0% | |
GGGACGATAAATCCCGTACT+TGG | - | chr5.4:23654167-23654186 | None:intergenic | 50.0% | |
GTAGTTGGGTGTGGTAACTC+AGG | + | chr5.4:23652604-23652623 | MS.gene44332:CDS | 50.0% | |
TCTTGCTACAAGCCACCCTT+TGG | - | chr5.4:23653697-23653716 | None:intergenic | 50.0% | |
TGATCCCCCTTCCAATGGTT+CGG | - | chr5.4:23654903-23654922 | None:intergenic | 50.0% | |
TGCTTACCCGAACCATTGGA+AGG | + | chr5.4:23654893-23654912 | MS.gene44332:CDS | 50.0% | |
TGGGTGTGGTAACTCAGGAA+TGG | + | chr5.4:23652609-23652628 | MS.gene44332:CDS | 50.0% | |
TGTACTGTGCAGGACTGTCA+AGG | + | chr5.4:23654928-23654947 | MS.gene44332:CDS | 50.0% | |
TTACCCGAACCATTGGAAGG+GGG | + | chr5.4:23654896-23654915 | MS.gene44332:CDS | 50.0% | |
TTCAATCTCAGATCCGCCCT+TGG | - | chr5.4:23653070-23653089 | None:intergenic | 50.0% | |
! | GATGCGATCGTTTTCGCAAC+TGG | + | chr5.4:23654604-23654623 | MS.gene44332:CDS | 50.0% |
!! | ATGGGTTAGCACCCGAGTTA+TGG | - | chr5.4:23652651-23652670 | None:intergenic | 50.0% |
!! | ATTGTAGGTGCTGGTCCTTC+TGG | + | chr5.4:23652100-23652119 | MS.gene44332:CDS | 50.0% |
!! | GAGGTTTTGGTAGTTGGGTG+TGG | + | chr5.4:23652595-23652614 | MS.gene44332:CDS | 50.0% |
CTGTCAAGGAGAGGCTTGTG+GGG | + | chr5.4:23654942-23654961 | MS.gene44332:CDS | 55.0% | |
GACTGTCAAGGAGAGGCTTG+TGG | + | chr5.4:23654940-23654959 | MS.gene44332:CDS | 55.0% | |
GATCCCCCTTCCAATGGTTC+GGG | - | chr5.4:23654902-23654921 | None:intergenic | 55.0% | |
TGCTACAAGCCACCCTTTGG+TGG | - | chr5.4:23653694-23653713 | None:intergenic | 55.0% | |
TGTGCAGGACTGTCAAGGAG+AGG | + | chr5.4:23654933-23654952 | MS.gene44332:CDS | 55.0% | |
! | GATAGGTAGGTTGGGCCTGA+GGG | - | chr5.4:23652283-23652302 | None:intergenic | 55.0% |
TGAGGGTGGGTGAGGCATGA+GGG | - | chr5.4:23652266-23652285 | None:intergenic | 60.0% | |
! | GGATAGGTAGGTTGGGCCTG+AGG | - | chr5.4:23652284-23652303 | None:intergenic | 60.0% |
CTCATGCCTCACCCACCCTC+AGG | + | chr5.4:23652265-23652284 | MS.gene44332:CDS | 65.0% | |
CTGAGGGTGGGTGAGGCATG+AGG | - | chr5.4:23652267-23652286 | None:intergenic | 65.0% | |
GAGGGTGGGTGAGGCATGAG+GGG | - | chr5.4:23652265-23652284 | None:intergenic | 65.0% | |
! | AGGTAGGTTGGGCCTGAGGG+TGG | - | chr5.4:23652280-23652299 | None:intergenic | 65.0% |
! | GGTAGGTTGGGCCTGAGGGT+GGG | - | chr5.4:23652279-23652298 | None:intergenic | 65.0% |
GTTGGGCCTGAGGGTGGGTG+AGG | - | chr5.4:23652274-23652293 | None:intergenic | 70.0% | |
! | TGCGCGCGCGCGCGCGTGTG+TGG | - | chr5.4:23653247-23653266 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 23652079 | 23655028 | 23652079 | ID=MS.gene44332 |
chr5.4 | mRNA | 23652079 | 23655028 | 23652079 | ID=MS.gene44332.t1;Parent=MS.gene44332 |
chr5.4 | exon | 23652079 | 23652690 | 23652079 | ID=MS.gene44332.t1.exon1;Parent=MS.gene44332.t1 |
chr5.4 | CDS | 23652079 | 23652690 | 23652079 | ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1 |
chr5.4 | exon | 23654046 | 23654279 | 23654046 | ID=MS.gene44332.t1.exon2;Parent=MS.gene44332.t1 |
chr5.4 | CDS | 23654046 | 23654279 | 23654046 | ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1 |
chr5.4 | exon | 23654532 | 23654657 | 23654532 | ID=MS.gene44332.t1.exon3;Parent=MS.gene44332.t1 |
chr5.4 | CDS | 23654532 | 23654657 | 23654532 | ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1 |
chr5.4 | exon | 23654852 | 23655028 | 23654852 | ID=MS.gene44332.t1.exon4;Parent=MS.gene44332.t1 |
chr5.4 | CDS | 23654852 | 23655028 | 23654852 | ID=cds.MS.gene44332.t1;Parent=MS.gene44332.t1 |
Gene Sequence |
Protein sequence |